signature stringlengths 29 44.1k | implementation stringlengths 0 85.2k |
|---|---|
def unique_ordered ( list_ ) :
"""Returns unique items in ` ` list _ ` ` in the order they were seen .
Args :
list _ ( list ) :
Returns :
list : unique _ list - unique list which maintains order
CommandLine :
python - m utool . util _ list - - exec - unique _ ordered
Example :
> > > # ENABLE _ DOCTE... | list_ = list ( list_ )
flag_list = flag_unique_items ( list_ )
unique_list = compress ( list_ , flag_list )
return unique_list |
def add ( self , ipaddr = None , proto = None , port = None , fields = None ) :
"""Add a service record
: param ipaddr : IP Address
: param proto : Protocol ( tcp , udp , info )
: param port : Port ( 0-65535)
: param fields : Extra fields
: return : ( True / False , t _ services . id or response message )... | return self . send . service_add ( ipaddr , proto , port , fields ) |
def add_node ( cls , cluster_id_label , parameters = None ) :
"""Add a node to an existing cluster""" | conn = Qubole . agent ( version = Cluster . api_version )
parameters = { } if not parameters else parameters
return conn . post ( cls . element_path ( cluster_id_label ) + "/nodes" , data = { "parameters" : parameters } ) |
def _startup ( cls ) :
"""Create Endpoint instances and manage automatic flags .""" | for endpoint_name in sorted ( hookenv . relation_types ( ) ) : # populate context based on attached relations
relf = relation_factory ( endpoint_name )
if not relf or not issubclass ( relf , cls ) :
continue
rids = sorted ( hookenv . relation_ids ( endpoint_name ) )
# ensure that relation IDs ha... |
def _default_request_kwargs ( self ) :
"""The default request keyword arguments to be passed to the requests library .""" | defaults = copy . deepcopy ( super ( Acls , self ) . _default_request_kwargs )
defaults . setdefault ( 'headers' , { } ) . update ( { 'X-Auth-Token' : self . _client . auth . _token } )
return defaults |
def split_namespace ( self , tag ) :
r"""Split tag namespace .
: param tag : tag name
: return : a pair of ( namespace , tag )
: rtype : tuple""" | matchobj = self . __regex [ 'xml_ns' ] . search ( tag )
return matchobj . groups ( ) if matchobj else ( '' , tag ) |
def _is_statement_in_list ( new_stmt , old_stmt_list ) :
"""Return True of given statement is equivalent to on in a list
Determines whether the statement is equivalent to any statement in the
given list of statements , with equivalency determined by Statement ' s
equals method .
Parameters
new _ stmt : in... | for old_stmt in old_stmt_list :
if old_stmt . equals ( new_stmt ) :
return True
elif old_stmt . evidence_equals ( new_stmt ) and old_stmt . matches ( new_stmt ) : # If we ' re comparing a complex , make sure the agents are sorted .
if isinstance ( new_stmt , Complex ) :
agent_pairs =... |
def policy_definition_absent ( name , connection_auth = None ) :
'''. . versionadded : : 2019.2.0
Ensure a policy definition does not exist in the current subscription .
: param name :
Name of the policy definition .
: param connection _ auth :
A dict with subscription and authentication parameters to be ... | ret = { 'name' : name , 'result' : False , 'comment' : '' , 'changes' : { } }
if not isinstance ( connection_auth , dict ) :
ret [ 'comment' ] = 'Connection information must be specified via connection_auth dictionary!'
return ret
policy = __salt__ [ 'azurearm_resource.policy_definition_get' ] ( name , azurearm... |
def get_throttled_by_provisioned_read_event_percent ( table_name , gsi_name , lookback_window_start = 15 , lookback_period = 5 ) :
"""Returns the number of throttled read events in percent
: type table _ name : str
: param table _ name : Name of the DynamoDB table
: type gsi _ name : str
: param gsi _ name ... | try :
metrics = __get_aws_metric ( table_name , gsi_name , lookback_window_start , lookback_period , 'ReadThrottleEvents' )
except BotoServerError :
raise
if metrics :
lookback_seconds = lookback_period * 60
throttled_read_events = ( float ( metrics [ 0 ] [ 'Sum' ] ) / float ( lookback_seconds ) )
else ... |
def _unpack ( formatstring , packed ) :
"""Unpack a bytestring into a value .
Uses the built - in : mod : ` struct ` Python module .
Args :
* formatstring ( str ) : String for the packing . See the : mod : ` struct ` module for details .
* packed ( str ) : The bytestring to be unpacked .
Returns :
A val... | _checkString ( formatstring , description = 'formatstring' , minlength = 1 )
_checkString ( packed , description = 'packed string' , minlength = 1 )
if sys . version_info [ 0 ] > 2 :
packed = bytes ( packed , encoding = 'latin1' )
# Convert types to make it Python3 compatible
try :
value = struct . unpack ( for... |
def user_info ( self , username ) :
"""Get info of a specific user .
: param username : the username of the user to get info about
: return :""" | request_url = "{}/api/0/user/{}" . format ( self . instance , username )
return_value = self . _call_api ( request_url )
return return_value |
def _outliers ( self , x ) :
"""Compute number of outliers""" | outliers = self . _tukey ( x , threshold = 1.5 )
return np . size ( outliers ) |
def read_cz_sem ( fh , byteorder , dtype , count , offsetsize ) :
"""Read Zeiss SEM tag and return as dict .
