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def get_cql_models ( app , connection = None , keyspace = None ) : """: param app : django models module : param connection : connection name : param keyspace : keyspace : return : list of all cassandra . cqlengine . Model within app that should be synced to keyspace ."""
from . models import DjangoCassandraModel models = [ ] single_cassandra_connection = len ( list ( get_cassandra_connections ( ) ) ) == 1 is_default_connection = connection == DEFAULT_DB_ALIAS or single_cassandra_connection for name , obj in inspect . getmembers ( app ) : cql_model_types = ( cqlengine . models . Mod...
def tasks ( ) : '''Display registered tasks with their queue'''
tasks = get_tasks ( ) longest = max ( tasks . keys ( ) , key = len ) size = len ( longest ) for name , queue in sorted ( tasks . items ( ) ) : print ( '* {0}: {1}' . format ( name . ljust ( size ) , queue ) )
def deconstruct ( self ) : """Deconstruct operation ."""
return ( self . __class__ . __name__ , [ ] , { 'process' : self . process , 'field' : self . _raw_field , 'new_field' : self . new_field , } )
def merge ( self , session , checksums , title ) : '''Merges calcs into a new calc called DATASET NB : this is the PUBLIC method @ returns DATASET , error'''
calc = Output ( calcset = checksums ) cur_depth = 0 for nested_depth , grid_item , download_size in session . query ( model . Calculation . nested_depth , model . Grid . info , model . Metadata . download_size ) . filter ( model . Calculation . checksum == model . Grid . checksum , model . Grid . checksum == model . Me...
def post_map ( self , url , map , auth_map = None ) : """Gera um XML a partir dos dados do dicionário e o envia através de uma requisição POST . : param url : URL para enviar a requisição HTTP . : param map : Dicionário com os dados do corpo da requisição HTTP . : param auth _ map : Dicionário com a...
xml = dumps_networkapi ( map ) response_code , content = self . post ( url , xml , 'text/plain' , auth_map ) return response_code , content
def generate_scan_configuration_description ( scan_parameters ) : '''Generate scan parameter dictionary . This is the only way to dynamically create table with dictionary , cannot be done with tables . IsDescription Parameters scan _ parameters : list , tuple List of scan parameters names ( strings ) . Retu...
table_description = np . dtype ( [ ( key , tb . StringCol ( 512 , pos = idx ) ) for idx , key in enumerate ( scan_parameters ) ] ) return table_description
def sparql_get ( self , owner , id , query , ** kwargs ) : """SPARQL query ( via GET ) This endpoint executes SPARQL queries against a dataset or data project . SPARQL results are available in a variety of formats . By default , ` application / sparql - results + json ` will be returned . Set the ` Accept ` heade...
kwargs [ '_return_http_data_only' ] = True if kwargs . get ( 'callback' ) : return self . sparql_get_with_http_info ( owner , id , query , ** kwargs ) else : ( data ) = self . sparql_get_with_http_info ( owner , id , query , ** kwargs ) return data
def _are_cmd_nodes_same ( node1 , node2 ) : """Checks to see if two cmddnodes are the same . Two cmdnodes are defined to be the same if they have the same callbacks / helptexts / summaries ."""
# Everything in node1 should be in node2 for propertytype in node1 : if ( not propertytype in node2 or node1 [ propertytype ] != node2 [ propertytype ] ) : return False return True
def __get_stock_row ( self , stock : Stock , depth : int ) -> str : """formats stock row"""
assert isinstance ( stock , Stock ) view_model = AssetAllocationViewModel ( ) view_model . depth = depth # Symbol view_model . name = stock . symbol # Current allocation view_model . curr_allocation = stock . curr_alloc # Value in base currency view_model . curr_value = stock . value_in_base_currency # Value in securit...
def get_members ( self , retrieve = False ) : '''get pcdm : hasMember for this resource Args : retrieve ( bool ) : if True , issue . refresh ( ) on resource thereby confirming existence and retrieving payload'''
if self . exists and hasattr ( self . rdf . triples , 'pcdm' ) and hasattr ( self . rdf . triples . pcdm , 'hasMember' ) : members = [ self . repo . parse_uri ( uri ) for uri in self . rdf . triples . pcdm . hasMember ] # return return members else : return [ ]
def insert ( self , loc , column , value , allow_duplicates = False , inplace = False ) : """Insert column into molecule at specified location . Wrapper around the : meth : ` pandas . DataFrame . insert ` method ."""
out = self if inplace else self . copy ( ) out . _frame . insert ( loc , column , value , allow_duplicates = allow_duplicates ) if not inplace : return out
async def create_subprocess_with_handle ( command , display_handle , * , shell = False , cwd , ** kwargs ) : '''Writes subprocess output to a display handle as it comes in , and also returns a copy of it as a string . Throws if the subprocess returns an error . Note that cwd is a required keyword - only argumen...
