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def write ( self , data , offset = 0 , write_through = False , unbuffered = False , wait = True , send = True ) : """Writes data to an opened file . Supports out of band send function , call this function with send = False to return a tuple of ( SMBWriteRequest , receive _ func ) instead of sending the the re...
data_len = len ( data ) if data_len > self . connection . max_write_size : raise SMBException ( "The requested write length %d is greater than " "the maximum negotiated write size %d" % ( data_len , self . connection . max_write_size ) ) write = SMB2WriteRequest ( ) write [ 'length' ] = len ( data ) write [ 'offset...
def decode_body ( cls , header , f ) : """Generates a ` MqttUnsuback ` packet given a ` MqttFixedHeader ` . This method asserts that header . packet _ type is ` unsuback ` . Parameters header : MqttFixedHeader f : file Object with a read method . Raises DecodeError When there are extra bytes at th...
assert header . packet_type == MqttControlPacketType . unsuback decoder = mqtt_io . FileDecoder ( mqtt_io . LimitReader ( f , header . remaining_len ) ) packet_id , = decoder . unpack ( mqtt_io . FIELD_PACKET_ID ) if header . remaining_len != decoder . num_bytes_consumed : raise DecodeError ( 'Extra bytes at end of...
def need_update ( a , b ) : """Check if file a is newer than file b and decide whether or not to update file b . Can generalize to two lists ."""
a = listify ( a ) b = listify ( b ) return any ( ( not op . exists ( x ) ) for x in b ) or all ( ( os . stat ( x ) . st_size == 0 for x in b ) ) or any ( is_newer_file ( x , y ) for x in a for y in b )
def get_urls ( self ) : """Adds a url to move nodes to this admin"""
urls = super ( TreeAdmin , self ) . get_urls ( ) if django . VERSION < ( 1 , 10 ) : from django . views . i18n import javascript_catalog jsi18n_url = url ( r'^jsi18n/$' , javascript_catalog , { 'packages' : ( 'treebeard' , ) } ) else : from django . views . i18n import JavaScriptCatalog jsi18n_url = url...
def _load_build ( self ) : """See ` pickle . py ` in Python ' s source code ."""
# if the ctor . function ( penultimate on the stack ) is the ` Ref ` class . . . if isinstance ( self . stack [ - 2 ] , Ref ) : # Ref . _ _ setstate _ _ will know it ' s a remote ref if the state is a tuple self . stack [ - 1 ] = ( self . stack [ - 1 ] , self . node ) self . load_build ( ) # continue with t...
def _bind ( self , _descriptor ) : """Bind a ResponseObject to a given action descriptor . This updates the default HTTP response code and selects the appropriate content type and serializer for the response ."""
# If the method has a default code , use it self . _defcode = getattr ( _descriptor . method , '_wsgi_code' , 200 ) # Set up content type and serializer self . content_type , self . serializer = _descriptor . serializer ( self . req )
def search_debit ( ) : """Get one to ten debit ( s ) for a single User . parameters : - name : searchcd in : body description : The Debit ( s ) you ' d like to get . required : false schema : $ ref : ' # / definitions / SearchCD ' responses : '200 ' : description : the User ' s debit ( s ) sch...
sid = request . jws_payload [ 'data' ] . get ( 'id' ) address = request . jws_payload [ 'data' ] . get ( 'address' ) currency = request . jws_payload [ 'data' ] . get ( 'currency' ) network = request . jws_payload [ 'data' ] . get ( 'network' ) # reference = request . jws _ payload [ ' data ' ] . get ( ' reference ' ) ...
def cds_length_of_associated_transcript ( effect ) : """Length of coding sequence of transcript associated with effect , if there is one ( otherwise return 0 ) ."""
return apply_to_transcript_if_exists ( effect = effect , fn = lambda t : len ( t . coding_sequence ) if ( t . complete and t . coding_sequence ) else 0 , default = 0 )
def add_loaded_callback ( self , callback ) : """Add a callback to be run when the ALDB load is complete ."""
if callback not in self . _cb_aldb_loaded : self . _cb_aldb_loaded . append ( callback )
def autofit ( ts , maxp = 5 , maxd = 2 , maxq = 5 , sc = None ) : """Utility function to help in fitting an automatically selected ARIMA model based on approximate Akaike Information Criterion ( AIC ) values . The model search is based on the heuristic developed by Hyndman and Khandakar ( 2008 ) and described i...
assert sc != None , "Missing SparkContext" jmodel = sc . _jvm . com . cloudera . sparkts . models . ARIMA . autoFit ( _py2java ( sc , Vectors . dense ( ts ) ) , maxp , maxd , maxq ) return ARIMAModel ( jmodel = jmodel , sc = sc )
def _read_para_nat_traversal_mode ( self , code , cbit , clen , * , desc , length , version ) : """Read HIP NAT _ TRAVERSAL _ MODE parameter . Structure of HIP NAT _ TRAVERSAL _ MODE parameter [ RFC 5770 ] : 0 1 2 3 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 | Type | Length | | Reserv...
if clen % 2 != 0 : raise ProtocolError ( f'HIPv{version}: [Parano {code}] invalid format' ) _resv = self . _read_fileng ( 2 ) _mdid = list ( ) for _ in range ( ( clen - 2 ) // 2 ) : _mdid . append ( _MODE_ID . get ( self . _read_unpack ( 2 ) , 'Unassigned' ) ) nat_traversal_mode = dict ( type = desc , critical ...
def setup ( self , ** kwargs ) : '''This is called during production de - trending , prior to calling the : py : obj : ` Detrender . run ( ) ` method . : param tuple cdpp _ range : If : py : obj : ` parent _ model ` is set , neighbors are selected only if their de - trended CDPPs fall within this range . Defaul...