See https : / / sourceforge . net / p / gwyddion / mailman / message / 29275000 / for
unnamed values .""" | result = { '' : ( ) }
key = None
data = bytes2str ( stripnull ( fh . read ( count ) ) )
for line in data . splitlines ( ) :
if line . isupper ( ) :
key = line . lower ( )
elif key :
try :
name , value = line . split ( '=' )
except ValueError :
try :
... |
def state ( self ) :
"""Personsa state ( e . g . Online , Offline , Away , Busy , etc )
: rtype : : class : ` . EPersonaState `""" | state = self . get_ps ( 'persona_state' , False )
return EPersonaState ( state ) if state else EPersonaState . Offline |
def _get_constrs_load_memory ( self , gadget ) :
"""Generate constraints for the LoadMemory gadgets : dst _ reg < - mem [ src _ reg + offset ]""" | dst = self . analyzer . get_register_expr ( gadget . destination [ 0 ] . name , mode = "post" )
size = gadget . destination [ 0 ] . size
if isinstance ( gadget . sources [ 0 ] , ReilRegisterOperand ) :
base_addr = self . analyzer . get_register_expr ( gadget . sources [ 0 ] . name , mode = "pre" )
offset = gadg... |
def QA_util_get_real_datelist ( start , end ) :
"""取数据的真实区间 , 返回的时候用 start , end = QA _ util _ get _ real _ datelist
@ yutiansut
2017/8/10
当start end中间没有交易日 返回None , None
@ yutiansut / 2017-12-19""" | real_start = QA_util_get_real_date ( start , trade_date_sse , 1 )
real_end = QA_util_get_real_date ( end , trade_date_sse , - 1 )
if trade_date_sse . index ( real_start ) > trade_date_sse . index ( real_end ) :
return None , None
else :
return ( real_start , real_end ) |
def nx_transitive_reduction ( G , mode = 1 ) :
"""References :
https : / / en . wikipedia . org / wiki / Transitive _ reduction # Computing _ the _ reduction _ using _ the _ closure
http : / / dept - info . labri . fr / ~ thibault / tmp / 0201008 . pdf
http : / / stackoverflow . com / questions / 17078696 / t... | import utool as ut
has_cycles = not nx . is_directed_acyclic_graph ( G )
if has_cycles : # FIXME : this does not work for cycle graphs .
# Need to do algorithm on SCCs
G_orig = G
G = nx . condensation ( G_orig )
nodes = list ( G . nodes ( ) )
node2_idx = ut . make_index_lookup ( nodes )
# For each node u , perf... |
def check_environment ( provider_conf ) :
"""Check all ressources needed by Enos .""" | session = get_session ( )
image_id = check_glance ( session , provider_conf . image )
flavor_to_id , id_to_flavor = check_flavors ( session )
ext_net , network , subnet = check_network ( session , provider_conf . configure_network , provider_conf . network , subnet = provider_conf . subnet , dns_nameservers = provider_... |
def parse_requirements ( file_ ) :
"""Parse a requirements formatted file .
Traverse a string until a delimiter is detected , then split at said
delimiter , get module name by element index , create a dict consisting of
module : version , and add dict to list of parsed modules .
Args :
file _ : File to pa... | modules = [ ]
delim = [ "<" , ">" , "=" , "!" , "~" ]
# https : / / www . python . org / dev / peps / pep - 0508 / # complete - grammar
try :
f = open_func ( file_ , "r" )
except OSError :
logging . error ( "Failed on file: {}" . format ( file_ ) )
raise
else :
data = [ x . strip ( ) for x in f . readli... |
def set_initial_state ( self , initial_state , initial_frames ) :
"""Sets the state that will be used on next reset .""" | self . env . set_initial_state ( initial_state , initial_frames )
self . _initial_frames = initial_frames |
async def acquire_lease_async ( self , lease ) :
"""Acquire the lease on the desired partition for this EventProcessorHost .
Note that it is legal to acquire a lease that is already owned by another host .
Lease - stealing is how partitions are redistributed when additional hosts are started .
: param lease :... | retval = True
new_lease_id = str ( uuid . uuid4 ( ) )
partition_id = lease . partition_id
try :
if asyncio . iscoroutinefunction ( lease . state ) :
state = await lease . state ( )
else :
state = lease . state ( )
if state == "leased" :
if not lease . token : # We reach here in a rac... |
def is_escalable ( self , notification , escalations , timeperiods ) :
"""Check if a notification can be escalated .
Basically call is _ eligible for each escalation
: param notification : notification we would like to escalate
: type notification : alignak . objects . notification . Notification
: param es... | cls = self . __class__
# We search since when we are in notification for escalations
# that are based on time
in_notif_time = time . time ( ) - notification . creation_time
# Check is an escalation match the current _ notification _ number
for escalation_id in self . escalations :
escalation = escalations [ escalat... |
def is_purine ( nucleotide , allow_extended_nucleotides = False ) :
"""Is the nucleotide a purine""" | if not allow_extended_nucleotides and nucleotide not in STANDARD_NUCLEOTIDES :
raise ValueError ( "{} is a non-standard nucleotide, neither purine or pyrimidine" . format ( nucleotide ) )
return nucleotide in PURINE_NUCLEOTIDES |
def triplifyGML ( fname = "foo.gml" , fpath = "./fb/" , scriptpath = None , uid = None , sid = None , extra_info = None ) :
"""Produce a linked data publication tree from a standard GML file .
INPUTS :
= > the file name ( fname , with path ) where the gdf file
of the friendship network is .
= > the final pa... | # aname = fname . split ( " / " ) [ - 1 ] . split ( " . " ) [ 0]
aname = fname . split ( "/" ) [ - 1 ] . split ( "." ) [ 0 ]
if "RonaldCosta" in fname :
aname = fname . split ( "/" ) [ - 1 ] . split ( "." ) [ 0 ]
name , day , month , year = re . findall ( ".*/([a-zA-Z]*)(\d\d)(\d\d)(\d\d\d\d).gml" , fname ) [ 0... |
def venv_resolve_deps ( deps , which , project , pre = False , clear = False , allow_global = False , pypi_mirror = None , dev = False , pipfile = None , lockfile = None , keep_outdated = False ) :
"""Resolve dependencies for a pipenv project , acts as a portal to the target environment .
