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def ernst_table_exporter ( self , cycle , outfname = 'table_out' , sheetname = 'Sheet 1' ) : """This routine takes NuGrid data ( model output ) for a given cycle and writes it into an Excel sheet . This is one format as requested by Ernst Zinner in June 2013 ( through Marco ) . If you want all radioactive iso...
from xlsxwriter . workbook import Workbook # https : / / xlsxwriter . readthedocs . org / Note : We neex xlswriter . Please meake sure it is installed . Run pip install xlsxwriter to install it using pip . If pip is not installed , install it via easy _ install pip . Depending on the system you are on , you might need ...
def image_create ( cmptparms , cspace ) : """Wrapper for openjpeg library function opj _ image _ create ."""
lst = [ ctypes . c_int , ctypes . POINTER ( ImageComptParmType ) , ctypes . c_int ] OPENJPEG . opj_image_create . argtypes = lst OPENJPEG . opj_image_create . restype = ctypes . POINTER ( ImageType ) image = OPENJPEG . opj_image_create ( len ( cmptparms ) , cmptparms , cspace ) return ( image )
def draw_line ( self , start , end , color ) : """Draw a line with the given color on the screen . : param start : Start point of the line : param end : End point of the line : param color : Color of the line : type start : tuple : type end : tuple : type color : tuple"""
def dist ( p , a , b ) : return ( abs ( ( b [ 0 ] - a [ 0 ] ) * ( a [ 1 ] - p [ 1 ] ) - ( a [ 0 ] - p [ 0 ] ) * ( b [ 1 ] - a [ 1 ] ) ) / math . sqrt ( ( b [ 0 ] - a [ 0 ] ) ** 2 + ( b [ 1 ] - a [ 1 ] ) ** 2 ) ) points = [ ] for x in range ( min ( start [ 0 ] , end [ 0 ] ) , max ( start [ 0 ] , end [ 0 ] ) + 1 ) : ...
def calendars ( self ) : """Retrieves calendars for this month"""
today = datetime . today ( ) first_day , last_day = monthrange ( today . year , today . month ) from_dt = datetime ( today . year , today . month , first_day ) to_dt = datetime ( today . year , today . month , last_day ) params = dict ( self . params ) params . update ( { 'lang' : 'en-us' , 'usertz' : get_localzone ( )...
from math import pi def calculate_sphere_surface ( radius ) : """Function to compute the surface area of a sphere given its radius . Examples : > > > calculate _ sphere _ surface ( 10) 1256.6370614359173 > > > calculate _ sphere _ surface ( 15) 2827.4333882308138 > > > calculate _ sphere _ surface ( 20)...
sphere_surface = 4 * pi * radius ** 2 return sphere_surface
def set_allowed_domains ( self , allowed_domains ) : """Set the sequence of allowed domains , or None ."""
if allowed_domains is not None : allowed_domains = tuple ( allowed_domains ) self . _allowed_domains = allowed_domains
def get_best_match ( self , options , service_name , api_version = None ) : """Given a collection of possible service options , selects the best match . If no API version is provided , the path to the most recent API version will be returned . If an API version is provided & there is an exact match , the path...
if not options : msg = "No JSON files provided. Please check your " + "configuration/install." raise NoResourceJSONFound ( msg ) if api_version is None : # Give them the very latest option . best_version = max ( options . keys ( ) ) return options [ best_version ] [ 0 ] , best_version # They ' ve provid...
def google_nest_count ( self , style ) : """calculate the nesting count of google doc lists"""
nest_count = 0 if 'margin-left' in style : nest_count = int ( style [ 'margin-left' ] [ : - 2 ] ) / self . google_list_indent return nest_count
def uma_rp_get_rpt ( self , ticket , claim_token = None , claim_token_format = None , pct = None , rpt = None , scope = None , state = None ) : """Function to be used by a UMA Requesting Party to get RPT token . Parameters : * * * ticket ( str , REQUIRED ) : * * ticket * * * claim _ token ( str , OPTIONAL ) :...
params = { "oxd_id" : self . oxd_id , "ticket" : ticket } if claim_token : params [ "claim_token" ] = claim_token if claim_token_format : params [ "claim_token_format" ] = claim_token_format if pct : params [ "pct" ] = pct if rpt : params [ "rpt" ] = rpt if scope : params [ "scope" ] = scope if stat...
def instruction_BVS ( self , opcode , ea ) : """Tests the state of the V ( overflow ) bit and causes a branch if it is set . That is , branch if the twos complement result was invalid . When used after an operation on twos complement binary values , this instruction will branch if there was an overflow . so...
if self . V == 1 : # log . info ( " $ % x BVS branch to $ % x , because V = = 1 \ t | % s " % ( # self . program _ counter , ea , self . cfg . mem _ info . get _ shortest ( ea ) self . program_counter . set ( ea )
def view_shot ( self , shot ) : """View the given shot : param shot : the shot to view : type shot : : class : ` jukeboxcore . djadapter . models . Shot ` : returns : None : rtype : None : raises : None"""
log . debug ( 'Viewing shot %s' , shot . name ) self . cur_shot = None self . pages_tabw . setCurrentIndex ( 3 ) self . shot_name_le . setText ( shot . name ) self . shot_prj_le . setText ( shot . project . name ) self . shot_seq_le . setText ( shot . sequence . name ) self . shot_start_sb . setValue ( shot . startfram...
def run_from_argv ( self , argv ) : """Changes the option _ list to use the options from the wrapped command . Adds schema parameter to specify which schema will be used when executing the wrapped command ."""
