after_merge stringlengths 28 79.6k | before_merge stringlengths 20 79.6k | url stringlengths 38 71 | full_traceback stringlengths 43 922k | traceback_type stringclasses 555
values |
|---|---|---|---|---|
def perform_action(self, user, technique, target=None):
"""Do something with the thing: animated
:param user:
:param technique: Not a dict: a Technique or Item
:param target:
:returns:
"""
technique.advance_round()
result = technique.use(user, target)
try:
tools.load_soun... | def perform_action(self, user, technique, target=None):
"""Do something with the thing: animated
:param user:
:param technique: Not a dict: a Technique or Item
:param target:
:returns:
"""
technique.advance_round()
result = technique.use(user, target)
try:
tools.load_soun... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def open_technique_menu(self):
"""Open menus to choose a Technique to use
:return: None
"""
def choose_technique():
# open menu to choose technique
menu = self.game.push_state("Menu")
menu.shrink_to_items = True
# add techniques to the menu
for tech in self.mon... | def open_technique_menu(self):
"""Open menus to choose a Technique to use
:return: None
"""
def choose_technique():
# open menu to choose technique
menu = self.game.push_state("Menu")
menu.shrink_to_items = True
# add techniques to the menu
for tech in self.mon... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def choose_technique():
# open menu to choose technique
menu = self.game.push_state("Menu")
menu.shrink_to_items = True
# add techniques to the menu
for tech in self.monster.moves:
image = self.shadow_text(tech.name_trans)
item = MenuItem(image, None, None, tech)
menu.add(it... | def choose_technique():
# open menu to choose technique
menu = self.game.push_state("Menu")
menu.shrink_to_items = True
# add techniques to the menu
for tech in self.monster.moves:
image = self.shadow_text(tech.name)
item = MenuItem(image, tech.name, None, tech)
menu.add(ite... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def startup(self, **kwargs):
self.state = "normal"
# this sprite is used to display the item
# its also animated to pop out of the backpack
self.item_center = self.rect.width * 0.164, self.rect.height * 0.13
self.item_sprite = Sprite()
self.item_sprite.image = None
self.sprites.add(self.ite... | def startup(self, **kwargs):
self.state = "normal"
# this sprite is used to display the item
# its also animated to pop out of the backpack
self.item_center = self.rect.width * 0.164, self.rect.height * 0.13
self.item_sprite = Sprite()
self.item_sprite.image = None
self.sprites.add(self.ite... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def on_menu_selection(self, menu_item):
"""Called when player has selected something from the inventory
Currently, opens a new menu depending on the state context
:param menu_item:
:return:
"""
item = menu_item.game_object
state = self.determine_state_called_from()
if state in item.us... | def on_menu_selection(self, menu_item):
"""Called when player has selected something from the inventory
Currently, opens a new menu depending on the state context
:param menu_item:
:return:
"""
item = menu_item.game_object
state = self.determine_state_called_from()
if state in item.us... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def initialize_items(self):
"""Get all player inventory items and add them to menu
:return:
"""
for name, properties in self.game.player1.inventory.items():
obj = properties["item"]
image = self.shadow_text(obj.name_trans, bg=(128, 128, 128))
yield MenuItem(image, obj.name_trans... | def initialize_items(self):
"""Get all player inventory items and add them to menu
:return:
"""
for name, properties in self.game.player1.inventory.items():
obj = properties["item"]
image = self.shadow_text(obj.name, bg=(128, 128, 128))
yield MenuItem(image, obj.name, obj.descri... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def animate_open(self):
"""Animate the menu sliding in
:return:
"""
self.state = "opening" # required
# position the menu off screen. it will be slid into view with an animation
right, height = prepare.SCREEN_SIZE
# TODO: more robust API for sizing (kivy esque?)
# this is highly irr... | def animate_open(self):
"""Animate the menu sliding in
:return:
"""
self.state = "opening" # required
# position the menu off screen. it will be slid into view with an animation
right, height = prepare.SCREEN_SIZE
# TODO: more robust API for sizing (kivy esque?)
# TODO: after menu "... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def startup(self, **kwargs):
self.state = "normal"
# this sprite is used to display the item
# its also animated to pop out of the backpack
self.item_center = self.rect.width * 0.164, self.rect.height * 0.13
self.item_sprite = Sprite()
self.item_sprite.image = None
self.sprites.add(self.ite... | def startup(self, **kwargs):
self.state = "normal"
# this sprite is used to display the item
# its also animated to pop out of the backpack
self.item_center = self.rect.width * 0.164, self.rect.height * 0.13
self.item_sprite = Sprite()
self.item_sprite.image = None
self.sprites.add(self.ite... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def animate_open(self):
"""Animate the menu sliding in
:return:
"""
self.state = "opening" # required
# position the menu off screen. it will be slid into view with an animation
right, height = prepare.SCREEN_SIZE
# TODO: more robust API for sizing (kivy esque?)
# this is highly irr... | def animate_open(self):
"""Animate the menu sliding in
:return:
"""
self.state = "opening" # required
# position the menu off screen. it will be slid into view with an animation
right, height = prepare.SCREEN_SIZE
# TODO: more robust API for sizing (kivy esque?)
# TODO: after menu "... | https://github.com/Tuxemon/Tuxemon/issues/160 | Traceback (most recent call last):
File "./tuxemon.py", line 60, in <module>
main()
File "/tmp/Tuxemon/tuxemon/core/main.py", line 109, in main
control.main()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 512, in main
self.main_loop()
File "/tmp/Tuxemon/tuxemon/core/control.py", line 573, in main_loop
self.update(t... | KeyError |
def main():
args = _options.options.parse_args()
if args.help:
_options.options.print_help()
return
if args.version:
print(metadata.version("nox"), file=sys.stderr)
return
setup_logging(color=args.color, verbose=args.verbose)
# Execute the appropriate tasks.
e... | def main():
args = _options.options.parse_args()
if args.help:
_options.options.print_help()
return
if args.version:
dist = pkg_resources.get_distribution("nox")
print(dist.version, file=sys.stderr)
return
setup_logging(color=args.color, verbose=args.verbose)
... | https://github.com/theacodes/nox/issues/271 | nox --help
Traceback (most recent call last):
File "...\python38\lib\runpy.py", line 193, in _run_module_as_main
return _run_code(code, main_globals, None,
File "...\python38\lib\runpy.py", line 86, in _run_code
exec(code, run_globals)
File "...\AppData\Roaming\Python\Python38\Scripts\nox.exe\__main__.py", line 5, in <... | ModuleNotFoundError |
def __init__(self, shape, default=None):
"""
The basic shape class to be set in InputType.
Attribute:
shape: list of (int), symbolic values, RangeDim object
The valid shape of the input
default: tuple of int or None
The default shape that is used for initiating the model, and set i... | def __init__(self, shape, default=None):
"""
The basic shape class to be set in InputType.
Attribute:
shape: list of (int), symbolic values, RangeDim object
The valid shape of the input
default: tuple of int or None
The default shape that is used for initiating the model, and set i... | https://github.com/apple/coremltools/issues/877 | import coremltools as ct
shape = ct.Shape(shape=(-1,224,224,3), default=(1,224,224,3))
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.6/dist-packages/coremltools/converters/mil/input_types.py", line 300, in __init__
raise ValueError(msg.format(idx, s))
ValueError: D... | ValueError |
def _remove_internal_identity_nodes(nnssa):
"""
remove identity nodes that are not connected to the model outputs
"""
delete_count = 0
for fn_key in list(nnssa.functions.keys()):
f = nnssa.functions[fn_key]
for name in list(f.graph.keys()):
if name not in f.graph:
... | def _remove_internal_identity_nodes(nnssa):
"""
remove identity nodes that are not connected to the model outputs
"""
delete_count = 0
for fn_key in list(nnssa.functions.keys()):
f = nnssa.functions[fn_key]
keys = list(f.graph.keys())
for k in keys:
if k not in f.... | https://github.com/apple/coremltools/issues/623 | Converting pb model to .mlmodel......
0 assert nodes deleted
872 nodes deleted
36 nodes deleted
0 nodes deleted
[Op Fusion] fuse_bias_add() deleted 24 nodes.
77 identity nodes deleted
Traceback (most recent call last):
File "tf2coreml.py", line 198, in <module>
convertModel(model=_TRAIN_MODEL, ml_model=_ML_MODEL, pb_mo... | ValueError |
def check_connections(gd):
"""
Given a graph, checks that all
- inputs/outputs are symmetric
- control_inputs/control_outputs are symmetric
- The graph does not reference vertices outside of the graph
Takes a graph in "dict{str, ParsedNode}" form. Does not return,
asserts false on failur... | def check_connections(gd):
"""
Given a graph, checks that all
- inputs/outputs are symmetric
- control_inputs/control_outputs are symmetric
- The graph does not reference vertices outside of the graph
Takes a graph in "dict{str, ParsedNode}" form. Does not return,
asserts false on failur... | https://github.com/apple/coremltools/issues/554 | 0 assert nodes deleted
5 nodes deleted
0 nodes deleted
0 nodes deleted
[Op Fusion] fuse_bias_add() deleted 4 nodes.
1 identity nodes deleted
2 disconnected nodes deleted
---------------------------------------------------------------------------
AssertionError Traceback (most recent call last... | AssertionError |
def transform_nhwc_to_nchw(nnssa):
"""
Mark each one of the node with "NHWC", so that the conversion process
could avoid inserting unnecessary transpositions.
A node's format is "NHWC" if and only if:
(1) it is a conv or pooling or image_resize layer with "NHWC" data format
(2) it is a rank-pres... | def transform_nhwc_to_nchw(nnssa):
"""
Mark each one of the node with "NHWC", so that the conversion process
could avoid inserting unnecessary transpositions.
