after_merge stringlengths 28 79.6k | before_merge stringlengths 20 79.6k | url stringlengths 38 71 | full_traceback stringlengths 43 922k | traceback_type stringclasses 555
values |
|---|---|---|---|---|
def raise_uncaught_exception(self, exc):
if settings.DEBUG:
request = self.request
renderer_format = getattr(request.accepted_renderer, "format")
use_plaintext_traceback = renderer_format not in ("html", "api", "admin")
request.force_plaintext_errors(use_plaintext_traceback)
rais... | def raise_uncaught_exception(self, exc):
if settings.DEBUG:
request = self.request
renderer_format = getattr(request.accepted_renderer, "format")
use_plaintext_traceback = renderer_format not in ("html", "api", "admin")
request.force_plaintext_errors(use_plaintext_traceback)
rais... | https://github.com/encode/django-rest-framework/issues/4631 | Traceback (most recent call last):
File "/Users/coagulant/projects/myproject/project/tests/api/account_tests.py", line 346, in test_put_account_detail_restricted_fields_200
{'email': u'some.unconfirmed@email.com'})
File "/Users/coagulant/.envs/myproject/lib/python2.7/site-packages/rest_framework/test.py", line 307, in ... | KeyError |
def get_serializer_fields(self, path, method, callback, view):
"""
Return a list of `coreapi.Field` instances corresponding to any
request body input, as determined by the serializer class.
"""
if method not in ("PUT", "PATCH", "POST"):
return []
fields = []
if not (
hasatt... | def get_serializer_fields(self, path, method, callback, view):
"""
Return a list of `coreapi.Field` instances corresponding to any
request body input, as determined by the serializer class.
"""
if method not in ("PUT", "PATCH", "POST"):
return []
fields = []
serializer_class = view... | https://github.com/encode/django-rest-framework/issues/4265 | Traceback (most recent call last):
File "/home/ashish/Env/backend/lib/python3.4/site-packages/django/core/handlers/base.py", line 149, in get_response
response = self.process_exception_by_middleware(e, request)
File "/home/ashish/Env/backend/lib/python3.4/site-packages/django/core/handlers/base.py", line 147, in get_re... | AttributeError |
def as_form_field(self):
if self.value is None:
return ""
values = {}
for key, value in self.value.items():
if isinstance(value, (list, dict)):
values[key] = value
else:
values[key] = "" if value is None else force_text(value)
return self.__class__(self._... | def as_form_field(self):
values = {}
for key, value in self.value.items():
if isinstance(value, (list, dict)):
values[key] = value
else:
values[key] = "" if value is None else force_text(value)
return self.__class__(self._field, values, self.errors, self._prefix)
| https://github.com/encode/django-rest-framework/issues/3260 | Traceback (most recent call last):
File "<path_to_virtualenv>/lib/python2.7/site-packages/django/core/handlers/base.py", line 164, in get_response
response = response.render()
File "<path_to_virtualenv>/lib/python2.7/site-packages/django/template/response.py", line 158, in render
self.content = self.rendered_content
Fi... | AttributeError |
def to_representation(self, value):
if not value:
return None
if self.format is None:
return value
# Applying a `DateField` to a datetime value is almost always
# not a sensible thing to do, as it means naively dropping
# any explicit or implicit timezone info.
assert not isins... | def to_representation(self, value):
if self.format is None:
return value
# Applying a `DateField` to a datetime value is almost always
# not a sensible thing to do, as it means naively dropping
# any explicit or implicit timezone info.
assert not isinstance(value, datetime.datetime), (
... | https://github.com/encode/django-rest-framework/issues/2687 | Traceback (most recent call last):
File "tests.py", line 10, in test_post_root_view
response = self.view(request).render()
File "/path/to/django/views/decorators/csrf.py", line 57, in wrapped_view
return view_func(*args, **kwargs)
File "/path/to/rest_framework/viewsets.py", line 85, in view
return self.dispatch(request... | AttributeError |
def set_context(self, serializer_field):
self.user = serializer_field.context["request"].user
| def set_context(self, serializer_field):
self.is_update = serializer_field.parent.instance is not None
| https://github.com/encode/django-rest-framework/issues/1945 | ======================================================================
ERROR: test_that_when_serializing_a_user_with_a_modified_password_but_without_the_old_password_then_the_serializer_is_not_valid (users.tests.unit.test_user_serializer.UserSerializationTestCase)
-------------------------------------------------------... | KeyError |
def __call__(self):
return self.user
| def __call__(self):
if self.is_update:
raise SkipField()
if callable(self.default):
return self.default()
return self.default
| https://github.com/encode/django-rest-framework/issues/1945 | ======================================================================
ERROR: test_that_when_serializing_a_user_with_a_modified_password_but_without_the_old_password_then_the_serializer_is_not_valid (users.tests.unit.test_user_serializer.UserSerializationTestCase)
-------------------------------------------------------... | KeyError |
def set_context(self, serializer_field):
"""
This hook is called by the serializer instance,
prior to the validation call being made.
"""
# Determine the underlying model field name. This may not be the
# same as the serializer field name if `source=<>` is set.
self.field_name = serializer_f... | def set_context(self, serializer_field):
# Determine the underlying model field name. This may not be the
# same as the serializer field name if `source=<>` is set.
self.field_name = serializer_field.source_attrs[0]
# Determine the existing instance, if this is an update operation.
self.instance = g... | https://github.com/encode/django-rest-framework/issues/1945 | ======================================================================
ERROR: test_that_when_serializing_a_user_with_a_modified_password_but_without_the_old_password_then_the_serializer_is_not_valid (users.tests.unit.test_user_serializer.UserSerializationTestCase)
-------------------------------------------------------... | KeyError |
def set_context(self, serializer):
"""
This hook is called by the serializer instance,
prior to the validation call being made.
"""
# Determine the existing instance, if this is an update operation.
self.instance = getattr(serializer, "instance", None)
| def set_context(self, serializer):
# Determine the existing instance, if this is an update operation.
self.instance = getattr(serializer, "instance", None)
| https://github.com/encode/django-rest-framework/issues/1945 | ======================================================================
ERROR: test_that_when_serializing_a_user_with_a_modified_password_but_without_the_old_password_then_the_serializer_is_not_valid (users.tests.unit.test_user_serializer.UserSerializationTestCase)
-------------------------------------------------------... | KeyError |
def __call__(self, attrs):
self.enforce_required_fields(attrs)
queryset = self.queryset
queryset = self.filter_queryset(attrs, queryset)
queryset = self.exclude_current_instance(attrs, queryset)
if queryset.exists():
field_names = ", ".join(self.fields)
raise ValidationError(self.mes... | def __call__(self, attrs):
# Ensure uniqueness.
filter_kwargs = dict(
[(field_name, attrs[field_name]) for field_name in self.fields]
)
queryset = self.queryset.filter(**filter_kwargs)
if self.instance is not None:
queryset = queryset.exclude(pk=self.instance.pk)
if queryset.exis... | https://github.com/encode/django-rest-framework/issues/1945 | ======================================================================
ERROR: test_that_when_serializing_a_user_with_a_modified_password_but_without_the_old_password_then_the_serializer_is_not_valid (users.tests.unit.test_user_serializer.UserSerializationTestCase)
-------------------------------------------------------... | KeyError |
def set_context(self, serializer):
"""
This hook is called by the serializer instance,
prior to the validation call being made.
"""
# Determine the underlying model field names. These may not be the
# same as the serializer field names if `source=<>` is set.
self.field_name = serializer.fiel... | def set_context(self, serializer):
# Determine the underlying model field names. These may not be the
# same as the serializer field names if `source=<>` is set.
self.field_name = serializer.fields[self.field].source_attrs[0]
self.date_field_name = serializer.fields[self.date_field].source_attrs[0]
... | https://github.com/encode/django-rest-framework/issues/1945 | ======================================================================
ERROR: test_that_when_serializing_a_user_with_a_modified_password_but_without_the_old_password_then_the_serializer_is_not_valid (users.tests.unit.test_user_serializer.UserSerializationTestCase)
-------------------------------------------------------... | KeyError |
def __call__(self, attrs):
self.enforce_required_fields(attrs)
queryset = self.queryset
queryset = self.filter_queryset(attrs, queryset)
queryset = self.exclude_current_instance(attrs, queryset)
if queryset.exists():
message = self.message.format(date_field=self.date_field)
raise Val... | def __call__(self, attrs):
filter_kwargs = self.get_filter_kwargs(attrs)
queryset = self.queryset.filter(**filter_kwargs)
if self.instance is not None:
queryset = queryset.exclude(pk=self.instance.pk)
if queryset.exists():
message = self.message.format(date_field=self.date_field)
... | https://github.com/encode/django-rest-framework/issues/1945 | ======================================================================
ERROR: test_that_when_serializing_a_user_with_a_modified_password_but_without_the_old_password_then_the_serializer_is_not_valid (users.tests.unit.test_user_serializer.UserSerializationTestCase)
-------------------------------------------------------... | KeyError |
def _write_mseed(
stream,
filename,
encoding=None,
reclen=None,
byteorder=None,
sequence_number=None,
flush=True,
verbose=0,
**_kwargs,
):
"""
Write Mini-SEED file from a Stream object.
