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def apply_T4 ( word ) : # OPTIMIZE '''An agglutination diphthong that ends in / u , y / usually contains a syllable boundary when - C # or - CCV follow , e . g . , [ lau . ka . us ] , [ va . ka . ut . taa ] .'''
WORD = _split_consonants_and_vowels ( word ) for k , v in WORD . iteritems ( ) : if len ( v ) == 2 and v . endswith ( ( 'u' , 'y' ) ) : if WORD . get ( k + 2 , 0 ) : if not WORD . get ( k + 3 , 0 ) : if len ( WORD [ k + 2 ] ) == 1 and is_consonant ( WORD [ k + 2 ] ) : ...
def copy ( self ) : """Return a new Project instance , deep - copying all the attributes ."""
p = Project ( ) p . name = self . name p . path = self . path p . _plugin = self . _plugin p . stage = self . stage . copy ( ) p . stage . project = p for sprite in self . sprites : s = sprite . copy ( ) s . project = p p . sprites . append ( s ) for actor in self . actors : if isinstance ( actor , Spri...
def get_result ( db , result_id ) : """: param db : a : class : ` openquake . server . dbapi . Db ` instance : param result _ id : a result ID : returns : ( job _ id , job _ status , datadir , datastore _ key )"""
job = db ( 'SELECT job.*, ds_key FROM job, output WHERE ' 'oq_job_id=job.id AND output.id=?x' , result_id , one = True ) return ( job . id , job . status , job . user_name , os . path . dirname ( job . ds_calc_dir ) , job . ds_key )
def order ( order_book_id , quantity , price = None , style = None ) : """全品种通用智能调仓函数 如果不指定 price , 则相当于下 MarketOrder 如果 order _ book _ id 是股票 , 等同于调用 order _ shares 如果 order _ book _ id 是期货 , 则进行智能下单 : * quantity 表示调仓量 * 如果 quantity 为正数 , 则先平 Sell 方向仓位 , 再开 Buy 方向仓位 * 如果 quantity 为负数 , 则先平 Buy 反向仓位 , 再...
style = cal_style ( price , style ) orders = Environment . get_instance ( ) . portfolio . order ( order_book_id , quantity , style ) if isinstance ( orders , Order ) : return [ orders ] return orders
def help ( file = None ) : """Print out syntax help for running astrodrizzle Parameters file : str ( Default = None ) If given , write out help to the filename specified by this parameter Any previously existing file with this name will be deleted before writing out the help ."""
helpstr = getHelpAsString ( docstring = True , show_ver = True ) if file is None : print ( helpstr ) else : if os . path . exists ( file ) : os . remove ( file ) f = open ( file , mode = 'w' ) f . write ( helpstr ) f . close ( )
def del_view_menu ( self , name ) : """Deletes a ViewMenu from the backend : param name : name of the ViewMenu"""
obj = self . find_view_menu ( name ) if obj : try : obj . delete ( ) except Exception as e : log . error ( c . LOGMSG_ERR_SEC_DEL_PERMISSION . format ( str ( e ) ) )
def match_replace ( cls , ops , kwargs ) : """Match and replace a full operand specification to a function that provides a replacement for the whole expression or raises a : exc : ` . CannotSimplify ` exception . E . g . First define an operation : : > > > class Invert ( Operation ) : . . . _ rules = Or...
expr = ProtoExpr ( ops , kwargs ) if LOG : logger = logging . getLogger ( 'QNET.create' ) for key , rule in cls . _rules . items ( ) : pat , replacement = rule match_dict = match_pattern ( pat , expr ) if match_dict : try : replaced = replacement ( ** match_dict ) if LOG ...
def parse_factor_line ( line ) : """function to parse a factor file line . Used by fac2real ( ) Parameters line : ( str ) a factor line from a factor file Returns inode : int the inode of the grid node itrans : int flag for transformation of the grid node fac _ data : dict a dictionary of point ...
raw = line . strip ( ) . split ( ) inode , itrans , nfac = [ int ( i ) for i in raw [ : 3 ] ] fac_data = { int ( raw [ ifac ] ) - 1 : float ( raw [ ifac + 1 ] ) for ifac in range ( 4 , 4 + nfac * 2 , 2 ) } # fac _ data = { } # for ifac in range ( 4,4 + nfac * 2,2 ) : # pnum = int ( raw [ ifac ] ) - 1 # zero based to sy...
def getStateCode ( self , state ) : """Calculates the state code for a specific state or set of states . We transform the states so that they are nonnegative and take an inner product . The resulting number is unique because we use numeral system with a large enough base ."""
return np . dot ( state - self . minvalues , self . statecode )
def data ( self ) : """Values in request body ."""
if self . _data is None : self . _data = self . arg_container ( ) if isinstance ( self . fieldstorage . value , list ) : for k in self . fieldstorage . keys ( ) : fname = self . fieldstorage [ k ] . filename if fname : self . _data [ k ] = ( fname , self . fieldst...
def msg_curse ( self , args = None , max_width = None ) : """Return the dict to display in the curse interface ."""