Regardless of whether a ... | from . vendor . vistir . misc import fs_str
from . vendor . vistir . compat import Path , JSONDecodeError , NamedTemporaryFile
from . vendor . vistir . path import create_tracked_tempdir
from . import resolver
from . _compat import decode_for_output
import json
results = [ ]
pipfile_section = "dev-packages" if dev else... |
def _generate_field_with_default ( ** kwargs ) :
"""Only called if field . default ! = NOT _ PROVIDED""" | field = kwargs [ 'field' ]
if callable ( field . default ) :
return field . default ( )
return field . default |
def _populate_profile_flags_from_dn_regex ( self , profile ) :
"""Populate the given profile object flags from AUTH _ LDAP _ PROFILE _ FLAGS _ BY _ DN _ REGEX .
Returns True if the profile was modified""" | save_profile = True
for field , regex in self . settings . PROFILE_FLAGS_BY_DN_REGEX . items ( ) :
field_value = False
if re . search ( regex , self . _get_user_dn ( ) , re . IGNORECASE ) :
field_value = True
setattr ( profile , field , field_value )
save_profile = True
return save_profile |
def replace_body_vars ( self , body ) :
"""Given a multiline string that is the body of the job script , replace
the placeholders for environment variables with backend - specific
realizations , and return the modified body . See the ` job _ vars `
attribute for the mappings that are performed .""" | for key , val in self . job_vars . items ( ) :
body = body . replace ( key , val )
return body |
def compare_ecp_pots ( potential1 , potential2 , compare_meta = False , rel_tol = 0.0 ) :
'''Compare two ecp potentials for approximate equality
( exponents / coefficients are within a tolerance )
If compare _ meta is True , the metadata is also compared for exact equality .''' | if potential1 [ 'angular_momentum' ] != potential2 [ 'angular_momentum' ] :
return False
rexponents1 = potential1 [ 'r_exponents' ]
rexponents2 = potential2 [ 'r_exponents' ]
gexponents1 = potential1 [ 'gaussian_exponents' ]
gexponents2 = potential2 [ 'gaussian_exponents' ]
coefficients1 = potential1 [ 'coefficient... |
def main ( ) :
"""NAME
di _ eq . py
DESCRIPTION
converts dec , inc pairs to x , y pairs using equal area projection
NB : do only upper or lower hemisphere at a time : does not distinguish between up and down .
SYNTAX
di _ eq . py [ command line options ] [ < filename ]
OPTIONS
- h prints help messag... | out = ""
UP = 0
if '-h' in sys . argv :
print ( main . __doc__ )
sys . exit ( )
if '-f' in sys . argv :
ind = sys . argv . index ( '-f' )
file = sys . argv [ ind + 1 ]
DI = numpy . loadtxt ( file , dtype = numpy . float )
else :
DI = numpy . loadtxt ( sys . stdin , dtype = numpy . float )
# ... |
def _import ( self ) :
"""Makes imports
: return :""" | import os . path
import gspread
self . path = os . path
self . gspread = gspread
self . _login ( ) |
def reduce ( self , values , inplace = True ) :
"""Reduces the factor to the context of the given variable values .
Parameters
values : list , array - like
A list of tuples of the form ( variable _ name , variable _ value ) .
inplace : boolean
If inplace = True it will modify the factor itself , else woul... | phi = self if inplace else self . copy ( )
phi . distribution = phi . distribution . reduce ( values , inplace = False )
if not inplace :
return phi |
def hidden_from ( self , a , b ) :
"""Return True if ` ` a ` ` is hidden in a different box than ` ` b ` ` .""" | return a in self . hidden_indices and not self . in_same_box ( a , b ) |
def get_sensor_data ( ** kwargs ) :
'''Get sensor readings
Iterates sensor reading objects
: param kwargs :
- api _ host = 127.0.0.1
- api _ user = admin
- api _ pass = example
- api _ port = 623
- api _ kg = None
CLI Example :
. . code - block : : bash
salt - call ipmi . get _ sensor _ data api... | import ast
with _IpmiCommand ( ** kwargs ) as s :
data = { }
for reading in s . get_sensor_data ( ) :
if reading :
r = ast . literal_eval ( repr ( reading ) )
data [ r . pop ( 'name' ) ] = r
return data |
def calculate_bucket_level ( k , b ) :
"""Calculate the level in which a 0 - based bucket
lives inside of a k - ary heap .""" | assert k >= 2
if k == 2 :
return log2floor ( b + 1 )
v = ( k - 1 ) * ( b + 1 ) + 1
h = 0
while k ** ( h + 1 ) < v :
h += 1
return h |
def reciprocal_remove ( self ) :
"""Removes results rows for which the n - gram is not present in
at least one text in each labelled set of texts .""" | self . _logger . info ( 'Removing n-grams that are not attested in all labels' )
self . _matches = self . _reciprocal_remove ( self . _matches ) |
def virtual ( opts , virtualname , filename ) :
'''Returns the _ _ virtual _ _ .''' | if ( ( HAS_NAPALM and NAPALM_MAJOR >= 2 ) or HAS_NAPALM_BASE ) and ( is_proxy ( opts ) or is_minion ( opts ) ) :
return virtualname
else :
return ( False , ( '"{vname}"" {filename} cannot be loaded: ' 'NAPALM is not installed: ``pip install napalm``' ) . format ( vname = virtualname , filename = '({filename})' ... |
def get_storage_pools ( self , id_or_uri ) :
"""Gets a list of Storage pools . Returns a list of storage pools belonging to the storage system referred by the
Path property { ID } parameter or URI .
Args :
id _ or _ uri : Can be either the storage system ID ( serial number ) or the storage system URI .