.. warning::
This function should NOT be called directly, it registers via th... | def _write_mseed(
stream,
filename,
encoding=None,
reclen=None,
byteorder=None,
sequence_number=None,
flush=True,
verbose=0,
**_kwargs,
):
"""
Write Mini-SEED file from a Stream object.
.. warning::
This function should NOT be called directly, it registers via th... | https://github.com/obspy/obspy/issues/2488 | Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "//anaconda2/lib/python2.7/site-packages/obspy/core/stream.py", line 1443, in write
write_format(self, filename, **kwargs)
File "//anaconda2/lib/python2.7/site-packages/obspy/io/mseed/core.py", line 626, in _write_mseed
(1.0 / trace.stats.sampl... | ZeroDivisionError |
def recalculate_overall_sensitivity(self, frequency=None):
"""
Recalculates the overall sensitivity.
:param frequency: Choose frequency at which to calculate the
sensitivity. If not given it will be chosen automatically.
"""
if not hasattr(self, "instrument_sensitivity"):
msg = (
... | def recalculate_overall_sensitivity(self, frequency=None):
"""
Recalculates the overall sensitivity.
:param frequency: Choose frequency at which to calculate the
sensitivity. If not given it will be chosen automatically.
"""
if not hasattr(self, "instrument_sensitivity"):
msg = (
... | https://github.com/obspy/obspy/issues/2338 | In [0]: from obspy import read_inventory, UTCDateTime as UTC
In [1]: inv = read_inventory()
In [4]: rsp = inv.get_response('BW.RJOB..EHZ', UTC())
In [5]: rsp.recalculate_overall_sensitivity(5)
---------------------------------------------------------------------------
ArgumentError Traceback... | ArgumentError |
def _read_fixed_header(self):
"""
Reads the fixed header of the Mini-SEED file and writes all entries to
self.fixed_header, a dictionary.
"""
# Init empty fixed header dictionary. Use an ordered dictionary to
# achieve the same order as in the Mini-SEED manual.
self.fixed_header = OrderedDic... | def _read_fixed_header(self):
"""
Reads the fixed header of the Mini-SEED file and writes all entries to
self.fixed_header, a dictionary.
"""
# Init empty fixed header dictionary. Use an ordered dictionary to
# achieve the same order as in the Mini-SEED manual.
self.fixed_header = OrderedDic... | https://github.com/obspy/obspy/issues/2030 | Traceback (most recent call last):
File "./10_downloader.py", line 122, in <module>
stationxml_storage=stationxml_storage)
File "/home/legovini/obspy/obspy/clients/fdsn/mass_downloader/mass_downloader.py", line 201, in download
threads_per_client=threads_per_client)
File "/home/legovini/obspy/obspy/clients/fdsn/mass_do... | NotImplementedError |
def __str__(self):
"""
Set the string representation of the class.
"""
if self.filename:
filename = self.filename
else:
filename = "Unknown"
if self.endian == "<":
endian = "Little Endian"
else:
endian = "Big Endian"
if self.did_goto:
goto_info = (... | def __str__(self):
"""
Set the string representation of the class.
"""
if self.filename:
filename = self.filename
else:
filename = "Unknown"
if self.endian == "<":
endian = "Little Endian"
else:
endian = "Big Endian"
if self.did_goto:
goto_info = (... | https://github.com/obspy/obspy/issues/2030 | Traceback (most recent call last):
File "./10_downloader.py", line 122, in <module>
stationxml_storage=stationxml_storage)
File "/home/legovini/obspy/obspy/clients/fdsn/mass_downloader/mass_downloader.py", line 201, in download
threads_per_client=threads_per_client)
File "/home/legovini/obspy/obspy/clients/fdsn/mass_do... | NotImplementedError |
def _get_record_information(file_object, offset=0, endian=None):
"""
Searches the first MiniSEED record stored in file_object at the current
position and returns some information about it.
If offset is given, the MiniSEED record is assumed to start at current
position + offset in file_object.
... | def _get_record_information(file_object, offset=0, endian=None):
"""
Searches the first MiniSEED record stored in file_object at the current
position and returns some information about it.
If offset is given, the MiniSEED record is assumed to start at current
position + offset in file_object.
... | https://github.com/obspy/obspy/issues/2030 | Traceback (most recent call last):
File "./10_downloader.py", line 122, in <module>
stationxml_storage=stationxml_storage)
File "/home/legovini/obspy/obspy/clients/fdsn/mass_downloader/mass_downloader.py", line 201, in download
threads_per_client=threads_per_client)
File "/home/legovini/obspy/obspy/clients/fdsn/mass_do... | NotImplementedError |
def __setitem__(self, key, value):
""" """
# keys which need to refresh derived values
if key in ["delta", "sampling_rate", "starttime", "npts"]:
# ensure correct data type
if key == "delta":
key = "sampling_rate"
try:
value = 1.0 / float(value)
... | def __setitem__(self, key, value):
""" """
# keys which need to refresh derived values
if key in ["delta", "sampling_rate", "starttime", "npts"]:
# ensure correct data type
if key == "delta":
key = "sampling_rate"
value = 1.0 / float(value)
elif key == "sampli... | https://github.com/obspy/obspy/issues/1989 | ---------------------------------------------------------------------------
ZeroDivisionError Traceback (most recent call last)
<ipython-input-7-c105e6dd98fb> in <module>()
----> 1 pickle.loads(pickle.dumps(t))
~/code/obspy/obspy/core/util/attribdict.py in __setstate__(self, adict)
113 ... | ZeroDivisionError |
def _split_routing_response(data):
"""
Splits the routing responses per data center for the EIDAWS output.
Returns a dictionary with the keys being the root URLs of the fdsnws
endpoints and the values the data payloads for that endpoint.
:param data: The return value from the EIDAWS routing servic... | def _split_routing_response(data):
"""
Splits the routing responses per data center for the EIDAWS output.
Returns a dictionary with the keys being the root URLs of the fdsnws
endpoints and the values the data payloads for that endpoint.
:param data: The return value from the EIDAWS routing servic... | https://github.com/obspy/obspy/issues/1954 | Downloading http://service.iris.edu/irisws/fedcatalog/1/query ...
Sending along the following payload:
----------------------------------------------------------------------
level=station
latitude=30
longitude=14
maxradius=10
format=request
* * * * 2017-10-20T00:00:00.000000 *
------------------------------------------... | ValueError |
def _split_routing_response(data, service):
"""
Splits the routing responses per data center for the federator output.
Returns a dictionary with the keys being the root URLs of the fdsnws
endpoints and the values the data payloads for that endpoint.
:param data: The return value from the EIDAWS ro... | def _split_routing_response(data, service):
"""
Splits the routing responses per data center for the federator output.
Returns a dictionary with the keys being the root URLs of the fdsnws
endpoints and the values the data payloads for that endpoint.
:param data: The return value from the EIDAWS ro... | https://github.com/obspy/obspy/issues/1954 | Downloading http://service.iris.edu/irisws/fedcatalog/1/query ...
Sending along the following payload:
----------------------------------------------------------------------
level=station
latitude=30
longitude=14
maxradius=10
format=request
* * * * 2017-10-20T00:00:00.000000 *
------------------------------------------... | ValueError |
def _run_indexer(options):
logging.info("Starting indexer %s:%s ..." % (options.host, options.port))
# initialize crawler
service = WaveformIndexer((options.host, options.port), MyHandler)
service.log = logging
try:
# prepare paths
if "," in options.data:
paths = options.... | def _run_indexer(options):
logging.info("Starting indexer %s:%s ..." % (options.host, options.port))
# initialize crawler
service = WaveformIndexer((options.host, options.port), MyHandler)
service.log = logging
try:
# prepare paths
if "," in options.data:
paths = options.... | https://github.com/obspy/obspy/issues/1369 | 2016-04-12 11:47:36,562 [INFO] Starting indexer localhost:0 ...