A node's format is "NHWC" if and only if:
(1) it is a conv or pooling or image_resize layer with "NHWC" data format
(2) it is a rank-pres... | https://github.com/apple/coremltools/issues/554 | 0 assert nodes deleted
5 nodes deleted
0 nodes deleted
0 nodes deleted
[Op Fusion] fuse_bias_add() deleted 4 nodes.
1 identity nodes deleted
2 disconnected nodes deleted
---------------------------------------------------------------------------
AssertionError Traceback (most recent call last... | AssertionError |
def fuse_batch_norm(ssa):
"""
A graph pass that match and fuses following op patterns into a single BatchNorm op.
Pattern 1:
[Const] [Const]
| |
V V
[...] --> [Mul] --> [Add] --> [...] to [...] --> [BatchNorm] --> [...]
Pattern 2:
... | def fuse_batch_norm(ssa):
"""
A graph pass that match and fuses following op patterns into a single BatchNorm op.
Pattern 1:
[Const] [Const]
| |
V V
[...] --> [Mul] --> [Add] --> [...] to [...] --> [BatchNorm] --> [...]
Pattern 2:
... | https://github.com/apple/coremltools/issues/554 | 0 assert nodes deleted
5 nodes deleted
0 nodes deleted
0 nodes deleted
[Op Fusion] fuse_bias_add() deleted 4 nodes.
1 identity nodes deleted
2 disconnected nodes deleted
---------------------------------------------------------------------------
AssertionError Traceback (most recent call last... | AssertionError |
def _merge_batch_norm(graph, nodes, pattern_id=1):
expected_num_nodes = 4
if pattern_id == 2:
expected_num_nodes = 6
elif pattern_id == 3:
expected_num_nodes = 8
assert len(nodes) == expected_num_nodes
current_node = graph[nodes[1].inputs[0]]
out_node = nodes[-1]
bn_outputs ... | def _merge_batch_norm(graph, nodes, pattern_id=1):
expected_num_nodes = 4
if pattern_id == 2:
expected_num_nodes = 6
elif pattern_id == 3:
expected_num_nodes = 8
assert len(nodes) == expected_num_nodes
current_node = graph[nodes[1].inputs[0]]
out_node = nodes[-1]
bn_outputs ... | https://github.com/apple/coremltools/issues/554 | 0 assert nodes deleted
5 nodes deleted
0 nodes deleted
0 nodes deleted
[Op Fusion] fuse_bias_add() deleted 4 nodes.
1 identity nodes deleted
2 disconnected nodes deleted
---------------------------------------------------------------------------
AssertionError Traceback (most recent call last... | AssertionError |
def _remove_output_identity_nodes(nnssa):
"""
remove identity nodes that ARE connected to the model outputs
"""
delete_count = 0
for fn_key in list(nnssa.functions.keys()):
f = nnssa.functions[fn_key]
keys = list(f.graph.keys())
for k in keys:
if k not in f.graph:... | def _remove_output_identity_nodes(nnssa):
"""
remove identity nodes that ARE connected to the model outputs
"""
delete_count = 0
for fn_key in list(nnssa.functions.keys()):
f = nnssa.functions[fn_key]
keys = list(f.graph.keys())
for k in keys:
if k not in f.graph:... | https://github.com/apple/coremltools/issues/554 | 0 assert nodes deleted
5 nodes deleted
0 nodes deleted
0 nodes deleted
[Op Fusion] fuse_bias_add() deleted 4 nodes.
1 identity nodes deleted
2 disconnected nodes deleted
---------------------------------------------------------------------------
AssertionError Traceback (most recent call last... | AssertionError |
def __init__(self, tfnode=None):
super(ParsedTFNode, self).__init__()
self.original_node = tfnode
if tfnode is not None:
from .parse import parse_attr
self.name = tfnode.name
if tfnode.op == "PlaceholderWithDefault":
self.op = "Placeholder"
else:
sel... | def __init__(self, tfnode=None):
ParsedNode.__init__(self)
self.original_node = tfnode
if tfnode is not None:
from .parse import parse_attr
self.name = tfnode.name
if tfnode.op == "PlaceholderWithDefault":
self.op = "Placeholder"
else:
self.op = tfnod... | https://github.com/apple/coremltools/issues/554 | 0 assert nodes deleted
5 nodes deleted
0 nodes deleted
0 nodes deleted
[Op Fusion] fuse_bias_add() deleted 4 nodes.
1 identity nodes deleted
2 disconnected nodes deleted
---------------------------------------------------------------------------
AssertionError Traceback (most recent call last... | AssertionError |
def _configure(self):
try:
self.store = storage.get_driver(self.conf)
self.index = indexer.get_driver(self.conf)
self.index.connect()
except Exception as e:
raise utils.Retry(e)
| def _configure(self):
self.store = storage.get_driver(self.conf)
self.index = indexer.get_driver(self.conf)
self.index.connect()
| https://github.com/gnocchixyz/gnocchi/issues/681 | 2018-01-25 00:19:57.033 621506 ERROR cotyledon [-] Unhandled exception
2018-01-25 00:19:57.033 621506 ERROR cotyledon Traceback (most recent call last):
2018-01-25 00:19:57.033 621506 ERROR cotyledon File "/usr/lib/python2.7/site-packages/cotyledon/__init__.py", line 52, in _exit_on_exception
2018-01-25 00:19:57.033 ... | SSLError |
def group_serie(self, granularity, start=0):
# NOTE(jd) Our whole serialization system is based on Epoch, and we
# store unsigned integer, so we can't store anything before Epoch.
# Sorry!
if not self.ts.empty and self.ts.index[0].value < 0:
raise BeforeEpochError(self.ts.index[0])
return G... | def group_serie(self, granularity, start=0):
# NOTE(jd) Our whole serialization system is based on Epoch, and we
# store unsigned integer, so we can't store anything before Epoch.
# Sorry!
if self.ts.index[0].value < 0:
raise BeforeEpochError(self.ts.index[0])
return GroupedTimeSeries(self.... | https://github.com/gnocchixyz/gnocchi/issues/69 | 2017-06-02 16:59:03.590093 mod_wsgi (pid=16031): Exception occurred processing WSGI script '/var/www/gnocchi/app.wsgi'.
2017-06-02 16:59:03.590234 Traceback (most recent call last):
2017-06-02 16:59:03.590304 File "/usr/local/lib/python2.7/dist-packages/webob/dec.py", line 131, in __call__
2017-06-02 16:59:03.590391 ... | IndexError |
def group_serie(self, granularity, start=None):
# NOTE(jd) Our whole serialization system is based on Epoch, and we
# store unsigned integer, so we can't store anything before Epoch.
# Sorry!
if not self.ts.empty and self.ts.index[0].value < 0:
raise BeforeEpochError(self.ts.index[0])
return... | def group_serie(self, granularity, start=None):
# NOTE(jd) Our whole serialization system is based on Epoch, and we
# store unsigned integer, so we can't store anything before Epoch.
# Sorry!
if self.ts.index[0].value < 0:
raise BeforeEpochError(self.ts.index[0])
return self.ts[start:].group... | https://github.com/gnocchixyz/gnocchi/issues/69 | 2017-06-02 16:59:03.590093 mod_wsgi (pid=16031): Exception occurred processing WSGI script '/var/www/gnocchi/app.wsgi'.
2017-06-02 16:59:03.590234 Traceback (most recent call last):
2017-06-02 16:59:03.590304 File "/usr/local/lib/python2.7/dist-packages/webob/dec.py", line 131, in __call__
2017-06-02 16:59:03.590391 ... | IndexError |
def __init__(self, granularity=None, points=None, timespan=None):
if granularity is not None and points is not None and timespan is not None:
if timespan != granularity * points:
raise ValueError("timespan ≠ granularity × points")
if granularity is not None and granularity <= 0:
rai... | def __init__(self, granularity=None, points=None, timespan=None):
if granularity is not None and points is not None and timespan is not None:
if timespan != granularity * points:
raise ValueError("timespan ≠ granularity × points")
if granularity is not None and granularity <= 0:
rai... | https://github.com/gnocchixyz/gnocchi/issues/40 | Traceback (most recent call last):
File "/usr/lib64/python2.7/wsgiref/handlers.py", line 85, in run
self.result = application(self.environ, self.start_response)
File "/usr/lib/python2.7/site-packages/webob/dec.py", line 130, in __call__
resp = self.call_func(req, *args, **self.kwargs)
File "/usr/lib/python2.7/site-pack... | ValueError |
def user_run_dir(self):
# Try to ensure that (/var)/run/user/$(id -u) exists so that
# `gpgconf --create-socketdir` can be run later.
#
# NOTE(opadron): This action helps prevent a large class of
# "file-name-too-long" errors in gpg.
try:
has_suitable_gpgconf = bool(GpgC... | def user_run_dir(self):
# Try to ensure that (/var)/run/user/$(id -u) exists so that
# `gpgconf --create-socketdir` can be run later.
#
# NOTE(opadron): This action helps prevent a large class of
# "file-name-too-long" errors in gpg.
try:
has_suitable_gpgconf = bool(_Gpg... | https://github.com/spack/spack/issues/20585 | $> spack -d gpg trust e4s.pub
==> [2020-12-28-17:57:13.255469] Imported gpg from built-in commands
==> [2020-12-28-17:57:13.257931] Imported gpg from built-in commands
==> [2020-12-28-17:57:13.258679] '/usr/bin/gpgconf' '--version'
==> [2020-12-28-17:57:13.260456] '/usr/bin/gpgconf' '--dry-run' '--create-socketdir'
gpg... | FileNotFoundError |
def verify_executables(self):
"""Raise an error if any of the compiler executables is not valid.
This method confirms that for all of the compilers (cc, cxx, f77, fc)
that have paths, those paths exist and are executable by the current
user.
Raises a CompilerAccessError if any of the non-null paths... | def verify_executables(self):
"""Raise an error if any of the compiler executables is not valid.