# Get neighbors self . parent_model = kwargs . get ( 'parent_model' , None ) neighbors = kwargs . get ( 'neighbors' , 10 ) neighbors_data = kwargs . get ( 'neighbors_data' , None ) if hasattr ( neighbors , '__len__' ) : self . neighbors = neighbors else : num_neighbors = neighbors self . neighbors = self . ...
def delete_all_volumes ( self ) : """Remove all the volumes . Only the manager nodes can delete a volume"""
# Raise an exception if we are not a manager if not self . _manager : raise RuntimeError ( 'Volumes can only be deleted ' 'on swarm manager nodes' ) volume_list = self . get_volume_list ( ) for volumes in volume_list : # Remove all the services self . _api_client . remove_volume ( volumes , force = True )
def getargspec ( method ) : """Drill through layers of decorators attempting to locate the actual argspec for a method ."""
argspec = _getargspec ( method ) args = argspec [ 0 ] if args and args [ 0 ] == 'self' : return argspec if hasattr ( method , '__func__' ) : method = method . __func__ func_closure = six . get_function_closure ( method ) # NOTE ( sileht ) : if the closure is None we cannot look deeper , # so return actual argsp...
def post ( self , endpoint , body = None , timeout = None , allow_redirects = None , validate = True , headers = None , ) : """* Sends a POST request to the endpoint . * The endpoint is joined with the URL given on library init ( if any ) . If endpoint starts with ` ` http : / / ` ` or ` ` https : / / ` ` , it ...
endpoint = self . _input_string ( endpoint ) request = deepcopy ( self . request ) request [ "method" ] = "POST" request [ "body" ] = self . input ( body ) if allow_redirects is not None : request [ "allowRedirects" ] = self . _input_boolean ( allow_redirects ) if timeout is not None : request [ "timeout" ] = s...
def get_model_info ( self ) : ''': return : dictionary of information about this model'''
info = { } info [ 'model_name' ] = self . name info [ 'stages' ] = '->' . join ( [ repr ( s ) for s in self . _stages ] ) info [ 'sequence' ] = { 'index' : self . _current_index } return info
def metrics ( ref_time , ref_freqs , est_time , est_freqs , ** kwargs ) : """Compute multipitch metrics . All metrics are computed at the ' macro ' level such that the frame true positive / false positive / false negative rates are summed across time and the metrics are computed on the combined values . Examp...
validate ( ref_time , ref_freqs , est_time , est_freqs ) # resample est _ freqs if est _ times is different from ref _ times if est_time . size != ref_time . size or not np . allclose ( est_time , ref_time ) : warnings . warn ( "Estimate times not equal to reference times. " "Resampling to common time base." ) ...
def mase ( simulated_array , observed_array , m = 1 , replace_nan = None , replace_inf = None , remove_neg = False , remove_zero = False ) : """Compute the mean absolute scaled error between the simulated and observed data . . . image : : / pictures / MASE . png * * Range : * * * * Notes : * * Parameters ...
# Checking and cleaning the data simulated_array , observed_array = treat_values ( simulated_array , observed_array , replace_nan = replace_nan , replace_inf = replace_inf , remove_neg = remove_neg , remove_zero = remove_zero ) start = m end = simulated_array . size - m a = np . mean ( np . abs ( simulated_array - obse...
def search_by_category ( self , category_id , limit = 0 , order_by = None , sort_order = None , filter = None ) : """Search for series that belongs to a category id . Returns information about matching series in a DataFrame . Parameters category _ id : int category id , e . g . , 32145 limit : int , optiona...
url = "%s/category/series?category_id=%d&" % ( self . root_url , category_id ) info = self . __get_search_results ( url , limit , order_by , sort_order , filter ) if info is None : raise ValueError ( 'No series exists for category id: ' + str ( category_id ) ) return info
def execute_cleanup_tasks ( ctx , cleanup_tasks , dry_run = False ) : """Execute several cleanup tasks as part of the cleanup . REQUIRES : ` ` clean ( ctx , dry _ run = False ) ` ` signature in cleanup tasks . : param ctx : Context object for the tasks . : param cleanup _ tasks : Collection of cleanup tasks (...
# pylint : disable = redefined - outer - name executor = Executor ( cleanup_tasks , ctx . config ) for cleanup_task in cleanup_tasks . tasks : print ( "CLEANUP TASK: %s" % cleanup_task ) executor . execute ( ( cleanup_task , dict ( dry_run = dry_run ) ) )
def set_stim_by_index ( self , index ) : """Sets the stimulus to be generated to the one referenced by index : param index : index number of stimulus to set from this class ' s internal list of stimuli : type index : int"""
# remove any current components self . stimulus . clearComponents ( ) # add one to index because of tone curve self . stimulus . insertComponent ( self . stim_components [ index ] )
def Indentation ( logical_line , previous_logical , indent_level , previous_indent_level ) : """Use two spaces per indentation level ."""
comment = '' if logical_line else ' (comment)' if indent_level % 2 : code = 'YCM111' if logical_line else 'YCM114' message = ' indentation is not a multiple of two spaces' + comment yield 0 , code + message if ( previous_logical . endswith ( ':' ) and ( indent_level - previous_indent_level != 2 ) ) : co...
def write_bed_with_trackline ( bed , out , trackline , add_chr = False ) : """Read a bed file and write a copy with a trackline . Here ' s a simple trackline example : ' track type = bed name = " cool " description = " A cool track . " ' Parameters bed : str Input bed file name . out : str Output bed fi...