Retu... | uri = self . _client . build_uri ( id_or_uri ) + "/storage-pools"
return self . _client . get ( uri ) |
def check_covariance_Kgrad_x ( covar , relchange = 1E-5 , threshold = 1E-2 , check_diag = True ) :
"""check _ covariance _ Kgrad _ x ( ACovarianceFunction covar , limix : : mfloat _ t relchange = 1E - 5 , limix : : mfloat _ t threshold = 1E - 2 , bool check _ diag = True ) - > bool
Parameters
covar : limix : : ... | return _core . ACovarianceFunction_check_covariance_Kgrad_x ( covar , relchange , threshold , check_diag ) |
def _py2round ( x ) :
"""This function returns a rounded up value of the argument , similar
to Python 2.""" | if hasattr ( x , '__iter__' ) :
rx = np . empty_like ( x )
m = x >= 0.0
rx [ m ] = np . floor ( x [ m ] + 0.5 )
m = np . logical_not ( m )
rx [ m ] = np . ceil ( x [ m ] - 0.5 )
return rx
else :
if x >= 0.0 :
return np . floor ( x + 0.5 )
else :
return np . ceil ( x - 0.5... |
def _check_spades_log_file ( logfile ) :
'''SPAdes can fail with a strange error . Stop everything if this happens''' | f = pyfastaq . utils . open_file_read ( logfile )
for line in f :
if line . startswith ( '== Error == system call for:' ) and line . rstrip ( ) . endswith ( 'finished abnormally, err code: -7' ) :
pyfastaq . utils . close ( f )
print ( 'Error running SPAdes. Cannot continue. This is the error from ... |
def fill_subparser ( subparser ) :
"""Sets up a subparser to convert the ILSVRC2012 dataset files .
Parameters
subparser : : class : ` argparse . ArgumentParser `
Subparser handling the ` ilsvrc2012 ` command .""" | subparser . add_argument ( "--shuffle-seed" , help = "Seed to use for randomizing order of the " "training set on disk." , default = config . default_seed , type = int , required = False )
return convert_ilsvrc2012 |
def set_value ( self , value : str ) :
"""Sets the displayed digits based on the value string .
: param value : a string containing an integer or float value
: return : None""" | [ digit . clear ( ) for digit in self . _digits ]
grouped = self . _group ( value )
# return the parts , reversed
digits = self . _digits [ : : - 1 ]
# reverse the digits
# fill from right to left
has_period = False
for i , digit_value in enumerate ( grouped ) :
try :
if has_period :
digits [ i ... |
def resolve ( self , uri = None , ** parts ) :
"""Attempt to resolve a new URI given an updated URI , partial or complete .""" | if uri :
result = self . __class__ ( urljoin ( str ( self ) , str ( uri ) ) )
else :
result = self . __class__ ( self )
for part , value in parts . items ( ) :
if part not in self . __all_parts__ :
raise TypeError ( "Unknown URI component: " + part )
setattr ( result , part , value )
return resu... |
def disable ( cls , user_id , github_id , name ) :
"""Disable webhooks for a repository .
Disables the webhook from a repository if it exists in the DB .
: param user _ id : User identifier .
: param repo _ id : GitHub id of the repository .
: param name : Fully qualified name of the repository .""" | repo = cls . get ( user_id , github_id = github_id , name = name )
repo . hook = None
repo . user_id = None
return repo |
def select_default ( self ) :
"""Resets the combo box to the original " selected " value from the
constructor ( or the first value if no selected value was specified ) .""" | if self . _default is None :
if not self . _set_option_by_index ( 0 ) :
utils . error_format ( self . description + "\n" + "Unable to select default option as the Combo is empty" )
else :
if not self . _set_option ( self . _default ) :
utils . error_format ( self . description + "\n" + "Unable t... |
def _GetUncompressedStreamSize ( self ) :
"""Retrieves the uncompressed stream size .
Returns :
int : uncompressed stream size .""" | self . _file_object . seek ( 0 , os . SEEK_SET )
self . _decompressor = self . _GetDecompressor ( )
self . _uncompressed_data = b''
compressed_data_offset = 0
compressed_data_size = self . _file_object . get_size ( )
uncompressed_stream_size = 0
while compressed_data_offset < compressed_data_size :
read_count = sel... |
def mod_liu ( q , w ) :
r"""Joint significance of statistics derived from chi2 - squared distributions .
Parameters
q : float
Test statistics .
w : array _ like
Weights of the linear combination .
Returns
float
Estimated p - value .""" | q = asarray ( q , float )
if not all ( isfinite ( atleast_1d ( q ) ) ) :
raise ValueError ( "There are non-finite values in `q`." )
w = asarray ( w , float )
if not all ( isfinite ( atleast_1d ( w ) ) ) :
raise ValueError ( "There are non-finite values in `w`." )
d = sum ( w )
w /= d
c1 = sum ( w )
c2 = sum ( w... |
def mk_definition ( defn ) :
"""Instantiates a struct or SBP message specification from a parsed
" AST " of a struct or message .
Parameters
defn : dict
Returns
A Definition or a specialization of a definition , like a Struct""" | assert len ( defn ) == 1
identifier , contents = next ( iter ( defn . items ( ) ) )
fs = [ mk_field ( f ) for f in contents . get ( 'fields' , [ ] ) ]
return sbp . resolve_type ( sbp . Definition ( identifier = identifier , sbp_id = contents . get ( 'id' , None ) , short_desc = contents . get ( 'short_desc' , None ) , ... |
def validate_depth ( self , depth : DepthDefinitionType ) -> Optional [ int ] :
"""Converts the depth to int and validates that the value can be used .
: raise ValueError : If the provided depth is not valid""" | if depth is not None :
try :
depth = int ( depth )
except ValueError :
raise ValueError ( f"Depth '{depth}' can't be converted to int." )
if depth < 1 :
raise ValueError ( f"Depth '{depth}' isn't a positive number" )
return depth
return None |
def get_data_by_time ( path , columns , dates , start_time = '00:00' , end_time = '23:59' ) :
"""Extract columns of data from a ProCoDA datalog based on date ( s ) and time ( s )
Note : Column 0 is time . The first data column is column 1.