Traceback (most recent call last):
File "/home/richter/anaconda/bin/obspy-indexer", line 9, in <module>
load_entry_point('obspy==1.0.1', 'console_scripts', 'obspy-indexer')()
File "/home/richter/anaconda/lib/python2.7/site-packages/obspy/db/scripts/indexer... | TypeError |
def depthIncCheck(self):
"""
Check that no slowness layer is too thick.
The maximum is determined by ``self.maxDepthInterval``.
"""
for wave in [self.SWAVE, self.PWAVE]:
# These might change with calls to addSlowness, so be sure we have
# the correct copy.
if wave == self.PW... | def depthIncCheck(self):
"""
Check that no slowness layer is too thick.
The maximum is determined by ``self.maxDepthInterval``.
"""
for wave in [self.SWAVE, self.PWAVE]:
# These might change with calls to addSlowness, so be sure we have
# the correct copy.
if wave == self.PW... | https://github.com/obspy/obspy/issues/1195 | Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/lion/workspace/code/obspy/obspy/taup/taup_create.py", line 119, in run
self.tMod = self.createTauModel(self.vMod)
File "/Users/lion/workspace/code/obspy/obspy/taup/taup_create.py", line 85, in createTauModel
SlownessModel.DEFAULT_SLOWN... | LookupError |
def plot(self, *args, **kwargs):
"""
Creates a waveform plot of the current ObsPy Stream object.
:param outfile: Output file string. Also used to automatically
determine the output format. Supported file formats depend on your
matplotlib backend. Most backends support png, pdf, ps, eps and
... | def plot(self, *args, **kwargs):
"""
Creates a waveform plot of the current ObsPy Stream object.
:param outfile: Output file string. Also used to automatically
determine the output format. Supported file formats depend on your
matplotlib backend. Most backends support png, pdf, ps, eps and
... | https://github.com/obspy/obspy/issues/913 | >>> >>> >>> Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/kasper/Downloads/waveform_plotting_tutorial_6.py", line 32, in <module>
time_down=True, linewidth=.25, grid_linewidth=.25)
File "/usr/lib/python2.7/site-packages/obspy-0.9.2-py2.7-linux-x86_64.egg/obspy/core/stream.py", line ... | ValueError |
def instBwith(data, fs, fk):
"""
Instantaneous bandwidth of a signal.
Computes the instantaneous bandwidth of the given data which can be
windowed or not. The instantaneous bandwidth is determined by the time
derivative of the envelope normalized by the envelope of the input data.
:type data: ... | def instBwith(data, fs, fk):
"""
Instantaneous bandwidth of a signal.
Computes the instantaneous bandwidth of the given data which can be
windowed or not. The instantaneous bandwidth is determined by the time
derivative of the envelope normalized by the envelope of the input data.
:type data: ... | https://github.com/obspy/obspy/issues/903 | In [1]: from obspy.signal import envelope, instBwith
In [2]: from obspy import read
In [3]: tr = read()[0]
In [4]: import matplotlib.pyplot as plt
In [5]: plt.figure(); plt.plot(instBwith(tr.data, 100, (-1.0, 0.0, 1.0)))
---------------------------------------------------------------------------
UnboundLocalError ... | UnboundLocalError |
def _getDateTime(self):
"""
Returns a Python datetime object.
:rtype: :class:`datetime.datetime`
:return: Python datetime object.
.. rubric:: Example
>>> dt = UTCDateTime(2008, 10, 1, 12, 30, 35, 45020)
>>> dt.datetime
datetime.datetime(2008, 10, 1, 12, 30, 35, 45020)
"""
# da... | def _getDateTime(self):
"""
Returns a Python datetime object.
:rtype: :class:`datetime.datetime`
:return: Python datetime object.
.. rubric:: Example
>>> dt = UTCDateTime(2008, 10, 1, 12, 30, 35, 45020)
>>> dt.datetime
datetime.datetime(2008, 10, 1, 12, 30, 35, 45020)
"""
# we... | https://github.com/obspy/obspy/issues/805 | Python 2.7.6 (default, Mar 22 2014, 22:59:38)
[GCC 4.8.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
from obspy.core import UTCDateTime
t = UTCDateTime("2014-05-23T22:35:30")
print t
2014-05-23T22:35:30.000000Z
t = UTCDateTime("2599-05-23T22:35:30")
print t
Traceback (most recent c... | ValueError |
def _getDateTime(self):
"""
Returns a Python datetime object.
:rtype: :class:`datetime.datetime`
:return: Python datetime object.
.. rubric:: Example
>>> dt = UTCDateTime(2008, 10, 1, 12, 30, 35, 45020)
>>> dt.datetime
datetime.datetime(2008, 10, 1, 12, 30, 35, 45020)
"""
# da... | def _getDateTime(self):
"""
Returns a Python datetime object.
:rtype: :class:`datetime.datetime`
:return: Python datetime object.
.. rubric:: Example
>>> dt = UTCDateTime(2008, 10, 1, 12, 30, 35, 45020)
>>> dt.datetime
datetime.datetime(2008, 10, 1, 12, 30, 35, 45020)
"""
# da... | https://github.com/obspy/obspy/issues/805 | Python 2.7.6 (default, Mar 22 2014, 22:59:38)
[GCC 4.8.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
from obspy.core import UTCDateTime
t = UTCDateTime("2014-05-23T22:35:30")
print t
2014-05-23T22:35:30.000000Z
t = UTCDateTime("2599-05-23T22:35:30")
print t
Traceback (most recent c... | ValueError |
def _getDateTime(self):
"""
Returns a Python datetime object.
:rtype: :class:`datetime.datetime`
:return: Python datetime object.
.. rubric:: Example
>>> dt = UTCDateTime(2008, 10, 1, 12, 30, 35, 45020)
>>> dt.datetime
datetime.datetime(2008, 10, 1, 12, 30, 35, 45020)
"""
# da... | def _getDateTime(self):
"""
Returns a Python datetime object.
:rtype: :class:`datetime.datetime`
:return: Python datetime object.
.. rubric:: Example
>>> dt = UTCDateTime(2008, 10, 1, 12, 30, 35, 45020)
>>> dt.datetime
datetime.datetime(2008, 10, 1, 12, 30, 35, 45020)
"""
retu... | https://github.com/obspy/obspy/issues/805 | Python 2.7.6 (default, Mar 22 2014, 22:59:38)
[GCC 4.8.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
from obspy.core import UTCDateTime
t = UTCDateTime("2014-05-23T22:35:30")
print t
2014-05-23T22:35:30.000000Z
t = UTCDateTime("2599-05-23T22:35:30")
print t
Traceback (most recent c... | ValueError |
def _get_lib_name(lib, add_extension_suffix):
"""
Helper function to get an architecture and Python version specific library
filename.
:type add_extension_suffix: bool
:param add_extension_suffix: Numpy distutils adds a suffix to
the filename we specify to build internally (as specified by ... | def _get_lib_name(lib, during_build):
"""
Helper function to get an architecture and Python version specific library
filename.
:type during_build: bool
:param during_build: Specifies whether the library name is requested during
building ObsPy or inside ObsPy code. Numpy distutils adds a suf... | https://github.com/obspy/obspy/issues/771 | $ python3 -c "import obspy.mseed"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "./obspy/__init__.py", line 43, in <module>
read.__doc__ % make_format_plugin_table("waveform", "read", numspaces=4)
File "./obspy/core/util/base.py", line 394, in make_format_plugin_table
"obspy.plugin.%s.%s"... | ImportError |
def configuration(parent_package="", top_path=None):
"""
Config function mainly used to compile C and Fortran code.
"""
config = Configuration("", parent_package, top_path)
# GSE2
path = os.path.join(SETUP_DIRECTORY, "obspy", "gse2", "src", "GSE_UTI")
files = [os.path.join(path, "gse_functi... | def configuration(parent_package="", top_path=None):
"""
Config function mainly used to compile C and Fortran code.
"""
config = Configuration("", parent_package, top_path)
# GSE2
path = os.path.join(SETUP_DIRECTORY, "obspy", "gse2", "src", "GSE_UTI")
files = [os.path.join(path, "gse_functi... | https://github.com/obspy/obspy/issues/771 | $ python3 -c "import obspy.mseed"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "./obspy/__init__.py", line 43, in <module>
read.__doc__ % make_format_plugin_table("waveform", "read", numspaces=4)
File "./obspy/core/util/base.py", line 394, in make_format_plugin_table
"obspy.plugin.%s.%s"... | ImportError |
def isQuakeML(filename):
"""
Checks whether a file is QuakeML format.