# Init the return message ret = [ ] # Only process if stats exist and plugin not disabled if not self . stats or self . is_disable ( ) : return ret # Build the string message # Header msg = '{}' . format ( 'SWAP' ) ret . append ( self . curse_add_line ( msg , "TITLE" ) ) msg = ' {:3}' . format ( self . trend_msg ( ...
def _read_data_handler ( length , whence , ctx , skip = False , stream_event = ION_STREAM_INCOMPLETE_EVENT ) : """Creates a co - routine for retrieving data up to a requested size . Args : length ( int ) : The minimum length requested . whence ( Coroutine ) : The co - routine to return to after the data is sa...
trans = None queue = ctx . queue if length > ctx . remaining : raise IonException ( 'Length overrun: %d bytes, %d remaining' % ( length , ctx . remaining ) ) # Make sure to check the queue first . queue_len = len ( queue ) if queue_len > 0 : # Any data available means we can only be incomplete . stream_event = ...
def eval ( source , optimize = True , output = sys . stdout , input = sys . stdin , steps = - 1 ) : """Compiles and runs program , returning the values on the stack . To return the machine instead , see execute ( ) . Args : optimize : Whether to optimize the code after parsing it . output : Stream which pro...
machine = execute ( source , optimize = optimize , output = output , input = input , steps = steps ) ds = machine . stack if len ( ds ) == 0 : return None elif len ( ds ) == 1 : return ds [ - 1 ] else : return ds
def from_json ( cls , data ) : """Create a location from a dictionary . Args : data : { " city " : " - " , " latitude " : 0, " longitude " : 0, " time _ zone " : 0, " elevation " : 0}"""
optional_keys = ( 'city' , 'state' , 'country' , 'latitude' , 'longitude' , 'time_zone' , 'elevation' , 'station_id' , 'source' ) for key in optional_keys : if key not in data : data [ key ] = None return cls ( data [ 'city' ] , data [ 'state' ] , data [ 'country' ] , data [ 'latitude' ] , data [ 'longitude...
def set_stats_params ( self , address = None , enable_http = None , minify = None , no_cores = None , no_metrics = None , push_interval = None ) : """Enables stats server on the specified address . * http : / / uwsgi . readthedocs . io / en / latest / StatsServer . html : param str | unicode address : Address /...
self . _set ( 'stats-server' , address ) self . _set ( 'stats-http' , enable_http , cast = bool ) self . _set ( 'stats-minified' , minify , cast = bool ) self . _set ( 'stats-no-cores' , no_cores , cast = bool ) self . _set ( 'stats-no-metrics' , no_metrics , cast = bool ) self . _set ( 'stats-pusher-default-freq' , pu...
def load ( self , * modules ) : """Load one or more modules . Args : modules : Either a string full path to a module or an actual module object ."""
for module in modules : if isinstance ( module , six . string_types ) : try : module = get_object ( module ) except Exception as e : self . errors [ module ] = e continue self . modules [ module . __package__ ] = module for ( loader , module_name , is_pkg ...
def extend ( self , itemseq ) : """Add sequence of elements to end of ParseResults list of elements . Example : : patt = OneOrMore ( Word ( alphas ) ) # use a parse action to append the reverse of the matched strings , to make a palindrome def make _ palindrome ( tokens ) : tokens . extend ( reversed ( [ ...
if isinstance ( itemseq , ParseResults ) : self += itemseq else : self . __toklist . extend ( itemseq )
def diskwarp ( src_ds , res = None , extent = None , t_srs = None , r = 'cubic' , outdir = None , dst_fn = None , dst_ndv = None , verbose = True ) : """Helper function that calls warp for single input Dataset with output to disk ( GDAL GeoTiff Driver )"""
if dst_fn is None : dst_fn = os . path . splitext ( src_ds . GetFileList ( ) [ 0 ] ) [ 0 ] + '_warp.tif' if outdir is not None : dst_fn = os . path . join ( outdir , os . path . basename ( dst_fn ) ) driver = iolib . gtif_drv dst_ds = warp ( src_ds , res , extent , t_srs , r , driver , dst_fn , dst_ndv = dst_nd...
def stop ( self ) : """Stops the external measurement program and returns the measurement result , if the measurement was running ."""
consumed_energy = collections . defaultdict ( dict ) if not self . is_running ( ) : return None # cpu - energy - meter expects SIGINT to stop and report its result self . _measurement_process . send_signal ( signal . SIGINT ) ( out , err ) = self . _measurement_process . communicate ( ) assert self . _measurement_p...
def _sane_version_list ( version ) : """Ensure the major and minor are int . Parameters version : list Version components Returns version : list List of components where first two components has been sanitised"""
v0 = str ( version [ 0 ] ) if v0 : # Test if the major is a number . try : v0 = v0 . lstrip ( "v" ) . lstrip ( "V" ) # Handle the common case where tags have v before major . v0 = int ( v0 ) except ValueError : v0 = None if v0 is None : version = [ 0 , 0 ] + version else : ...
def match_filtered_identities ( self , fa , fb ) : """Determine if two filtered identities are the same . The method compares the email addresses of each filtered identity to check if they are the same . When the given filtered identities are the same object or share the same UUID , this will also produce a...
if not isinstance ( fa , EmailIdentity ) : raise ValueError ( "<fa> is not an instance of UniqueIdentity" ) if not isinstance ( fb , EmailIdentity ) : raise ValueError ( "<fb> is not an instance of EmailNameIdentity" ) if fa . uuid and fb . uuid and fa . uuid == fb . uuid : return True if fa . email in self...
def plot_survival ( self , on , how = "os" , survival_units = "Days" , strata = None , ax = None , ci_show = False , with_condition_color = "#B38600" , no_condition_color = "#A941AC" , with_condition_label = None , no_condition_label = None , color_map = None , label_map = None , color_palette = "Set2" , threshold = No...
assert how in [ "os" , "pfs" ] , "Invalid choice of survival plot type %s" % how cols , df = self . as_dataframe ( on , return_cols = True , ** kwargs ) plot_col = self . plot_col_from_cols ( cols = cols , only_allow_one = True ) df = filter_not_null ( df , plot_col ) results = plot_kmf ( df = df , condition_col = plot...
def parse_udiff ( diff , patterns = None , parent = '.' ) : """Return a dictionary of matching lines ."""