df = pd . read_table ( bed , index_col = None , header = None ) bt = pbt . BedTool ( '\n' . join ( df . apply ( lambda x : '\t' . join ( x . astype ( str ) ) , axis = 1 ) ) + '\n' , from_string = True ) if add_chr : bt = add_chr_to_contig ( bt ) bt = bt . saveas ( out , trackline = trackline )
def results_cache_path ( self ) -> str : """Location where step report is cached between sessions to prevent loss of display data between runs ."""
if not self . project : return '' return os . path . join ( self . project . results_path , '.cache' , 'steps' , '{}.json' . format ( self . id ) )
def match ( self , pattern , context = None ) : """This method returns a ( possibly empty ) list of strings that match the regular expression ` ` pattern ` ` provided . You can also provide a ` ` context ` ` as described above . This method calls ` ` choices ` ` to get a list of all possible choices and the...
matches = [ ] regex = pattern if regex == '*' : regex = '.*' regex = re . compile ( regex ) for choice in self . choices ( context ) : if regex . search ( choice ) : matches . append ( choice ) return matches
def rescaleX ( self ) : '''Rescales the horizontal axes to make the lengthscales equal .'''
self . ratio = self . figure . get_size_inches ( ) [ 0 ] / float ( self . figure . get_size_inches ( ) [ 1 ] ) self . axes . set_xlim ( - self . ratio , self . ratio ) self . axes . set_ylim ( - 1 , 1 )
def stopObserver ( self ) : """Stops this region ' s observer loop . If this is running in a subprocess , the subprocess will end automatically ."""
self . _observer . isStopped = True self . _observer . isRunning = False
def get_vsan_enabled ( host , username , password , protocol = None , port = None , host_names = None ) : '''Get the VSAN enabled status for a given host or a list of host _ names . Returns ` ` True ` ` if VSAN is enabled , ` ` False ` ` if it is not enabled , and ` ` None ` ` if a VSAN Host Config is unset , p...
service_instance = salt . utils . vmware . get_service_instance ( host = host , username = username , password = password , protocol = protocol , port = port ) host_names = _check_hosts ( service_instance , host , host_names ) ret = { } for host_name in host_names : host_ref = _get_host_ref ( service_instance , hos...
def _get_result_paths ( self , data ) : """Build the dict of result filepaths"""
# get the filepath of the indexed database ( after comma ) # / path / to / refseqs . fasta , / path / to / refseqs . idx db_name = ( self . Parameters [ '--ref' ] . Value ) . split ( ',' ) [ 1 ] result = { } extensions = [ 'bursttrie' , 'kmer' , 'pos' , 'stats' ] for extension in extensions : for file_path in glob ...
async def _handle_local_charms ( self , bundle ) : """Search for references to local charms ( i . e . filesystem paths ) in the bundle . Upload the local charms to the model , and replace the filesystem paths with appropriate ' local : ' paths in the bundle . Return the modified bundle . : param dict bundle...
apps , args = [ ] , [ ] default_series = bundle . get ( 'series' ) apps_dict = bundle . get ( 'applications' , bundle . get ( 'services' , { } ) ) for app_name in self . applications : app_dict = apps_dict [ app_name ] charm_dir = os . path . abspath ( os . path . expanduser ( app_dict [ 'charm' ] ) ) if no...
def toDict ( self ) : """To Dict Returns the Hashed Node as a dictionary in the same format as is used in constructing it Returns : dict"""
# Init the dictionary we will return dRet = { } # Add the hash key dRet [ '__hash__' ] = self . _key . toDict ( ) # Get the parents dict and add it to the return dRet . update ( super ( HashNode , self ) . toDict ( ) ) # Get the nodes dict and also add it to the return dRet . update ( self . _node . toDict ( ) ) # Retu...
def create_jar_builder ( self , jar ) : """Creates a ` ` JarTask . JarBuilder ` ` ready for use . This method should be called during in ` execute ` context and only after ensuring ` JarTask . JarBuilder . prepare ` has already been called in ` prepare ` context . : param jar : An opened ` ` pants . backend ....
builder = self . JarBuilder ( self . context , jar ) yield builder builder . commit_manifest ( jar )
def has_documented_fields ( self , include_inherited_fields = False ) : """Returns whether at least one field is documented ."""
fields = self . all_fields if include_inherited_fields else self . fields for field in fields : if field . doc : return True return False
def value_from_person ( self , array , role , default = 0 ) : """Get the value of ` ` array ` ` for the person with the unique role ` ` role ` ` . ` ` array ` ` must have the dimension of the number of persons in the simulation If such a person does not exist , return ` ` default ` ` instead The result is a v...
self . entity . check_role_validity ( role ) if role . max != 1 : raise Exception ( 'You can only use value_from_person with a role that is unique in {}. Role {} is not unique.' . format ( self . key , role . key ) ) self . members . check_array_compatible_with_entity ( array ) members_map = self . ordered_members_...
def get_det_id ( self , det_oid ) : """Convert detector string representation ( OID ) to serialnumber"""
try : return self . detectors [ self . detectors . OID == det_oid ] . SERIALNUMBER . iloc [ 0 ] except IndexError : log . critical ( "No det ID found for OID '{}'" . format ( det_oid ) ) return None
def extrair_logs ( self ) : """Sobrepõe : meth : ` ~ satcfe . base . FuncoesSAT . extrair _ logs ` . : return : Uma resposta SAT especializada em ` ` ExtrairLogs ` ` . : rtype : satcfe . resposta . extrairlogs . RespostaExtrairLogs"""
retorno = super ( ClienteSATLocal , self ) . extrair_logs ( ) return RespostaExtrairLogs . analisar ( retorno )
def credential_update ( self , cred_id , ** options ) : """credential _ update cred _ id * * options Updates the specified values of the credential ID specified ."""