: param path : The path to the folder containing the ProCoDA data file (... | data = data_from_dates ( path , dates )
first_time_column = pd . to_numeric ( data [ 0 ] . iloc [ : , 0 ] )
start = max ( day_fraction ( start_time ) , first_time_column [ 0 ] )
start_idx = time_column_index ( start , first_time_column )
end_idx = time_column_index ( day_fraction ( end_time ) , pd . to_numeric ( data [... |
def get_link ( self , peer ) :
"""Retrieves the link to the given peer""" | for access in peer . accesses :
if access . type == 'mqtt' :
break
else : # No MQTT access found
return None
# Get server access tuple
server = ( access . server . host , access . server . port )
with self . __lock :
try : # Get existing link
return self . _links [ server ]
except KeyErr... |
def QueryService ( svc_name ) :
"""Query service and get its config .""" | hscm = win32service . OpenSCManager ( None , None , win32service . SC_MANAGER_ALL_ACCESS )
result = None
try :
hs = win32serviceutil . SmartOpenService ( hscm , svc_name , win32service . SERVICE_ALL_ACCESS )
result = win32service . QueryServiceConfig ( hs )
win32service . CloseServiceHandle ( hs )
finally :... |
def default_callback ( self , text ) :
"""Default clean the \\ n in text .""" | text = text . replace ( "\r\n" , "\n" )
text = "%s\n" % text
flush_print ( text , sep = "" , end = "" )
return text |
def splitpath ( path ) :
"""Recursively split a filepath into all directories and files .""" | head , tail = os . path . split ( path )
if tail == '' :
return head ,
elif head == '' :
return tail ,
else :
return splitpath ( head ) + ( tail , ) |
def sample_indexes_by_distribution ( indexes , distributions , nsample ) :
"""Samples trajectory / time indexes according to the given probability distributions
Parameters
indexes : list of ndarray ( ( N _ i , 2 ) )
For each state , all trajectory and time indexes where this state occurs .
Each matrix has a... | # how many states in total ?
n = len ( indexes )
for dist in distributions :
if len ( dist ) != n :
raise ValueError ( 'Size error: Distributions must all be of length n (number of states).' )
# list of states
res = np . ndarray ( ( len ( distributions ) ) , dtype = object )
for i in range ( len ( distribut... |
def _rm_is_alignment_line ( parts , s1_name , s2_name ) :
"""return true if the tokenized line is a repeatmasker alignment line .
: param parts : the line , already split into tokens around whitespace
: param s1 _ name : the name of the first sequence , as extracted from the header
of the element this line is... | if len ( parts ) < 2 :
return False
if _rm_name_match ( parts [ 0 ] , s1_name ) :
return True
if ( _rm_name_match ( parts [ 0 ] , s2_name ) or ( parts [ 0 ] == "C" and _rm_name_match ( parts [ 1 ] , s2_name ) ) ) :
return True
return False |
def rank ( self ) :
"""Returns the item ' s rank ( if it has one )
as a dict that includes required score , name , and level .""" | if self . _rank != { } : # Don ' t bother doing attribute lookups again
return self . _rank
try : # The eater determining the rank
levelkey , typename , count = self . kill_eaters [ 0 ]
except IndexError : # Apparently no eater available
self . _rank = None
return None
rankset = self . _ranks . get ( le... |
def parse_angular_length_quantity ( string_rep ) :
"""Given a string that is a number and a unit , return a
Quantity of that string . Raise an Error If there is no unit . e . g . :
50 " - > 50 * u . arcsec
50 - > CRTFRegionParserError : Units must be specified for 50""" | unit_mapping = { 'deg' : u . deg , 'rad' : u . rad , 'arcmin' : u . arcmin , 'arcsec' : u . arcsec , 'pix' : u . dimensionless_unscaled , '"' : u . arcsec , "'" : u . arcmin , }
regex_str = re . compile ( r'([0-9+,-.]*)(.*)' )
str = regex_str . search ( string_rep )
unit = str . group ( 2 )
if unit :
if unit in uni... |
def doesnt_have ( self , relation , boolean = 'and' , extra = None ) :
"""Add a relationship count to the query .
: param relation : The relation to count
: type relation : str
: param boolean : The boolean value
: type boolean : str
: param extra : The extra query
: type extra : Builder or callable
:... | return self . has ( relation , '<' , 1 , boolean , extra ) |
def cmd_certclone ( hostname , port , keyfile , certfile , copy_extensions , expired , verbose ) :
"""Connect to an SSL / TLS server , get the certificate and generate
a certificate with the same options and field values .
Note : The generated certificate is invalid , but can be used for social engineering atta... | context = ssl . create_default_context ( )
with socket . create_connection ( ( hostname , port ) , timeout = 3 ) as sock :
with context . wrap_socket ( sock , server_hostname = hostname ) as ssock :
original = ssock . getpeercert ( binary_form = True )
key , cert = certclone ( original , copy_extensions = c... |
def escape_filename_sh_ansic ( name ) :
"""Return an ansi - c shell - escaped version of a filename .""" | out = [ ]
# gather the escaped characters into a list
for ch in name :
if ord ( ch ) < 32 :
out . append ( "\\x%02x" % ord ( ch ) )
elif ch == '\\' :
out . append ( '\\\\' )
else :
out . append ( ch )
# slap them back together in an ansi - c quote $ ' . . . '
return "$'" + "" . join ... |
def hex_to_rgb ( color ) :
"""Converts from hex to rgb
Parameters :
color : string
Color representation on hex or rgb
Example :
hex _ to _ rgb ( ' # E1E5ED ' )
hex _ to _ rgb ( ' # f03 ' )""" | color = normalize ( color )
color = color [ 1 : ]
# return ' rgb ' + str ( tuple ( ord ( c ) for c in color . decode ( ' hex ' ) ) )
return 'rgb' + str ( ( int ( color [ 0 : 2 ] , base = 16 ) , int ( color [ 2 : 4 ] , base = 16 ) , int ( color [ 4 : 6 ] , base = 16 ) ) ) |
def sg_sum ( tensor , opt ) :
r"""Computes the sum of elements across axis of a tensor .