# For each file of the diff , the entry key is the filename , # and the value is a set of row numbers to consider . rv = { } path = nrows = None for line in diff . splitlines ( ) : if nrows : if line [ : 1 ] != '-' : nrows -= 1 continue if line [ : 3 ] == '@@ ' : hunk_match =...
def setCurrentInspectorRegItem ( self , regItem ) : """Sets the current inspector given an InspectorRegItem"""
check_class ( regItem , InspectorRegItem , allow_none = True ) self . inspectorTab . setCurrentRegItem ( regItem )
def validate ( self , path , schema , value , results ) : """Validates a given value against this rule . : param path : a dot notation path to the value . : param schema : a schema this rule is called from : param value : a value to be validated . : param results : a list with validation results to add new ...
name = path if path != None else "value" found = [ ] for prop in self . _properties : property_value = ObjectReader . get_property ( value , prop ) if property_value != None : found . append ( prop ) if len ( found ) == 0 : results . append ( ValidationResult ( path , ValidationResultType . Error , ...
def pad_funcs ( self , high ) : '''Turns dot delimited function refs into function strings'''
for name in high : if not isinstance ( high [ name ] , dict ) : if isinstance ( high [ name ] , six . string_types ) : # Is this is a short state ? It needs to be padded ! if '.' in high [ name ] : comps = high [ name ] . split ( '.' ) if len ( comps ) >= 2 : # Me...
def _partition_query ( cls , table_name , limit = 0 , order_by = None , filters = None ) : """Returns a partition query : param table _ name : the name of the table to get partitions from : type table _ name : str : param limit : the number of partitions to be returned : type limit : int : param order _ b...
limit_clause = 'LIMIT {}' . format ( limit ) if limit else '' order_by_clause = '' if order_by : l = [ ] # noqa : E741 for field , desc in order_by : l . append ( field + ' DESC' if desc else '' ) order_by_clause = 'ORDER BY ' + ', ' . join ( l ) where_clause = '' if filters : l = [ ] # ...
def _shape_repr ( shape ) : """Return a platform independent reprensentation of an array shape Under Python 2 , the ` long ` type introduces an ' L ' suffix when using the default % r format for tuples of integers ( typically used to store the shape of an array ) . Under Windows 64 bit ( and Python 2 ) , th...
if len ( shape ) == 0 : return "()" joined = ", " . join ( "%d" % e for e in shape ) if len ( shape ) == 1 : # special notation for singleton tuples joined += ',' return "(%s)" % joined
def get_asset_admin_session ( self , * args , ** kwargs ) : """Gets an asset administration session for creating , updating and deleting assets . return : ( osid . repository . AssetAdminSession ) - an AssetAdminSession raise : OperationFailed - unable to complete request raise : Unimplemented - supports ...
if not self . supports_asset_admin ( ) : raise Unimplemented ( ) try : from . import sessions except ImportError : raise # OperationFailed ( ) try : session = sessions . AssetAdminSession ( proxy = self . _proxy , runtime = self . _runtime , ** kwargs ) except AttributeError : raise # Operat...
def calc_hexversion ( major = 0 , minor = 0 , micro = 0 , releaselevel = 'dev' , serial = 0 ) : """Calculate the hexadecimal version number from the tuple version _ info : : param major : integer : param minor : integer : param micro : integer : param relev : integer or string : param serial : integer :...
try : releaselevel = int ( releaselevel ) except ValueError : releaselevel = RELEASE_LEVEL_VALUE . get ( releaselevel , 0 ) hex_version = int ( serial ) hex_version |= releaselevel * 1 << 4 hex_version |= int ( micro ) * 1 << 8 hex_version |= int ( minor ) * 1 << 16 hex_version |= int ( major ) * 1 << 24 return...
def uninstall ( self , tool : Tool , force : bool = False , noprune : bool = False ) -> None : """Uninstalls all Docker images associated with this tool . See : ` BuildManager . uninstall `"""
self . __installation . build . uninstall ( tool . image , force = force , noprune = noprune )
def dotter ( ) : """Prints formatted time to stdout at the start of a line , as well as a " . " whenever the length of the line is equal or lesser than 80 " . " long"""
# Use a global variable global globalcount if globalcount <= 80 : sys . stdout . write ( '.' ) globalcount += 1 else : sys . stdout . write ( '\n.' ) globalcount = 1
def command_getkeys ( self , command , * args , encoding = 'utf-8' ) : """Extract keys given a full Redis command ."""
return self . execute ( b'COMMAND' , b'GETKEYS' , command , * args , encoding = encoding )
def get_containers ( self ) : """Return available containers ."""
permitted = lambda c : settings . container_permitted ( c . name ) return [ c for c in self . _get_containers ( ) if permitted ( c ) ]
def put_zonefiles ( hostport , zonefile_data_list , timeout = 30 , my_hostport = None , proxy = None ) : """Push one or more zonefiles to the given server . Each zone file in the list must be base64 - encoded Return { ' status ' : True , ' saved ' : [ . . . ] } on success Return { ' error ' : . . . } on error...
assert hostport or proxy , 'need either hostport or proxy' saved_schema = { 'type' : 'object' , 'properties' : { 'saved' : { 'type' : 'array' , 'items' : { 'type' : 'integer' , 'minimum' : 0 , 'maximum' : 1 , } , 'minItems' : len ( zonefile_data_list ) , 'maxItems' : len ( zonefile_data_list ) } , } , 'required' : [ 's...
def ordered ( seq , keys = None , default = True , warn = False ) : """Return an iterator of the seq where keys are used to break ties in a conservative fashion : if , after applying a key , there are no ties then no other keys will be computed . Two default keys will be applied if 1 ) keys are not provided o...
d = defaultdict ( list ) if keys : if not isinstance ( keys , ( list , tuple ) ) : keys = [ keys ] keys = list ( keys ) f = keys . pop ( 0 ) for a in seq : d [ f ( a ) ] . append ( a ) else : if not default : raise ValueError ( 'if default=False then keys must be provided' ) ...