# We ' re going to get chunks of bytes from the subprocess , and it ' s possible # that one of those chunks ends in the middle of a unicode character . An # incremental decoder keeps those dangling bytes around until the next # chunk arrives , so that split characters get decoded properly . Use # stdout ' s encoding , ...
def _handle_download_result ( self , resource , tmp_dir_path , sha256 , dl_size ) : """Store dled file to definitive place , write INFO file , return path ."""
fnames = tf . io . gfile . listdir ( tmp_dir_path ) if len ( fnames ) > 1 : raise AssertionError ( 'More than one file in %s.' % tmp_dir_path ) original_fname = fnames [ 0 ] tmp_path = os . path . join ( tmp_dir_path , original_fname ) self . _recorded_sizes_checksums [ resource . url ] = ( dl_size , sha256 ) if se...
def pretty_dumps ( data ) : """Return json string in pretty format . * * 中文文档 * * 将字典转化成格式化后的字符串 。"""
try : return json . dumps ( data , sort_keys = True , indent = 4 , ensure_ascii = False ) except : return json . dumps ( data , sort_keys = True , indent = 4 , ensure_ascii = True )
def complete ( self , default_output = None ) : """Marks this asynchronous Pipeline as complete . Args : default _ output : What value the ' default ' output slot should be assigned . Raises : UnexpectedPipelineError if the slot no longer exists or this method was called for a pipeline that is not async ....
# TODO : Enforce that all outputs expected by this async pipeline were # filled before this complete ( ) function was called . May required all # async functions to declare their outputs upfront . if not self . async : raise UnexpectedPipelineError ( 'May only call complete() method for asynchronous pipelines.' ) s...
def _add_ubridge_ethernet_connection ( self , bridge_name , ethernet_interface , block_host_traffic = False ) : """Creates a connection with an Ethernet interface in uBridge . : param bridge _ name : bridge name in uBridge : param ethernet _ interface : Ethernet interface name : param block _ host _ traffic :...
if sys . platform . startswith ( "linux" ) and block_host_traffic is False : # on Linux we use RAW sockets by default excepting if host traffic must be blocked yield from self . _ubridge_send ( 'bridge add_nio_linux_raw {name} "{interface}"' . format ( name = bridge_name , interface = ethernet_interface ) ) elif sy...
def default ( session ) : """Default unit test session . This is intended to be run * * without * * an interpreter set , so that the current ` ` python ` ` ( on the ` ` PATH ` ` ) or the version of Python corresponding to the ` ` nox ` ` binary the ` ` PATH ` ` can run the tests ."""
# Install all test dependencies , then install local packages in - place . session . install ( "mock" , "pytest" , "pytest-cov" ) for local_dep in LOCAL_DEPS : session . install ( "-e" , local_dep ) # Pyarrow does not support Python 3.7 dev_install = ".[all]" session . install ( "-e" , dev_install ) # IPython does ...
def hide_arp_holder_arp_entry_interfacetype_FortyGigabitEthernet_FortyGigabitEthernet ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) hide_arp_holder = ET . SubElement ( config , "hide-arp-holder" , xmlns = "urn:brocade.com:mgmt:brocade-arp" ) arp_entry = ET . SubElement ( hide_arp_holder , "arp-entry" ) arp_ip_address_key = ET . SubElement ( arp_entry , "arp-ip-address" ) arp_ip_address_key . text = kwargs . pop ( ...
def spendables_for_address ( self , address ) : """Return a list of Spendable objects for the given bitcoin address ."""
URL = self . api_domain + "/unspent?active=%s" % address r = json . loads ( urlopen ( URL ) . read ( ) . decode ( "utf8" ) ) spendables = [ ] for u in r [ "unspent_outputs" ] : coin_value = u [ "value" ] script = h2b ( u [ "script" ] ) previous_hash = h2b ( u [ "tx_hash" ] ) previous_index = u [ "tx_out...
def refactor_froms_to_imports ( self , offset ) : """Converting imports of the form " from . . . " to " import . . . " ."""
refactor = ImportOrganizer ( self . project ) changes = refactor . froms_to_imports ( self . resource , offset ) return translate_changes ( changes )
def run_with_falcon ( self ) : """runs the falcon / http based test server"""
from wsgiref import simple_server from zengine . server import app httpd = simple_server . make_server ( self . manager . args . addr , int ( self . manager . args . port ) , app ) httpd . serve_forever ( )
def copy ( self ) : """Make a hard copy of ` self ` . : return : A new LiveDefinition instance . : rtype : angr . analyses . ddg . LiveDefinitions"""
ld = LiveDefinitions ( ) ld . _memory_map = self . _memory_map . copy ( ) ld . _register_map = self . _register_map . copy ( ) ld . _defs = self . _defs . copy ( ) return ld
def _dataslice ( self , data , indices ) : """Returns slice of data element if the item is deep indexable . Warns if attempting to slice an object that has not been declared deep indexable ."""
if self . _deep_indexable and isinstance ( data , Dimensioned ) and indices : return data [ indices ] elif len ( indices ) > 0 : self . param . warning ( 'Cannot index into data element, extra data' ' indices ignored.' ) return data
def on_exit ( self ) : """When you click to exit , this function is called , prompts whether to save"""
answer = messagebox . askyesnocancel ( "Exit" , "Do you want to save as you quit the application?" ) if answer : self . save ( ) self . quit ( ) self . destroy ( ) elif answer is None : pass # the cancel action else : self . quit ( ) self . destroy ( )
def build ( config , archiver , operators ) : """Build the history given a archiver and collection of operators . : param config : The wily configuration : type config : : namedtuple : ` wily . config . WilyConfig ` : param archiver : The archiver to use : type archiver : : namedtuple : ` wily . archivers ....
try : logger . debug ( f"Using {archiver.name} archiver module" ) archiver = archiver . cls ( config ) revisions = archiver . revisions ( config . path , config . max_revisions ) except InvalidGitRepositoryError : # TODO : This logic shouldn ' t really be here ( SoC ) logger . info ( f"Defaulting back t...