payload = None # First we pull the credentials and populate the payload if we # find a match . for cred in self . credentials ( ) [ 'credentials' ] : if cred [ 'id' ] == str ( cred_id ) : payload = { 'id' : cred_id , 'type' : cred [ 'type' ] , 'name' : cred [ 'name' ] , 'description' : cred [ 'description' ...
def log_every_n_seconds ( level , msg , n_seconds , * args ) : """Logs ' msg % args ' at level ' level ' iff ' n _ seconds ' elapsed since last call . Logs the first call , logs subsequent calls if ' n ' seconds have elapsed since the last logging call from the same call site ( file + line ) . Not thread - safe...
should_log = _seconds_have_elapsed ( get_absl_logger ( ) . findCaller ( ) , n_seconds ) log_if ( level , msg , should_log , * args )
def parse ( stream ) : """Creates a ` ` ValidationDefinition ` ` from a provided stream containing XML . The XML typically will look like this : ` ` < items > ` ` ` ` < server _ host > myHost < / server _ host > ` ` ` ` < server _ uri > https : / / 127.0.0.1:8089 < / server _ uri > ` ` ` ` < session _ key...
definition = ValidationDefinition ( ) # parse XML from the stream , then get the root node root = ET . parse ( stream ) . getroot ( ) for node in root : # lone item node if node . tag == "item" : # name from item node definition . metadata [ "name" ] = node . get ( "name" ) definition . parameters =...
def data ( self , index , role = Qt . DisplayRole ) : """Cell content"""
if not index . isValid ( ) : return to_qvariant ( ) value = self . get_value ( index ) if is_binary_string ( value ) : try : value = to_text_string ( value , 'utf8' ) except : pass if role == Qt . DisplayRole : if value is np . ma . masked : return '' else : try : ...
def build ( path , query = None , fragment = '' ) : """Generates a URL based on the inputted path and given query options and fragment . The query should be a dictionary of terms that will be generated into the URL , while the fragment is the anchor point within the target path that will be navigated to . If ...
url = nstr ( path ) # replace the optional arguments in the url keys = projex . text . findkeys ( path ) if keys : if query is None : query = { } opts = { } for key in keys : opts [ key ] = query . pop ( key , '%({})s' . format ( key ) ) url %= opts # add the query if query : if type...
def from_xyz ( x , y , z , alpha = 1.0 , wref = _DEFAULT_WREF ) : """Create a new instance based on the specifed CIE - XYZ values . Parameters : The Red component value [ 0 . . . 1] The Green component value [ 0 . . . 1] The Blue component value [ 0 . . . 1] : alpha : The color transparency [ 0 . . . 1 ...
return Color ( xyz_to_rgb ( x , y , z ) , 'rgb' , alpha , wref )
def p_identifier ( self , p ) : 'identifier : ID'
p [ 0 ] = Identifier ( p [ 1 ] , lineno = p . lineno ( 1 ) ) p . set_lineno ( 0 , p . lineno ( 1 ) )
def create_loadbalancer ( call = None , kwargs = None ) : '''Creates a loadbalancer within the datacenter from the provider config . CLI Example : . . code - block : : bash salt - cloud - f create _ loadbalancer profitbricks name = mylb'''
if call != 'function' : raise SaltCloudSystemExit ( 'The create_address function must be called with -f or --function.' ) if kwargs is None : kwargs = { } conn = get_conn ( ) datacenter_id = get_datacenter_id ( ) loadbalancer = LoadBalancer ( name = kwargs . get ( 'name' ) , ip = kwargs . get ( 'ip' ) , dhcp = ...
def get_anonymous_request ( leonardo_page ) : """returns inicialized request"""
request_factory = RequestFactory ( ) request = request_factory . get ( leonardo_page . get_absolute_url ( ) , data = { } ) request . feincms_page = request . leonardo_page = leonardo_page request . frontend_editing = False request . user = AnonymousUser ( ) if not hasattr ( request , '_feincms_extra_context' ) : re...
def AssertType ( value , expected_type ) : """Ensures that given value has certain type . Args : value : A value to assert the type for . expected _ type : An expected type for the given value . Raises : TypeError : If given value does not have the expected type ."""
if not isinstance ( value , expected_type ) : message = "Expected type `%r`, but got value `%r` of type `%s`" message %= ( expected_type , value , type ( value ) ) raise TypeError ( message )
def _get_chain_by_pid ( pid ) : """Find chain by pid . Return None if not found ."""
try : return d1_gmn . app . models . ChainMember . objects . get ( pid__did = pid ) . chain except d1_gmn . app . models . ChainMember . DoesNotExist : pass
def _choose_node ( self , nodes = None ) : """Chooses a random node from the list of nodes in the client , taking into account each node ' s recent error rate . : rtype RiakNode"""
if not nodes : nodes = self . nodes # Prefer nodes which have gone a reasonable time without # errors def _error_rate ( node ) : return node . error_rate . value ( ) good = [ n for n in nodes if _error_rate ( n ) < 0.1 ] if len ( good ) is 0 : # Fall back to a minimally broken node return min ( nodes , key ...
def dot ( self , vector , theta = None ) : """Return the dot product of two vectors . If theta is given then the dot product is computed as v1 * v1 = | v1 | | v2 | cos ( theta ) . Argument theta is measured in degrees ."""