def removeChild ( self , position ) : """Removes the child at the position ' position ' Calls the child item finalize to close its resources before removing it ."""
assert 0 <= position <= len ( self . childItems ) , "position should be 0 < {} <= {}" . format ( position , len ( self . childItems ) ) self . childItems [ position ] . finalize ( ) self . childItems . pop ( position )
def normal_prior ( value , mean , sigma ) : """Normal prior distribution ."""
return - 0.5 * ( 2 * np . pi * sigma ) - ( value - mean ) ** 2 / ( 2.0 * sigma )
def reset_time ( self , time , true_anom , elongan , eincl ) : """TODO : add documentation"""
self . true_anom = true_anom self . elongan = elongan self . eincl = eincl self . time = time self . populated_at_time = [ ] self . reset ( ) return
def load ( value : Any , type_ : Type [ T ] , ** kwargs ) -> T : """Quick function call to load data into a type . It is useful to avoid creating the Loader object , in case only the default parameters are used ."""
from . import dataloader loader = dataloader . Loader ( ** kwargs ) return loader . load ( value , type_ )
def list_returner_functions ( * args , ** kwargs ) : # pylint : disable = unused - argument '''List the functions for all returner modules . Optionally , specify a returner module or modules from which to list . . . versionadded : : 2014.7.0 CLI Example : . . code - block : : bash salt ' * ' sys . list _ ...
# NOTE : * * kwargs is used here to prevent a traceback when garbage # arguments are tacked on to the end . returners_ = salt . loader . returners ( __opts__ , [ ] ) if not args : # We ' re being asked for all functions return sorted ( returners_ ) names = set ( ) for module in args : if '*' in module or '.' in...
def _data_dep_init ( self , inputs ) : """Data dependent initialization for eager execution ."""
with tf . variable_scope ( "data_dep_init" ) : # Generate data dependent init values activation = self . layer . activation self . layer . activation = None x_init = self . layer . call ( inputs ) m_init , v_init = tf . moments ( x_init , self . norm_axes ) scale_init = 1. / tf . sqrt ( v_init + 1e-...
def locus ( args ) : """% prog locus bamfile Extract selected locus from a list of TREDs for validation , and run lobSTR ."""
from jcvi . formats . sam import get_minibam # See ` Format - lobSTR - database . ipynb ` for a list of TREDs for validation INCLUDE = [ "HD" , "SBMA" , "SCA1" , "SCA2" , "SCA8" , "SCA17" , "DM1" , "DM2" , "FXTAS" ] db_choices = ( "hg38" , "hg19" ) p = OptionParser ( locus . __doc__ ) p . add_option ( "--tred" , choice...
def resizeEvent ( self , event ) : """Overloads the resize event to auto - resize the rich text label to the size of this QPushButton . : param event | < QResizeEvent >"""
super ( XPushButton , self ) . resizeEvent ( event ) if self . _richTextLabel : self . _richTextLabel . resize ( event . size ( ) )
def _get_dbid2goids ( associations ) : """Return gene2go data for user - specified taxids ."""
id2gos = cx . defaultdict ( set ) for ntd in associations : id2gos [ ntd . DB_ID ] . add ( ntd . GO_ID ) return dict ( id2gos )
def results ( self , times = 'all' , t_precision = 12 , ** kwargs ) : r"""Fetches the calculated quantity from the algorithm and returns it as an array . Parameters times : scalar or list Time steps to be returned . The default value is ' all ' which results in returning all time steps . If a scalar is gi...
if 'steps' in kwargs . keys ( ) : times = kwargs [ 'steps' ] t_pre = t_precision quantity = self . settings [ 'quantity' ] q = [ k for k in list ( self . keys ( ) ) if quantity in k ] if times == 'all' : t = q elif type ( times ) in [ float , int ] : n = int ( - dc ( str ( round ( times , t_pre ) ) ) . as_t...
def BIC ( self , data = None ) : '''BIC on the passed data . If passed data is None ( default ) , calculates BIC on the model ' s assigned data'''
# NOTE : in principle this method computes the BIC only after finding the # maximum likelihood parameters ( or , of course , an EM fixed - point as an # approximation ! ) assert data is None and len ( self . states_list ) > 0 , 'Must have data to get BIC' if data is None : return - 2 * sum ( self . log_likelihood (...
def processResponse ( self , arg , replytype , ** kw ) : """Parameters : arg - - deferred replytype - - typecode"""
if self . debug : log . msg ( '--->PROCESS REQUEST\n%s' % arg , debug = 1 ) for h in self . handlers : arg . addCallback ( h . processResponse , ** kw ) arg . addCallback ( self . parseResponse , replytype )
def p_substr_assignment ( p ) : """statement : LET ID arg _ list EQ expr"""
if p [ 3 ] is None or p [ 5 ] is None : return # There were errors p [ 0 ] = None entry = SYMBOL_TABLE . access_call ( p [ 2 ] , p . lineno ( 2 ) ) if entry is None : return if entry . class_ == CLASS . unknown : entry . class_ = CLASS . var assert entry . class_ == CLASS . var and entry . type_ == TYPE . s...
def absent ( name , service_name , auth = None , ** kwargs ) : '''Ensure an endpoint does not exists name Interface name url URL of the endpoint service _ name Service name or ID region The region name to assign the endpoint'''
ret = { 'name' : name , 'changes' : { } , 'result' : True , 'comment' : '' } __salt__ [ 'keystoneng.setup_clouds' ] ( auth ) success , val = _ , endpoint = _common ( ret , name , service_name , kwargs ) if not success : return val if endpoint : if __opts__ [ 'test' ] is True : ret [ 'result' ] = None ...