This method confirms that for all of the compilers (cc, cxx, f77, fc)
that have paths, those paths exist and are executable by the current
user.
Raises a CompilerAccessError if any of the non-null paths... | https://github.com/spack/spack/issues/17301 | $> spack install zlib%gcc@8.3.0 arch=cray-cnl7-haswell
...
==> Error: Failed to install zlib due to ChildError: CompilerAccessError: Compiler 'gcc@8.3.0' has executables that are missing or are not executable: ['cc', 'CC', 'ftn', 'ftn']
/global/u1/l/lpeyrala/spack-greg-test/lib/spack/spack/build_environment.py:854, in ... | spack.compiler.CompilerAccessError |
def is_activated(self, view):
"""Return True if package is activated."""
if not self.is_extension:
raise ValueError("is_activated called on package that is not an extension.")
if self.extendee_spec.package.installed_upstream:
# If this extends an upstream package, it cannot be activated for
... | def is_activated(self, view):
"""Return True if package is activated."""
if not self.is_extension:
raise ValueError("is_activated called on package that is not an extension.")
extensions_layout = view.extensions_layout
exts = extensions_layout.extension_map(self.extendee_spec)
return (self.n... | https://github.com/spack/spack/issues/15966 | ==> [2020-04-09-10:26:40.615561, 133285] WRITE LOCK (scons): /dcsrsoft/sandbox/eroche/meleze/opt/spack/.spack-db/prefix_lock[2450758027729552401:1] [Releasing]
==> [2020-04-09-10:26:40.615767, 133285] WRITE LOCK (scons): /dcsrsoft/sandbox/eroche/meleze/opt/spack/.spack-db/prefix_lock[2450758027729552401:1] [Released at... | PermissionError |
def get_package_dir_permissions(spec):
"""Return the permissions configured for the spec.
Include the GID bit if group permissions are on. This makes the group
attribute sticky for the directory. Package-specific settings take
precedent over settings for ``all``"""
perms = get_package_permissions(s... | def get_package_dir_permissions(spec):
"""Return the permissions configured for the spec.
Include the GID bit if group permissions are on. This makes the group
attribute sticky for the directory. Package-specific settings take
precedent over settings for ``all``"""
perms = get_package_permissions(s... | https://github.com/spack/spack/issues/14425 | lib/spack/spack/cmd/__init__.py:102 ==> [2020-01-08-18:01:06.241182] Imported install from built-in commands
lib/spack/spack/config.py:706 ==> [2020-01-08-18:01:06.247268] Reading config file /afs/cern.ch/work/r/razumov/spack_vanilla/etc/spack/defaults/config.yaml
lib/spack/spack/cmd/__init__.py:102 ==> [2020-01-08-18:... | PermissionError |
def replace_directory_transaction(directory_name, tmp_root=None):
"""Moves a directory to a temporary space. If the operations executed
within the context manager don't raise an exception, the directory is
deleted. If there is an exception, the move is undone.
Args:
directory_name (path): absol... | def replace_directory_transaction(directory_name, tmp_root=None):
"""Moves a directory to a temporary space. If the operations executed
within the context manager don't raise an exception, the directory is
deleted. If there is an exception, the move is undone.
Args:
directory_name (path): absol... | https://github.com/spack/spack/issues/15620 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 770, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 67... | KeyError |
def _is_background_tty(stream):
"""True if the stream is a tty and calling process is in the background."""
return stream.isatty() and os.getpgrp() != os.tcgetpgrp(stream.fileno())
| def _is_background_tty():
"""Return True iff this process is backgrounded and stdout is a tty"""
if sys.stdout.isatty():
return os.getpgrp() != os.tcgetpgrp(sys.stdout.fileno())
return False # not writing to tty, not background
| https://github.com/spack/spack/issues/15620 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 770, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 67... | KeyError |
def __enter__(self):
if self._active:
raise RuntimeError("Can't re-enter the same log_output!")
if self.file_like is None:
raise RuntimeError("file argument must be set by either __init__ or __call__")
# set up a stream for the daemon to write to
self.close_log_in_parent = True
sel... | def __enter__(self):
if self._active:
raise RuntimeError("Can't re-enter the same log_output!")
if self.file_like is None:
raise RuntimeError("file argument must be set by either __init__ or __call__")
# set up a stream for the daemon to write to
self.close_log_in_parent = True
sel... | https://github.com/spack/spack/issues/15620 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 770, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 67... | KeyError |
def __exit__(self, exc_type, exc_val, exc_tb):
# Flush any buffered output to the logger daemon.
sys.stdout.flush()
sys.stderr.flush()
# restore previous output settings, either the low-level way or
# the python way
if self.use_fds:
os.dup2(self._saved_stdout, sys.stdout.fileno())
... | def __exit__(self, exc_type, exc_val, exc_tb):
# Flush any buffered output to the logger daemon.
sys.stdout.flush()
sys.stderr.flush()
# restore previous output settings, either the low-level way or
# the python way
if self.use_fds:
os.dup2(self._saved_stdout, sys.stdout.fileno())
... | https://github.com/spack/spack/issues/15620 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 770, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 67... | KeyError |
def force_echo(self):
"""Context manager to force local echo, even if echo is off."""
if not self._active:
raise RuntimeError("Can't call force_echo() outside log_output region!")
# This uses the xon/xoff to highlight regions to be echoed in the
# output. We us these control characters rather t... | def force_echo(self):
"""Context manager to force local echo, even if echo is off."""
if not self._active:
raise RuntimeError("Can't call force_echo() outside log_output region!")
# This uses the xon/xoff to highlight regions to be echoed in the
# output. We us these control characters rather t... | https://github.com/spack/spack/issues/15620 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 770, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 67... | KeyError |
def _writer_daemon(stdin, read_fd, write_fd, echo, log_file, control_pipe):
"""Daemon used by ``log_output`` to write to a log file and to ``stdout``.
The daemon receives output from the parent process and writes it both
to a log and, optionally, to ``stdout``. The relationship looks like
this::
... | def _writer_daemon(self, stdin):
"""Daemon that writes output to the log file and stdout."""
# Use line buffering (3rd param = 1) since Python 3 has a bug
# that prevents unbuffered text I/O.
in_pipe = os.fdopen(self.read_fd, "r", 1)
os.close(self.write_fd)
echo = self.echo # initial echo sett... | https://github.com/spack/spack/issues/15620 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 770, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 67... | KeyError |
def _default_target_from_env(self):
"""Set and return the default CrayPE target loaded in a clean login
session.
A bash subshell is launched with a wiped environment and the list of
loaded modules is parsed for the first acceptable CrayPE target.
"""
# env -i /bin/bash -lc echo $CRAY_CPU_TARGET... | def _default_target_from_env(self):
"""Set and return the default CrayPE target loaded in a clean login
session.
A bash subshell is launched with a wiped environment and the list of
loaded modules is parsed for the first acceptable CrayPE target.
"""
# env -i /bin/bash -lc echo $CRAY_CPU_TARGET... | https://github.com/spack/spack/issues/15620 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 770, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 67... | KeyError |
def _satisfies_target(self, other_target, strict):
self_target = self.target
need_to_check = (
bool(other_target)
if strict or self.concrete
else bool(other_target and self_target)
)
# If there's no need to check we are fine
if not need_to_check:
return True
# ... | def _satisfies_target(self, other_target, strict):
self_target = self.target
need_to_check = (
bool(other_target)
if strict or self.concrete
else bool(other_target and self_target)
)
# If there's no need to check we are fine
if not need_to_check:
return True
fo... | https://github.com/spack/spack/issues/15306 | Traceback (most recent call last):
File "/root/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/root/spack/lib/spack/spack/main.py", line 763, in main
return _invoke_command(command, parser, args, unknown)
File "/root/spack/lib/spack/spack/main.py", line 488, in _invoke_command
return_val = com... | AttributeError |
def add_default_view_to_shell(self, shell):
env_mod = spack.util.environment.EnvironmentModifications()
if default_view_name not in self.views:
# No default view to add to shell
return env_mod.shell_modifications(shell)
env_mod.extend(self.unconditional_environment_modifications(self.defau... | def add_default_view_to_shell(self, shell):
env_mod = spack.util.environment.EnvironmentModifications()
if default_view_name not in self.views:
# No default view to add to shell
return env_mod.shell_modifications(shell)
env_mod.extend(self.unconditional_environment_modifications(self.defau... | https://github.com/spack/spack/issues/13509 | Traceback (most recent call last):
File "./atdm-spack/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/home/rabartl/Spack.base4/atdm-spack/spack/lib/spack/spack/main.py", line 653, in main
ev.activate(env, args.use_env_repo)
File "/home/rabartl/Spack.base4/atdm-spack/spack/lib/spack/spack/envir... | RuntimeError |
def rm_default_view_from_shell(self, shell):
env_mod = spack.util.environment.EnvironmentModifications()
if default_view_name not in self.views:
# No default view to add to shell
return env_mod.shell_modifications(shell)
env_mod.extend(