See ` tf . reduce _ sum ( ) ` in tensorflow .
Args :
tensor : A ` Tensor ` with zero - padding ( automatically given by chain ) .
opt :
axis : A tuple / list of integers or an integer . The axis to reduce .
keep _ d... | return tf . reduce_sum ( tensor , axis = opt . axis , keep_dims = opt . keep_dims , name = opt . name ) |
def create_plot_option_dicts ( info , marker_types = None , colors = None , line_dash = None , size = None ) :
"""Create two dictionaries with plot - options .
The first iterates colors ( based on group - number ) , the second iterates
through marker types .
Returns : group _ styles ( dict ) , sub _ group _ s... | logging . debug ( " - creating plot-options-dict (for bokeh)" )
# Current only works for bokeh
if marker_types is None :
marker_types = [ "circle" , "square" , "triangle" , "invertedtriangle" , "diamond" , "cross" , "asterix" ]
if line_dash is None :
line_dash = [ 0 , 0 ]
if size is None :
size = 10
grou... |
def identifiers ( dataset_uri ) :
"""List the item identifiers in the dataset .""" | dataset = dtoolcore . DataSet . from_uri ( dataset_uri )
for i in dataset . identifiers :
click . secho ( i ) |
def get_module ( path ) :
"""A modified duplicate from Django ' s built in backend
retriever .
slugify = get _ module ( ' django . template . defaultfilters . slugify ' )""" | try :
from importlib import import_module
except ImportError as e :
from django . utils . importlib import import_module
try :
mod_name , func_name = path . rsplit ( '.' , 1 )
mod = import_module ( mod_name )
except ImportError as e :
raise ImportError ( 'Error importing alert function {0}: "{1}"' .... |
def show_pricing ( kwargs = None , call = None ) :
'''Show pricing for a particular profile . This is only an estimate , based on
unofficial pricing sources .
. . versionadded : : 2015.8.0
CLI Example :
. . code - block : : bash
salt - cloud - f show _ pricing my - linode - config profile = my - linode - ... | if call != 'function' :
raise SaltCloudException ( 'The show_instance action must be called with -f or --function.' )
profile = __opts__ [ 'profiles' ] . get ( kwargs [ 'profile' ] , { } )
if not profile :
raise SaltCloudNotFound ( 'The requested profile was not found.' )
# Make sure the profile belongs to Lino... |
def serial_udb_extra_f13_encode ( self , sue_week_no , sue_lat_origin , sue_lon_origin , sue_alt_origin ) :
'''Backwards compatible version of SERIAL _ UDB _ EXTRA F13 : format
sue _ week _ no : Serial UDB Extra GPS Week Number ( int16 _ t )
sue _ lat _ origin : Serial UDB Extra MP Origin Latitude ( int32 _ t )... | return MAVLink_serial_udb_extra_f13_message ( sue_week_no , sue_lat_origin , sue_lon_origin , sue_alt_origin ) |
def default_pixmap ( self , value ) :
"""Setter for * * self . _ _ default _ pixmap * * attribute .
: param value : Attribute value .
: type value : QPixmap""" | if value is not None :
assert type ( value ) is QPixmap , "'{0}' attribute: '{1}' type is not 'QPixmap'!" . format ( "default_pixmap" , value )
self . __default_pixmap = value |
def register_account ( self , account , portfolio_cookie = None ) :
'''注册一个account到portfolio组合中
account 也可以是一个策略类 , 实现其 on _ bar 方法
: param account : 被注册的account
: return :''' | # 查找 portfolio
if len ( self . portfolio_list . keys ( ) ) < 1 :
po = self . new_portfolio ( )
elif portfolio_cookie is not None :
po = self . portfolio_list [ portfolio_cookie ]
else :
po = list ( self . portfolio_list . values ( ) ) [ 0 ]
# 把account 添加到 portfolio中去
po . add_account ( account )
return ( po... |
def get_event ( self , client , check ) :
"""Returns an event for a given client & check name .""" | data = self . _request ( 'GET' , '/events/{}/{}' . format ( client , check ) )
return data . json ( ) |
def complex_check ( * args , func = None ) :
"""Check if arguments are complex numbers .""" | func = func or inspect . stack ( ) [ 2 ] [ 3 ]
for var in args :
if not isinstance ( var , numbers . Complex ) :
name = type ( var ) . __name__
raise ComplexError ( f'Function {func} expected complex number, {name} got instead.' ) |
def unpack_float16 ( src ) :
"""Read and unpack a 16b float .
The structure is :
- 1 bit for the sign
. 5 bits for the exponent , with an exponent bias of 16
- 10 bits for the mantissa""" | bc = BitConsumer ( src )
sign = bc . u_get ( 1 )
exponent = bc . u_get ( 5 )
mantissa = bc . u_get ( 10 )
exponent -= 16
mantissa /= 2 ** 10
num = ( - 1 ** sign ) * mantissa * ( 10 ** exponent )
return num |
def data_iterator_csv_dataset ( uri , batch_size , shuffle = False , rng = None , normalize = True , with_memory_cache = True , with_file_cache = True , cache_dir = None , epoch_begin_callbacks = [ ] , epoch_end_callbacks = [ ] ) :
'''data _ iterator _ csv _ dataset
Get data directly from a dataset provided as a ... | ds = CsvDataSource ( uri , shuffle = shuffle , rng = rng , normalize = normalize )
return data_iterator ( ds , batch_size = batch_size , with_memory_cache = with_memory_cache , with_file_cache = with_file_cache , cache_dir = cache_dir , epoch_begin_callbacks = epoch_begin_callbacks , epoch_end_callbacks = epoch_end_cal... |
def execute ( self , conn , daoinput , transaction = False ) :
"""required keys :
migration _ status , migration _ request _ id""" | if not conn :
dbsExceptionHandler ( "dbsException-failed-connect2host" , "Oracle/MigrationRequests/UpdateRequestStatus. Expects db connection from upper layer." , self . logger . exception )
if daoinput [ 'migration_status' ] == 1 :
sql = self . sql2
elif daoinput [ 'migration_status' ] == 2 :
sql = self . ... |
def render_to_string ( template_name , context = None , request = None , using = None ) :
"""Loads a template and renders it with a context . Returns a string .