# load the command object . try : app_name = get_commands ( ) [ argv [ 2 ] ] except KeyError : raise CommandError ( "Unknown command: %r" % argv [ 2 ] ) if isinstance ( app_name , BaseCommand ) : # if the command is already loaded , use it directly . klass = app_name else : klass = load_command_class ( ...
def _guess_package ( self , path ) : """Used in execute _ codegen to actually invoke the compiler with the proper arguments , and in _ sources _ to _ be _ generated to declare what the generated files will be ."""
supported_prefixes = ( 'com' , 'org' , 'net' , ) package = '' slash = path . rfind ( os . path . sep ) prefix_with_slash = max ( path . rfind ( os . path . join ( '' , prefix , '' ) ) for prefix in supported_prefixes ) if prefix_with_slash < 0 : package = path [ : slash ] elif prefix_with_slash >= 0 : package =...
def _conflict_bail ( VC_err , version ) : """Setuptools was imported prior to invocation , so it is unsafe to unload it . Bail out ."""
conflict_tmpl = textwrap . dedent ( """ The required version of setuptools (>={version}) is not available, and can't be installed while this script is running. Please install a more recent version first, using 'easy_install -U setuptools'. (Currently using {VC_err.args[0]!r}) ...
def set_alias ( alias , ** kwargs ) : """Set a path alias . Arguments : alias - - The alias specification entry - - The entry to alias it to category - - The category to alias it to url - - The external URL to alias it to"""
spec = alias . split ( ) path = spec [ 0 ] values = { ** kwargs , 'path' : path } if len ( spec ) > 1 : values [ 'template' ] = spec [ 1 ] record = model . PathAlias . get ( path = path ) if record : record . set ( ** values ) else : record = model . PathAlias ( ** values ) orm . commit ( ) return record
def iter_followers ( self , first_user_id = None ) : """获取所有的用户openid列表 详情请参考 https : / / mp . weixin . qq . com / wiki ? t = resource / res _ main & id = mp1421140840 : return : 返回一个迭代器 , 可以用for进行循环 , 得到openid 使用示例 : : from wechatpy import WeChatClient client = WeChatClient ( ' appid ' , ' secret ' ) ...
while True : follower_data = self . get_followers ( first_user_id ) first_user_id = follower_data [ "next_openid" ] # 微信有个bug ( 或者叫feature ) , 没有下一页 , 也返回next _ openid这个字段 # 所以要通过total _ count和data的长度比较判断 ( 比较麻烦 , 并且不稳定 ) # 或者获得结果前先判断data是否存在 if 'data' not in follower_data : return f...
def create_many ( self , records ) : """Create a list of new instances of the related model . : param records : instances attributes : type records : list : rtype : list"""
instances = [ ] for record in records : instances . append ( self . create ( ** record ) ) return instances
def exec_command ( self , command , bufsize = - 1 , check_status = True ) : """Execute a command on the SSH server while preserving underling agent forwarding and sudo privileges . https : / / github . com / paramiko / paramiko / blob / 1.8 / paramiko / client . py # L348 : param command : the command to exec...
channel = self . transport . open_session ( ) if self . forward_agent : AgentRequestHandler ( channel ) if self . sudoable : channel . get_pty ( ) channel . exec_command ( command ) if check_status and channel . recv_exit_status ( ) != 0 : raise RuntimeError ( "Command execution error: {}" . format ( comman...
def reduce_opacity ( img , opacity ) : """Returns an image with reduced opacity ."""
assert opacity >= 0 and opacity <= 1 if img . mode != 'RGBA' : img = img . convert ( 'RGBA' ) else : img = img . copy ( ) alpha = img . split ( ) [ 3 ] alpha = ImageEnhance . Brightness ( alpha ) . enhance ( opacity ) img . putalpha ( alpha ) return img
def quaternion_conjugate ( quaternion ) : """Return conjugate of quaternion . > > > q0 = random _ quaternion ( ) > > > q1 = quaternion _ conjugate ( q0) > > > q1[0 ] = = q0[0 ] and all ( q1[1 : ] = = - q0[1 : ] ) True"""
q = np . array ( quaternion , dtype = np . float64 , copy = True ) np . negative ( q [ 1 : ] , q [ 1 : ] ) return q
def get_master ( self , host , port , sentinel_port , sentinel_name ) : """: param host : Redis host to send request : param port : Redis port to send request : param sentinel _ port : sentinel _ port optional : param sentinel _ name : sentinel _ name optional : return : master ip and port"""
if sentinel_port and sentinel_name : master = Sentinel ( [ ( host , sentinel_port ) ] , socket_timeout = 1 ) . discover_master ( sentinel_name ) return master return host , port
def get_object_id ( self , datum ) : """Identifier of the role assignment ."""
# Role assignment doesn ' t have identifier so one will be created # from the identifier of scope , user and role . This will guaranty the # unicity . scope_id = "" if "project" in datum . scope : scope_id = datum . scope [ "project" ] [ "id" ] elif "domain" in datum . scope : scope_id = datum . scope [ "domain...
def warn ( filepath , expected ) : """Raise warning . Parameters filepath : path - like Given filepath . expected : string Expected file suffix ."""
filepath = pathlib . Path ( filepath ) message = "file {0} has type {1} (expected {2})" . format ( filepath , filepath . suffix , expected ) warnings . warn ( message , WrongFileTypeWarning )
def defgate ( self , name , matrix , parameters = None ) : """Define a new static gate . . . note : : The matrix elements along each axis are ordered by bitstring . For two qubits the order is ` ` 00 , 01 , 10 , 11 ` ` , where the the bits * * are ordered in reverse * * by the qubit index , i . e . , for qu...