self.unconditional_environment_modifications(... | def rm_default_view_from_shell(self, shell):
env_mod = spack.util.environment.EnvironmentModifications()
if default_view_name not in self.views:
# No default view to add to shell
return env_mod.shell_modifications(shell)
env_mod.extend(
self.unconditional_environment_modifications(... | https://github.com/spack/spack/issues/13509 | Traceback (most recent call last):
File "./atdm-spack/spack/bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/home/rabartl/Spack.base4/atdm-spack/spack/lib/spack/spack/main.py", line 653, in main
ev.activate(env, args.use_env_repo)
File "/home/rabartl/Spack.base4/atdm-spack/spack/lib/spack/spack/envir... | RuntimeError |
def install(self, spec, prefix):
options = [
"--with-ssl=0",
"--download-c2html=0",
"--download-sowing=0",
"--download-hwloc=0",
"CFLAGS=%s" % " ".join(spec.compiler_flags["cflags"]),
"FFLAGS=%s" % " ".join(spec.compiler_flags["fflags"]),
"CXXFLAGS=%s" % " ".j... | def install(self, spec, prefix):
options = [
"--with-ssl=0",
"--download-c2html=0",
"--download-sowing=0",
"--download-hwloc=0",
"CFLAGS=%s" % " ".join(spec.compiler_flags["cflags"]),
"FFLAGS=%s" % " ".join(spec.compiler_flags["fflags"]),
"CXXFLAGS=%s" % " ".j... | https://github.com/spack/spack/issues/10585 | hron@r0d0$ python
Python 3.6.5 (default, Feb 9 2019, 12:35:34)
[GCC 7.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
import sys
import petsc4py
petsc4py.init(sys.argv)
import matplotlib.pyplot as plt
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr... | ImportError |
def __init__(self, name, *args, **kwargs):
# If the user provided `--name py-numpy`, don't rename it py-py-numpy
if not name.startswith("py-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to py-{0}".format(name))
name = "py-{0}".format(... | def __init__(self, name, *args):
# If the user provided `--name py-numpy`, don't rename it py-py-numpy
if not name.startswith("py-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to py-{0}".format(name))
name = "py-{0}".format(name)
... | https://github.com/spack/spack/issues/12529 | $ spack -d create https://pypi.io/packages/source/P/PyJWT/PyJWT-1.7.1.tar.gz
==> [2019-08-22-15:47:19.578845] Imported create from built-in commands
==> [2019-08-22-15:47:19.581250] Imported create from built-in commands
==> [2019-08-22-15:47:19.779743] Reading config file /disk/home/sinan/Downloads/spack/etc/spack/def... | TypeError |
def __init__(self, name, *args, **kwargs):
# If the user provided `--name r-rcpp`, don't rename it r-r-rcpp
if not name.startswith("r-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to r-{0}".format(name))
name = "r-{0}".format(name)
... | def __init__(self, name, *args):
# If the user provided `--name r-rcpp`, don't rename it r-r-rcpp
if not name.startswith("r-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to r-{0}".format(name))
name = "r-{0}".format(name)
super(R... | https://github.com/spack/spack/issues/12529 | $ spack -d create https://pypi.io/packages/source/P/PyJWT/PyJWT-1.7.1.tar.gz
==> [2019-08-22-15:47:19.578845] Imported create from built-in commands
==> [2019-08-22-15:47:19.581250] Imported create from built-in commands
==> [2019-08-22-15:47:19.779743] Reading config file /disk/home/sinan/Downloads/spack/etc/spack/def... | TypeError |
def __init__(self, name, *args, **kwargs):
# If the user provided `--name perl-cpp`, don't rename it perl-perl-cpp
if not name.startswith("perl-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to perl-{0}".format(name))
name = "perl-{0}"... | def __init__(self, name, *args):
# If the user provided `--name perl-cpp`, don't rename it perl-perl-cpp
if not name.startswith("perl-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to perl-{0}".format(name))
name = "perl-{0}".format(na... | https://github.com/spack/spack/issues/12529 | $ spack -d create https://pypi.io/packages/source/P/PyJWT/PyJWT-1.7.1.tar.gz
==> [2019-08-22-15:47:19.578845] Imported create from built-in commands
==> [2019-08-22-15:47:19.581250] Imported create from built-in commands
==> [2019-08-22-15:47:19.779743] Reading config file /disk/home/sinan/Downloads/spack/etc/spack/def... | TypeError |
def __init__(self, name, *args, **kwargs):
# If the user provided `--name octave-splines`, don't rename it
# octave-octave-splines
if not name.startswith("octave-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to octave-{0}".format(name)) ... | def __init__(self, name, *args):
# If the user provided `--name octave-splines`, don't rename it
# octave-octave-splines
if not name.startswith("octave-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to octave-{0}".format(name)) # noqa
... | https://github.com/spack/spack/issues/12529 | $ spack -d create https://pypi.io/packages/source/P/PyJWT/PyJWT-1.7.1.tar.gz
==> [2019-08-22-15:47:19.578845] Imported create from built-in commands
==> [2019-08-22-15:47:19.581250] Imported create from built-in commands
==> [2019-08-22-15:47:19.779743] Reading config file /disk/home/sinan/Downloads/spack/etc/spack/def... | TypeError |
def __init__(self, name, *args, **kwargs):
# If the user provided `--name py-pyqt4`, don't rename it py-py-pyqt4
if not name.startswith("py-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to py-{0}".format(name))
name = "py-{0}".format(... | def __init__(self, name, *args):
# If the user provided `--name py-pyqt4`, don't rename it py-py-pyqt4
if not name.startswith("py-"):
# Make it more obvious that we are renaming the package
tty.msg("Changing package name from {0} to py-{0}".format(name))
name = "py-{0}".format(name)
... | https://github.com/spack/spack/issues/12529 | $ spack -d create https://pypi.io/packages/source/P/PyJWT/PyJWT-1.7.1.tar.gz
==> [2019-08-22-15:47:19.578845] Imported create from built-in commands
==> [2019-08-22-15:47:19.581250] Imported create from built-in commands
==> [2019-08-22-15:47:19.779743] Reading config file /disk/home/sinan/Downloads/spack/etc/spack/def... | TypeError |
def read_cle_release_file():
"""Read the CLE release file and return a dict with its attributes.
This file is present on newer versions of Cray.
The release file looks something like this::
RELEASE=6.0.UP07
BUILD=6.0.7424
...
The dictionary we produce looks like this::
... | def read_cle_release_file():
"""Read the CLE release file and return a dict with its attributes.
The release file looks something like this::
RELEASE=6.0.UP07
BUILD=6.0.7424
...
The dictionary we produce looks like this::
{
"RELEASE": "6.0.UP07",
"BUIL... | https://github.com/spack/spack/issues/12187 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 48, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 704, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 62... | IOError |
def _detect_crayos_version(cls):
if os.path.isfile(_cle_release_file):
release_attrs = read_cle_release_file()
v = spack.version.Version(release_attrs["RELEASE"])
return v[0]
elif os.path.isfile(_clerelease_file):
v = read_clerelease_file()
return spack.version.Version(v)... | def _detect_crayos_version(cls):
release_attrs = read_cle_release_file()
v = spack.version.Version(release_attrs["RELEASE"])
return v[0]
| https://github.com/spack/spack/issues/12187 | Traceback (most recent call last):
File "/u/sciteam/stewart1/spack/bin/spack", line 48, in <module>
sys.exit(spack.main.main())
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/main.py", line 704, in main
if spack.config.get('config:debug'):
File "/mnt/a/u/sciteam/stewart1/spack/lib/spack/spack/config.py", line 62... | IOError |
def setup_dependent_package(self, module, dependent_spec):
"""Called before perl modules' install() methods.
In most cases, extensions will only need to have one line:
perl('Makefile.PL','INSTALL_BASE=%s' % self.prefix)
"""
# If system perl is used through packages.yaml
# there cannot be extens... | def setup_dependent_package(self, module, dependent_spec):
"""Called before perl modules' install() methods.
In most cases, extensions will only need to have one line:
perl('Makefile.PL','INSTALL_BASE=%s' % self.prefix)
"""
# perl extension builds can have a global perl executable function
modu... | https://github.com/spack/spack/issues/11033 | ==> [2019-03-28-09:45:40.882685] Error: RuntimeError: Unable to locate perl command in None/bin
/scratch/gartung/work/spack/var/spack/repos/builtin/packages/perl/package.py:194, in setup_dependent_package:
191 """
192
193 # perl extension builds can have a global perl executable function
>> 194 ... | RuntimeError |
def _read_from_file(self, stream, format="json"):
"""
Fill database from file, do not maintain old data
Translate the spec portions from node-dict form to spec form
Does not do any locking.
"""
if format.lower() == "json":
load = sjson.load
elif format.lower() == "yaml":
loa... | def _read_from_file(self, stream, format="json"):
"""
Fill database from file, do not maintain old data
Translate the spec portions from node-dict form to spec form
Does not do any locking.
"""
if format.lower() == "json":
load = sjson.load
elif format.lower() == "yaml":
loa... | https://github.com/spack/spack/issues/2911 | Traceback (most recent call last):
File "/soft/spack-0.10.0/bin/spack", line 212, in <module>
main(sys.argv)
File "/soft/spack-0.10.0/bin/spack", line 208, in main
_main(args, unknown)
File "/soft/spack-0.10.0/bin/spack", line 174, in _main
return_val = command(parser, args)
File "/blues/gpfs/home/software/spack-0.10.0... | ValueError |
def _read_from_file(self, stream, format="json"):
"""
Fill database from file, do not maintain old data
Translate the spec portions from node-dict form to spec form
Does not do any locking.
"""
if format.lower() == "json":
load = sjson.load
elif format.lower() == "yaml":
loa... | def _read_from_file(self, stream, format="json"):
"""
Fill database from file, do not maintain old data
Translate the spec portions from node-dict form to spec form
Does not do any locking.