def delete_app_info ( app_id ) : """delete app info from local db"""
try : conn = get_conn ( ) c = conn . cursor ( ) c . execute ( "DELETE FROM container WHERE app_id='{0}'" . format ( app_id ) ) c . execute ( "DELETE FROM app WHERE id='{0}'" . format ( app_id ) ) conn . commit ( ) # print ' clear old app % s in db succeed ! ' % app _ id except Exception , e : ...
def query ( self , area = None , date = None , raw = None , area_relation = 'Intersects' , order_by = None , limit = None , offset = 0 , ** keywords ) : """Query the OpenSearch API with the coordinates of an area , a date interval and any other search keywords accepted by the API . Parameters area : str , opt...
query = self . format_query ( area , date , raw , area_relation , ** keywords ) self . logger . debug ( "Running query: order_by=%s, limit=%s, offset=%s, query=%s" , order_by , limit , offset , query ) formatted_order_by = _format_order_by ( order_by ) response , count = self . _load_query ( query , formatted_order_by ...
def _fullqualname_builtin_py3 ( obj ) : """Fully qualified name for ' builtin _ function _ or _ method ' objects in Python 3."""
if obj . __module__ is not None : # built - in functions module = obj . __module__ else : # built - in methods if inspect . isclass ( obj . __self__ ) : module = obj . __self__ . __module__ else : module = obj . __self__ . __class__ . __module__ return module + '.' + obj . __qualname__
def _build_mappings ( self , classes : Sequence [ type ] ) -> Tuple [ Mapping [ type , Sequence [ type ] ] , Mapping [ type , Sequence [ type ] ] ] : """Collect all bases and organize into parent / child mappings ."""
parents_to_children : MutableMapping [ type , Set [ type ] ] = { } children_to_parents : MutableMapping [ type , Set [ type ] ] = { } visited_classes : Set [ type ] = set ( ) class_stack = list ( classes ) while class_stack : class_ = class_stack . pop ( ) if class_ in visited_classes : continue vis...
def read_trailer ( self ) : '''Read the HTTP trailer fields . Returns : bytes : The trailer data . Coroutine .'''
_logger . debug ( 'Reading chunked trailer.' ) trailer_data_list = [ ] while True : trailer_data = yield from self . _connection . readline ( ) trailer_data_list . append ( trailer_data ) if not trailer_data . strip ( ) : break return b'' . join ( trailer_data_list )
def _fix_unmapped ( mapped_file , unmapped_file , data ) : """The unmapped . bam file up until at least Tophat 2.1.1 is broken in various ways , see https : / / github . com / cbrueffer / tophat - recondition for details . Run TopHat - Recondition to fix these issues ."""
out_file = os . path . splitext ( unmapped_file ) [ 0 ] + "_fixup.bam" if file_exists ( out_file ) : return out_file assert os . path . dirname ( mapped_file ) == os . path . dirname ( unmapped_file ) cmd = config_utils . get_program ( "tophat-recondition" , data ) cmd += " -q" tophat_out_dir = os . path . dirname ...
def format_author_ed ( citation_elements ) : """Standardise to ( ed . ) and ( eds . ) e . g . Remove extra space in ( ed . )"""
for el in citation_elements : if el [ 'type' ] == 'AUTH' : el [ 'auth_txt' ] = el [ 'auth_txt' ] . replace ( '(ed. )' , '(ed.)' ) el [ 'auth_txt' ] = el [ 'auth_txt' ] . replace ( '(eds. )' , '(eds.)' ) return citation_elements
def _request_access_token ( grant_type , client_id = None , client_secret = None , scopes = None , code = None , redirect_url = None , refresh_token = None ) : """Make an HTTP POST to request an access token . Parameters grant _ type ( str ) Either ' client _ credientials ' ( Client Credentials Grant ) or '...
url = build_url ( auth . AUTH_HOST , auth . ACCESS_TOKEN_PATH ) if isinstance ( scopes , set ) : scopes = ' ' . join ( scopes ) args = { 'grant_type' : grant_type , 'client_id' : client_id , 'client_secret' : client_secret , 'scope' : scopes , 'code' : code , 'redirect_uri' : redirect_url , 'refresh_token' : refres...
def convert2 ( self , imtls , sids ) : """Convert a probability map into a composite array of shape ( N , ) and dtype ` imtls . dt ` . : param imtls : DictArray instance : param sids : the IDs of the sites we are interested in : returns : an array of curves of shape ( N , )"""
assert self . shape_z == 1 , self . shape_z curves = numpy . zeros ( len ( sids ) , imtls . dt ) for imt in curves . dtype . names : curves_by_imt = curves [ imt ] for i , sid in numpy . ndenumerate ( sids ) : try : pcurve = self [ sid ] except KeyError : pass ...
def as_pyemu_matrix ( self , typ = Matrix ) : """Create a pyemu . Matrix from the Ensemble . Parameters typ : pyemu . Matrix or derived type the type of matrix to return Returns pyemu . Matrix : pyemu . Matrix"""
x = self . values . copy ( ) . astype ( np . float ) return typ ( x = x , row_names = list ( self . index ) , col_names = list ( self . columns ) )
def all_gather ( data ) : """Run all _ gather on arbitrary picklable data ( not necessarily tensors ) Args : data : any picklable object Returns : list [ data ] : list of data gathered from each rank"""
world_size = get_world_size ( ) if world_size == 1 : return [ data ] # serialized to a Tensor buffer = pickle . dumps ( data ) storage = torch . ByteStorage . from_buffer ( buffer ) tensor = torch . ByteTensor ( storage ) . to ( "cuda" ) # obtain Tensor size of each rank local_size = torch . IntTensor ( [ tensor . ...