if theta is not None : return ( self . magnitude ( ) * vector . magnitude ( ) * math . degrees ( math . cos ( theta ) ) ) return ( reduce ( lambda x , y : x + y , [ x * vector . vector [ i ] for i , x in self . to_list ( ) ( ) ] ) )
def set_runtime_value_float ( self , ihcid : int , value : float ) -> bool : """Set float runtime value with re - authenticate if needed"""
if self . client . set_runtime_value_float ( ihcid , value ) : return True self . re_authenticate ( ) return self . client . set_runtime_value_float ( ihcid , value )
def write_pkg_to_file ( self , name , objects , path = '.' , filename = None ) : """Write a list of related objs to file"""
# Kibana uses an array of docs , do the same # as opposed to a dict of docs pkg_objs = [ ] for _ , obj in iteritems ( objects ) : pkg_objs . append ( obj ) sorted_pkg = sorted ( pkg_objs , key = lambda k : k [ '_id' ] ) output = self . json_dumps ( sorted_pkg ) + '\n' if filename is None : filename = self . saf...
def enable ( commanddict , modulename ) : """< Purpose > Enables a module and imports its commands into the seash commanddict . < Arguments > modulename : The module to import . < Side Effects > All commands inside the specified module will be inserted into the seash commanddict if possible . The file...
# Is this an installed module ? if not modulename in module_data : raise seash_exceptions . UserError ( "Error, module '" + modulename + "' is not installed" ) if _is_module_enabled ( modulename ) : raise seash_exceptions . UserError ( "Module is already enabled." ) merge_commanddict ( commanddict , module_data...
def calculate_legacy_pad_amount ( H_in , pad_h , k_h , s_h ) : '''This function calculate padding amount along H - axis . It can be applied to other axes . It should be only used with pooling conversion . : param H _ in : input dimension along H - axis : param pad _ h : padding amount at H - axis : param k ...
# Calculate a common variable H_temp = H_in + 2 * pad_h - k_h # Pooling output shape under CoerML IncludeLastPixel padding mode H_include_last_pad_out = math . ceil ( H_temp / s_h ) + 1 # Pooling output shape under valid padding mode H_valid_pad_out = math . floor ( H_temp / s_h ) + 1 # Amount of values padded at top b...
def get_unicodedata ( version , output = HOME , no_zip = False ) : """Ensure we have Unicode data to generate Unicode tables ."""
target = os . path . join ( output , 'unicodedata' , version ) zip_target = os . path . join ( output , 'unicodedata' , '%s.zip' % version ) if not os . path . exists ( target ) and os . path . exists ( zip_target ) : unzip_unicode ( output , version ) # Download missing files if any . Zip if required . download_un...
def reducejson ( j ) : """Not sure if there ' s a better way to walk the . . . interesting result"""
authors = [ ] for key in j [ "data" ] [ "repository" ] [ "commitComments" ] [ "edges" ] : authors . append ( key [ "node" ] [ "author" ] ) for key in j [ "data" ] [ "repository" ] [ "issues" ] [ "nodes" ] : authors . append ( key [ "author" ] ) for c in key [ "comments" ] [ "nodes" ] : authors . app...
def writePlist ( dataObject , filepath ) : '''Write ' rootObject ' as a plist to filepath .'''
plistData , error = ( NSPropertyListSerialization . dataFromPropertyList_format_errorDescription_ ( dataObject , NSPropertyListXMLFormat_v1_0 , None ) ) if plistData is None : if error : error = error . encode ( 'ascii' , 'ignore' ) else : error = "Unknown error" raise NSPropertyListSerializ...
def _import_protobuf_from_file ( grpc_pyfile , method_name , service_name = None ) : """helper function which try to import method from the given _ pb2 _ grpc . py file service _ name should be provided only in case of name conflict return ( False , None ) in case of failure return ( True , ( stub _ class , r...
prefix = grpc_pyfile [ : - 12 ] pb2 = __import__ ( "%s_pb2" % prefix ) pb2_grpc = __import__ ( "%s_pb2_grpc" % prefix ) # we take all objects from pb2 _ grpc module which endswith " Stub " , and we remove this postfix to get service _ name all_service_names = [ stub_name [ : - 4 ] for stub_name in dir ( pb2_grpc ) if s...
def delete_project ( project_id ) : """Delete Project ."""
project = get_data_or_404 ( 'project' , project_id ) if project [ 'owner_id' ] != get_current_user_id ( ) : return jsonify ( message = 'forbidden' ) , 403 delete_instance ( 'project' , project_id ) return jsonify ( { } )
def getIfConfig ( self ) : """Return dictionary of Interface Configuration ( ifconfig ) . @ return : Dictionary of if configurations keyed by if name ."""
conf = { } try : out = subprocess . Popen ( [ ipCmd , "addr" , "show" ] , stdout = subprocess . PIPE ) . communicate ( ) [ 0 ] except : raise Exception ( 'Execution of command %s failed.' % ipCmd ) for line in out . splitlines ( ) : mobj = re . match ( '^\d+: (\S+):\s+<(\S*)>\s+(\S.*\S)\s*$' , line ) if...
def assert_credentials_match ( self , verifier , authc_token , account ) : """: type verifier : authc _ abcs . CredentialsVerifier : type authc _ token : authc _ abcs . AuthenticationToken : type account : account _ abcs . Account : returns : account _ abcs . Account : raises IncorrectCredentialsException :...
cred_type = authc_token . token_info [ 'cred_type' ] try : verifier . verify_credentials ( authc_token , account [ 'authc_info' ] ) except IncorrectCredentialsException : updated_account = self . update_failed_attempt ( authc_token , account ) failed_attempts = updated_account [ 'authc_info' ] [ cred_type ]...
def compiler ( self , target ) : """Returns the thrift compiler to use for the given target . : param target : The target to extract the thrift compiler from . : type target : : class : ` pants . backend . codegen . thrift . java . java _ thrift _ library . JavaThriftLibrary ` : returns : The thrift compiler ...