return self . inst ( DefGate ( name , matrix , parameters ) )
def new ( self ) : # type : ( ) - > None '''Create a new Rock Ridge Child Link record . Parameters : None . Returns : Nothing .'''
if self . _initialized : raise pycdlibexception . PyCdlibInternalError ( 'CL record already initialized!' ) self . child_log_block_num = 0 # This gets set later self . _initialized = True
async def get_alarms ( ) : """Get alarms and timers from GH ."""
async with aiohttp . ClientSession ( ) as session : ghlocalapi = Alarms ( LOOP , session , IPADDRESS ) await ghlocalapi . get_alarms ( ) print ( "Alarms:" , ghlocalapi . alarms )
def _access_token ( self , request : Request = None , page_id : Text = '' ) : """Guess the access token for that specific request ."""
if not page_id : msg = request . message # type : FacebookMessage page_id = msg . get_page_id ( ) page = self . settings ( ) if page [ 'page_id' ] == page_id : return page [ 'page_token' ] raise PlatformOperationError ( 'Trying to get access token of the ' 'page "{}", which is not configured.' . format ...
def current_api_key ( ) : """Determines the API key for the current request . Returns : The ApiKey instance ."""
if app . config . get ( 'IGNORE_AUTH' ) : return models . ApiKey ( id = 'anonymous_superuser' , secret = '' , superuser = True ) ops = _get_api_key_ops ( ) api_key = ops . get ( ) logging . debug ( 'Authenticated as API key=%r' , api_key . id ) return api_key
def get_meter ( self , site , start , end , point_type = 'Green_Button_Meter' , var = "meter" , agg = 'MEAN' , window = '24h' , aligned = True , return_names = True ) : """Get meter data from MDAL . Parameters site : str Building name . start : str Start date - ' YYYY - MM - DDTHH : MM : SSZ ' end : str...
# Convert time to UTC start = self . convert_to_utc ( start ) end = self . convert_to_utc ( end ) request = self . compose_MDAL_dic ( point_type = point_type , site = site , start = start , end = end , var = var , agg = agg , window = window , aligned = aligned ) resp = self . m . query ( request ) if return_names : ...
def _makeini ( self , w , v ) : """C initializer string for a wire with a given value ."""
pieces = [ ] for n in range ( self . _limbs ( w ) ) : pieces . append ( hex ( v & ( ( 1 << 64 ) - 1 ) ) ) v >>= 64 return ',' . join ( pieces ) . join ( '{}' )
def save ( self , * args , ** kwargs ) : """call synchronizer " after _ external _ layer _ saved " method for any additional operation that must be executed after save"""
after_save = kwargs . pop ( 'after_save' , True ) super ( LayerExternal , self ) . save ( * args , ** kwargs ) # call after _ external _ layer _ saved method of synchronizer if after_save : try : synchronizer = self . synchronizer except ImproperlyConfigured : pass else : if synchron...
def get_blob ( self , repository_id , sha1 , project = None , download = None , file_name = None , resolve_lfs = None ) : """GetBlob . Get a single blob . : param str repository _ id : The name or ID of the repository . : param str sha1 : SHA1 hash of the file . You can get the SHA1 of a file using the " Git ...
route_values = { } if project is not None : route_values [ 'project' ] = self . _serialize . url ( 'project' , project , 'str' ) if repository_id is not None : route_values [ 'repositoryId' ] = self . _serialize . url ( 'repository_id' , repository_id , 'str' ) if sha1 is not None : route_values [ 'sha1' ] ...
def AddArguments ( cls , argument_group ) : """Adds command line arguments to an argument group . This function takes an argument parser or an argument group object and adds to it all the command line arguments this helper supports . Args : argument _ group ( argparse . _ ArgumentGroup | argparse . Argument...
argument_group . add_argument ( '--disable_zeromq' , '--disable-zeromq' , action = 'store_false' , dest = 'use_zeromq' , default = True , help = ( 'Disable queueing using ZeroMQ. A Multiprocessing queue will be ' 'used instead.' ) )
def find_day_by_offset ( year , month , offset ) : """Get the month day based on date and offset : param year : date year : type year : int : param month : date month : type month : int : param offset : offset in day to compute ( usually negative ) : type offset : int : return : day number in the mont...
( _ , days_in_month ) = calendar . monthrange ( year , month ) if offset >= 0 : return min ( offset , days_in_month ) return max ( 1 , days_in_month + offset + 1 )
def deserialize_from_http_generics ( cls , body_bytes , headers ) : # type : ( Optional [ Union [ AnyStr , IO ] ] , Mapping ) - > Any """Deserialize from HTTP response . Use bytes and headers to NOT use any requests / aiohttp or whatever specific implementation . Headers will tested for " content - type " """
# Try to use content - type from headers if available content_type = None if 'content-type' in headers : content_type = headers [ 'content-type' ] . split ( ";" ) [ 0 ] . strip ( ) . lower ( ) # Ouch , this server did not declare what it sent . . . # Let ' s guess it ' s JSON . . . # Also , since Autorest was consi...
def remove_id ( self , key ) : """Suppress acces with id = key"""
self . infos . pop ( key , "" ) new_l = [ a for a in self if not ( a . Id == key ) ] list . __init__ ( self , new_l )
def apply_host_template ( resource_root , name , cluster_name , host_ids , start_roles ) : """Apply a host template identified by name on the specified hosts and optionally start them . @ param resource _ root : The root Resource object . @ param name : Host template name . @ param cluster _ name : Cluster ...