def _flush_decompressor ( self ) : '''Return any data left in the decompressor .'''
if self . _decompressor : try : return self . _decompressor . flush ( ) except zlib . error as error : raise ProtocolError ( 'zlib flush error: {0}.' . format ( error ) ) from error else : return b''
def _format_reinit_msg ( self , name , kwargs = None , triggered_directly = True ) : """Returns a message that informs about re - initializing a compoment . Sometimes , the module or optimizer need to be re - initialized . Not only should the user receive a message about this but also should they be informed ...
msg = "Re-initializing {}" . format ( name ) if triggered_directly and kwargs : msg += ( " because the following parameters were re-set: {}." . format ( ', ' . join ( sorted ( kwargs ) ) ) ) else : msg += "." return msg
def _process_data ( * kwarg_names ) : """Helper function to handle data keyword argument"""
def _data_decorator ( func ) : @ functools . wraps ( func ) def _mark_with_data ( * args , ** kwargs ) : data = kwargs . pop ( 'data' , None ) if data is None : return func ( * args , ** kwargs ) else : data_args = [ data [ i ] if hashable ( data , i ) else i for ...
def parse_url ( self ) -> RequestUrl : """获取url解析对象"""
if self . _URL is None : current_url = b"%s://%s%s" % ( encode_str ( self . schema ) , encode_str ( self . host ) , self . _current_url ) self . _URL = RequestUrl ( current_url ) return cast ( RequestUrl , self . _URL )
def _update_trsys ( self , event ) : """Transform object ( s ) have changed for this Node ; assign these to the visual ' s TransformSystem ."""
doc = self . document_node scene = self . scene_node root = self . root_node self . transforms . visual_transform = self . node_transform ( scene ) self . transforms . scene_transform = scene . node_transform ( doc ) self . transforms . document_transform = doc . node_transform ( root ) Node . _update_trsys ( self , ev...
def post_comment_ajax ( request , using = None ) : """Post a comment , via an Ajax call ."""
if not request . is_ajax ( ) : return HttpResponseBadRequest ( "Expecting Ajax call" ) # This is copied from django _ comments . # Basically that view does too much , and doesn ' t offer a hook to change the rendering . # The request object is not passed to next _ redirect for example . # This is a separate view to...
def has_linguist_kwargs ( self , kwargs ) : """Parses the given kwargs and returns True if they contain linguist lookups ."""
for k in kwargs : if self . is_linguist_lookup ( k ) : return True return False
def extract_first_elements ( nested_list ) : """A Python function that returns the first element of every sublist within the provided list . Examples : extract _ first _ elements ( [ [ 1 , 2 ] , [ 3 , 4 , 5 ] , [ 6 , 7 , 8 , 9 ] ] ) - > [ 1 , 3 , 6] extract _ first _ elements ( [ [ 1 , 2 , 3 ] , [ 4 , 5 ] ] )...
return [ sublist [ 0 ] for sublist in nested_list ]
def run ( self , lam , initial_values = None ) : '''Run the graph - fused logit lasso with a fixed lambda penalty .'''
if initial_values is not None : if self . k == 0 and self . trails is not None : betas , zs , us = initial_values else : betas , us = initial_values else : if self . k == 0 and self . trails is not None : betas = [ np . zeros ( self . num_nodes , dtype = 'double' ) for _ in self . bi...
def sample_forward_transitions ( self , batch_size , batch_info , forward_steps : int , discount_factor : float ) -> Transitions : """Sample transitions from replay buffer with _ forward steps _ . That is , instead of getting a transition s _ t - > s _ t + 1 with reward r , get a transition s _ t - > s _ t + n ...
raise NotImplementedError
def add_404_page ( app ) : """Build an extra ` ` 404 . html ` ` page if no ` ` " 404 " ` ` key is in the ` ` html _ additional _ pages ` ` config ."""
is_epub = isinstance ( app . builder , EpubBuilder ) config_pages = app . config . html_additional_pages if not is_epub and "404" not in config_pages : yield ( "404" , { } , "404.html" )
def mark_best_classifications ( errors ) : """Convenience wrapper around mark _ best _ classification . Finds the best match for each TextLogError in errors , handling no match meeting the cut off score and then mark _ best _ classification to save that information ."""
for text_log_error in errors : best_match = get_best_match ( text_log_error ) if not best_match : continue mark_best_classification ( text_log_error , best_match . classified_failure )
def debug ( context ) : """Outputs a whole load of debugging information , including the current context and imported modules . Sample usage : : < pre > { % debug % } < / pre >"""
from pprint import pformat output = [ pformat ( val ) for val in context ] output . append ( '\n\n' ) output . append ( pformat ( sys . modules ) ) return '' . join ( output )
def validate ( self , value , model_instance ) : """Validates value and throws ValidationError . Subclasses should override this to provide validation logic ."""
return super ( self . __class__ , self ) . validate ( value . value , model_instance )
def _gate_height ( self , gate ) : """Return the height to use for this gate . : param string gate : The name of the gate whose height is desired . : return : Height of the gate . : rtype : float"""
try : height = self . settings [ 'gates' ] [ gate . __class__ . __name__ ] [ 'height' ] except KeyError : height = .5 return height
def peer_relation_id ( ) : '''Get the peers relation id if a peers relation has been joined , else None .'''