def cov ( x , y , keepdims = 0 ) : """Returns the estimated covariance of the values in the passed array ( i . e . , N - 1 ) . Dimension can equal None ( ravel array first ) , an integer ( the dimension over which to operate ) , or a sequence ( operate over multiple dimensions ) . Set keepdims = 1 to return a...
n = len ( x ) xmn = mean ( x ) ymn = mean ( y ) xdeviations = [ 0 ] * len ( x ) ydeviations = [ 0 ] * len ( y ) for i in range ( len ( x ) ) : xdeviations [ i ] = x [ i ] - xmn ydeviations [ i ] = y [ i ] - ymn ss = 0.0 for i in range ( len ( xdeviations ) ) : ss = ss + xdeviations [ i ] * ydeviations [ i ]...
def remove ( self , element , multiplicity = None ) : """Removes an element from the multiset . If no multiplicity is specified , the element is completely removed from the multiset : > > > ms = Multiset ( ' aabbbc ' ) > > > ms . remove ( ' a ' ) > > > sorted ( ms ) [ ' b ' , ' b ' , ' b ' , ' c ' ] If ...
_elements = self . _elements if element not in _elements : raise KeyError old_multiplicity = _elements . get ( element , 0 ) if multiplicity is None or multiplicity >= old_multiplicity : del _elements [ element ] self . _total -= old_multiplicity elif multiplicity < 0 : raise ValueError ( "Multiplicity ...
def get_database_users ( self ) : """Get list of database users ."""
url = "db/{0}/users" . format ( self . _database ) response = self . request ( url = url , method = 'GET' , expected_response_code = 200 ) return response . json ( )
def reset ( all = False , vms = False , switches = False ) : '''Reset the running state of VMM or a subsystem . all : Reset the running state . switches : Reset the configured switches . vms : Reset and terminate all VMs . CLI Example : . . code - block : : bash salt ' * ' vmctl . reset all = True...
ret = False cmd = [ 'vmctl' , 'reset' ] if all : cmd . append ( 'all' ) elif vms : cmd . append ( 'vms' ) elif switches : cmd . append ( 'switches' ) result = __salt__ [ 'cmd.run_all' ] ( cmd , output_loglevel = 'trace' , python_shell = False ) if result [ 'retcode' ] == 0 : ret = True else : raise ...
def confirmMapIdentity ( self , subject , vendorSpecific = None ) : """See Also : confirmMapIdentityResponse ( ) Args : subject : vendorSpecific : Returns :"""
response = self . confirmMapIdentityResponse ( subject , vendorSpecific ) return self . _read_boolean_response ( response )
def _equation_of_time ( t ) : """Find the difference between apparent and mean solar time Parameters t : ` ~ astropy . time . Time ` times ( array ) Returns ret1 : ` ~ astropy . units . Quantity ` the equation of time"""
# Julian centuries since J2000.0 T = ( t - Time ( "J2000" ) ) . to ( u . year ) . value / 100 # obliquity of ecliptic ( Meeus 1998 , eq 22.2) poly_pars = ( 84381.448 , 46.8150 , 0.00059 , 0.001813 ) eps = u . Quantity ( polyval ( T , poly_pars ) , u . arcsec ) y = np . tan ( eps / 2 ) ** 2 # Sun ' s mean longitude ( Me...
def get_current_context_id ( ) : """Identifis which context it is ( greenlet , stackless , or thread ) . : returns : the identifier of the current context ."""
global get_current_context_id if greenlet is not None : if stackless is None : get_current_context_id = greenlet . getcurrent return greenlet . getcurrent ( ) return greenlet . getcurrent ( ) , stackless . getcurrent ( ) elif stackless is not None : get_current_context_id = stackless . getcu...
def get_email_content ( file_path ) : """Email content in file : param file _ path : Path to file with email text : return : Email text ( html formatted )"""
with open ( file_path , "r" ) as in_file : text = str ( in_file . read ( ) ) return text . replace ( "\n\n" , "<br>" )
def search_records ( self , domain , record_type , name = None , data = None ) : """Returns a list of all records configured for the specified domain that match the supplied search criteria ."""
search_params = [ ] if name : search_params . append ( "name=%s" % name ) if data : search_params . append ( "data=%s" % data ) query_string = "&" . join ( search_params ) dom_id = utils . get_id ( domain ) uri = "/domains/%s/records?type=%s" % ( dom_id , record_type ) if query_string : uri = "%s&%s" % ( ur...
def get_job_list ( self , project_name ) : """Get the list of pending , running and finished jobs of some project . : param project _ name : the project name : return : a dictionary that list inculde job name and status example : { " status " : " ok " , " pending " : [ { " id " : " 78391cc0fcaf11e1b009080...
url , method = self . command_set [ 'listjobs' ] [ 0 ] , self . command_set [ 'listjobs' ] [ 1 ] data = { 'project' : project_name } response = http_utils . request ( url , method_type = method , data = data , return_type = http_utils . RETURN_JSON ) if response is None : logging . warning ( '%s failure: not found ...
def plots_from_files ( imspaths , figsize = ( 10 , 5 ) , rows = 1 , titles = None , maintitle = None ) : """Plots images given image files . Arguments : im _ paths ( list ) : list of paths figsize ( tuple ) : figure size rows ( int ) : number of rows titles ( list ) : list of titles maintitle ( string )...
f = plt . figure ( figsize = figsize ) if maintitle is not None : plt . suptitle ( maintitle , fontsize = 16 ) for i in range ( len ( imspaths ) ) : sp = f . add_subplot ( rows , ceildiv ( len ( imspaths ) , rows ) , i + 1 ) sp . axis ( 'Off' ) if titles is not None : sp . set_title ( titles [ i...