:type filename: str
:param filename: Name of the QuakeML file to be checked.
:rtype: bool
:return: ``True`` if QuakeML file.
.. rubric:: Example
>>> isQuakeML('/path/to/quakeml.xml') # doctest: +SKIP
True
"... | def isQuakeML(filename):
"""
Checks whether a file is QuakeML format.
:type filename: str
:param filename: Name of the QuakeML file to be checked.
:rtype: bool
:return: ``True`` if QuakeML file.
.. rubric:: Example
>>> isQuakeML('/path/to/quakeml.xml') # doctest: +SKIP
True
"... | https://github.com/obspy/obspy/issues/489 | Traceback (most recent call last):
File "/tmp/testrun/git/obspy/core/tests/test_util_xmlwrapper.py", line 49, in test_init
XMLParser(fh)
File "/tmp/testrun/git/obspy/core/util/xmlwrapper.py", line 73, in __init__
xml_doc.seek(0)
ValueError: I/O operation on closed file | ValueError |
def __init__(self, xml_doc, namespace=None):
"""
Initializes a XMLPaser object.
:type xml_doc: str, filename, file-like object, parsed XML document
:param xml_doc: XML document
:type namespace: str, optional
:param namespace: Document-wide default namespace. Defaults to ``''``.
"""
if i... | def __init__(self, xml_doc, namespace=None):
"""
Initializes a XMLPaser object.
:type xml_doc: str, filename, file-like object, parsed XML document
:param xml_doc: XML document
:type namespace: str, optional
:param namespace: Document-wide default namespace. Defaults to ``''``.
"""
if i... | https://github.com/obspy/obspy/issues/489 | Traceback (most recent call last):
File "/tmp/testrun/git/obspy/core/tests/test_util_xmlwrapper.py", line 49, in test_init
XMLParser(fh)
File "/tmp/testrun/git/obspy/core/util/xmlwrapper.py", line 73, in __init__
xml_doc.seek(0)
ValueError: I/O operation on closed file | ValueError |
def __init__(self, xml_doc, namespace=None):
"""
Initializes a XMLPaser object.
:type xml_doc: str, filename, file-like object, parsed XML document
:param xml_doc: XML document
:type namespace: str, optional
:param namespace: Document-wide default namespace. Defaults to ``''``.
"""
if i... | def __init__(self, xml_doc, namespace=None):
"""
Initializes a XMLPaser object.
:type xml_doc: str, filename, file-like object, parsed XML document
:param xml_doc: XML document
:type namespace: str, optional
:param namespace: Document-wide default namespace. Defaults to ``''``.
"""
if i... | https://github.com/obspy/obspy/issues/489 | Traceback (most recent call last):
File "/tmp/testrun/git/obspy/core/tests/test_util_xmlwrapper.py", line 49, in test_init
XMLParser(fh)
File "/tmp/testrun/git/obspy/core/util/xmlwrapper.py", line 73, in __init__
xml_doc.seek(0)
ValueError: I/O operation on closed file | ValueError |
def __setattr__(self, key, value):
# 内建属性不放入 key 中
if key.startswith("__") and key.endswith("__"):
super().__setattr__(key, value)
else:
self[key] = value
| def __setattr__(self, key, value):
self[key] = value
| https://github.com/Tencent/bk-sops/issues/1984 | 捕获未处理异常,异常具体堆栈->[Traceback (most recent call last):
File "/app/.heroku/python/lib/python3.6/site-packages/django/core/handlers/base.py", line 185, in _get_response
response = wrapped_callback(request, *callback_args, **callback_kwargs)
File "/app/blueapps/account/decorators.py", line 20, in wrapped_view
return view_fun... | KeyError |
def execute(self, data, parent_data):
executor = parent_data.get_one_of_inputs("executor")
biz_cc_id = parent_data.get_one_of_inputs("biz_cc_id")
supplier_account = parent_data.get_one_of_inputs("biz_supplier_account")
client = get_client_by_user(executor)
if parent_data.get_one_of_inputs("language"... | def execute(self, data, parent_data):
executor = parent_data.get_one_of_inputs("executor")
biz_cc_id = parent_data.get_one_of_inputs("biz_cc_id")
supplier_account = parent_data.get_one_of_inputs("biz_supplier_account")
client = settings.ESB_GET_CLIENT_BY_USER(executor)
if parent_data.get_one_of_inpu... | https://github.com/Tencent/bk-sops/issues/324 | Traceback (most recent call last):
File "/data/app/code/pipeline/engine/core/handlers/service_activity.py", line 77, in handle
success = element.execute(root_pipeline.data)
File "/data/app/code/pipeline/core/flow/activity.py", line 76, in execute
result = self.service.execute(self.data, parent_data)
File "/data/app/cod... | AttributeError |
def get_user_info(request):
client = get_client_by_user(request.user.username)
auth = getattr(client, settings.ESB_AUTH_COMPONENT_SYSTEM)
_get_user_info = getattr(auth, settings.ESB_AUTH_GET_USER_INFO)
user_info = _get_user_info({})
if user_info["result"]:
user_info["data"]["bk_supplier_acco... | def get_user_info(request):
client = get_client_by_request(request)
auth = getattr(client, settings.ESB_AUTH_COMPONENT_SYSTEM)
_get_user_info = getattr(auth, settings.ESB_AUTH_GET_USER_INFO)
user_info = _get_user_info({})
if "data" in user_info:
user_info["data"]["bk_supplier_account"] = 0
... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def process_view(self, request, view_func, view_args, view_kwargs):
"""
If a request path contains biz_cc_id parameter, check if current
user has perm view_business or return http 403.
"""
if getattr(view_func, "login_exempt", False):
return None
biz_cc_id = view_kwargs.get("biz_cc_id") ... | def process_view(self, request, view_func, view_args, view_kwargs):
"""
If a request path contains biz_cc_id parameter, check if current
user has perm view_business or return http 403.
"""
if getattr(view_func, "login_exempt", False):
return None
biz_cc_id = view_kwargs.get("biz_cc_id") ... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def _get_user_business_list(request, use_cache=True):
"""Get authorized business list for a exact username.
:param object request: django request object.
:param bool use_cache: (Optional)
"""
user = request.user
cache_key = "%s_get_user_business_list_%s" % (CACHE_PREFIX, user.username)
data... | def _get_user_business_list(request, use_cache=True):
"""Get authorized business list for a exact username.
:param object request: django request object.
:param bool use_cache: (Optional)
"""
user = request.user
cache_key = "%s_get_user_business_list_%s" % (CACHE_PREFIX, user.username)
data... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def _get_business_info(request, app_id, use_cache=True, use_maintainer=False):
"""Get detail infomations for a exact app_id.
@param object request: django request object.
@param int app_id: cc_id of core.business model.
@param use_maintainer: 使用运维身份请求
"""
username = request.user.username
bu... | def _get_business_info(request, app_id, use_cache=True, use_maintainer=False):
"""Get detail infomations for a exact app_id.
@param object request: django request object.
@param int app_id: cc_id of core.business model.