md = metadata ( ) section = md . get ( 'peers' ) if section : for key in section : relids = relation_ids ( key ) if relids : return relids [ 0 ] return None
def insert ( self , action : Action , where : 'Union[int, Delegate.Where]' ) : """add a new action with specific priority > > > delegate : Delegate > > > delegate . insert ( lambda task , product , ctx : print ( product ) , where = Delegate . Where . after ( lambda action : action . _ _ name _ _ = = ' myfunc ' ...
if isinstance ( where , int ) : self . actions . insert ( where , action ) return here = where ( self . actions ) self . actions . insert ( here , action )
def ping ( host , timeout = False , return_boolean = False ) : '''Performs a ping to a host CLI Example : . . code - block : : bash salt ' * ' network . ping archlinux . org . . versionadded : : 2016.11.0 Return a True or False instead of ping output . . . code - block : : bash salt ' * ' network . pi...
if timeout : # Windows ping differs by having timeout be for individual echo requests . ' # Divide timeout by tries to mimic BSD behaviour . timeout = int ( timeout ) * 1000 // 4 cmd = [ 'ping' , '-n' , '4' , '-w' , six . text_type ( timeout ) , salt . utils . network . sanitize_host ( host ) ] else : cmd =...
def randomTraversal ( sensations , numTraversals ) : """Given a list of sensations , return the SDRs that would be obtained by numTraversals random traversals of that set of sensations . Each sensation is a dict mapping cortical column index to a pair of SDR ' s ( one location and one feature ) ."""
newSensations = [ ] for _ in range ( numTraversals ) : s = copy . deepcopy ( sensations ) random . shuffle ( s ) newSensations += s return newSensations
def setCurrent ( self , state = True ) : """Marks this view as the current source based on the inputed flag . This method will return True if the currency changes . : return < bool > | changed"""
if self . _current == state : return False widget = self . viewWidget ( ) if widget : for other in widget . findChildren ( type ( self ) ) : if other . isCurrent ( ) : other . _current = False if not other . signalsBlocked ( ) : other . currentStateChanged . emit ...
def tripleexprlabel_to_iriref ( self , tripleExprLabel : ShExDocParser . TripleExprLabelContext ) -> Union [ ShExJ . BNODE , ShExJ . IRIREF ] : """tripleExprLabel : iri | blankNode"""
if tripleExprLabel . iri ( ) : return self . iri_to_iriref ( tripleExprLabel . iri ( ) ) else : return ShExJ . BNODE ( tripleExprLabel . blankNode ( ) . getText ( ) )
def describe_keyspaces ( self , ) : """list the defined keyspaces in this cluster"""
self . _seqid += 1 d = self . _reqs [ self . _seqid ] = defer . Deferred ( ) self . send_describe_keyspaces ( ) return d
def t_ID ( t ) : r'[ a - zA - Z ] [ a - zA - Z0-9 ] * [ $ % ] ?'
t . type = reserved . get ( t . value . lower ( ) , 'ID' ) callables = { api . constants . CLASS . array : 'ARRAY_ID' , } if t . type != 'ID' : t . value = t . type else : entry = api . global_ . SYMBOL_TABLE . get_entry ( t . value ) if api . global_ . SYMBOL_TABLE is not None else None if entry : ...
def q_tank ( sed_inputs = sed_dict ) : """Return the maximum flow through one sedimentation tank . Parameters sed _ inputs : dict A dictionary of all of the constant inputs needed for sedimentation tank calculations can be found in sed . yaml Returns float Maximum flow through one sedimentation tank ...
return ( sed_inputs [ 'tank' ] [ 'L' ] * sed_inputs [ 'tank' ] [ 'vel_up' ] . to ( u . m / u . s ) * sed_inputs [ 'tank' ] [ 'W' ] . to ( u . m ) ) . magnitude
def environment_var_to_bool ( env_var ) : """Converts an environment variable to a boolean Returns False if the environment variable is False , 0 or a case - insenstive string " false " or " 0 " ."""
# Try to see if env _ var can be converted to an int try : env_var = int ( env_var ) except ValueError : pass if isinstance ( env_var , numbers . Number ) : return bool ( env_var ) elif is_a_string ( env_var ) : env_var = env_var . lower ( ) . strip ( ) if env_var in "false" : return False ...
def copy_from ( self , src , dest ) : """copy a file or a directory from container or image to host system . If you are copying directories , the target directory must not exist ( this function is using ` shutil . copytree ` to copy directories and that ' s a requirement of the function ) . In case the director...
p = self . p ( src ) if os . path . isfile ( p ) : logger . info ( "copying file %s to %s" , p , dest ) shutil . copy2 ( p , dest ) else : logger . info ( "copying directory %s to %s" , p , dest ) shutil . copytree ( p , dest )
def elem_add ( self , idx = None , name = None , ** kwargs ) : """overloading elem _ add function of a JIT class"""
self . jit_load ( ) if self . loaded : return self . system . __dict__ [ self . name ] . elem_add ( idx , name , ** kwargs )
def _add_plots_to_output ( out , data ) : """Add CNVkit plots summarizing called copy number values ."""
out [ "plot" ] = { } diagram_plot = _add_diagram_plot ( out , data ) if diagram_plot : out [ "plot" ] [ "diagram" ] = diagram_plot scatter = _add_scatter_plot ( out , data ) if scatter : out [ "plot" ] [ "scatter" ] = scatter scatter_global = _add_global_scatter_plot ( out , data ) if scatter_global : out [...