template _ name may be a string or a list of strings .""" | if isinstance ( template_name , ( list , tuple ) ) :
template = select_template ( template_name , using = using )
else :
template = get_template ( template_name , using = using )
return template . render ( context , request ) |
def update_namelist_file ( self , rapid_namelist_file , new_namelist_file = None ) :
"""Update existing namelist file with new parameters
Parameters
rapid _ namelist _ file : str
Path of namelist file to use in the simulation . It will be
updated with any parameters added to the RAPID manager .
new _ name... | if os . path . exists ( rapid_namelist_file ) and rapid_namelist_file :
log ( "Adding missing inputs from RAPID input file ..." , "INFO" )
with open ( rapid_namelist_file , 'r' ) as old_file :
for line in old_file :
line = line . strip ( )
if not line [ : 1 ] . isalpha ( ) or not... |
def get_pmt ( self , dom_id , channel_id ) :
"""Return PMT with DOM ID and DAQ channel ID""" | du , floor , _ = self . doms [ dom_id ]
pmt = self . pmts [ self . _pmt_index_by_omkey [ ( du , floor , channel_id ) ] ]
return pmt |
def copy_from ( self , other ) :
"""Copy other onto self .""" | self . verbose , self . quiet , self . path , self . name , self . tracing = other . verbose , other . quiet , other . path , other . name , other . tracing |
def form_fields ( self ) :
"""Return fields of default form .
Fill some fields with reasonable values .""" | fields = dict ( self . form . fields )
# pylint : disable = no - member
fields_to_remove = set ( )
for key , val in list ( fields . items ( ) ) :
if isinstance ( val , CheckboxValues ) :
if not len ( val ) : # pylint : disable = len - as - condition
del fields [ key ]
elif len ( val ) ==... |
def put ( self , request , bot_id , id , format = None ) :
"""Update existing handler
serializer : HandlerUpdateSerializer
responseMessages :
- code : 401
message : Not authenticated
- code : 400
message : Not valid request""" | return super ( HandlerDetail , self ) . put ( request , bot_id , id , format ) |
def disable_reporting ( self ) :
"""Call this method to explicitly disable reporting .
The current report will be discarded , along with the previously
recorded ones that haven ' t been uploaded . The configuration is updated
so that future runs do not record or upload reports .""" | if self . status == Stats . DISABLED :
return
if not self . disableable :
logger . critical ( "Can't disable reporting" )
return
self . status = Stats . DISABLED
self . write_config ( self . status )
if os . path . exists ( self . location ) :
old_reports = [ f for f in os . listdir ( self . location ) ... |
async def encrypt ( self , message : bytes , authn : bool = False , recip : str = None ) -> bytes :
"""Encrypt plaintext for owner of DID or verification key , anonymously or via
authenticated encryption scheme . If given DID , first check wallet and then pool
for corresponding verification key .
Raise Wallet... | LOGGER . debug ( 'BaseAnchor.encrypt >>> message: %s, authn: %s, recip: %s' , message , authn , recip )
if not self . wallet . handle :
LOGGER . debug ( 'BaseAnchor.encrypt <!< Wallet %s is closed' , self . name )
raise WalletState ( 'Wallet {} is closed' . format ( self . name ) )
rv = await self . wallet . en... |
def _send_post ( self , blogname , params ) :
"""Formats parameters and sends the API request off . Validates
common and per - post - type parameters and formats your tags for you .
: param blogname : a string , the blogname of the blog you are posting to
: param params : a dict , the key - value of the param... | url = "/v2/blog/{}/post" . format ( blogname )
valid_options = self . _post_valid_options ( params . get ( 'type' , None ) )
if len ( params . get ( "tags" , [ ] ) ) > 0 : # Take a list of tags and make them acceptable for upload
params [ 'tags' ] = "," . join ( params [ 'tags' ] )
return self . send_api_request ( ... |
def findNestedDirectories ( self , lst ) :
'''Recursive helper function for finding nested directories . If this node is a
directory node , it is appended to ` ` lst ` ` . Each node also calls each of its
child ` ` findNestedDirectories ` ` with the same list .
: Parameters :
` ` lst ` ` ( list )
The list... | if self . kind == "dir" :
lst . append ( self )
for c in self . children :
c . findNestedDirectories ( lst ) |
def get_all ( self , page = None , per_page = None , include_totals = False ) :
"""Retrieves all resource servers
Args :
page ( int , optional ) : The result ' s page number ( zero based ) .
per _ page ( int , optional ) : The amount of entries per page .
include _ totals ( bool , optional ) : True if the q... | params = { 'page' : page , 'per_page' : per_page , 'include_totals' : str ( include_totals ) . lower ( ) }
return self . client . get ( self . _url ( ) , params = params ) |
def ssml_phoneme ( self , words , alphabet = None , ph = None , ** kwargs ) :
"""Create a < Phoneme > element
: param words : Words to speak
: param alphabet : Specify the phonetic alphabet
: param ph : Specifiy the phonetic symbols for pronunciation
: param kwargs : additional attributes
: returns : < Ph... | return self . nest ( SsmlPhoneme ( words , alphabet = alphabet , ph = ph , ** kwargs ) ) |
def train_model ( self , dataset_id , model_name , token = None , url = API_TRAIN_MODEL ) :
"""Train a model given a specifi dataset previously created
: param dataset _ id : string , the id of a previously created dataset
: param model _ name : string , what you will call this model
attention : This may take... | auth = 'Bearer ' + self . check_for_token ( token )
m = MultipartEncoder ( fields = { 'name' : model_name , 'datasetId' : dataset_id } )
h = { 'Authorization' : auth , 'Cache-Control' : 'no-cache' , 'Content-Type' : m . content_type }
the_url = url
r = requests . post ( the_url , headers = h , data = m )
return r |
def namespace ( self ) :
"""Return a dictionary representing the namespace which should be
available to the user .""" | self . _ns = { 'db' : self . store , 'store' : store , 'autocommit' : False , }
return self . _ns |
def load ( self , path = None , ignore_errors = True , block_user_signals = False ) :
"""Loads all the parameters from a databox text file . If path = None ,
loads from self . _ autosettings _ path ( provided this is not None ) .