"""
if format.lower() == "json":
load = sjson.load
elif format.lower() == "yaml":
loa... | https://github.com/spack/spack/issues/2911 | Traceback (most recent call last):
File "/soft/spack-0.10.0/bin/spack", line 212, in <module>
main(sys.argv)
File "/soft/spack-0.10.0/bin/spack", line 208, in main
_main(args, unknown)
File "/soft/spack-0.10.0/bin/spack", line 174, in _main
return_val = command(parser, args)
File "/blues/gpfs/home/software/spack-0.10.0... | ValueError |
def setup_parser(subparser):
subparser.add_argument(
"--only",
default="package,dependencies",
dest="things_to_install",
choices=["package", "dependencies"],
help="""select the mode of installation.
the default is to install the package along with all its dependencies.
altern... | def setup_parser(subparser):
subparser.add_argument(
"--only",
default="package,dependencies",
dest="things_to_install",
choices=["package", "dependencies"],
help="""select the mode of installation.
the default is to install the package along with all its dependencies.
altern... | https://github.com/spack/spack/issues/2794 | amklinv@edison10:~/edison/spack/bin> ./spack -vd install xsdk arch=cray-CNL-ivybridge
==> Reading config file /global/u1/a/amklinv/edison/spack/etc/spack/defaults/packages.yaml
==> Reading config file /global/homes/a/amklinv/.spack/cray/packages.yaml
==> READ LOCK: /global/homes/a/amklinv/.spack/cache/providers/.builti... | KeyError |
def install(parser, args, **kwargs):
if not args.package:
tty.die("install requires at least one package argument")
if args.jobs is not None:
if args.jobs <= 0:
tty.die("The -j option must be a positive integer!")
if args.no_checksum:
spack.do_checksum = False # TODO: ... | def install(parser, args, **kwargs):
if not args.package:
tty.die("install requires at least one package argument")
if args.jobs is not None:
if args.jobs <= 0:
tty.die("The -j option must be a positive integer!")
if args.no_checksum:
spack.do_checksum = False # TODO: ... | https://github.com/spack/spack/issues/2794 | amklinv@edison10:~/edison/spack/bin> ./spack -vd install xsdk arch=cray-CNL-ivybridge
==> Reading config file /global/u1/a/amklinv/edison/spack/etc/spack/defaults/packages.yaml
==> Reading config file /global/homes/a/amklinv/.spack/cray/packages.yaml
==> READ LOCK: /global/homes/a/amklinv/.spack/cache/providers/.builti... | KeyError |
def _read(self):
"""Re-read Database from the data in the set location.
This does no locking, with one exception: it will automatically
migrate an index.yaml to an index.json if possible. This requires
taking a write lock.
"""
if os.path.isfile(self._index_path):
# Read from JSON file ... | def _read(self):
"""Re-read Database from the data in the set location.
This does no locking, with one exception: it will automatically
migrate an index.yaml to an index.json if possible. This requires
taking a write lock.
"""
if os.path.isfile(self._index_path):
# Read from JSON file ... | https://github.com/spack/spack/issues/2794 | amklinv@edison10:~/edison/spack/bin> ./spack -vd install xsdk arch=cray-CNL-ivybridge
==> Reading config file /global/u1/a/amklinv/edison/spack/etc/spack/defaults/packages.yaml
==> Reading config file /global/homes/a/amklinv/.spack/cray/packages.yaml
==> READ LOCK: /global/homes/a/amklinv/.spack/cache/providers/.builti... | KeyError |
def do_install(
self,
keep_prefix=False,
keep_stage=False,
install_deps=True,
skip_patch=False,
verbose=False,
make_jobs=None,
run_tests=False,
fake=False,
explicit=False,
dirty=None,
**kwargs,
):
"""Called by commands to install a package and its dependencies.
P... | def do_install(
self,
keep_prefix=False,
keep_stage=False,
install_deps=True,
skip_patch=False,
verbose=False,
make_jobs=None,
run_tests=False,
fake=False,
explicit=False,
dirty=None,
**kwargs,
):
"""Called by commands to install a package and its dependencies.
P... | https://github.com/spack/spack/issues/2794 | amklinv@edison10:~/edison/spack/bin> ./spack -vd install xsdk arch=cray-CNL-ivybridge
==> Reading config file /global/u1/a/amklinv/edison/spack/etc/spack/defaults/packages.yaml
==> Reading config file /global/homes/a/amklinv/.spack/cray/packages.yaml
==> READ LOCK: /global/homes/a/amklinv/.spack/cache/providers/.builti... | KeyError |
def get_number(prompt, **kwargs):
default = kwargs.get("default", None)
abort = kwargs.get("abort", None)
if default is not None and abort is not None:
prompt += " (default is %s, %s to abort) " % (default, abort)
elif default is not None:
prompt += " (default is %s) " % default
eli... | def get_number(prompt, **kwargs):
default = kwargs.get("default", None)
abort = kwargs.get("abort", None)
if default is not None and abort is not None:
prompt += " (default is %s, %s to abort) " % (default, abort)
elif default is not None:
prompt += " (default is %s) " % default
eli... | https://github.com/spack/spack/issues/3960 | $ spack uninstall --all
...
==> Do you want to proceed? [y/N] Traceback (most recent call last):
File "/home/christoph/spack/bin/spack", line 220, in <module>
main(sys.argv)
File "/home/christoph/spack/bin/spack", line 216, in main
_main(args, unknown)
File "/home/christoph/spack/bin/spack", line 183, in _main
return_v... | NameError |
def get_yes_or_no(prompt, **kwargs):
default_value = kwargs.get("default", None)
if default_value is None:
prompt += " [y/n] "
elif default_value is True:
prompt += " [Y/n] "
elif default_value is False:
prompt += " [y/N] "
else:
raise ValueError("default for get_yes... | def get_yes_or_no(prompt, **kwargs):
default_value = kwargs.get("default", None)
if default_value is None:
prompt += " [y/n] "
elif default_value is True:
prompt += " [Y/n] "
elif default_value is False:
prompt += " [y/N] "
else:
raise ValueError("default for get_yes... | https://github.com/spack/spack/issues/3960 | $ spack uninstall --all
...
==> Do you want to proceed? [y/N] Traceback (most recent call last):
File "/home/christoph/spack/bin/spack", line 220, in <module>
main(sys.argv)
File "/home/christoph/spack/bin/spack", line 216, in main
_main(args, unknown)
File "/home/christoph/spack/bin/spack", line 183, in _main
return_v... | NameError |
def do_install(
self,
keep_prefix=False,
keep_stage=False,
install_deps=True,
skip_patch=False,
verbose=False,
make_jobs=None,
run_tests=False,
fake=False,
explicit=False,
dirty=None,
**kwargs,
):
"""Called by commands to install a package and its dependencies.
P... | def do_install(
self,
keep_prefix=False,
keep_stage=False,
install_deps=True,
skip_patch=False,
verbose=False,
make_jobs=None,
run_tests=False,
fake=False,
explicit=False,
dirty=None,
**kwargs,
):
"""Called by commands to install a package and its dependencies.
P... | https://github.com/spack/spack/issues/3960 | $ spack uninstall --all
...
==> Do you want to proceed? [y/N] Traceback (most recent call last):
File "/home/christoph/spack/bin/spack", line 220, in <module>
main(sys.argv)
File "/home/christoph/spack/bin/spack", line 216, in main
_main(args, unknown)
File "/home/christoph/spack/bin/spack", line 183, in _main
return_v... | NameError |
def build_process(input_stream):
"""Forked for each build. Has its own process and python
module space set up by build_environment.fork()."""
# We are in the child process. This means that our sys.stdin is
# equal to open(os.devnull). Python did this to prevent our process
# and the parent process ... | def build_process(input_stream):
"""Forked for each build. Has its own process and python
module space set up by build_environment.fork()."""
# We are in the child process. This means that our sys.stdin is
# equal to open(os.devnull). Python did this to prevent our process
# and the parent process ... | https://github.com/spack/spack/issues/3960 | $ spack uninstall --all
...
==> Do you want to proceed? [y/N] Traceback (most recent call last):
File "/home/christoph/spack/bin/spack", line 220, in <module>
main(sys.argv)
File "/home/christoph/spack/bin/spack", line 216, in main
_main(args, unknown)
File "/home/christoph/spack/bin/spack", line 183, in _main
return_v... | NameError |
def install(self, spec, prefix):
env["GEOS_DIR"] = spec["geos"].prefix
setup_py("install", "--prefix=%s" % prefix)
# We are not sure if this fix is needed before Python 3.5.2.
# If it is needed, this test should be changed.
# See: https://github.com/LLNL/spack/pull/1964
if spec["python"].versio... | def install(self, spec, prefix):
env["GEOS_DIR"] = spec["geos"].prefix
setup_py("install", "--prefix=%s" % prefix)
| https://github.com/spack/spack/issues/1948 | import mpl_toolkits.basemap
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home2/rpfische/spack3/opt/spack/linux-centos7-x86_64/gcc-4.9.3/py-basemap-1.0.7-ruhltkr62akc3yp2llvsqupikvhkq5b5/lib/python3.5/site-packages/mpl_toolkits/basemap/__init__.py", line 31, in <module>
from mpl_toolkits... | ImportError |
def concretize_architecture(self, spec):
"""If the spec is empty provide the defaults of the platform. If the
architecture is not a string type, then check if either the platform,
target or operating system are concretized. If any of the fields are
changed then return True. If everything is concretized ... | def concretize_architecture(self, spec):
"""If the spec is empty provide the defaults of the platform. If the
architecture is not a string type, then check if either the platform,
target or operating system are concretized. If any of the fields are
changed then return True. If everything is concretized ... | https://github.com/spack/spack/issues/2587 | $ spack arch
cray-CNL-mic_knl
$ spack spec tau
Input spec
--------------------------------
tau
Normalized
--------------------------------
tau
^pdt
Concretized
--------------------------------
Traceback (most recent call last):
File "/home/kumbhar/spack/bin/spack", line 198, in <module>
main()
File "/home/kumbhar/spac... | AttributeError |
def create_db_tarball(args):
tar = which("tar")
tarball_name = "spack-db.%s.tar.gz" % _debug_tarball_suffix()
tarball_path = os.path.abspath(tarball_name)
base = os.path.basename(spack.store.root)
transform_args = []
if "GNU" in tar("--version", output=str):
transform_args = ["--transfo... | def create_db_tarball(args):
tar = which("tar")
tarball_name = "spack-db.%s.tar.gz" % _debug_tarball_suffix()
tarball_path = os.path.abspath(tarball_name)
base = os.path.basename(spack.install_path)
transform_args = []
if "GNU" in tar("--version", output=str):
transform_args = ["--trans... | https://github.com/spack/spack/issues/2123 | $ spack install eigen
==> Installing eigen
==> metis is already installed in /blues/gpfs/home/software/spack-0.9.1/opt/spack/linux-centos6-x86_64/gcc-6.1.0/metis-5.1.0-k4pqzigdgdsuk2r3xls7eyhk6uwvxp46
Traceback (most recent call last):
File "/soft/spack-0.9.1/bin/spack", line 202, in <module>
main()
File "/soft/spack-0... | AssertionError |
def graph(parser, args):
concretize = not args.normalize
if args.installed:
if args.specs:
tty.die("Can't specify specs with --installed")
args.dot = True
specs = spack.store.db.query()
else:
specs = spack.cmd.parse_specs(args.specs, normalize=True, concretize=co... | def graph(parser, args):
concretize = not args.normalize
if args.installed:
if args.specs:
tty.die("Can't specify specs with --installed")
args.dot = True
specs = spack.installed_db.query()
else:
specs = spack.cmd.parse_specs(args.specs, normalize=True, concretiz... | https://github.com/spack/spack/issues/2316 | $ spack setup pism@dev
Traceback (most recent call last):
File "/home2/rpfische/spack4/bin/spack", line 203, in <module>
main()
File "/home2/rpfische/spack4/bin/spack", line 180, in main
return_val = command(parser, args)
File "/home2/rpfische/spack4/lib/spack/spack/cmd/setup.py", line 133, in setup
with spack.installe... | AttributeError |
def setup(self, args):
if not args.spec:
tty.die("spack setup requires a package spec argument.")