def _DrawTrips ( self , triplist , colpar = "" ) : """Generates svg polylines for each transit trip . Args : # Class Trip is defined in transitfeed . py [ Trip , Trip , . . . ] Returns : # A string containing a polyline tag for each trip ' < polyline class = " T " stroke = " # 336633 " points = " 433,0 ...
stations = [ ] if not self . _stations and triplist : self . _stations = self . _CalculateYLines ( self . _TravelTimes ( triplist ) ) if not self . _stations : self . _AddWarning ( "Failed to use traveltimes for graph" ) self . _stations = self . _CalculateYLines ( self . _Uniform ( triplist ) )...
def bind ( cls , origin , handler , * , name = None ) : """Bind this object to the given origin and handler . : param origin : An instance of ` Origin ` . : param handler : An instance of ` bones . HandlerAPI ` . : return : A subclass of this class ."""
name = cls . __name__ if name is None else name attrs = { "_origin" : origin , "_handler" : handler , "__module__" : "origin" , # Could do better ? } return type ( name , ( cls , ) , attrs )
def do_alarm_definition_delete ( mc , args ) : '''Delete the alarm definition .'''
fields = { } fields [ 'alarm_id' ] = args . id try : mc . alarm_definitions . delete ( ** fields ) except ( osc_exc . ClientException , k_exc . HttpError ) as he : raise osc_exc . CommandError ( '%s\n%s' % ( he . message , he . details ) ) else : print ( 'Successfully deleted alarm definition' )
def expect_file_to_be_valid_json ( self , schema = None , result_format = None , include_config = False , catch_exceptions = None , meta = None ) : """schema : string optional JSON schema file on which JSON data file is validated against result _ format ( str or None ) : Which output mode to use : ` BOOLEAN _...
success = False if schema is None : try : with open ( self . _path , 'r' ) as f : json . load ( f ) success = True except ValueError : success = False else : try : with open ( schema , 'r' ) as s : schema_data = s . read ( ) sdata = json . load...
def get_bonded_structure ( self , structure , decorate = False ) : """Obtain a MoleculeGraph object using this NearNeighbor class . Requires the optional dependency networkx ( pip install networkx ) . Args : structure : Molecule object . decorate ( bool ) : whether to annotate site properties with order...
# requires optional dependency which is why it ' s not a top - level import from pymatgen . analysis . graphs import MoleculeGraph if decorate : # Decorate all sites in the underlying structure # with site properties that provides information on the # coordination number and coordination pattern based # on the ( curren...
def delete ( self , using = None , soft = True , * args , ** kwargs ) : """Soft delete object ( set its ` ` is _ removed ` ` field to True ) . Actually delete object if setting ` ` soft ` ` to False ."""
if soft : self . is_removed = True self . save ( using = using ) else : return super ( SoftDeletableModel , self ) . delete ( using = using , * args , ** kwargs )
def append ( self , key , value , format = None , append = True , columns = None , dropna = None , ** kwargs ) : """Append to Table in file . Node must already exist and be Table format . Parameters key : object value : { Series , DataFrame } format : ' table ' is the default table ( t ) : table format ...
if columns is not None : raise TypeError ( "columns is not a supported keyword in append, " "try data_columns" ) if dropna is None : dropna = get_option ( "io.hdf.dropna_table" ) if format is None : format = get_option ( "io.hdf.default_format" ) or 'table' kwargs = self . _validate_format ( format , kwargs...
def _begin_disconnection_action ( self , action ) : """Begin a disconnection attempt Args : action ( ConnectionAction ) : the action object describing what we are connecting to and what the result of the operation was"""
conn_key = action . data [ 'id' ] callback = action . data [ 'callback' ] if self . _get_connection_state ( conn_key ) != self . Idle : callback ( conn_key , self . id , False , 'Cannot start disconnection, connection is not idle' ) return # Cannot be None since we checked above to make sure it exists data = se...
def _parse_header_id ( line ) : """Pull the transcript or protein identifier from the header line which starts with ' > '"""
if type ( line ) is not binary_type : raise TypeError ( "Expected header line to be of type %s but got %s" % ( binary_type , type ( line ) ) ) if len ( line ) <= 1 : raise ValueError ( "No identifier on FASTA line" ) # split line at first space to get the unique identifier for # this sequence space_index = line...
def get_queryset ( self ) : """Returns the list of items for this view ."""
forums = self . request . forum_permission_handler . get_moderation_queue_forums ( self . request . user , ) qs = super ( ) . get_queryset ( ) qs = qs . filter ( topic__forum__in = forums , approved = False ) return qs . order_by ( '-created' )
def config ( self ) : """load the passwords from the config file"""
if not hasattr ( self , '_config' ) : raw_config = configparser . RawConfigParser ( ) f = self . _open ( ) if f : raw_config . readfp ( f ) f . close ( ) self . _config = raw_config return self . _config
def is_inside_bounds ( value , params ) : """Return ` ` True ` ` if ` ` value ` ` is contained in ` ` params ` ` . This method supports broadcasting in the sense that for ` ` params . ndim > = 2 ` ` , if more than one value is given , the inputs are broadcast against each other . Parameters value : ` arra...
if value in params : # Single parameter return True else : if params . ndim == 1 : return params . contains_all ( np . ravel ( value ) ) else : # Flesh out and flatten to check bounds bcast_value = np . broadcast_arrays ( * value ) stacked_value = np . vstack ( bcast_value ) ...