self . _check_target ( target ) return target . compiler or self . _default_compiler
def _get_next_events ( self , material ) : """Get next events from Genie ROOT file Looks over the generator"""
f = ROOT . TFile ( self . filenames [ material ] ) try : t = f . Get ( 'gst' ) n = t . GetEntries ( ) except : self . log . critical ( 'Could not open the ROOT file with Genie events' ) raise for i in range ( n ) : t . GetEntry ( i ) next_events = [ ] position = convert_3vector_to_dict ( [ s...
def graphs ( self ) : """Sorry for the black magic . The result is an object whose attributes are all the graphs found in graphs . py initialized with this instance as only argument ."""
result = Dummy ( ) for graph in graphs . __all__ : cls = getattr ( graphs , graph ) setattr ( result , cls . short_name , cls ( self ) ) return result
def from_api_repr ( cls , api_repr ) : """Return a ` ` SchemaField ` ` object deserialized from a dictionary . Args : api _ repr ( Mapping [ str , str ] ) : The serialized representation of the SchemaField , such as what is output by : meth : ` to _ api _ repr ` . Returns : google . cloud . biquery . sc...
# Handle optional properties with default values mode = api_repr . get ( "mode" , "NULLABLE" ) description = api_repr . get ( "description" ) fields = api_repr . get ( "fields" , ( ) ) return cls ( field_type = api_repr [ "type" ] . upper ( ) , fields = [ cls . from_api_repr ( f ) for f in fields ] , mode = mode . uppe...
def _srcRect_x ( self , attr_name ) : """Value of ` p : blipFill / a : srcRect / @ { attr _ name } ` or 0.0 if not present ."""
srcRect = self . blipFill . srcRect if srcRect is None : return 0.0 return getattr ( srcRect , attr_name )
def concat ( bed_files , catted = None ) : """recursively concat a set of BED files , returning a sorted bedtools object of the result"""
bed_files = [ x for x in bed_files if x ] if len ( bed_files ) == 0 : if catted : # move to a . bed extension for downstream tools if not already sorted_bed = catted . sort ( ) if not sorted_bed . fn . endswith ( ".bed" ) : return sorted_bed . moveto ( sorted_bed . fn + ".bed" ) ...
def register_to_random_name ( grad_f ) : """Register a gradient function to a random string . In order to use a custom gradient in TensorFlow , it must be registered to a string . This is both a hassle , and - - because only one function can every be registered to a string - - annoying to iterate on in an int...
grad_f_name = grad_f . __name__ + "_" + str ( uuid . uuid4 ( ) ) tf . RegisterGradient ( grad_f_name ) ( grad_f ) return grad_f_name
def get_temp_url_key ( self , cached = True ) : """Returns the current TempURL key , or None if it has not been set . By default the value returned is cached . To force an API call to get the current value on the server , pass ` cached = False ` ."""
meta = self . _cached_temp_url_key if not cached or not meta : key = "temp_url_key" meta = self . get_account_metadata ( ) . get ( key ) self . _cached_temp_url_key = meta return meta
def setdiff ( left , * rights , ** kwargs ) : """Exclude data from a collection , like ` except ` clause in SQL . All collections involved should have same schema . : param left : collection to drop data from : param rights : collection or list of collections : param distinct : whether to preserve duplicate...
import time from . . utils import output distinct = kwargs . get ( 'distinct' , False ) if isinstance ( rights [ 0 ] , list ) : rights = rights [ 0 ] cols = [ n for n in left . schema . names ] types = [ n for n in left . schema . types ] counter_col_name = 'exc_counter_%d' % int ( time . time ( ) ) left = left [ l...
def _make_pull_imethod_resp ( objs , eos , context_id ) : """Create the correct imethod response for the open and pull methods"""
eos_tup = ( u'EndOfSequence' , None , eos ) enum_ctxt_tup = ( u'EnumerationContext' , None , context_id ) return [ ( "IRETURNVALUE" , { } , objs ) , enum_ctxt_tup , eos_tup ]
def check ( text ) : """Flag offensive words based on the GLAAD reference guide ."""
err = "glaad.offensive_terms" msg = "Offensive term. Remove it or consider the context." list = [ "fag" , "faggot" , "dyke" , "sodomite" , "homosexual agenda" , "gay agenda" , "transvestite" , "homosexual lifestyle" , "gay lifestyle" # homo - may create false positives without additional context # FIXME use topic detet...
def serialize_args ( self ) : """Returns ( args , kwargs ) to be used when deserializing this parameter ."""
args , kwargs = super ( MultiParameter , self ) . serialize_args ( ) args . insert ( 0 , [ [ t . id , t . serialize_args ( ) ] for t in self . types ] ) return args , kwargs
def get_router_id ( self , tenant_id , tenant_name ) : """Retrieve the router ID ."""
router_id = None if tenant_id in self . tenant_dict : router_id = self . tenant_dict . get ( tenant_id ) . get ( 'router_id' ) if not router_id : router_list = self . os_helper . get_rtr_by_name ( 'FW_RTR_' + tenant_name ) if len ( router_list ) > 0 : router_id = router_list [ 0 ] . get ( 'id' ) ret...
def parse_solver_setting ( s ) : """Parse a string containing a solver setting"""
try : key , value = s . split ( '=' , 1 ) except ValueError : key , value = s , 'yes' if key in ( 'rational' , 'integer' , 'quadratic' ) : value = value . lower ( ) in ( '1' , 'yes' , 'true' , 'on' ) elif key in ( 'threads' , ) : value = int ( value ) elif key in ( 'feasibility_tolerance' , 'optimality_...
def atomic_output_file ( dest_path , make_parents = False , backup_suffix = None , suffix = ".partial.%s" ) : """A context manager for convenience in writing a file or directory in an atomic way . Set up a temporary name , then rename it after the operation is done , optionally making a backup of the previous f...