specs = spack.cmd.parse_specs(args.spec)
if len(specs) > 1:
tty.die("spack setup only takes one spec.")
# Take a write lock before checking for existence.
with spack.store.db.write_tra... | def setup(self, args):
if not args.spec:
tty.die("spack setup requires a package spec argument.")
specs = spack.cmd.parse_specs(args.spec)
if len(specs) > 1:
tty.die("spack setup only takes one spec.")
# Take a write lock before checking for existence.
with spack.installed_db.write... | https://github.com/spack/spack/issues/2316 | $ spack setup pism@dev
Traceback (most recent call last):
File "/home2/rpfische/spack4/bin/spack", line 203, in <module>
main()
File "/home2/rpfische/spack4/bin/spack", line 180, in main
return_val = command(parser, args)
File "/home2/rpfische/spack4/lib/spack/spack/cmd/setup.py", line 133, in setup
with spack.installe... | AttributeError |
def install(self, spec, prefix):
self.check_variants(spec)
base_components = "ALL" # when in doubt, install everything
mpi_components = ""
mkl_components = ""
daal_components = ""
ipp_components = ""
if not spec.satisfies("+all"):
all_components = get_all_components()
rege... | def install(self, spec, prefix):
self.check_variants(spec)
base_components = "ALL" # when in doubt, install everything
mpi_components = ""
mkl_components = ""
daal_components = ""
ipp_components = ""
if not spec.satisfies("+all"):
all_components = get_all_components()
rege... | https://github.com/spack/spack/issues/2153 | Traceback (most recent call last):
File "/soft/spack-0.9.1/bin/spack", line 202, in <module>
main()
File "/soft/spack-0.9.1/bin/spack", line 179, in main
return_val = command(parser, args)
File "/blues/gpfs/home/software/spack-0.9.1/lib/spack/spack/cmd/install.py", line 340, in install
package.do_install(**kwargs)
File... | OSError |
def __init__(self, path, start=0, length=0):
"""Construct a new lock on the file at ``path``.
By default, the lock applies to the whole file. Optionally,
caller can specify a byte range beginning ``start`` bytes from
the start of the file and extending ``length`` bytes from there.
This exposes a ... | def __init__(self, file_path):
self._file_path = file_path
self._fd = None
self._reads = 0
self._writes = 0
| https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def _lock(self, op, timeout=_default_timeout):
"""This takes a lock using POSIX locks (``fnctl.lockf``).
The lock is implemented as a spin lock using a nonblocking call
to lockf().
On acquiring an exclusive lock, the lock writes this process's
pid and host to the lock file, in case the holding pro... | def _lock(self, op, timeout):
"""This takes a lock using POSIX locks (``fnctl.lockf``).
The lock is implemented as a spin lock using a nonblocking
call to lockf().
On acquiring an exclusive lock, the lock writes this process's
pid and host to the lock file, in case the holding process
needs to... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def _unlock(self):
"""Releases a lock using POSIX locks (``fcntl.lockf``)
Releases the lock regardless of mode. Note that read locks may
be masquerading as write locks, but this removes either.
"""
fcntl.lockf(self._file, fcntl.LOCK_UN, self._length, self._start, os.SEEK_SET)
self._file.close(... | def _unlock(self):
"""Releases a lock using POSIX locks (``fcntl.lockf``)
Releases the lock regardless of mode. Note that read locks may
be masquerading as write locks, but this removes either.
"""
fcntl.lockf(self._fd, fcntl.LOCK_UN)
os.close(self._fd)
self._fd = None
| https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def acquire_read(self, timeout=_default_timeout):
"""Acquires a recursive, shared lock for reading.
Read and write locks can be acquired and released in arbitrary
order, but the POSIX lock is held until all local read and
write locks are released.
Returns True if it is the first acquire and actual... | def acquire_read(self, timeout=_default_timeout):
"""Acquires a recursive, shared lock for reading.
Read and write locks can be acquired and released in arbitrary
order, but the POSIX lock is held until all local read and
write locks are released.
Returns True if it is the first acquire and actual... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def acquire_write(self, timeout=_default_timeout):
"""Acquires a recursive, exclusive lock for writing.
Read and write locks can be acquired and released in arbitrary
order, but the POSIX lock is held until all local read and
write locks are released.
Returns True if it is the first acquire and ac... | def acquire_write(self, timeout=_default_timeout):
"""Acquires a recursive, exclusive lock for writing.
Read and write locks can be acquired and released in arbitrary
order, but the POSIX lock is held until all local read and
write locks are released.
Returns True if it is the first acquire and ac... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def release_read(self):
"""Releases a read lock.
Returns True if the last recursive lock was released, False if
there are still outstanding locks.
Does limited correctness checking: if a read lock is released
when none are held, this will raise an assertion error.
"""
assert self._reads >... | def release_read(self):
"""Releases a read lock.
Returns True if the last recursive lock was released, False if
there are still outstanding locks.
Does limited correctness checking: if a read lock is released
when none are held, this will raise an assertion error.
"""
assert self._reads >... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def release_write(self):
"""Releases a write lock.
Returns True if the last recursive lock was released, False if
there are still outstanding locks.
Does limited correctness checking: if a read lock is released
when none are held, this will raise an assertion error.
"""
assert self._write... | def release_write(self):
"""Releases a write lock.
Returns True if the last recursive lock was released, False if
there are still outstanding locks.
Does limited correctness checking: if a read lock is released
when none are held, this will raise an assertion error.
"""
assert self._write... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def _debug_tarball_suffix():
now = datetime.now()
suffix = now.strftime("%Y-%m-%d-%H%M%S")
git = which("git")
if not git:
return "nobranch-nogit-%s" % suffix
with working_dir(spack.spack_root):
if not os.path.isdir(".git"):
return "nobranch.nogit.%s" % suffix
#... | def _debug_tarball_suffix():
now = datetime.now()
suffix = now.strftime("%Y-%m-%d-%H%M%S")
git = which("git")
if not git:
return "nobranch-nogit-%s" % suffix
with working_dir(spack.spack_root):
if not os.path.isdir(".git"):
return "nobranch.nogit.%s" % suffix
s... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def create_db_tarball(args):
tar = which("tar")
tarball_name = "spack-db.%s.tar.gz" % _debug_tarball_suffix()
tarball_path = os.path.abspath(tarball_name)
base = os.path.basename(spack.install_path)
transform_args = []
if "GNU" in tar("--version", output=str):
transform_args = ["--trans... | def create_db_tarball(args):
tar = which("tar")
tarball_name = "spack-db.%s.tar.gz" % _debug_tarball_suffix()
tarball_path = os.path.abspath(tarball_name)
with working_dir(spack.spack_root):
files = [spack.installed_db._index_path]
files += glob("%s/*/*/*/.spack/spec.yaml" % spack.insta... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def diy(self, args):
if not args.spec:
tty.die("spack diy requires a package spec argument.")
specs = spack.cmd.parse_specs(args.spec)
if len(specs) > 1:
tty.die("spack diy only takes one spec.")
spec = specs[0]
if not spack.repo.exists(spec.name):
tty.warn("No such package... | def diy(self, args):
if not args.spec:
tty.die("spack diy requires a package spec argument.")
specs = spack.cmd.parse_specs(args.spec)
if len(specs) > 1:
tty.die("spack diy only takes one spec.")
# Take a write lock before checking for existence.
with spack.installed_db.write_trans... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def install(parser, args):
if not args.packages:
tty.die("install requires at least one package argument")
if args.jobs is not None:
if args.jobs <= 0:
tty.die("The -j option must be a positive integer!")
if args.no_checksum:
spack.do_checksum = False # TODO: remove th... | def install(parser, args):
if not args.packages:
tty.die("install requires at least one package argument")
if args.jobs is not None:
if args.jobs <= 0:
tty.die("The -j option must be a positive integer!")
if args.no_checksum:
spack.do_checksum = False # TODO: remove th... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def uninstall(parser, args):
if not args.packages and not args.all:
tty.die("uninstall requires at least one package argument.")
uninstall_list = get_uninstall_list(args)
if not args.yes_to_all:
tty.msg("The following packages will be uninstalled : ")
print("")
spack.cmd.di... | def uninstall(parser, args):
if not args.packages and not args.all:
tty.die("uninstall requires at least one package argument.")
with spack.installed_db.write_transaction():
uninstall_list = get_uninstall_list(args)
if not args.yes_to_all:
tty.msg("The following packages wi... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def __init__(self, root, db_dir=None):
"""Create a Database for Spack installations under ``root``.