def move_tab ( self , index_from , index_to ) : """Move tab ( tabs themselves have already been moved by the tabwidget )"""
filename = self . filenames . pop ( index_from ) client = self . clients . pop ( index_from ) self . filenames . insert ( index_to , filename ) self . clients . insert ( index_to , client ) self . update_tabs_text ( ) self . sig_update_plugin_title . emit ( )
def ExtractEvents ( self , parser_mediator , registry_key , ** kwargs ) : """Extracts events from a Windows Registry key . Args : parser _ mediator ( ParserMediator ) : mediates interactions between parsers and other components , such as storage and dfvfs . registry _ key ( dfwinreg . WinRegistryKey ) : Win...
for subkey in registry_key . GetSubkeys ( ) : drive_letter = subkey . name if not drive_letter : continue values_dict = { 'DriveLetter' : drive_letter , 'Type' : 'Mapped Drive' } # Get the remote path if it exists . remote_path_value = subkey . GetValueByName ( 'RemotePath' ) if remote_p...
def put_annotation ( self , key , value ) : """Annotate current active trace entity with a key - value pair . Annotations will be indexed for later search query . : param str key : annotation key : param object value : annotation value . Any type other than string / number / bool will be dropped"""
entity = self . get_trace_entity ( ) if entity and entity . sampled : entity . put_annotation ( key , value )
def sources_to_nr_vars ( sources ) : """Converts a source type to number of sources mapping into a source numbering variable to number of sources mapping . If , for example , we have ' point ' , ' gaussian ' and ' sersic ' source types , then passing the following dict as an argument sources _ to _ nr _ var...
sources = default_sources ( ** sources ) try : return OrderedDict ( ( SOURCE_VAR_TYPES [ name ] , nr ) for name , nr in sources . iteritems ( ) ) except KeyError as e : raise KeyError ( ( 'No source type ' '%s' ' is ' 'registered. Valid source types ' 'are %s' ) % ( e , SOURCE_VAR_TYPES . keys ( ) ) )
def clean ( self , data ) : """Method returns cleaned list of stock closing prices ( i . e . dict ( date = datetime . date ( 2015 , 1 , 2 ) , price = ' 23.21 ' ) ) ."""
cleaned_data = list ( ) if not isinstance ( data , list ) : data = [ data ] for item in data : date = datetime . datetime . strptime ( item [ 'Date' ] , '%Y-%m-%d' ) . date ( ) cleaned_data . append ( dict ( price = item [ 'Adj_Close' ] , date = date ) ) return cleaned_data
def getAllChildNodes ( self ) : '''getAllChildNodes - Gets all the children , and their children , and their children , and so on , all the way to the end as a TagCollection . Use . childNodes for a regular list @ return TagCollection < AdvancedTag > - A TagCollection of all children ( and their children recu...
ret = TagCollection ( ) # Scan all the children of this node for child in self . children : # Append each child ret . append ( child ) # Append children ' s children recursive ret += child . getAllChildNodes ( ) return ret
def _is_valid_datatype ( datatype_instance ) : """Returns true if datatype _ instance is a valid datatype object and false otherwise ."""
# Remap so we can still use the python types for the simple cases global _simple_type_remap if datatype_instance in _simple_type_remap : return True # Now set the protobuf from this interface . if isinstance ( datatype_instance , ( Int64 , Double , String , Array ) ) : return True elif isinstance ( datatype_ins...
def get_hw_virt_ex_property ( self , property_p ) : """Returns the value of the specified hardware virtualization boolean property . in property _ p of type : class : ` HWVirtExPropertyType ` Property type to query . return value of type bool Property value . raises : class : ` OleErrorInvalidarg ` Inva...
if not isinstance ( property_p , HWVirtExPropertyType ) : raise TypeError ( "property_p can only be an instance of type HWVirtExPropertyType" ) value = self . _call ( "getHWVirtExProperty" , in_p = [ property_p ] ) return value
def get_instance ( self , payload ) : """Build an instance of TaskInstance : param dict payload : Payload response from the API : returns : twilio . rest . autopilot . v1 . assistant . task . TaskInstance : rtype : twilio . rest . autopilot . v1 . assistant . task . TaskInstance"""
return TaskInstance ( self . _version , payload , assistant_sid = self . _solution [ 'assistant_sid' ] , )
def process_request ( self , request ) : """Process a request ."""
batcher = PrioritizedBatcher . global_instance ( ) if batcher . is_started : # This can happen in old - style middleware if consequent middleware # raises exception and thus ` process _ response ` is not called . # Described under 3rd point of differences : # https : / / docs . djangoproject . com / en / 1.11 / topics ...
def map_frames ( self , old_indices ) : '''Rewrite the feature indexes based on the next frame ' s identities old _ indices - for each feature in the new frame , the index of the old feature'''
nfeatures = len ( old_indices ) noldfeatures = len ( self . state_vec ) if nfeatures > 0 : self . state_vec = self . state_vec [ old_indices ] self . state_cov = self . state_cov [ old_indices ] self . noise_var = self . noise_var [ old_indices ] if self . has_cached_obs_vec : self . obs_vec = s...
def simulate ( t = 1000 , poly = ( 0. , ) , sinusoids = None , sigma = 0 , rw = 0 , irw = 0 , rrw = 0 ) : """Simulate a random signal with seasonal ( sinusoids ) , linear and quadratic trend , RW , IRW , and RRW Arguments : t ( int or list of float ) : number of samples or time vector , default = 1000 poly ( ...