host_refs = [ ] for host_id in host_ids : host_refs . append ( ApiHostRef ( resource_root , host_id ) ) params = { "startRoles" : start_roles } return call ( resource_root . post , APPLY_HOST_TEMPLATE_PATH % ( cluster_name , name ) , ApiCommand , data = host_refs , params = params , api_version = 3 )
def kill ( self , name ) : # type : ( str ) - > None """Kills the given component : param name : Name of the component to kill : raise ValueError : Invalid component name"""
if not name : raise ValueError ( "Name can't be None or empty" ) with self . __instances_lock : try : # Running instance stored_instance = self . __instances . pop ( name ) # Store the reference to the factory context factory_context = stored_instance . context . factory_context ...
def exit_interpreter ( self ) : """Exit interpreter"""
self . interpreter . exit_flag = True if self . multithreaded : self . interpreter . stdin_write . write ( to_binary_string ( '\n' ) ) self . interpreter . restore_stds ( )
def _runMainLoop ( self , rootJob ) : """Runs the main loop with the given job . : param toil . job . Job rootJob : The root job for the workflow . : rtype : Any"""
logProcessContext ( self . config ) with RealtimeLogger ( self . _batchSystem , level = self . options . logLevel if self . options . realTimeLogging else None ) : # FIXME : common should not import from leader from toil . leader import Leader return Leader ( config = self . config , batchSystem = self . _batch...
def classificationAccuracyVsNoise ( sp , inputVectors , noiseLevelList ) : """Evaluate whether the SP output is classifiable , with varying amount of noise @ param sp a spatial pooler instance @ param inputVectors ( list ) list of input SDRs @ param noiseLevelList ( list ) list of noise levels : return :"""
numInputVector , inputSize = inputVectors . shape if sp is None : targetOutputColumns = copy . deepcopy ( inputVectors ) else : columnNumber = np . prod ( sp . getColumnDimensions ( ) ) # calculate target output given the uncorrupted input vectors targetOutputColumns = np . zeros ( ( numInputVector , co...
def version ( family = 'ipv4' ) : '''Return version from iptables - - version CLI Example : . . code - block : : bash salt ' * ' iptables . version IPv6: salt ' * ' iptables . version family = ipv6'''
cmd = '{0} --version' . format ( _iptables_cmd ( family ) ) out = __salt__ [ 'cmd.run' ] ( cmd ) . split ( ) return out [ 1 ]
def hide ( input_image_file , img_enc , secret_message = None , secret_file = None , img_format = None , ) : """Hide a message ( string ) in an image ."""
from zlib import compress from base64 import b64encode if secret_file != None : with open ( secret_file , "r" ) as f : secret_message = f . read ( ) try : text = compress ( b64encode ( bytes ( secret_message , "utf-8" ) ) ) except : text = compress ( b64encode ( secret_message ) ) img = tools . open...
def delete_course ( self , courseid ) : """Erase all course data"""
# Wipes the course ( delete database ) self . wipe_course ( courseid ) # Deletes the course from the factory ( entire folder ) self . course_factory . delete_course ( courseid ) # Removes backup filepath = os . path . join ( self . backup_dir , courseid ) if os . path . exists ( os . path . dirname ( filepath ) ) : ...
def get_locale ( ) : '''Get the current system locale CLI Example : . . code - block : : bash salt ' * ' locale . get _ locale'''
ret = '' lc_ctl = salt . utils . systemd . booted ( __context__ ) # localectl on SLE12 is installed but the integration is still broken in latest SP3 due to # config is rewritten by by many % post installation hooks in the older packages . # If you use it - - you will break your config . This is not the case in SLE15 a...
def citingArticles ( self , uid , count = 100 , offset = 1 , editions = None , timeSpan = None , retrieveParameters = None ) : """The citingArticles operation finds citing articles for the article specified by unique identifier . You may specify only one identifier per request . Web of Science Core Collection (...
return self . _search . service . citingArticles ( databaseId = 'WOS' , uid = uid , editions = editions , timeSpan = timeSpan , queryLanguage = 'en' , retrieveParameters = ( retrieveParameters or self . make_retrieveParameters ( offset , count ) ) )
def get_access_information ( self , code , # pylint : disable = W0221 update_session = True ) : """Return the access information for an OAuth2 authorization grant . : param code : the code received in the request from the OAuth2 server : param update _ session : Update the current session with the retrieved t...
retval = super ( AuthenticatedReddit , self ) . get_access_information ( code ) if update_session : self . set_access_credentials ( ** retval ) return retval
def authors ( self ) : """A list of scopus _ api . _ ScopusAuthor objects ."""
authors = self . xml . find ( 'authors' , ns ) try : return [ _ScopusAuthor ( author ) for author in authors ] except TypeError : return None
def _generate_replacement ( interface_number , segment_number ) : """This will generate replacement string for { port0 } = > { port9} { segment0 } = > { segment9}"""
replacements = { } for i in range ( 0 , 9 ) : replacements [ "port" + str ( i ) ] = interface_number + i replacements [ "segment" + str ( i ) ] = segment_number + i return replacements
def GET_query ( self , req_hook , req_args ) : '''Generic GET query method'''
# GET request methods only require sessionTokens headers = { 'content-type' : 'application/json' , 'sessionToken' : self . __session__ } # HTTP GET query method using requests module try : if req_args is None : response = requests . get ( self . __url__ + req_hook , headers = headers , verify = True ) e...
def full_parent_name ( self ) : """Retrieves the fully qualified parent command name . This the base command name required to execute it . For example , in ` ` ? one two three ` ` the parent name would be ` ` one two ` ` ."""
entries = [ ] command = self while command . parent is not None : command = command . parent entries . append ( command . name ) return ' ' . join ( reversed ( entries ) )
def get_assignments ( self , gradebook_id = '' , simple = False , max_points = True , avg_stats = False , grading_stats = False ) : """Get assignments for a gradebook . Return list of assignments for a given gradebook , specified by a py : attribute : : gradebook _ id . You can control if additional parameter...