A Database is a cache of Specs data from ``$prefix/spec.yaml``
files in Spack installation directories.
By default, Database files (data and lock files) are stored
under ``root/.spack-db``, which is... | def __init__(self, root, db_dir=None):
"""Create a Database for Spack installations under ``root``.
A Database is a cache of Specs data from ``$prefix/spec.yaml``
files in Spack installation directories.
By default, Database files (data and lock files) are stored
under ``root/.spack-db``, which is... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def _get_lock(self, key):
"""Create a lock for a key, if necessary, and return a lock object."""
if key not in self._locks:
self._locks[key] = Lock(self._lock_path(key))
return self._locks[key]
| def _get_lock(self, key):
"""Create a lock for a key, if necessary, and return a lock object."""
if key not in self._locks:
lock_file = self._lock_path(key)
if not os.path.exists(lock_file):
touch(lock_file)
self._locks[key] = Lock(lock_file)
return self._locks[key]
| https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def do_install(
self,
keep_prefix=False,
keep_stage=False,
install_deps=True,
install_self=True,
skip_patch=False,
verbose=False,
make_jobs=None,
run_tests=False,
fake=False,
explicit=False,
dirty=False,
install_phases=install_phases,
):
"""Called by commands to i... | def do_install(
self,
keep_prefix=False,
keep_stage=False,
install_deps=True,
install_self=True,
skip_patch=False,
verbose=False,
make_jobs=None,
run_tests=False,
fake=False,
explicit=False,
dirty=False,
install_phases=install_phases,
):
"""Called by commands to i... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def build_process():
"""Forked for each build. Has its own process and python
module space set up by build_environment.fork()."""
start_time = time.time()
if not fake:
if not skip_patch:
self.do_patch()
else:
self.do_stage()
tty.msg("Building %s" % self.name... | def build_process():
"""Forked for each build. Has its own process and python
module space set up by build_environment.fork()."""
start_time = time.time()
if not fake:
if not skip_patch:
self.do_patch()
else:
self.do_stage()
tty.msg("Building %s" % self.name... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def do_uninstall(self, force=False):
if not self.installed:
# prefix may not exist, but DB may be inconsistent. Try to fix by
# removing, but omit hooks.
specs = spack.installed_db.query(self.spec, installed=True)
if specs:
spack.installed_db.remove(specs[0])
... | def do_uninstall(self, force=False):
if not self.installed:
# prefix may not exist, but DB may be inconsistent. Try to fix by
# removing, but omit hooks.
specs = spack.installed_db.query(self.spec, installed=True)
if specs:
spack.installed_db.remove(specs[0])
... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def dag_hash(self, length=None):
"""Return a hash of the entire spec DAG, including connectivity."""
if self._hash:
return self._hash[:length]
else:
yaml_text = syaml.dump(
self.to_node_dict(), default_flow_style=True, width=sys.maxint
)
sha = hashlib.sha1(yaml_te... | def dag_hash(self, length=None):
"""
Return a hash of the entire spec DAG, including connectivity.
"""
if self._hash:
return self._hash[:length]
else:
# XXX(deptype): ignore 'build' dependencies here
yaml_text = syaml.dump(
self.to_node_dict(), default_flow_style=... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def to_node_dict(self):
d = syaml_dict()
if self.versions:
d.update(self.versions.to_dict())
if self.compiler:
d.update(self.compiler.to_dict())
if self.namespace:
d["namespace"] = self.namespace
params = syaml_dict(sorted((name, v.value) for name, v in self.variants.item... | def to_node_dict(self):
d = syaml_dict()
if self.versions:
d.update(self.versions.to_dict())
if self.compiler:
d.update(self.compiler.to_dict())
if self.namespace:
d["namespace"] = self.namespace
params = syaml_dict(sorted((name, v.value) for name, v in self.variants.item... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def __init__(
self,
url_or_fetch_strategy,
name=None,
mirror_path=None,
keep=False,
path=None,
lock=True,
):
"""Create a stage object.
Parameters:
url_or_fetch_strategy
URL of the archive to be downloaded into this stage, OR
a valid FetchStrategy.
nam... | def __init__(
self, url_or_fetch_strategy, name=None, mirror_path=None, keep=False, path=None
):
"""Create a stage object.
Parameters:
url_or_fetch_strategy
URL of the archive to be downloaded into this stage, OR
a valid FetchStrategy.
name
If a name is provided, t... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def __enter__(self):
"""
Entering a stage context will create the stage directory
Returns:
self
"""
if self._lock is not None:
self._lock.acquire_write(timeout=60)
self.create()
return self
| def __enter__(self):
"""
Entering a stage context will create the stage directory
Returns:
self
"""
self.create()
return self
| https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def __exit__(self, exc_type, exc_val, exc_tb):
"""
Exiting from a stage context will delete the stage directory unless:
- it was explicitly requested not to do so
- an exception has been raised
Args:
exc_type: exception type
exc_val: exception value
exc_tb: exception traceba... | def __exit__(self, exc_type, exc_val, exc_tb):
"""
Exiting from a stage context will delete the stage directory unless:
- it was explicitly requested not to do so
- an exception has been raised
Args:
exc_type: exception type
exc_val: exception value
exc_tb: exception traceba... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def create(self):
"""
Creates the stage directory
If self.tmp_root evaluates to False, the stage directory is
created directly under spack.stage_path, otherwise this will
attempt to create a stage in a temporary directory and link it
into spack.stage_path.
Spack will use the first writable... | def create(self):
"""
Creates the stage directory
If self.tmp_root evaluates to False, the stage directory is
created directly under spack.stage_path, otherwise this will
attempt to create a stage in a temporary directory and link it
into spack.stage_path.
Spack will use the first writable... | https://github.com/spack/spack/issues/1266 | ==> Installing cactusext
==> openmpi is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/openmpi-2.0.0-5l3pomaqonrx3phvbm4kblzsms56ljtj
==> hwloc is already installed in /home/ux452368/comet/src/spack/opt/spack/linux-centos6-x86_64/gcc-6.1.0-spack/hwloc-1.11.3-xgdwohjb2... | KeyError |
def _lock(self, op, timeout):
"""This takes a lock using POSIX locks (``fnctl.lockf``).
The lock is implemented as a spin lock using a nonblocking
call to lockf().
On acquiring an exclusive lock, the lock writes this process's
pid and host to the lock file, in case the holding process
needs to... | def _lock(self, op, timeout):
"""This takes a lock using POSIX locks (``fnctl.lockf``).
The lock is implemented as a spin lock using a nonblocking
call to lockf().
On acquiring an exclusive lock, the lock writes this process's
pid and host to the lock file, in case the holding process
needs to... | https://github.com/spack/spack/issues/1904 | $ ./spack/bin/spack find
Traceback (most recent call last):
File "./spack/bin/spack", line 192, in <module>
main()
File "./spack/bin/spack", line 169, in main
return_val = command(parser, args)
File "/users/kumbhar/spack/lib/spack/spack/cmd/find.py", line 148, in find
specs = set(spack.installed_db.query(**q_args))
Fil... | IOError |
def __init__(self, spec, path, installed, ref_count=0):
self.spec = spec
self.path = str(path)
self.installed = bool(installed)
self.ref_count = ref_count
| def __init__(self, spec, path, installed, ref_count=0):
self.spec = spec
self.path = path
self.installed = installed
self.ref_count = ref_count
| https://github.com/spack/spack/issues/150 | paul ~/C/s/bin > ./spack install memaxes
==> Installing memaxes
==> cmake is already installed in /home/paul/Clinic/spack/opt/spack/x86_64/gcc-5.2.1/cmake-3.0.2-bv634arumx3m47mpynkw5ygmiqdlcykp.
==> Installing qt
==> glib is already installed in /home/paul/Clinic/spack/opt/spack/x86_64/gcc-5.2.1/glib-2.42.1-dwjk6vntaa4... | KeyError |
def _write_to_yaml(self, stream):
"""Write out the databsae to a YAML file.
This function does not do any locking or transactions.
"""
# map from per-spec hash code to installation record.
installs = dict((k, v.to_dict()) for k, v in self._data.items())
# database includes installation list an... | def _write_to_yaml(self, stream):
"""Write out the databsae to a YAML file.
This function does not do any locking or transactions.
"""
# map from per-spec hash code to installation record.
installs = dict((k, v.to_dict()) for k, v in self._data.items())
# databaes includes installation list an... | https://github.com/spack/spack/issues/150 | paul ~/C/s/bin > ./spack install memaxes
==> Installing memaxes
==> cmake is already installed in /home/paul/Clinic/spack/opt/spack/x86_64/gcc-5.2.1/cmake-3.0.2-bv634arumx3m47mpynkw5ygmiqdlcykp.
==> Installing qt
==> glib is already installed in /home/paul/Clinic/spack/opt/spack/x86_64/gcc-5.2.1/glib-2.42.1-dwjk6vntaa4... | KeyError |
def _write(self):
"""Write the in-memory database index to its file path.
Does no locking.
"""
temp_file = self._index_path + (".%s.%s.temp" % (socket.getfqdn(), os.getpid()))
# Write a temporary database file them move it into place
try:
with open(temp_file, "w") as f:
se... | def _write(self):
"""Write the in-memory database index to its file path.
Does no locking.
"""
temp_name = "%s.%s.temp" % (socket.getfqdn(), os.getpid())
temp_file = join_path(self._db_dir, temp_name)
# Write a temporary database file them move it into place
try:
with open(temp_fi... | https://github.com/spack/spack/issues/150 | paul ~/C/s/bin > ./spack install memaxes
==> Installing memaxes
==> cmake is already installed in /home/paul/Clinic/spack/opt/spack/x86_64/gcc-5.2.1/cmake-3.0.2-bv634arumx3m47mpynkw5ygmiqdlcykp.