@param use_maintainer: 使用运维身份请求
"""
username = request.user.username
bu... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def get_job_instance_log(request, biz_cc_id):
client = get_client_by_user(request.user.username)
job_instance_id = request.GET.get("job_instance_id")
log_kwargs = {"bk_biz_id": biz_cc_id, "job_instance_id": job_instance_id}
log_result = client.job.get_job_instance_log(log_kwargs)
return JsonResponse... | def get_job_instance_log(request, biz_cc_id):
client = get_client_by_request(request)
job_instance_id = request.GET.get("job_instance_id")
log_kwargs = {"bk_biz_id": biz_cc_id, "job_instance_id": job_instance_id}
log_result = client.job.get_job_instance_log(log_kwargs)
return JsonResponse(log_result... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def cmdb_search_host(request, bk_biz_id, bk_supplier_account="", bk_supplier_id=0):
"""
@summary: 获取 CMDB 上业务的 IP 列表，以及 agent 状态等信息
@param request:
@param bk_biz_id: 业务 CMDB ID
@param bk_supplier_account: 业务开发商账号
@param bk_supplier_id: 业务开发商ID
@params fields: list 查询字段，默认只返回 bk_host_innerip、... | def cmdb_search_host(request, bk_biz_id, bk_supplier_account="", bk_supplier_id=0):
"""
@summary: 获取 CMDB 上业务的 IP 列表，以及 agent 状态等信息
@param request:
@param bk_biz_id: 业务 CMDB ID
@param bk_supplier_account: 业务开发商账号
@param bk_supplier_id: 业务开发商ID
@params fields: list 查询字段，默认只返回 bk_host_innerip、... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def cmdb_get_mainline_object_topo(request, bk_biz_id, bk_supplier_account=""):
"""
@summary: 获取配置平台业务拓扑模型
@param request:
@param bk_biz_id:
@param bk_supplier_account:
@return:
"""
kwargs = {
"bk_biz_id": bk_biz_id,
"bk_supplier_account": bk_supplier_account,
}
cl... | def cmdb_get_mainline_object_topo(request, bk_biz_id, bk_supplier_account=""):
"""
@summary: 获取配置平台业务拓扑模型
@param request:
@param bk_biz_id:
@param bk_supplier_account:
@return:
"""
kwargs = {
"bk_biz_id": bk_biz_id,
"bk_supplier_account": bk_supplier_account,
}
cl... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def cc_search_object_attribute(request, obj_id, biz_cc_id, supplier_account):
"""
@summary: 获取对象自定义属性
@param request:
@param biz_cc_id:
@return:
"""
client = get_client_by_user(request.user.username)
kwargs = {"bk_obj_id": obj_id, "bk_supplier_account": supplier_account}
cc_result = ... | def cc_search_object_attribute(request, obj_id, biz_cc_id, supplier_account):
"""
@summary: 获取对象自定义属性
@param request:
@param biz_cc_id:
@return:
"""
client = get_client_by_request(request)
kwargs = {"bk_obj_id": obj_id, "bk_supplier_account": supplier_account}
cc_result = client.cc.s... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def cc_search_create_object_attribute(request, obj_id, biz_cc_id, supplier_account):
client = get_client_by_user(request.user.username)
kwargs = {"bk_obj_id": obj_id, "bk_supplier_account": supplier_account}
cc_result = client.cc.search_object_attribute(kwargs)
if not cc_result["result"]:
messag... | def cc_search_create_object_attribute(request, obj_id, biz_cc_id, supplier_account):
client = get_client_by_request(request)
kwargs = {"bk_obj_id": obj_id, "bk_supplier_account": supplier_account}
cc_result = client.cc.search_object_attribute(kwargs)
if not cc_result["result"]:
message = handle_... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def cc_search_topo(request, obj_id, category, biz_cc_id, supplier_account):
"""
@summary: 查询对象拓扑
@param request:
@param biz_cc_id:
@return:
"""
client = get_client_by_user(request.user.username)
kwargs = {"bk_biz_id": biz_cc_id, "bk_supplier_account": supplier_account}
cc_result = cl... | def cc_search_topo(request, obj_id, category, biz_cc_id, supplier_account):
"""
@summary: 查询对象拓扑
@param request:
@param biz_cc_id:
@return:
"""
client = get_client_by_request(request)
kwargs = {"bk_biz_id": biz_cc_id, "bk_supplier_account": supplier_account}
cc_result = client.cc.sea... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def job_get_script_list(request, biz_cc_id):
"""
查询业务脚本列表
:param request:
:param biz_cc_id:
:return:
"""
# 查询脚本列表
client = get_client_by_user(request.user.username)
script_type = request.GET.get("type")
kwargs = {
"bk_biz_id": biz_cc_id,
"is_public": True if scrip... | def job_get_script_list(request, biz_cc_id):
"""
查询业务脚本列表
:param request:
:param biz_cc_id:
:return:
"""
# 查询脚本列表
client = get_client_by_request(request)
script_type = request.GET.get("type")
kwargs = {
"bk_biz_id": biz_cc_id,
"is_public": True if script_type == "... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def job_get_job_tasks_by_biz(request, biz_cc_id):
client = get_client_by_user(request.user.username)
job_result = client.job.get_job_list({"bk_biz_id": biz_cc_id})
if not job_result["result"]:
message = _(
"查询作业平台(JOB)的作业模板[app_id=%s]接口job.get_task返回失败: %s"
) % (biz_cc_id, job_re... | def job_get_job_tasks_by_biz(request, biz_cc_id):
client = get_client_by_request(request)
job_result = client.job.get_job_list({"bk_biz_id": biz_cc_id})
if not job_result["result"]:
message = _(
"查询作业平台(JOB)的作业模板[app_id=%s]接口job.get_task返回失败: %s"
) % (biz_cc_id, job_result["messa... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def job_get_job_task_detail(request, biz_cc_id, task_id):
client = get_client_by_user(request.user.username)
job_result = client.job.get_job_detail(
{"bk_biz_id": biz_cc_id, "bk_job_id": task_id}
)
if not job_result["result"]:
message = _(
"查询作业平台(JOB)的作业模板详情[app_id=%s]接口job.... | def job_get_job_task_detail(request, biz_cc_id, task_id):
client = get_client_by_request(request)
job_result = client.job.get_job_detail(
{"bk_biz_id": biz_cc_id, "bk_job_id": task_id}
)
if not job_result["result"]:
message = _(
"查询作业平台(JOB)的作业模板详情[app_id=%s]接口job.get_task_de... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def get_bk_user(request):
bkuser = None
if request.weixin_user and not isinstance(request.weixin_user, AnonymousUser):
user_model = get_user_model()
try:
user_property = UserProperty.objects.get(
key="wx_userid", value=request.weixin_user.userid
)
... | def get_bk_user(request):
bkuser = None
if request.weixin_user and not isinstance(request.weixin_user, AnonymousUser):
try:
user_property = UserProperty.objects.get(
key="wx_userid", value=request.weixin_user.userid
)
bkuser = user_property.user
... | https://github.com/Tencent/bk-sops/issues/20 | ------STARTING: Migrate Database------
Traceback (most recent call last):
File "manage.py", line 27, in <module>
execute_from_command_line(sys.argv)
File "/cache/.bk/env/lib/python2.7/site-packages/django/core/management/__init__.py", line 354, in execute_from_command_line
utility.execute()
File "/cache/.bk/env/lib/pyt... | ImportError |
def fit(self, dataset: Dataset):
"""Calculates statistics for this workflow on the input dataset
Parameters
-----------
dataset: Dataset
The input dataset to calculate statistics for. If there is a train/test split this
data should be the training dataset only.
"""
self._clear_w... | def fit(self, dataset: Dataset):
"""Calculates statistics for this workflow on the input dataset
Parameters
-----------
dataset: Dataset
The input dataset to calculate statistics for. If there is a train/test split this
data should be the training dataset only.
"""
self._clear_w... | https://github.com/NVIDIA/NVTabular/issues/598 | E0224 15:58:10.330248 178 model_repository_manager.cc:963] failed to load 'amazonreview_tf' version 1: Internal: unable to create stream: the provided PTX was compiled with an unsupported toolchain.