# These are parameters required for the remote API call , so # there aren ' t too many arguments # pylint : disable = too - many - arguments params = dict ( includeMaxPoints = json . dumps ( max_points ) , includeAvgStats = json . dumps ( avg_stats ) , includeGradingStats = json . dumps ( grading_stats ) ) assignments ...
def lonlat_to_healpix ( self , lon , lat , return_offsets = False ) : """Convert longitudes / latitudes to HEALPix indices ( optionally with offsets ) Parameters lon , lat : : class : ` ~ astropy . units . Quantity ` The longitude and latitude values as : class : ` ~ astropy . units . Quantity ` instances w...
return lonlat_to_healpix ( lon , lat , self . nside , return_offsets = return_offsets , order = self . order )
def restore ( self ) : """Restore signal handlers to their original settings ."""
signal . signal ( signal . SIGINT , self . original_sigint ) signal . signal ( signal . SIGTERM , self . original_sigterm ) if os . name == 'nt' : signal . signal ( signal . SIGBREAK , self . original_sigbreak )
def list_file ( self , commit , path , recursive = False ) : """Lists the files in a directory . Params : * commit : A tuple , string , or Commit object representing the commit . * path : The path to the directory . * recursive : If True , continue listing the files for sub - directories ."""
req = proto . ListFileRequest ( file = proto . File ( commit = commit_from ( commit ) , path = path ) ) res = self . stub . ListFile ( req , metadata = self . metadata ) file_infos = res . file_info if recursive : dirs = [ f for f in file_infos if f . file_type == proto . DIR ] files = [ f for f in file_infos i...
def make_payload ( base , method , params ) : """Build Betfair JSON - RPC payload . : param str base : Betfair base ( " Sports " or " Account " ) : param str method : Betfair endpoint : param dict params : Request parameters"""
payload = { 'jsonrpc' : '2.0' , 'method' : '{base}APING/v1.0/{method}' . format ( ** locals ( ) ) , 'params' : utils . serialize_dict ( params ) , 'id' : 1 , } return payload
def show_bokehjs ( bokehjs_action , develop = False ) : '''Print a useful report after setuptools output describing where and how BokehJS is installed . Args : bokehjs _ action ( str ) : one of ' built ' , ' installed ' , or ' packaged ' how ( or if ) BokehJS was installed into the python source tree deve...
print ( ) if develop : print ( "Installed Bokeh for DEVELOPMENT:" ) else : print ( "Installed Bokeh:" ) if bokehjs_action in [ 'built' , 'installed' ] : print ( " - using %s built BokehJS from bokehjs/build\n" % ( bright ( yellow ( "NEWLY" ) ) if bokehjs_action == 'built' else bright ( yellow ( "PREVIOUSLY...
def handle_error ( self , error = None ) : """Trap for TCPServer errors , otherwise continue ."""
if _debug : TCPServerActor . _debug ( "handle_error %r" , error ) # pass along to the director if error is not None : self . director . actor_error ( self , error ) else : TCPServer . handle_error ( self )
def main ( argv = None ) : """Entry point : param argv : Script arguments ( None for sys . argv ) : return : An exit code or None"""
# Parse arguments parser = argparse . ArgumentParser ( prog = "pelix.shell.console" , parents = [ make_common_parser ( ) ] , description = "Pelix Shell Console" , ) # Parse arguments args = parser . parse_args ( argv ) # Handle arguments init = handle_common_arguments ( args ) # Set the initial bundles bundles = [ "pel...
def write ( self , features = None , outfile = None , format = 0 , is_leaf_fn = None , format_root_node = False , dist_formatter = None , support_formatter = None , name_formatter = None ) : """Returns the newick representation of current node . Several arguments control the way in which extra data is shown for ...
nw = write_newick ( self , features = features , format = format , is_leaf_fn = is_leaf_fn , format_root_node = format_root_node , dist_formatter = dist_formatter , support_formatter = support_formatter , name_formatter = name_formatter ) if outfile is not None : with open ( outfile , "w" ) as OUT : OUT . w...
def wait ( rh ) : """Wait for the virtual machine to go into the specified state . Input : Request Handle with the following properties : function - ' POWERVM ' subfunction - ' WAIT ' userid - userid of the virtual machine parms [ ' desiredState ' ] - Desired state parms [ ' maxQueries ' ] - Maximum n...
rh . printSysLog ( "Enter powerVM.wait, userid: " + rh . userid ) if ( rh . parms [ 'desiredState' ] == 'off' or rh . parms [ 'desiredState' ] == 'on' ) : results = waitForVMState ( rh , rh . userid , rh . parms [ 'desiredState' ] , maxQueries = rh . parms [ 'maxQueries' ] , sleepSecs = rh . parms [ 'poll' ] ) else...
def filter ( self ) : # noqa A001 """Filter tag ' s children ."""
return [ tag for tag in self . get_contents ( self . tag ) if not self . is_navigable_string ( tag ) and self . match ( tag ) ]
def build_output_map ( protomap , get_tensor_by_name ) : """Builds a map of tensors from ` protomap ` using ` get _ tensor _ by _ name ` . Args : protomap : A proto map < string , TensorInfo > . get _ tensor _ by _ name : A lambda that receives a tensor name and returns a Tensor instance . Returns : A m...