==> Installing qt
==> glib is already installed in /home/paul/Clinic/spack/opt/spack/x86_64/gcc-5.2.1/glib-2.42.1-dwjk6vntaa4... | KeyError |
def find_working_dir(self):
# type: () -> Optional[str]
view = self._current_view()
window = view.window() if view else None
file_name = self._current_filename()
if file_name:
file_dir = os.path.dirname(file_name)
if os.path.isdir(file_dir):
return file_dir
if windo... | def find_working_dir(self):
# type: () -> Optional[str]
view = self._current_view()
window = view.window() if view else None
if view and view.file_name():
file_dir = os.path.dirname(view.file_name())
if os.path.isdir(file_dir):
return file_dir
if window:
folders... | https://github.com/timbrel/GitSavvy/issues/1448 | Traceback (most recent call last):
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 157, in git
working_dir = self.repo_path
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 437, in repo_path
return self.get_repo_path()
File... | AttributeError |
def find_repo_path(self):
# type: () -> Optional[str]
"""
Similar to find_working_dir, except that it does not stop on the first
directory found, rather on the first git repository found.
"""
view = self._current_view()
window = view.window() if view else None
repo_path = None
file_... | def find_repo_path(self):
# type: () -> Optional[str]
"""
Similar to find_working_dir, except that it does not stop on the first
directory found, rather on the first git repository found.
"""
view = self._current_view()
window = view.window() if view else None
repo_path = None
# try... | https://github.com/timbrel/GitSavvy/issues/1448 | Traceback (most recent call last):
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 157, in git
working_dir = self.repo_path
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 437, in repo_path
return self.get_repo_path()
File... | AttributeError |
def __init__(self, window=None):
# type: (sublime.Window) -> None
self._window = window or sublime.active_window()
self._global_settings = get_global_settings()
| def __init__(self, parent=None):
self.parent = parent
self.global_settings = sublime.load_settings("GitSavvy.sublime-settings")
| https://github.com/timbrel/GitSavvy/issues/1201 | Traceback (most recent call last):
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 220, in git
stdout, stderr = self.decode_stdout(stdout), self.decode_stdout(stderr)
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 277, in... | AttributeError |
def get(self, key, default=None):
try:
return get_project_settings(self._window)[key]
except KeyError:
return self._global_settings.get(key, default)
| def get(self, key, default=None):
window = sublime.active_window()
view = window.active_view()
project_savvy_settings = view.settings().get("GitSavvy", {}) or {}
if key in project_savvy_settings:
return project_savvy_settings[key]
# fall back to old style project setting
project_data =... | https://github.com/timbrel/GitSavvy/issues/1201 | Traceback (most recent call last):
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 220, in git
stdout, stderr = self.decode_stdout(stdout), self.decode_stdout(stderr)
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 277, in... | AttributeError |
def set(self, key, value):
self._global_settings.set(key, value)
| def set(self, key, value):
self.global_settings.set(key, value)
| https://github.com/timbrel/GitSavvy/issues/1201 | Traceback (most recent call last):
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 220, in git
stdout, stderr = self.decode_stdout(stdout), self.decode_stdout(stderr)
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 277, in... | AttributeError |
def savvy_settings(self):
if not self._savvy_settings:
window = (
maybe(lambda: self.window) # type: ignore[attr-defined]
or maybe(lambda: self.view.window()) # type: ignore[attr-defined]
or sublime.active_window()
)
self._savvy_settings = GitSavvySettin... | def savvy_settings(self):
if not self._savvy_settings:
self._savvy_settings = GitSavvySettings(self)
return self._savvy_settings
| https://github.com/timbrel/GitSavvy/issues/1201 | Traceback (most recent call last):
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 220, in git
stdout, stderr = self.decode_stdout(stdout), self.decode_stdout(stderr)
File "C:\Users\c-flo\AppData\Roaming\Sublime Text 3\Packages\GitSavvy\core\git_command.py", line 277, in... | AttributeError |
def branch_relatives(self, branch):
# type: (str) -> List[str]
"""Get list of all relatives from ``git show-branch`` results"""
output = self.git("show-branch", "--no-color") # type: str
try:
prelude, body = re.split(r"^-+$", output, flags=re.M)
except ValueError:
# If there is onl... | def branch_relatives(self, branch):
# type: (str) -> List[str]
"""Get list of all relatives from ``git show-branch`` results"""
output = self.git("show-branch", "--no-color")
prelude, body = re.split(r"^-+$", output, flags=re.M)
match = re.search(r"^(\s+)\*", prelude, re.M)
if not match:
... | https://github.com/timbrel/GitSavvy/issues/1261 | Traceback (most recent call last):
File "/Applications/Sublime Text.app/Contents/MacOS/sublime_plugin.py", line 1052, in run_
return self.run()
File "/Users/pavel.savchenko/Library/Application Support/Sublime Text 3/Packages/GitSavvy/core/interfaces/rebase.py", line 48, in run
RebaseInterface(repo_path=self.repo_path)
... | ValueError |
def nearest_branch(self, branch, default="master"):
# type: (str, str) -> str
"""
Find the nearest commit in current branch history that exists
on a different branch and return that branch name.
If no such branch is found, return the given default ("master" if not
specified).
"""
relat... | def nearest_branch(self, branch, default="master"):
# type: (str, str) -> str
"""
Find the nearest commit in current branch history that exists
on a different branch and return that branch name.
We filter these branches through a list of known ancestors which have
an initial branch point with c... | https://github.com/timbrel/GitSavvy/issues/1261 | Traceback (most recent call last):
File "/Applications/Sublime Text.app/Contents/MacOS/sublime_plugin.py", line 1052, in run_
return self.run()
File "/Users/pavel.savchenko/Library/Application Support/Sublime Text 3/Packages/GitSavvy/core/interfaces/rebase.py", line 48, in run
RebaseInterface(repo_path=self.repo_path)
... | ValueError |
def git(
self,
*args,
stdin=None,
working_dir=None,
show_panel=False,
throw_on_stderr=True,
decode=True,
encode=True,
stdin_encoding="UTF-8",
custom_environ=None,
):
"""
Run the git command specified in `*args` and return the output
of the git command as a string.
... | def git(
self,
*args,
stdin=None,
working_dir=None,
show_panel=False,
throw_on_stderr=True,
decode=True,
encode=True,
stdin_encoding="UTF-8",
custom_environ=None,
):
"""
Run the git command specified in `*args` and return the output
of the git command as a string.
... | https://github.com/timbrel/GitSavvy/issues/966 | 'utf-8' codec can't decode byte 0x8a in position 16: invalid start byte
Traceback (most recent call last):
File "[...]Sublime\Data\Installed Packages\GitSavvy.sublime-package\core/git_command.py", line 215, in git
stdout, stderr = self.decode_stdout(stdout), stderr.decode()
UnicodeDecodeError: 'utf-8' codec can't deco... | UnicodeDecodeError |
def decode_stdout(self, stdout):
fallback_encoding = self.savvy_settings.get("fallback_encoding")
silent_fallback = self.savvy_settings.get("silent_fallback")
try:
return stdout.decode()
except UnicodeDecodeError:
try:
return stdout.decode("latin-1")
except UnicodeDec... | def decode_stdout(self, stdout):
fallback_encoding = self.savvy_settings.get("fallback_encoding")
silent_fallback = self.savvy_settings.get("silent_fallback")
try:
return stdout.decode()
except UnicodeDecodeError as unicode_err:
try:
return stdout.decode("latin-1")
ex... | https://github.com/timbrel/GitSavvy/issues/966 | 'utf-8' codec can't decode byte 0x8a in position 16: invalid start byte
Traceback (most recent call last):
File "[...]Sublime\Data\Installed Packages\GitSavvy.sublime-package\core/git_command.py", line 215, in git
stdout, stderr = self.decode_stdout(stdout), stderr.decode()
UnicodeDecodeError: 'utf-8' codec can't deco... | UnicodeDecodeError |
def do_action(self, commit_hash, **kwargs):
self.git("cherry-pick", commit_hash)
sublime.active_window().status_message(
"Commit %s cherry-picked successfully." % commit_hash
)
util.view.refresh_gitsavvy(self.window.active_view())
| def do_action(self, commit_hash, **kwargs):
self.git("cherry-pick", commit_hash)
self.view.window().status_message(
"Commit %s cherry-picked successfully." % commit_hash
)
util.view.refresh_gitsavvy(self.window.active_view())
| https://github.com/timbrel/GitSavvy/issues/941 | Traceback (most recent call last):
File "/Users/koenlageveen/Library/Application Support/Sublime Text 3/Installed Packages/GitSavvy.sublime-package/core/ui_mixins/quick_panel.py", line 526, in <lambda>
File "/Users/koenlageveen/Library/Application Support/Sublime Text 3/Installed Packages/GitSavvy.sublime-package/core/... | AttributeError |
def refresh_gitsavvy(
view, refresh_sidebar=False, refresh_status_bar=True, interface_reset_cursor=False
):
"""
Called after GitSavvy action was taken that may have effected the
state of the Git repo.
"""
if view is None:
return
if view.settings().get("git_savvy.interface") is not N... | def refresh_gitsavvy(
view, refresh_sidebar=False, refresh_status_bar=True, interface_reset_cursor=False
):
"""
Called after GitSavvy action was taken that may have effected the
state of the Git repo.
"""
if view is None:
return
if view.settings().get("git_savvy.interface") is not N... | https://github.com/timbrel/GitSavvy/issues/772 | Traceback (most recent call last):
File "core.git_command in /Users/user/Library/Application Support/Sublime Text 3/Installed Packages/GitSavvy.sublime-package", line 103, in git
File "core.git_command in /Users/user/Library/Application Support/Sublime Text 3/Installed Packages/GitSavvy.sublime-package", line 297, in r... | RuntimeError |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.