def setRect ( self , rect ) : """Sets the rect for this node , ensuring that the width and height meet the minimum requirements . : param rect < QRectF >"""
mwidth = self . minimumWidth ( ) mheight = self . minimumHeight ( ) if ( rect . width ( ) < mwidth ) : rect . setWidth ( mwidth ) if ( rect . height ( ) < mheight ) : rect . setHeight ( mheight ) return super ( XNode , self ) . setRect ( rect )
def checkgrad ( f , fprime , x , * args , ** kw_args ) : """Analytical gradient calculation using a 3 - point method"""
LG . debug ( "Checking gradient ..." ) import numpy as np # using machine precision to choose h eps = np . finfo ( float ) . eps step = np . sqrt ( eps ) * ( x . min ( ) ) # shake things up a bit by taking random steps for each x dimension h = step * np . sign ( np . random . uniform ( - 1 , 1 , x . size ) ) f_ph = f (...
def update ( self ) : '''Draws directly to the terminal any UI elements in the tree that are marked as having been updated . UI elements may have marked themselves as updated if , for example , notable attributes have been altered , or the : attr : ` updated ` element may be set to ` ` True ` ` explicitly by ...
super ( ) . update ( self . default_format , terminal = self . terminal , styles = self . style )
def filter_stack ( graph , head , filters ) : """Perform a walk in a depth - first order starting at * head * . Returns ( visited , removes , orphans ) . * visited : the set of visited nodes * removes : the list of nodes where the node data does not all * filters * * orphans : tuples of ( last _ good , ...
visited , removes , orphans = set ( [ head ] ) , set ( ) , set ( ) stack = deque ( [ ( head , head ) ] ) get_data = graph . node_data get_edges = graph . out_edges get_tail = graph . tail while stack : last_good , node = stack . pop ( ) data = get_data ( node ) if data is not None : for filtfunc in ...
def _sort_to_str ( self ) : """Before exec query , this method transforms sort dict string from { " name " : " asc " , " timestamp " : " desc " } to " name asc , timestamp desc " """
params_list = [ ] timestamp = "" for k , v in self . _solr_params [ 'sort' ] . items ( ) : if k != "timestamp" : params_list . append ( " " . join ( [ k , v ] ) ) else : timestamp = v params_list . append ( " " . join ( [ 'timestamp' , timestamp ] ) ) self . _solr_params [ 'sort' ] = ", " . join...
def _actor_from_game_image ( self , name , game_image ) : """Return an actor object matching the one in the game image . Note : Health and mana are based on measured percentage of a fixed maximum rather than the actual maximum in the game . Arguments : name : must be ' player ' or ' opponent ' game _ im...
HEALTH_MAX = 100 MANA_MAX = 40 # get the set of tools for investigating this actor tools = { 'player' : self . _player_tools , 'opponent' : self . _oppnt_tools } [ name ] # setup the arguments to be set : args = [ name ] # health : t , l , b , r = tools [ 'health_region' ] . region_in ( game_image ) health_image = game...
def scan_sequence ( self , frame , direction ) : """Search in one reading frame"""
orf_start = None for c , index in self . codons ( frame ) : if ( c not in self . stop and ( c in self . start or not self . start ) and orf_start is None ) : orf_start = index elif c in self . stop and orf_start is not None : self . _update_longest ( orf_start , index + 3 , direction , frame ) ...
def _package_conf_ordering ( conf , clean = True , keep_backup = False ) : '''Move entries in the correct file .'''
if conf in SUPPORTED_CONFS : rearrange = [ ] path = BASE_PATH . format ( conf ) backup_files = [ ] for triplet in salt . utils . path . os_walk ( path ) : for file_name in triplet [ 2 ] : file_path = '{0}/{1}' . format ( triplet [ 0 ] , file_name ) cp = triplet [ 0 ] [ le...
def skip_status ( * skipped ) : """Decorator to skip this call if we ' re in one of the skipped states ."""
def decorator ( func ) : @ functools . wraps ( func ) def _skip_status ( self , * args , ** kwargs ) : if self . status not in skipped : return func ( self , * args , ** kwargs ) return _skip_status return decorator
def topics ( self ) : """: return : the list of topics we interfaced with ( not the list of all available topics )"""
topics = self . interface . publishers . copy ( ) topics . update ( self . interface . subscribers ) return topics
def raise_ssl_error ( code , nested = None ) : """Raise an SSL error with the given error code"""
err_string = str ( code ) + ": " + _ssl_errors [ code ] if nested : raise SSLError ( code , err_string + str ( nested ) ) raise SSLError ( code , err_string )
def calculate_fuzzy_chi ( alpha , square_map , right_eigenvectors ) : """Calculate the membership matrix ( chi ) from parameters alpha . Parameters alpha : ndarray Parameters of objective function ( e . g . flattened A ) square _ map : ndarray Mapping from square indices ( i , j ) to flat indices ( k ) . ...
# Convert parameter vector into matrix A A = to_square ( alpha , square_map ) # Make A feasible . A = fill_A ( A , right_eigenvectors ) # Calculate the fuzzy membership matrix . chi_fuzzy = np . dot ( right_eigenvectors , A ) # Calculate the microstate mapping . mapping = np . argmax ( chi_fuzzy , 1 ) return A , chi_fu...
def ajax_delete_analysis_attachment ( self ) : """Endpoint for attachment delete in WS"""
form = self . request . form attachment_uid = form . get ( "attachment_uid" , None ) if not attachment_uid : return "error" attachment = api . get_object_by_uid ( attachment_uid , None ) if attachment is None : return "Could not resolve attachment UID {}" . format ( attachment_uid ) # handle delete via the Atta...
def parse_time ( value : Union [ time , str ] ) -> time : """Parse a time / string and return a datetime . time . This function doesn ' t support time zone offsets . Raise ValueError if the input is well formatted but not a valid time . Raise ValueError if the input isn ' t well formatted , in particular if i...
if isinstance ( value , time ) : return value match = time_re . match ( value ) if not match : raise errors . TimeError ( ) kw = match . groupdict ( ) if kw [ 'microsecond' ] : kw [ 'microsecond' ] = kw [ 'microsecond' ] . ljust ( 6 , '0' ) kw_ = { k : int ( v ) for k , v in kw . items ( ) if v is not None ...
def Run ( self , args ) : """Reads a buffer on the client and sends it to the server ."""