Parameters
path = None
Path to load the settings from . If None , will load fr... | if path == None : # Bail if there is no path
if self . _autosettings_path == None :
return self
# Get the gui settings directory
gui_settings_dir = _os . path . join ( _cwd , 'egg_settings' )
# Get the final path
path = _os . path . join ( gui_settings_dir , self . _autosettings_path )
# mak... |
def copy_content ( origin , dstPath , blockSize , mode ) :
'''copy the content of ` origin ` to ` dstPath ` in a safe manner .
this function will first copy the content to a temporary file
and then move it atomically to the requested destination .
if some error occurred during content copy or file movement
... | tmpFD , tmpPath = tempfile . mkstemp ( prefix = os . path . basename ( dstPath ) + "_" , suffix = '.tmp' , dir = os . path . dirname ( dstPath ) )
try :
try : # change mode of the temp file
oldmask = os . umask ( 0 )
try :
os . chmod ( tmpPath , mode )
finally :
os . ... |
def terminate_manager ( self ) :
"""* * Purpose * * : Method to terminate the tmgr process . This method is
blocking as it waits for the tmgr process to terminate ( aka join ) .""" | try :
if self . _tmgr_process :
if not self . _tmgr_terminate . is_set ( ) :
self . _tmgr_terminate . set ( )
if self . check_manager ( ) :
self . _tmgr_process . join ( )
self . _tmgr_process = None
self . _logger . info ( 'Task manager process closed' )
... |
def run ( self , scale_out , sectors = 'all' ) :
"""Evolve the Wilson coefficients to the scale ` scale _ out ` .
Parameters :
- scale _ out : output scale
- sectors : optional . If provided , must be a tuple of strings
corresponding to WCxf sector names . Only Wilson coefficients
belonging to these secto... | C_out = self . _run_dict ( scale_out , sectors = sectors )
all_wcs = set ( wcxf . Basis [ self . eft , 'JMS' ] . all_wcs )
# to speed up lookup
C_out = { k : v for k , v in C_out . items ( ) if v != 0 and k in all_wcs }
return wcxf . WC ( eft = self . eft , basis = 'JMS' , scale = scale_out , values = wcxf . WC . dict2... |
def prefix_lines ( lines , prefix ) :
"""Add the prefix to each of the lines .
> > > prefix _ lines ( [ ' foo ' , ' bar ' ] , ' ' )
[ ' foo ' , ' bar ' ]
> > > prefix _ lines ( ' foo \\ nbar ' , ' ' )
[ ' foo ' , ' bar ' ]
: param list or str lines : A string or a list of strings . If a string is
passed... | if isinstance ( lines , bytes ) :
lines = lines . decode ( 'utf-8' )
if isinstance ( lines , str ) :
lines = lines . splitlines ( )
return [ prefix + line for line in lines ] |
def maintenance ( self , on = True ) :
"""Toggles maintenance mode .""" | r = self . _h . _http_resource ( method = 'POST' , resource = ( 'apps' , self . name , 'server' , 'maintenance' ) , data = { 'maintenance_mode' : int ( on ) } )
return r . ok |
def round_sig ( x , n , scien_notation = False ) :
if x < 0 :
x = x * - 1
symbol = '-'
else :
symbol = ''
'''round floating point x to n significant figures''' | if type ( n ) is not types . IntType :
raise TypeError , "n must be an integer"
try :
x = float ( x )
except :
raise TypeError , "x must be a floating point object"
form = "%0." + str ( n - 1 ) + "e"
st = form % x
num , expo = epat . findall ( st ) [ 0 ]
expo = int ( expo )
fs = string . split ( num , '.' )... |
def create_qualification_type ( Name = None , Keywords = None , Description = None , QualificationTypeStatus = None , RetryDelayInSeconds = None , Test = None , AnswerKey = None , TestDurationInSeconds = None , AutoGranted = None , AutoGrantedValue = None ) :
"""The CreateQualificationType operation creates a new Q... | pass |
def spawn_server_api ( api_name , app , api_spec , error_callback , decorator ) :
"""Take a a Flask app and a swagger file in YAML format describing a REST
API , and populate the app with routes handling all the paths and methods
declared in the swagger file .
Also handle marshaling and unmarshaling between j... | def mycallback ( endpoint ) :
handler_func = get_function ( endpoint . handler_server )
# Generate api endpoint around that handler
handler_wrapper = _generate_handler_wrapper ( api_name , api_spec , endpoint , handler_func , error_callback , decorator )
# Bind handler to the API path
log . info ( "... |
def drop_database ( self , name , force = False ) :
"""Drop an MapD database
Parameters
name : string
Database name
force : boolean , default False
If False and there are any tables in this database , raises an
IntegrityError""" | tables = [ ]
if not force or self . database ( name ) :
tables = self . list_tables ( database = name )
if not force and len ( tables ) :
raise com . IntegrityError ( 'Database {0} must be empty before being dropped, or set ' 'force=True' . format ( name ) )
statement = ddl . DropDatabase ( name )
self . _execu... |
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