/nvtabular/nvtabular/workflow.py:236: UserWarning: Loading workflow generated with cudf version 0+untagged.1.gbd321d1 - b... | TypeError |
def main(args):
"""Multi-GPU Criteo/DLRM Preprocessing Benchmark
This benchmark is designed to measure the time required to preprocess
the Criteo (1TB) dataset for Facebook’s DLRM model. The user must specify
the path of the raw dataset (using the `--data-path` flag), as well as the
output directo... | def main(args):
"""Multi-GPU Criteo/DLRM Preprocessing Benchmark
This benchmark is designed to measure the time required to preprocess
the Criteo (1TB) dataset for Facebook’s DLRM model. The user must specify
the path of the raw dataset (using the `--data-path` flag), as well as the
output directo... | https://github.com/NVIDIA/NVTabular/issues/557 | (rapids) root@dafff4b22f48:/nvtabular# python examples/dask-nvtabular-criteo-benchmark.py -d 0,1,2,3,4,5,6,7 --data-path gs://merlin-datasets/crit_int_pq --out-path gs://merlin-datasets/output --freq-limit 0 --part-mem-frac 0.12 --device-limit-f
rac 0.7 --device-pool-frac 0.8
distributed.worker - WARNING - Compute Fa... | FileNotFoundError |
def __init__(self, out_dir, **kwargs):
super().__init__(out_dir, **kwargs)
self.data_paths = []
self.data_files = []
self.data_writers = []
self.data_bios = []
self._lock = threading.RLock()
self.pwriter = self._pwriter
self.pwriter_kwargs = {}
| def __init__(self, out_dir, **kwargs):
super().__init__(out_dir, **kwargs)
self.data_paths = []
self.data_writers = []
self.data_bios = []
self._lock = threading.RLock()
self.pwriter = self._pwriter
self.pwriter_kwargs = {}
| https://github.com/NVIDIA/NVTabular/issues/557 | (rapids) root@dafff4b22f48:/nvtabular# python examples/dask-nvtabular-criteo-benchmark.py -d 0,1,2,3,4,5,6,7 --data-path gs://merlin-datasets/crit_int_pq --out-path gs://merlin-datasets/output --freq-limit 0 --part-mem-frac 0.12 --device-limit-f
rac 0.7 --device-pool-frac 0.8
distributed.worker - WARNING - Compute Fa... | FileNotFoundError |
def _append_writer(self, path, schema=None, add_args=None, add_kwargs=None):
# Add additional args and kwargs
_args = add_args or []
_kwargs = tlz.merge(self.pwriter_kwargs, add_kwargs or {})
if self.bytes_io:
bio = BytesIO()
self.data_bios.append(bio)
self.data_writers.append(s... | def _append_writer(self, path, schema=None, add_args=None, add_kwargs=None):
# Add additional args and kwargs
_args = add_args or []
_kwargs = tlz.merge(self.pwriter_kwargs, add_kwargs or {})
if self.bytes_io:
bio = BytesIO()
self.data_bios.append(bio)
self.data_writers.append(s... | https://github.com/NVIDIA/NVTabular/issues/557 | (rapids) root@dafff4b22f48:/nvtabular# python examples/dask-nvtabular-criteo-benchmark.py -d 0,1,2,3,4,5,6,7 --data-path gs://merlin-datasets/crit_int_pq --out-path gs://merlin-datasets/output --freq-limit 0 --part-mem-frac 0.12 --device-limit-f
rac 0.7 --device-pool-frac 0.8
distributed.worker - WARNING - Compute Fa... | FileNotFoundError |
def _close_writers(self):
md_dict = {}
for writer, path in zip(self.data_writers, self.data_paths):
fn = path.split(self.fs.sep)[-1]
md_dict[fn] = writer.close(metadata_file_path=fn)
for f in self.data_files:
f.close()
return md_dict
| def _close_writers(self):
md_dict = {}
for writer, path in zip(self.data_writers, self.data_paths):
fn = path.split(self.fs.sep)[-1]
md_dict[fn] = writer.close(metadata_file_path=fn)
return md_dict
| https://github.com/NVIDIA/NVTabular/issues/557 | (rapids) root@dafff4b22f48:/nvtabular# python examples/dask-nvtabular-criteo-benchmark.py -d 0,1,2,3,4,5,6,7 --data-path gs://merlin-datasets/crit_int_pq --out-path gs://merlin-datasets/output --freq-limit 0 --part-mem-frac 0.12 --device-limit-f
rac 0.7 --device-pool-frac 0.8
distributed.worker - WARNING - Compute Fa... | FileNotFoundError |
def fetch_table_data(
table_cache,
path,
cache="disk",
cats_only=False,
reader=None,
columns=None,
**kwargs,
):
"""Utility to retrieve a cudf DataFrame from a cache (and add the
DataFrame to a cache if the element is missing). Note that `cats_only=True`
results in optimized logi... | def fetch_table_data(
table_cache,
path,
cache="disk",
cats_only=False,
reader=None,
columns=None,
**kwargs,
):
"""Utility to retrieve a cudf DataFrame from a cache (and add the
DataFrame to a cache if the element is missing). Note that `cats_only=True`
results in optimized logi... | https://github.com/NVIDIA/NVTabular/issues/557 | (rapids) root@dafff4b22f48:/nvtabular# python examples/dask-nvtabular-criteo-benchmark.py -d 0,1,2,3,4,5,6,7 --data-path gs://merlin-datasets/crit_int_pq --out-path gs://merlin-datasets/output --freq-limit 0 --part-mem-frac 0.12 --device-limit-f
rac 0.7 --device-pool-frac 0.8
distributed.worker - WARNING - Compute Fa... | FileNotFoundError |
def _chunkwise_moments(df):
df2 = cudf.DataFrame()
for col in df.columns:
df2[col] = df[col].astype("float64").pow(2)
vals = {
"df-count": df.count().to_frame().transpose(),
"df-sum": df.sum().astype("float64").to_frame().transpose(),
"df2-sum": df2.sum().to_frame().transpose... | def _chunkwise_moments(df):
df2 = cudf.DataFrame()
for col in df.columns:
df2[col] = df[col].astype("float64").pow(2)
vals = {
"df-count": df.count().to_frame().transpose(),
"df-sum": df.sum().to_frame().transpose(),
"df2-sum": df2.sum().to_frame().transpose(),
}
# NO... | https://github.com/NVIDIA/NVTabular/issues/432 | /opt/conda/envs/rapids/lib/python3.7/site-packages/pandas/core/series.py:726: RuntimeWarning: invalid value encountered in sqrt
result = getattr(ufunc, method)(*inputs, **kwargs)
---------------------------------------------------------------------------
ValueError Traceback (most recent ... | ValueError |
def to_ddf(self, columns=None):
return dask_cudf.read_parquet(
self.paths,
columns=columns,
# can't omit reading the index in if we aren't being passed columns
index=None if columns is None else False,
gather_statistics=False,
split_row_groups=self.row_groups_per_part... | def to_ddf(self, columns=None):
return dask_cudf.read_parquet(
self.paths,
columns=columns,
index=False,
gather_statistics=False,
split_row_groups=self.row_groups_per_part,
storage_options=self.storage_options,
)
| https://github.com/NVIDIA/NVTabular/issues/409 | ---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-13-b133e2b51cbf> in <module>
2 valid_dataset = nvt.Dataset(OUTPUT_BUCKET_FOLDER+'valid_gdf.parquet', part_mem_fraction=0.12)
3
----> 4 workflow.apply(tra... | ValueError |
def get_ddf(self):
if self.ddf is None:
raise ValueError("No dask_cudf frame available.")
elif isinstance(self.ddf, Dataset):
# Right now we can't distinguish between input columns and generated columns
# in the dataset, we don't limit the columm set right now in the to_ddf call
... | def get_ddf(self):
if self.ddf is None:
raise ValueError("No dask_cudf frame available.")
elif isinstance(self.ddf, Dataset):
columns = self.columns_ctx["all"]["base"]
return self.ddf.to_ddf(columns=columns, shuffle=self._shuffle_parts)
return self.ddf
| https://github.com/NVIDIA/NVTabular/issues/409 | ---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-13-b133e2b51cbf> in <module>
2 valid_dataset = nvt.Dataset(OUTPUT_BUCKET_FOLDER+'valid_gdf.parquet', part_mem_fraction=0.12)
3
----> 4 workflow.apply(tra... | ValueError |
def add_data(self, gdf):
# Populate columns idxs
if not self.col_idx:
for i, x in enumerate(gdf.columns.values):
self.col_idx[str(x)] = i
# list columns in cudf don't currently support chunked writing in parquet.
# hack around this by just writing a single file with this partition
... | def add_data(self, gdf):
# Populate columns idxs
if not self.col_idx:
for i, x in enumerate(gdf.columns.values):