def get_output_from_tensor_info ( tensor_info ) : encoding = tensor_info . WhichOneof ( "encoding" ) if encoding == "name" : return get_tensor_by_name ( tensor_info . name ) elif encoding == "coo_sparse" : return tf . SparseTensor ( get_tensor_by_name ( tensor_info . coo_sparse . indices_ten...
def verify_request ( self ) : """Verify LTI request : raises : LTIException if request validation failed"""
request = self . lti_kwargs [ 'app' ] . current_request if request . method == 'POST' : # Chalice expects JSON and does not nativly support forms data in # a post body . The below is copied from the parsing of query # strings as implimented in match _ route of Chalice local . py parsed_url = request . raw_body . de...
def update_font ( self ) : """Update font from Preferences"""
font = self . get_plugin_font ( ) for client in self . clients : client . set_font ( font )
def project_activity ( index , start , end ) : """Compute the metrics for the project activity section of the enriched git index . Returns a dictionary containing a " metric " key . This key contains the metrics for this section . : param index : index object : param start : start date to get the data fro...
results = { "metrics" : [ Commits ( index , start , end ) , Authors ( index , start , end ) ] } return results
def _update_event ( self , event_index , event_state , event_type , event_value , proc_list , proc_desc , peak_time ) : """Update an event in the list"""
if event_state == "OK" or event_state == "CAREFUL" : # Reset the automatic process sort key self . reset_process_sort ( ) # Set the end of the events endtime = time . mktime ( datetime . now ( ) . timetuple ( ) ) if endtime - self . events_list [ event_index ] [ 0 ] > peak_time : # If event is > peak _ ...
def update_cache ( self ) : """Reset the lal cache . This can be used to update the cache if the result may change due to more files being added to the filesystem , for example ."""
cache = locations_to_cache ( self . frame_src , latest = True ) stream = lalframe . FrStreamCacheOpen ( cache ) self . stream = stream
def get ( self , model , ** spec ) : """get a single model instance by handle : param model : model : param handle : instance handle : return :"""
handles = self . __find_handles ( model , ** spec ) if len ( handles ) > 1 : raise MultipleObjectsReturned ( ) if not handles : raise ObjectDoesNotExist ( ) return self . get_instance ( model , handles [ 0 ] )
def post ( self , request ) : """As per : rfc : ` 3.2 ` the token endpoint * only * supports POST requests ."""
if constants . ENFORCE_SECURE and not request . is_secure ( ) : return self . error_response ( { 'error' : 'invalid_request' , 'error_description' : _ ( "A secure connection is required." ) } ) if not 'grant_type' in request . POST : return self . error_response ( { 'error' : 'invalid_request' , 'error_descript...
def get_coordination_numbers ( d ) : """Helper method to get the coordination number of all sites in the final structure from a run . Args : Run dict generated by VaspToDbTaskDrone . Returns : Coordination numbers as a list of dict of [ { " site " : site _ dict , " coordination " : number } , . . . ] ."...
structure = Structure . from_dict ( d [ "output" ] [ "crystal" ] ) f = VoronoiNN ( ) cn = [ ] for i , s in enumerate ( structure . sites ) : try : n = f . get_cn ( structure , i ) number = int ( round ( n ) ) cn . append ( { "site" : s . as_dict ( ) , "coordination" : number } ) except E...
def parse ( line ) : """Parse accesslog line to map Python dictionary . Returned dictionary has following keys : - time : access time ( datetime ; naive ) - utcoffset : UTC offset of access time ( timedelta ) - host : remote IP address . - path : HTTP request path , this will be splitted from query . - ...
m = LOG_FORMAT . match ( line ) if m is None : return access = Access . _make ( m . groups ( ) ) entry = { 'host' : access . host , 'path' : access . path , 'query' : access . query , 'method' : access . method , 'protocol' : access . protocol , 'status' : int ( access . status ) } entry [ 'time' ] = datetime . dat...
def _compute_projection ( self , X , W ) : """Compute the LPP projection matrix Parameters X : array _ like , ( n _ samples , n _ features ) The input data W : array _ like or sparse matrix , ( n _ samples , n _ samples ) The precomputed adjacency matrix Returns P : ndarray , ( n _ features , self . n...
# TODO : check W input ; handle sparse case X = check_array ( X ) D = np . diag ( W . sum ( 1 ) ) L = D - W evals , evecs = eigh_robust ( np . dot ( X . T , np . dot ( L , X ) ) , np . dot ( X . T , np . dot ( D , X ) ) , eigvals = ( 0 , self . n_components - 1 ) ) return evecs
def _clean_required_args ( self , url , redirect_uri , client_type ) : """Validate and clean the command ' s arguments . Arguments : url ( str ) : Client ' s application URL . redirect _ uri ( str ) : Client application ' s OAuth2 callback URI . client _ type ( str ) : Client ' s type , indicating whether t...
# Validate URLs for url_to_validate in ( url , redirect_uri ) : try : URLValidator ( ) ( url_to_validate ) except ValidationError : raise CommandError ( "URLs provided are invalid. Please provide valid application and redirect URLs." ) # Validate and map client type to the appropriate django - o...
def initQApplication ( ) : """Initializes the QtWidgets . QApplication instance . Creates one if it doesn ' t exist . Sets Argos specific attributes , such as the OrganizationName , so that the application persistent settings are read / written to the correct settings file / winreg . It is therefore important...