# Make sure we limit the size of our output if args . length > constants . CLIENT_MAX_BUFFER_SIZE : raise RuntimeError ( "Can not read buffers this large." ) try : fd = vfs . VFSOpen ( args . pathspec , progress_callback = self . Progress ) fd . Seek ( args . offset ) offset = fd . Tell ( ) data = f...
def server_add ( s_name , s_ip , s_state = None , ** connection_args ) : '''Add a server Note : The default server state is ENABLED CLI Example : . . code - block : : bash salt ' * ' netscaler . server _ add ' serverName ' ' serverIpAddress ' salt ' * ' netscaler . server _ add ' serverName ' ' serverIpAd...
ret = True if server_exists ( s_name , ** connection_args ) : return False nitro = _connect ( ** connection_args ) if nitro is None : return False server = NSServer ( ) server . set_name ( s_name ) server . set_ipaddress ( s_ip ) if s_state is not None : server . set_state ( s_state ) try : NSServer . a...
def get_abstracts ( self , refresh = True ) : """Return a list of ScopusAbstract objects using ScopusSearch ."""
return [ ScopusAbstract ( eid , refresh = refresh ) for eid in self . get_document_eids ( refresh = refresh ) ]
def get_iam_policy ( self , client = None ) : """Retrieve the IAM policy for the bucket . See https : / / cloud . google . com / storage / docs / json _ api / v1 / buckets / getIamPolicy If : attr : ` user _ project ` is set , bills the API request to that project . : type client : : class : ` ~ google . cl...
client = self . _require_client ( client ) query_params = { } if self . user_project is not None : query_params [ "userProject" ] = self . user_project info = client . _connection . api_request ( method = "GET" , path = "%s/iam" % ( self . path , ) , query_params = query_params , _target_object = None , ) return Po...
def _validate_inputs ( actual_inputs , required_inputs , keypath = None ) : """Validate inputs . Raise exception if something is missing . args : actual _ inputs : the object / dictionary passed to a subclass of PublishablePayload required _ inputs : the object / dictionary containing keys ( and subkeys ) ...
actual_keys = set ( actual_inputs . keys ( ) ) required_keys = set ( required_inputs . keys ( ) ) if actual_keys . intersection ( required_keys ) != required_keys : prefix = '%s.' if keypath else '' output_keys = { '%s%s' % ( prefix , key ) for key in required_keys } raise Exception ( "Missing input fields....
def export ( target_folder , source_folders = None , class_type = 'all' , raise_errors = False ) : """exports the existing scripts / instruments ( future : probes ) into folder as . b26 files Args : target _ folder : target location of created . b26 script files source _ folder : singel path or list of paths ...
if class_type not in ( 'all' , 'scripts' , 'instruments' , 'probes' ) : print ( 'unknown type to export' ) return if not os . path . isdir ( target_folder ) : try : os . mkdir ( target_folder ) except : print ( ( target_folder , ' is invalid target folder' ) ) target_folder = Non...
def _handle_job_set ( function ) : """A decorator for handling ` taskhandle . JobSet ` \ s A decorator for handling ` taskhandle . JobSet ` \ s for ` do ` and ` undo ` methods of ` Change ` \ s ."""
def call ( self , job_set = taskhandle . NullJobSet ( ) ) : job_set . started_job ( str ( self ) ) function ( self ) job_set . finished_job ( ) return call
def _GetSupportedFilesInDir ( self , fileDir , fileList , supportedFormatList , ignoreDirList ) : """Recursively get all supported files given a root search directory . Supported file extensions are given as a list , as are any directories which should be ignored . The result will be appended to the given fil...
goodlogging . Log . Info ( "CLEAR" , "Parsing file directory: {0}" . format ( fileDir ) ) if os . path . isdir ( fileDir ) is True : for globPath in glob . glob ( os . path . join ( fileDir , '*' ) ) : if util . FileExtensionMatch ( globPath , supportedFormatList ) : newFile = tvfile . TVFile ( ...
def _derive_charge ( self , config ) : """Use a temperature window to identify the roast charge . The charge will manifest as a sudden downward trend on the temperature . Once found , we save it and avoid overwriting . The charge is needed in order to derive the turning point . : param config : Current snap...
if self . _roast . get ( 'charge' ) : return None self . _window . append ( config ) time , temp = list ( ) , list ( ) for x in list ( self . _window ) : time . append ( x [ 'time' ] ) temp . append ( x [ 'bean_temp' ] ) slope , intercept , r_value , p_value , std_err = linregress ( time , temp ) if slope <...
def flatten_array ( grid ) : """Takes a multi - dimensional array and returns a 1 dimensional array with the same contents ."""
grid = [ grid [ i ] [ j ] for i in range ( len ( grid ) ) for j in range ( len ( grid [ i ] ) ) ] while type ( grid [ 0 ] ) is list : grid = flatten_array ( grid ) return grid
def getPerfInfo ( rh , useridlist ) : """Get the performance information for a userid Input : Request Handle Userid to query < - may change this to a list later . Output : Dictionary containing the following : overallRC - overall return code , 0 : success , non - zero : failure rc - RC returned from S...