self.col_idx[str(x)] = i
# list columns in cudf don't currently support chunked writing in parquet.
# hack around this by just writing a single file with this partition
... | https://github.com/NVIDIA/NVTabular/issues/381 | ---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-19-f93c44c3b381> in <module>
11 proc.add_preprocess(JoinExternal(df_grouped, on= ['doc_id'], on_ext= ['doc_id'], kind_ext=kind_ext, columns_ext=columns_e... | AttributeError |
def __init__(
self,
paths,
part_size,
storage_options,
row_groups_per_part=None,
legacy=False,
batch_size=None,
):
# TODO: Improve dask_cudf.read_parquet performance so that
# this class can be slimmed down.
super().__init__(paths, part_size, storage_options)
self.batch_size ... | def __init__(
self,
paths,
part_size,
storage_options,
row_groups_per_part=None,
legacy=False,
batch_size=None,
):
# TODO: Improve dask_cudf.read_parquet performance so that
# this class can be slimmed down.
super().__init__(paths, part_size, storage_options)
self.batch_size ... | https://github.com/NVIDIA/NVTabular/issues/363 | Traceback (most recent call last):
File "main.py", line 106, in <module>
main(args)
File "main.py", line 61, in main
train_paths, engine="parquet", part_mem_fraction=float(args.gpu_mem_frac)
File "/root/miniconda/lib/python3.7/site-packages/nvtabular/io/dataset.py", line 224, in __init__
paths, part_size, storage_optio... | AttributeError |
def __init__(self, *args, **kwargs):
super().__init__(*args)
self._meta = {}
self.csv_kwargs = kwargs
self.names = self.csv_kwargs.get("names", None)
# CSV reader needs a list of files
# (Assume flat directory structure if this is a dir)
if len(self.paths) == 1 and self.fs.isdir(self.paths[0... | def __init__(self, *args, **kwargs):
super().__init__(*args)
self._meta = {}
self.names = kwargs.pop("names", None)
self.csv_kwargs = kwargs
# CSV reader needs a list of files
# (Assume flat directory structure if this is a dir)
if len(self.paths) == 1 and self.fs.isdir(self.paths[0]):
... | https://github.com/NVIDIA/NVTabular/issues/85 | AttributeErrorTraceback (most recent call last)
<ipython-input-1-84910288ec3f> in <module>
44 del gdf
45 path_out = '/raid/criteo/tests/jp_csv_orig/'
---> 46 file_to_pq(train_set, 'csv', output_folder=path_out, cols=cols, dtypes=dtypes)
<ipython-input-1-84910288ec3f> in file_to_pq(target_files, file_type, outp... | AttributeError |
def to_ddf(self, columns=None):
return dask_cudf.read_csv(self.paths, chunksize=self.part_size, **self.csv_kwargs)[
columns
]
| def to_ddf(self, columns=None):
return dask_cudf.read_csv(
self.paths, names=self.names, chunksize=self.part_size, **self.csv_kwargs
)[columns]
| https://github.com/NVIDIA/NVTabular/issues/85 | AttributeErrorTraceback (most recent call last)
<ipython-input-1-84910288ec3f> in <module>
44 del gdf
45 path_out = '/raid/criteo/tests/jp_csv_orig/'
---> 46 file_to_pq(train_set, 'csv', output_folder=path_out, cols=cols, dtypes=dtypes)
<ipython-input-1-84910288ec3f> in file_to_pq(target_files, file_type, outp... | AttributeError |
def _predict(self, X):
"""Collect results from clf.predict calls."""
if self.refit:
return np.asarray([clf.predict(X) for clf in self.clfs_]).T
else:
return np.asarray([self.le_.transform(clf.predict(X)) for clf in self.clfs_]).T
| def _predict(self, X):
"""Collect results from clf.predict calls."""
return np.asarray([clf.predict(X) for clf in self.clfs_]).T
| https://github.com/rasbt/mlxtend/issues/321 | Traceback (most recent call last):
File "/_mlxtend_bug/reproduce.py", line 16, in <module>
print(clf.predict(test))
File "/venv/py3/lib/python3.4/site-packages/mlxtend/classifier/ensemble_vote.py", line 197, in predict
arr=predictions)
File "/venv/py3/lib/python3.4/site-packages/numpy/lib/shape_base.py", line 132, in a... | TypeError |
def transform(
self,
xx: Any,
yy: Any,
zz: Any = None,
tt: Any = None,
radians: bool = False,
errcheck: bool = False,
direction: Union[TransformDirection, str] = TransformDirection.FORWARD,
) -> Any:
"""
Transform points between two coordinate systems.
.. versionadded:: 2.1.... | def transform(
self,
xx: Any,
yy: Any,
zz: Any = None,
tt: Any = None,
radians: bool = False,
errcheck: bool = False,
direction: Union[TransformDirection, str] = TransformDirection.FORWARD,
) -> Any:
"""
Transform points between two coordinate systems.
.. versionadded:: 2.1.... | https://github.com/pyproj4/pyproj/issues/565 | Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.7/site-packages/pyproj/transformer.py", line 446, in transform
errcheck=errcheck,
File "pyproj/_transformer.pyx", line 463, in pyproj._transformer._Transformer._transform
pyproj.exceptions.ProjError: transform error: lat... | pyproj.exceptions.ProjError |
def itransform(
self,
points: Any,
switch: bool = False,
time_3rd: bool = False,
radians: bool = False,
errcheck: bool = False,
direction: Union[TransformDirection, str] = TransformDirection.FORWARD,
) -> Iterator[Iterable]:
"""
Iterator/generator version of the function pyproj.Trans... | def itransform(
self,
points: Any,
switch: bool = False,
time_3rd: bool = False,
radians: bool = False,
errcheck: bool = False,
direction: Union[TransformDirection, str] = TransformDirection.FORWARD,
) -> Iterator[Iterable]:
"""
Iterator/generator version of the function pyproj.Trans... | https://github.com/pyproj4/pyproj/issues/565 | Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.7/site-packages/pyproj/transformer.py", line 446, in transform
errcheck=errcheck,
File "pyproj/_transformer.pyx", line 463, in pyproj._transformer._Transformer._transform
pyproj.exceptions.ProjError: transform error: lat... | pyproj.exceptions.ProjError |
def from_user_input(value: Any) -> "CRS":
"""
Initialize a CRS class instance with:
- PROJ string
- Dictionary of PROJ parameters
- PROJ keyword arguments for parameters
- JSON string with PROJ parameters
- CRS WKT string
- An authority string [i.e. 'epsg:4326']
- An EP... | def from_user_input(value: str) -> "CRS":
"""
Initialize a CRS class instance with:
- PROJ string
- Dictionary of PROJ parameters
- PROJ keyword arguments for parameters
- JSON string with PROJ parameters
- CRS WKT string
- An authority string [i.e. 'epsg:4326']
- An EP... | https://github.com/pyproj4/pyproj/issues/554 | import pyproj
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
~/scipy/repos/pyproj/pyproj/_crs.pyx in pyproj._crs.Datum.from_name()
KeyError: 'URN:OGC:DEF:DATUM:EPSG::6326'
During handling of the above exception, ... | KeyError |
def __init__(
self,
name: str = "undefined",
datum: Any = "urn:ogc:def:datum:EPSG::6326",
ellipsoidal_cs: Any = None,
) -> None:
"""
Parameters
----------
name: str, optional
Name of the CRS. Default is undefined.
datum: Any, optional
Anything accepted by :meth:`pypro... | def __init__(
self,
name: str = "undefined",
datum: Any = "urn:ogc:def:datum:EPSG::6326",
ellipsoidal_cs: Any = Ellipsoidal2DCS(),
) -> None:
"""
Parameters
----------
name: str, optional
Name of the CRS. Default is undefined.
datum: Any, optional
Anything accepted by... | https://github.com/pyproj4/pyproj/issues/554 | import pyproj
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
~/scipy/repos/pyproj/pyproj/_crs.pyx in pyproj._crs.Datum.from_name()
KeyError: 'URN:OGC:DEF:DATUM:EPSG::6326'
During handling of the above exception, ... | KeyError |
def __init__(
self,
base_crs: Any,
conversion: Any,
ellipsoidal_cs: Any = None,
name: str = "undefined",
) -> None:
"""
Parameters
----------
base_crs: Any
Input to create the Geodetic CRS, a :class:`GeographicCRS` or
anything accepted by :meth:`pyproj.crs.CRS.from_us... | def __init__(
self,
base_crs: Any,
conversion: Any,
ellipsoidal_cs: Any = Ellipsoidal2DCS(),
name: str = "undefined",
) -> None:
"""
Parameters
----------
base_crs: Any
Input to create the Geodetic CRS, a :class:`GeographicCRS` or
anything accepted by :meth:`pyproj.cr... | https://github.com/pyproj4/pyproj/issues/554 | import pyproj
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
~/scipy/repos/pyproj/pyproj/_crs.pyx in pyproj._crs.Datum.from_name()
KeyError: 'URN:OGC:DEF:DATUM:EPSG::6326'
During handling of the above exception, ... | KeyError |
def __init__(
self,
conversion: Any,
name: str = "undefined",
cartesian_cs: Any = None,
geodetic_crs: Any = None,
) -> None:
"""
Parameters
----------
conversion: Any
Anything accepted by :meth:`pyproj.crs.CoordinateSystem.from_user_input`
or a conversion from :ref:`c... | def __init__(
self,
conversion: Any,
name: str = "undefined",
cartesian_cs: Any = Cartesian2DCS(),
geodetic_crs: Any = GeographicCRS(),
) -> None:
"""
Parameters
----------
conversion: Any
Anything accepted by :meth:`pyproj.crs.CoordinateSystem.from_user_input`
or a c... | https://github.com/pyproj4/pyproj/issues/554 | import pyproj
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
~/scipy/repos/pyproj/pyproj/_crs.pyx in pyproj._crs.Datum.from_name()
KeyError: 'URN:OGC:DEF:DATUM:EPSG::6326'
During handling of the above exception, ... | KeyError |
def __init__(
self,
name: str,
datum: Any,
vertical_cs: Any = None,
geoid_model: Optional[str] = None,
) -> None:
"""
Parameters
----------
name: str
The name of the Vertical CRS (e.g. NAVD88 height).