# PyQtGraph recommends raster graphics system for OS - X . if 'darwin' in sys . platform : graphicsSystem = "raster" # raster , native or opengl os . environ . setdefault ( 'QT_GRAPHICSSYSTEM' , graphicsSystem ) logger . info ( "Setting QT_GRAPHICSSYSTEM to: {}" . format ( graphicsSystem ) ) app = QtWid...
def show_label ( self , text , size = None , color = None , font_desc = None ) : """display text . unless font _ desc is provided , will use system ' s default font"""
font_desc = pango . FontDescription ( font_desc or _font_desc ) if color : self . set_color ( color ) if size : font_desc . set_absolute_size ( size * pango . SCALE ) self . show_layout ( text , font_desc )
def _verify_service_agreement_signature ( self , did , agreement_id , service_definition_id , consumer_address , signature , ddo = None ) : """Verify service agreement signature . Verify that the given signature is truly signed by the ` consumer _ address ` and represents this did ' s service agreement . . : ...
if not ddo : ddo = self . _asset_resolver . resolve ( did ) service_agreement = ServiceAgreement . from_ddo ( service_definition_id , ddo ) agreement_hash = service_agreement . get_service_agreement_hash ( agreement_id , ddo . asset_id , consumer_address , Web3Provider . get_web3 ( ) . toChecksumAddress ( ddo . pro...
def bundle_visualization ( self , bundle_id , channel = None ) : '''Get the bundle visualization . @ param bundle _ id The ID of the bundle . @ param channel Optional channel name .'''
url = self . bundle_visualization_url ( bundle_id , channel = channel ) response = self . _get ( url ) return response . content
def remove_child ( self , child ) : """Remove a child widget from this widget . : param child : Object inheriting : class : ` BaseElement `"""
self . children . remove ( child ) child . parent = None if self . view and self . view . is_loaded : self . view . dispatch ( { 'name' : 'remove' , 'selector' : '#' + child . id } )
def pave_community ( self ) : """Usage : containment pave _ community"""
settings . project_config . path . mkdir ( ) settings . project_config . base . write_text ( self . context . base_text ) settings . project_config . os_packages . write_text ( "[]" ) settings . project_config . lang_packages . write_text ( "{}" )
def installed_packages ( self ) : """: return : list of installed packages"""
packages = [ ] CMDLINE = [ sys . executable , "-mpip" , "freeze" ] try : for package in subprocess . check_output ( CMDLINE ) . decode ( 'utf-8' ) . splitlines ( ) : for comparator in [ "==" , ">=" , "<=" , "<" , ">" ] : if comparator in package : # installed package names usually look like Pill...
def autofit ( self ) : """Return | False | if there is a ` ` < w : tblLayout > ` ` child with ` ` w : type ` ` attribute set to ` ` ' fixed ' ` ` . Otherwise return | True | ."""
tblLayout = self . tblLayout if tblLayout is None : return True return False if tblLayout . type == 'fixed' else True
def jd2dt ( jd ) : """Convert julian date to datetime"""
n = int ( round ( float ( jd ) ) ) a = n + 32044 b = ( 4 * a + 3 ) // 146097 c = a - ( 146097 * b ) // 4 d = ( 4 * c + 3 ) // 1461 e = c - ( 1461 * d ) // 4 m = ( 5 * e + 2 ) // 153 day = e + 1 - ( 153 * m + 2 ) // 5 month = m + 3 - 12 * ( m // 10 ) year = 100 * b + d - 4800 + m / 10 tfrac = 0.5 + float ( jd ) - n tfra...
def restore_snapshot ( self , si , logger , session , vm_uuid , resource_fullname , snapshot_name ) : """Restores a virtual machine to a snapshot : param vim . ServiceInstance si : py _ vmomi service instance : param logger : Logger : param session : CloudShellAPISession : type session : cloudshell _ api . ...
vm = self . pyvmomi_service . find_by_uuid ( si , vm_uuid ) logger . info ( "Revert snapshot" ) snapshot = SnapshotRestoreCommand . _get_snapshot ( vm = vm , snapshot_name = snapshot_name ) session . SetResourceLiveStatus ( resource_fullname , "Offline" , "Powered Off" ) task = snapshot . RevertToSnapshot_Task ( ) retu...
def get_next ( self ) : """Return the next set of objects in a list"""
url = self . _get_link ( 'next' ) resource = self . object_type . get_resource_class ( self . client ) resp = resource . perform_api_call ( resource . REST_READ , url ) return List ( resp , self . object_type , self . client )
async def update_from_devices ( self ) : """Retrieve a list of & devices and values ."""
res = await self . get_json ( URL_DEVICES . format ( self . _url ) ) if res : self . devices . update_devices ( res ) return True return False
def warm ( self , jittering_ratio = 0.2 ) : """Progressively load the previous snapshot during the day . Loading all the snapshots at once can takes a substantial amount of time . This method , if called periodically during the day will progressively load those snapshots one by one . Because many workers are ...
if self . snapshot_to_load == None : last_period = self . current_period - dt . timedelta ( days = self . expiration - 1 ) self . compute_refresh_period ( ) self . snapshot_to_load = [ ] base_filename = "%s/%s_%s_*.dat" % ( self . snapshot_path , self . name , self . expiration ) availables_snapshot...
def cast ( self , mapping ) : """Allocate the scene script a cast of personae for each of its entities . : param mapping : A dictionary of { Entity , Persona } : return : The SceneScript object ."""