if dest_path == os . devnull : # Handle the ( probably rare ) case of writing to / dev / null . yield dest_path else : tmp_path = ( "%s" + suffix ) % ( dest_path , new_uid ( ) ) if make_parents : make_parent_dirs ( tmp_path ) yield tmp_path # Note this is not in a finally block , so that res...
def validate ( self , value ) : """Performs validation of the value . : param value : value to validate : raise ValidationError if the value is invalid"""
# check choices if self . choices : if isinstance ( self . choices [ 0 ] , ( list , tuple ) ) : option_keys = [ k for k , v in self . choices ] if value not in option_keys : msg = ( 'Value {0} is not listed among valid choices {1}' . format ( value , option_keys ) ) self . ra...
def gather_hinting ( config , rules , valid_paths ) : """Construct hint arguments for datanommer from a list of rules ."""
hinting = collections . defaultdict ( list ) for rule in rules : root , name = rule . code_path . split ( ':' , 1 ) info = valid_paths [ root ] [ name ] if info [ 'hints-callable' ] : # Call the callable hint to get its values result = info [ 'hints-callable' ] ( config = config , ** rule . argument...
def absolute_address ( self ) : """Get the absolute byte address of this node . Indexes of all arrays in the node ' s lineage must be known Raises ValueError If this property is referenced on a node whose array lineage is not fully defined"""
if self . parent and not isinstance ( self . parent , RootNode ) : return self . parent . absolute_address + self . address_offset else : return self . address_offset
def length_degrees ( self ) : '''Computes the length of the arc in degrees . The length computation corresponds to what you would expect if you would draw the arc using matplotlib taking direction into account . > > > Arc ( ( 0,0 ) , 1 , 0 , 0 , True ) . length _ degrees ( ) 0.0 > > > Arc ( ( 0,0 ) , 2 , 0 ...
d_angle = self . sign * ( self . to_angle - self . from_angle ) if ( d_angle > 360 ) : return 360.0 elif ( d_angle < 0 ) : return d_angle % 360.0 else : return abs ( d_angle )
def create_settings ( sender , ** kwargs ) : """create user notification settings on user creation"""
created = kwargs [ 'created' ] user = kwargs [ 'instance' ] if created : UserWebNotificationSettings . objects . create ( user = user ) UserEmailNotificationSettings . objects . create ( user = user )
def expect_types ( __funcname = _qualified_name , ** named ) : """Preprocessing decorator that verifies inputs have expected types . Examples > > > @ expect _ types ( x = int , y = str ) . . . def foo ( x , y ) : . . . return x , y > > > foo ( 2 , ' 3 ' ) (2 , ' 3 ' ) > > > foo ( 2.0 , ' 3 ' ) # docte...
for name , type_ in iteritems ( named ) : if not isinstance ( type_ , ( type , tuple ) ) : raise TypeError ( "expect_types() expected a type or tuple of types for " "argument '{name}', but got {type_} instead." . format ( name = name , type_ = type_ , ) ) def _expect_type ( type_ ) : # Slightly different me...
def _initialize_operation_name_to_id ( self ) : """Initializer for _ operation _ name _ to _ id . Returns : a { string : int } , mapping operation names to their index in _ operations ."""
operation_name_to_id = { } for i , operation in enumerate ( self . _operations ) : operation_name_to_id [ operation . name ] = i return operation_name_to_id
def do_start_cluster ( self , cluster ) : """Start the cluster Usage : > start _ cluster < cluster >"""
try : cluster = api . get_cluster ( cluster ) cluster . start ( ) print ( "Starting Cluster" ) except ApiException : print ( "Cluster not found" ) return None
def factorize ( number ) : """Get the prime factors of an integer except for 1. Parameters number : int Returns primes : iterable Examples > > > factorize ( - 17) [ - 1 , 17] > > > factorize ( 8) [2 , 2 , 2] > > > factorize ( 3 * * 25) [3 , 3 , 3 , 3 , 3 , 3 , 3 , 3 , 3 , 3 , 3 , 3 , 3 , 3 , 3...
if not isinstance ( number , int ) : raise ValueError ( 'integer expected, but type(number)={}' . format ( type ( number ) ) ) if number < 0 : return [ - 1 ] + factorize ( number * ( - 1 ) ) elif number == 0 : raise ValueError ( 'All primes are prime factors of 0.' ) else : for i in range ( 2 , int ( ma...
def view_user ( self , user ) : """View the given user on the user page : param user : the user to view : type user : : class : ` jukeboxcore . djadapter . models . User ` : returns : None : rtype : None : raises : None"""
log . debug ( 'Viewing user %s' , user . username ) self . cur_user = None self . pages_tabw . setCurrentIndex ( 9 ) self . user_username_le . setText ( user . username ) self . user_first_le . setText ( user . first_name ) self . user_last_le . setText ( user . last_name ) self . user_email_le . setText ( user . email...
def CreateAdGroup ( client , campaign_id ) : """Creates a dynamic remarketing campaign . Args : client : an AdWordsClient instance . campaign _ id : an int campaign ID . Returns : The ad group that was successfully created ."""