if t and isinstance ( t , int ) : t = np . arange ( t , dtype = np . float64 ) else : t = np . array ( t , dtype = np . float64 ) N = len ( t ) poly = poly or ( 0. , ) poly = listify ( poly ) y = np . polyval ( poly , t ) sinusoids = listify ( sinusoids or [ ] ) if any ( isinstance ( ATP , ( int , float ) ) for...
def get_filename ( self ) : """Return ` ` self . filename ` ` if set otherwise return the template basename with a ` ` . pdf ` ` extension . : rtype : str"""
if self . filename is None : name = splitext ( basename ( self . template_name ) ) [ 0 ] return '{}.pdf' . format ( name ) return self . filename
def comparable ( self ) : """str : comparable representation of the path specification ."""
sub_comparable_string = 'location: {0:s}' . format ( self . location ) return self . _GetComparable ( sub_comparable_string = sub_comparable_string )
def get_setting ( self , key , converter = None , choices = None ) : '''Returns the settings value for the provided key . If converter is str , unicode , bool or int the settings value will be returned converted to the provided type . If choices is an instance of list or tuple its item at position of the se...
# TODO : allow pickling of settings items ? # TODO : STUB THIS OUT ON CLI value = self . addon . getSetting ( id = key ) if converter is str : return value elif converter is unicode : return value . decode ( 'utf-8' ) elif converter is bool : return value == 'true' elif converter is int : return int ( v...
def _from_dict ( cls , _dict ) : """Initialize a TranslationModels object from a json dictionary ."""
args = { } if 'models' in _dict : args [ 'models' ] = [ TranslationModel . _from_dict ( x ) for x in ( _dict . get ( 'models' ) ) ] else : raise ValueError ( 'Required property \'models\' not present in TranslationModels JSON' ) return cls ( ** args )
def draw_points ( self , * points ) : """Draw multiple points on the current rendering target . Args : * points ( Point ) : The points to draw . Raises : SDLError : If an error is encountered ."""
point_array = ffi . new ( 'SDL_Point[]' , len ( points ) ) for i , p in enumerate ( points ) : point_array [ i ] = p . _ptr [ 0 ] check_int_err ( lib . SDL_RenderDrawPoints ( self . _ptr , point_array , len ( points ) ) )
def to_dict ( self , remove_nones = False ) : """Creates a dictionary representation of the object . : param remove _ nones : Whether ` ` None ` ` values should be filtered out of the dictionary . Defaults to ` ` False ` ` . : return : The dictionary representation ."""
if remove_nones : return { k : v for k , v in self . to_dict ( ) . items ( ) if v is not None } else : raise NotImplementedError ( )
def show_prediction_labels_on_image ( img_path , predictions ) : """Shows the face recognition results visually . : param img _ path : path to image to be recognized : param predictions : results of the predict function : return :"""
pil_image = Image . open ( img_path ) . convert ( "RGB" ) draw = ImageDraw . Draw ( pil_image ) for name , ( top , right , bottom , left ) in predictions : # Draw a box around the face using the Pillow module draw . rectangle ( ( ( left , top ) , ( right , bottom ) ) , outline = ( 0 , 0 , 255 ) ) # There ' s a ...
def addTable ( D ) : """Add any table type to the given dataset . Use prompts to determine index locations and table type . : param dict D : Metadata ( dataset ) : param dict dat : Metadata ( table ) : return dict D : Metadata ( dataset )"""
_swap = { "1" : "measurement" , "2" : "summary" , "3" : "ensemble" , "4" : "distribution" } print ( "What type of table would you like to add?\n" "1: measurement\n" "2: summary\n" "3: ensemble (under development)\n" "4: distribution (under development)\n" "\n Note: if you want to add a whole model, use the addModel() f...
def restore ( self ) : """Restore the application config files . Algorithm : if exists mackup / file if exists home / file are you sure ? if sure rm home / file link mackup / file home / file else link mackup / file home / file"""
# For each file used by the application for filename in self . files : ( home_filepath , mackup_filepath ) = self . getFilepaths ( filename ) # If the file exists and is not already pointing to the mackup file # and the folder makes sense on the current platform ( Don ' t sync # any subfolder of ~ / Lib...
def wrap_json_body ( func = None , * , preserve_raw_body = False ) : """A middleware that parses the body of json requests and add it to the request under the ` body ` attribute ( replacing the previous value ) . Can preserve the original value in a new attribute ` raw _ body ` if you give preserve _ raw _ bo...
if func is None : return functools . partial ( wrap_json_body , preserve_raw_body = preserve_raw_body ) @ functools . wraps ( func ) def wrapper ( request , * args , ** kwargs ) : ctype , pdict = parse_header ( request . headers . get ( 'Content-Type' , '' ) ) if preserve_raw_body : request . raw_bo...
def extractDates ( inp , tz = None , now = None ) : """Extract semantic date information from an input string . This is a convenience method which would only be used if you ' d rather not initialize a DateService object . Args : inp ( str ) : The input string to be parsed . tz : An optional Pytz timezone ...
service = DateService ( tz = tz , now = now ) return service . extractDates ( inp )
def handler ( self , event , context ) : """An AWS Lambda function which parses specific API Gateway input into a WSGI request , feeds it to our WSGI app , procceses the response , and returns that back to the API Gateway ."""
settings = self . settings # If in DEBUG mode , log all raw incoming events . if settings . DEBUG : logger . debug ( 'Zappa Event: {}' . format ( event ) ) # Set any API Gateway defined Stage Variables # as env vars if event . get ( 'stageVariables' ) : for key in event [ 'stageVariables' ] . keys ( ) : ...