rh . printSysLog ( "Enter vmUtils.getPerfInfo, userid: " + useridlist ) parms = [ "-T" , rh . userid , "-c" , "1" ] results = invokeSMCLI ( rh , "Image_Performance_Query" , parms ) if results [ 'overallRC' ] != 0 : # SMCLI failed . rh . printLn ( "ES" , results [ 'response' ] ) rh . printSysLog ( "Exit vmUtils....
def to_primitive ( self , context = None ) : """. . versionadded : : 1.3.0"""
primitive = super ( ValueConstant , self ) . to_primitive ( context ) value = self . value if hasattr ( value , 'isoformat' ) : value = value . isoformat ( ) elif callable ( value ) : value = value ( ) primitive [ 'value' ] = value return primitive
def init_original_response ( self ) : """Get the original response for comparing , confirm is _ cookie _ necessary"""
no_cookie_resp = None self . is_cookie_necessary = True if 'json' in self . request : self . request [ 'data' ] = json . dumps ( self . request . pop ( 'json' ) ) . encode ( self . encoding ) r1 = self . req . request ( retry = self . retry , timeout = self . timeout , ** self . request ) if 'headers' in self . req...
def lowercase ( self ) : """Lowercase all strings in this tree . Works recursively and in - place ."""
if len ( self . children ) > 0 : for child in self . children : child . lowercase ( ) else : self . text = self . text . lower ( )
def communityvisibilitystate ( self ) : """Return the Visibility State of the Users Profile"""
if self . _communityvisibilitystate == None : return None elif self . _communityvisibilitystate in self . VisibilityState : return self . VisibilityState [ self . _communityvisibilitystate ] else : # Invalid State return None
def imagetransformer_b12l_4h_b128_uncond_dr03_tpu ( ) : """TPU config for cifar 10."""
hparams = imagetransformer_bas8l_8h_big_uncond_dr03_imgnet ( ) update_hparams_for_tpu ( hparams ) hparams . batch_size = 2 hparams . num_heads = 4 # heads are expensive on tpu hparams . num_decoder_layers = 12 hparams . block_length = 128 hparams . hidden_size = 256 hparams . filter_size = 2048 hparams . layer_preproce...
def _reset_bbox ( self ) : """This function should only be called internally . It resets the viewers bounding box based on changes to pan or scale ."""
scale_x , scale_y = self . get_scale_xy ( ) pan_x , pan_y = self . get_pan ( coord = 'data' ) [ : 2 ] win_wd , win_ht = self . get_window_size ( ) # NOTE : need to set at least a minimum 1 - pixel dimension on # the window or we get a scale calculation exception . See github # issue 431 win_wd , win_ht = max ( 1 , win_...
def getPythonVarName ( name ) : """Get the python variable name"""
return SUB_REGEX . sub ( '' , name . replace ( '+' , '_' ) . replace ( '-' , '_' ) . replace ( '.' , '_' ) . replace ( ' ' , '' ) . replace ( '/' , '_' ) ) . upper ( )
def childKeys ( self ) : """Returns the list of child keys for this settings instance . : return [ < str > , . . ]"""
if self . _customFormat : return self . _customFormat . childKeys ( ) else : return super ( XSettings , self ) . childKeys ( )
def update_entry_line ( self , key = None ) : """Updates the entry line Parameters key : 3 - tuple of Integer , defaults to current cell \t Cell to which code the entry line is updated"""
if key is None : key = self . actions . cursor cell_code = self . GetTable ( ) . GetValue ( * key ) post_command_event ( self , self . EntryLineMsg , text = cell_code )
def register ( self , request , ** kwargs ) : """Create and immediately log in a new user . Only require a email to register , username is generated automatically and a password is random generated and emailed to the user . Activation is still required for account uses after specified number of days ."""
if Site . _meta . installed : site = Site . objects . get_current ( ) else : site = RequestSite ( request ) email = kwargs [ 'email' ] # Generate random password password = User . objects . make_random_password ( ) # Generate username based off of the email supplied username = sha_constructor ( str ( email ) ) ...
def _evaluate ( self , R , z , phi = 0. , t = 0. ) : """NAME : _ evaluate PURPOSE : evaluate the potential at R , z , phi INPUT : R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time OUTPUT : Phi ( R , z , phi ) HISTORY : 2011-04-10 - Started - Bovy ( NYU ) 2018...
# Cylindrical distance Rdist = _cylR ( R , phi , self . _orb . R ( t ) , self . _orb . phi ( t ) ) # Evaluate potential return evaluatePotentials ( self . _pot , Rdist , self . _orb . z ( t ) - z , use_physical = False )
def atlas_inventory_count_missing ( inv1 , inv2 ) : """Find out how many bits are set in inv2 that are not set in inv1."""
count = 0 common = min ( len ( inv1 ) , len ( inv2 ) ) for i in xrange ( 0 , common ) : for j in xrange ( 0 , 8 ) : if ( ( 1 << ( 7 - j ) ) & ord ( inv2 [ i ] ) ) != 0 and ( ( 1 << ( 7 - j ) ) & ord ( inv1 [ i ] ) ) == 0 : count += 1 if len ( inv1 ) < len ( inv2 ) : for i in xrange ( len ( i...
def _ParseDocstring ( function ) : """Parses the functions docstring into a dictionary of type checks ."""
if not function . __doc__ : return { } type_check_dict = { } for match in param_regexp . finditer ( function . __doc__ ) : param_str = match . group ( 1 ) . strip ( ) param_splitted = param_str . split ( " " ) if len ( param_splitted ) >= 2 : type_str = " " . join ( param_splitted [ : - 1 ] ) ...
async def send ( self , metric ) : """Transform metric to JSON bytestring and send to server . Args : metric ( dict ) : Complete metric to send as JSON ."""
message = json . dumps ( metric ) . encode ( 'utf-8' ) await self . loop . create_datagram_endpoint ( lambda : UDPClientProtocol ( message ) , remote_addr = ( self . ip , self . port ) )