ad_group_service = client . GetService ( 'AdGroupService' , 'v201809' ) ad_group = { 'name' : 'Dynamic remarketing ad group' , 'campaignId' : campaign_id , 'status' : 'ENABLED' } operations = [ { 'operator' : 'ADD' , 'operand' : ad_group } ] return ad_group_service . mutate ( operations ) [ 'value' ] [ 0 ]
def add_device ( self , resource_name , device ) : """Bind device to resource name"""
if device . resource_name is not None : msg = 'The device %r is already assigned to %s' raise ValueError ( msg % ( device , device . resource_name ) ) device . resource_name = resource_name self . _internal [ device . resource_name ] = device
def finished_or_stopped ( self ) : """Condition check on finished or stopped status The method returns a value which is equivalent with not ' active ' status of the current state machine . : return : outcome of condition check stopped or finished : rtype : bool"""
return ( self . _status . execution_mode is StateMachineExecutionStatus . STOPPED ) or ( self . _status . execution_mode is StateMachineExecutionStatus . FINISHED )
def query_api ( app , client_id , imgur_id , is_album ) : """Query the Imgur API . : raise APIError : When Imgur responds with errors or unexpected data . : param sphinx . application . Sphinx app : Sphinx application object . : param str client _ id : Imgur API client ID to use . https : / / api . imgur . co...
url = API_URL . format ( type = 'album' if is_album else 'image' , id = imgur_id ) headers = { 'Authorization' : 'Client-ID {}' . format ( client_id ) } timeout = 5 # Query . app . info ( 'querying {}' . format ( url ) ) try : response = requests . get ( url , headers = headers , timeout = timeout ) except ( reques...
def _compute_magnitude ( self , rup , C ) : """Compute the first term of the equation described on p . 199: ` ` b1 + b2 * M + b3 * M * * 2 ` `"""
return C [ 'b1' ] + ( C [ 'b2' ] * rup . mag ) + ( C [ 'b3' ] * ( rup . mag ** 2 ) )
def state ( self ) : """Reading returns a list of state flags . Possible flags are ` running ` , ` ramping ` , ` holding ` , ` overloaded ` and ` stalled ` ."""
self . _state , value = self . get_attr_set ( self . _state , 'state' ) return value
def register_members ( self ) : """Collect the names of the class member and convert them to object members . Unlike Terms , the Group class members are converted into object members , so the configuration data"""
self . _members = { name : attr for name , attr in iteritems ( type ( self ) . __dict__ ) if isinstance ( attr , Group ) } for name , m in iteritems ( self . _members ) : m . init_descriptor ( name , self )
def disconnect ( self , close = True ) : """Closes the connection as well as logs off any of the Disconnects the TCP connection and shuts down the socket listener running in a thread . : param close : Will close all sessions in the connection as well as the tree connections of each session ."""
if close : for session in list ( self . session_table . values ( ) ) : session . disconnect ( True ) log . info ( "Disconnecting transport connection" ) self . transport . disconnect ( )
def read_attributes ( self , attributes = None ) : '''Collect read attributes across reads in this PileupCollection into a pandas . DataFrame . Valid attributes are the following properties of a pysam . AlignedSegment instance . See : http : / / pysam . readthedocs . org / en / latest / api . html # pysam ....
def include ( attribute ) : return attributes is None or attribute in attributes reads = self . reads ( ) possible_column_names = list ( PileupCollection . _READ_ATTRIBUTE_NAMES ) result = OrderedDict ( ( name , [ getattr ( read , name ) for read in reads ] ) for name in PileupCollection . _READ_ATTRIBUTE_NAMES if ...
def model_import ( self ) : """Import and instantiate the non - JIT models and the JIT models . Models defined in ` ` jits ` ` and ` ` non _ jits ` ` in ` ` models / _ _ init _ _ . py ` ` will be imported and instantiated accordingly . Returns None"""
# non - JIT models for file , pair in non_jits . items ( ) : for cls , name in pair . items ( ) : themodel = importlib . import_module ( 'andes.models.' + file ) theclass = getattr ( themodel , cls ) self . __dict__ [ name ] = theclass ( self , name ) group = self . __dict__ [ name ]...
def dateparser ( self , dformat = '%d/%m/%Y' ) : """Returns a date parser for pandas"""
def dateparse ( dates ) : return [ pd . datetime . strptime ( d , dformat ) for d in dates ] return dateparse
def dropcols ( df , start = None , end = None ) : """Drop columns that contain NaN within [ start , end ] inclusive . A wrapper around DataFrame . dropna ( ) that builds an easier * subset * syntax for tseries - indexed DataFrames . Parameters df : DataFrame start : str or datetime , default None start ...
if isinstance ( df , Series ) : raise ValueError ( "func only applies to `pd.DataFrame`" ) if start is None : start = df . index [ 0 ] if end is None : end = df . index [ - 1 ] subset = df . index [ ( df . index >= start ) & ( df . index <= end ) ] return df . dropna ( axis = 1 , subset = subset )
def adapter ( self , adapter ) : """Sets the adapter instance under the " _ adapter " property in use by this class . Also sets the adapter property for all implemented classes under this category . : param adapter : New adapter instance to set for this class and all implemented classes under this category . ...
self . _adapter = adapter for implemented_class in self . implemented_classes : class_name = implemented_class . __name__ . lower ( ) getattr ( self , self . get_private_attr_name ( class_name ) ) . adapter = adapter
def detect_encoding ( data , encoding = None , fallback = 'latin1' , is_html = False ) : '''Detect the character encoding of the data . Returns : str : The name of the codec Raises : ValueError : The codec could not be detected . This error can only occur if fallback is not a " lossless " codec .'''
if encoding : encoding = normalize_codec_name ( encoding ) bs4_detector = EncodingDetector ( data , override_encodings = ( encoding , ) if encoding else ( ) , is_html = is_html ) candidates = itertools . chain ( bs4_detector . encodings , ( fallback , ) ) for candidate in candidates : if not candidate : ...
def params ( self ) : """A combined : class : ` MultiDict ` with values from : attr : ` forms ` and : attr : ` GET ` . File - uploads are not included ."""
params = MultiDict ( self . GET ) for key , value in self . forms . iterallitems ( ) : params [ key ] = value return params