# See ' citation ' method in # http : / / docutils . sourceforge . net / docutils / parsers / rst / states . py for c , p in mapping . items ( ) : self . doc . note_citation ( c ) self . doc . note_explicit_target ( c , c ) c . persona = p self . log . debug ( "{0} to be played by {1}" . format ( c [ "n...
def _remove_trustee ( self , device ) : '''Remove a trustee from the trust domain . : param device : MangementRoot object - - device to remove'''
trustee_name = get_device_info ( device ) . name name_object_map = get_device_names_to_objects ( self . devices ) delete_func = self . _get_delete_trustee_cmd for truster in self . domain : if trustee_name in self . domain [ truster ] and truster != trustee_name : truster_obj = name_object_map [ truster ] ...
def _convert_and_assert_per_example_weights_compatible ( input_ , per_example_weights , dtype ) : """Converts per _ example _ weights to a tensor and validates the shape ."""
per_example_weights = tf . convert_to_tensor ( per_example_weights , name = 'per_example_weights' , dtype = dtype ) if input_ . get_shape ( ) . ndims : expected_length = input_ . get_shape ( ) . dims [ 0 ] message = ( 'per_example_weights must have rank 1 and length %s, but was: %s' % ( expected_length , per_ex...
def _Connect ( host = None , port = None , user = None , password = None , database = None , client_key_path = None , client_cert_path = None , ca_cert_path = None ) : """Connect to MySQL and check if server fulfills requirements ."""
connection_args = _GetConnectionArgs ( host = host , port = port , user = user , password = password , database = database , client_key_path = client_key_path , client_cert_path = client_cert_path , ca_cert_path = ca_cert_path ) conn = MySQLdb . Connect ( ** connection_args ) with contextlib . closing ( conn . cursor (...
def load_config_file ( config_file : str ) -> HmipConfig : """Loads the config ini file . : raises a FileNotFoundError when the config file does not exist ."""
_config = configparser . ConfigParser ( ) with open ( config_file , "r" ) as fl : _config . read_file ( fl ) logging_filename = _config . get ( "LOGGING" , "FileName" , fallback = "hmip.log" ) if logging_filename == "None" : logging_filename = None _hmip_config = HmipConfig ( _config [ "AUTH" ] ...
def _collect_masters_map ( self , response ) : '''Collect masters map from the network . : return :'''
while True : try : data , addr = self . _socket . recvfrom ( 0x400 ) if data : if addr not in response : response [ addr ] = [ ] response [ addr ] . append ( data ) else : break except Exception as err : if not response : ...
def ok ( prompt = 'OK ' , loc = { } , glo = { } , cmd = "" ) : '''Invoke the peforth interpreter . An statement : peforth . ok ( prompt = ' OK ' , loc = locals ( ) , glo = globals ( ) , cmd = " " ) is like a breakpoint . The prompt indicates which breakpoint it is if there are many . Arguments loc ( locals ) ...
if loc or glo : vm . push ( ( loc , glo , prompt ) ) # parent ' s data while True : if cmd == "" : if vm . tick ( 'accept' ) and not vm . multiple : # Input can be single line ( default ) or vm . execute ( 'accept' ) # multiple lines . Press Ctrl - D to toggle cmd...
def getpreferredencoding ( ) : """Determine the proper output encoding for terminal rendering"""
# Borrowed from Invoke # ( see https : / / github . com / pyinvoke / invoke / blob / 93af29d / invoke / runners . py # L881) _encoding = locale . getpreferredencoding ( False ) if six . PY2 and not sys . platform == "win32" : _default_encoding = locale . getdefaultlocale ( ) [ 1 ] if _default_encoding is not No...
def binary_thin ( image , strel1 , strel2 ) : """Morphologically thin an image strel1 - the required values of the pixels in order to survive strel2 - at each pixel , the complement of strel1 if we care about the value"""
hit_or_miss = scind . binary_hit_or_miss ( image , strel1 , strel2 ) return np . logical_and ( image , np . logical_not ( hit_or_miss ) )
def read ( fname ) : """Return content of specified file"""
path = os . path . join ( SCRIPTDIR , fname ) if PY3 : f = open ( path , 'r' , encoding = 'utf8' ) else : f = open ( path , 'r' ) content = f . read ( ) f . close ( ) return content
def process_forever ( self , timeout = 0.2 ) : """Run an infinite loop , processing data from connections . This method repeatedly calls process _ once . Arguments : timeout - - Parameter to pass to process _ once ."""
# This loop should specifically * not * be mutex - locked . # Otherwise no other thread would ever be able to change # the shared state of a Reactor object running this function . log . debug ( "process_forever(timeout=%s)" , timeout ) one = functools . partial ( self . process_once , timeout = timeout ) consume ( infi...
def link_asset_content_key ( access_token , asset_id , encryptionkey_id , ams_redirected_rest_endpoint ) : '''Link Media Service Asset and Content Key . Args : access _ token ( str ) : A valid Azure authentication token . asset _ id ( str ) : A Media Service Asset ID . encryption _ id ( str ) : A Media Serv...
path = '/Assets' full_path = '' . join ( [ path , "('" , asset_id , "')" , "/$links/ContentKeys" ] ) full_path_encoded = urllib . parse . quote ( full_path , safe = '' ) endpoint = '' . join ( [ ams_rest_endpoint , full_path_encoded ] ) uri = '' . join ( [ ams_redirected_rest_endpoint , 'ContentKeys' , "('" , encryptio...
def link ( self , family : str , sample : str , analysis_type : str , files : List [ str ] ) : """Link FASTQ files for a sample ."""
root_dir = Path ( self . families_dir ) / family / analysis_type / sample / 'fastq' root_dir . mkdir ( parents = True , exist_ok = True ) for fastq_data in files : fastq_path = Path ( fastq_data [ 'path' ] ) fastq_name = self . name_file ( lane = fastq_data [ 'lane' ] , flowcell = fastq_data [ 'flowcell' ] , sa...