datum: Any
Anything accepted by :meth:`pyproj.crs.Datum.from_us... | def __init__(
self,
name: str,
datum: Any,
vertical_cs: Any = VerticalCS(),
geoid_model: str = None,
) -> None:
"""
Parameters
----------
name: str
The name of the Vertical CRS (e.g. NAVD88 height).
datum: Any
Anything accepted by :meth:`pyproj.crs.Datum.from_user... | https://github.com/pyproj4/pyproj/issues/554 | import pyproj
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
~/scipy/repos/pyproj/pyproj/_crs.pyx in pyproj._crs.Datum.from_name()
KeyError: 'URN:OGC:DEF:DATUM:EPSG::6326'
During handling of the above exception, ... | KeyError |
def set_data_dir(proj_data_dir):
"""
Set the data directory for PROJ to use.
Parameters
----------
proj_data_dir: str
The path to rhe PROJ data directory.
"""
global _USER_PROJ_DATA
_USER_PROJ_DATA = proj_data_dir
# reset search paths
from pyproj._datadir import PYPROJ_C... | def set_data_dir(proj_data_dir):
"""
Set the data directory for PROJ to use.
Parameters
----------
proj_data_dir: str
The path to rhe PROJ data directory.
"""
global _USER_PROJ_DATA
_USER_PROJ_DATA = proj_data_dir
# reset search paths
from pyproj._datadir import PYPROJ_C... | https://github.com/pyproj4/pyproj/issues/415 | Traceback (most recent call last):
File "<stdin>", line 1, in <module>
...
File "/opt/conda/lib/python3.7/site-packages/geopandas/geodataframe.py", line 459, in to_crs
geom = df.geometry.to_crs(crs=crs, epsg=epsg)
File "/opt/conda/lib/python3.7/site-packages/geopandas/geoseries.py", line 304, in to_crs
proj_in = pyproj... | pyproj.exceptions.DataDirError |
def set_data_dir(proj_data_dir):
"""
Set the data directory for PROJ to use.
Parameters
----------
proj_data_dir: str
The path to rhe PROJ data directory.
"""
global _USER_PROJ_DATA
_USER_PROJ_DATA = proj_data_dir
# reset search paths
from pyproj._datadir import PYPROJ_C... | def set_data_dir(proj_data_dir):
"""
Set the data directory for PROJ to use.
Parameters
----------
proj_data_dir: str
The path to rhe PROJ data directory.
"""
global _USER_PROJ_DATA
global _VALIDATED_PROJ_DATA
_USER_PROJ_DATA = proj_data_dir
# set to none to re-validate
... | https://github.com/pyproj4/pyproj/issues/374 | 97%|█████████████████████████████████▊ | 88243/91210 [00:26<00:00, 6190.94it/s]
CRSs instantiated: 507
CRSs instantiated (cache hits included): 88603
Transformers instantiated: 502
Transformers instantiated (cache hits included): 88389
---------------------------------------------------------------------------
ProjErro... | ProjError |
def get_data_dir():
"""
The order of preference for the data directory is:
1. The one set by pyproj.datadir.set_data_dir (if exists & valid)
2. The internal proj directory (if exists & valid)
3. The directory in PROJ_LIB (if exists & valid)
4. The directory on the PATH (if exists & valid)
... | def get_data_dir():
"""
The order of preference for the data directory is:
1. The one set by pyproj.datadir.set_data_dir (if exists & valid)
2. The internal proj directory (if exists & valid)
3. The directory in PROJ_LIB (if exists & valid)
4. The directory on the PATH (if exists & valid)
... | https://github.com/pyproj4/pyproj/issues/374 | 97%|█████████████████████████████████▊ | 88243/91210 [00:26<00:00, 6190.94it/s]
CRSs instantiated: 507
CRSs instantiated (cache hits included): 88603
Transformers instantiated: 502
Transformers instantiated (cache hits included): 88389
---------------------------------------------------------------------------
ProjErro... | ProjError |
def from_proj(proj_from, proj_to, skip_equivalent=False, always_xy=False):
"""Make a Transformer from a :obj:`~pyproj.proj.Proj` or input used to create one.
Parameters
----------
proj_from: :obj:`~pyproj.proj.Proj` or input used to create one
Projection of input data.
proj_to: :obj:`~pypro... | def from_proj(proj_from, proj_to, skip_equivalent=False, always_xy=False):
"""Make a Transformer from a :obj:`~pyproj.proj.Proj` or input used to create one.
Parameters
----------
proj_from: :obj:`~pyproj.proj.Proj` or input used to create one
Projection of input data.
proj_to: :obj:`~pypro... | https://github.com/pyproj4/pyproj/issues/321 | In [4]: t = pyproj.Transformer()
In [5]: t
Out[5]: <pyproj.transformer.Transformer at 0x7fd75ff9b860>
In [6]: t.transform(0, 0)
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-6-65405fa99360> in <mod... | AttributeError |
def from_crs(crs_from, crs_to, skip_equivalent=False, always_xy=False):
"""Make a Transformer from a :obj:`~pyproj.crs.CRS` or input used to create one.
Parameters
----------
crs_from: ~pyproj.crs.CRS or input used to create one
Projection of input data.
crs_to: ~pyproj.crs.CRS or input use... | def from_crs(crs_from, crs_to, skip_equivalent=False, always_xy=False):
"""Make a Transformer from a :obj:`~pyproj.crs.CRS` or input used to create one.
Parameters
----------
crs_from: ~pyproj.crs.CRS or input used to create one
Projection of input data.
crs_to: ~pyproj.crs.CRS or input use... | https://github.com/pyproj4/pyproj/issues/321 | In [4]: t = pyproj.Transformer()
In [5]: t
Out[5]: <pyproj.transformer.Transformer at 0x7fd75ff9b860>
In [6]: t.transform(0, 0)
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-6-65405fa99360> in <mod... | AttributeError |
def from_pipeline(proj_pipeline):
"""Make a Transformer from a PROJ pipeline string.
https://proj4.org/operations/pipeline.html
Parameters
----------
proj_pipeline: str
Projection pipeline string.
Returns
-------
~Transformer
"""
return Transformer(_Transformer.from_p... | def from_pipeline(proj_pipeline):
"""Make a Transformer from a PROJ pipeline string.
https://proj4.org/operations/pipeline.html
Parameters
----------
proj_pipeline: str
Projection pipeline string.
Returns
-------
~Transformer
"""
transformer = Transformer()
transf... | https://github.com/pyproj4/pyproj/issues/321 | In [4]: t = pyproj.Transformer()
In [5]: t
Out[5]: <pyproj.transformer.Transformer at 0x7fd75ff9b860>
In [6]: t.transform(0, 0)
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-6-65405fa99360> in <mod... | AttributeError |
def _dict2string(projparams):
# convert a dict to a proj4 string.
pjargs = []
proj_inserted = False
for key, value in projparams.items():
# the towgs84 as list
if isinstance(value, (list, tuple)):
value = ",".join([str(val) for val in value])
# issue 183 (+ no_rot)
... | def _dict2string(projparams):
# convert a dict to a proj4 string.
pjargs = []
for key, value in projparams.items():
# the towgs84 as list
if isinstance(value, (list, tuple)):
value = ",".join([str(val) for val in value])
# issue 183 (+ no_rot)
if value is None or ... | https://github.com/pyproj4/pyproj/issues/270 | from pyproj import Proj
Proj({'a': 6371229.0, 'b': 6371229.0, 'lon_0': -10.0, 'o_lat_p': 30.0, 'o_lon_p': 0.0, 'o_proj': 'longlat', 'proj'
: 'ob_tran'})
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File ".../lib/python3.7/site-packages/pyproj/proj.py", line 303, in __init__
cstrencode(self.crs... | AttributeError |
def __init__(self, projparams=None, preserve_units=True, **kwargs):
"""
initialize a Proj class instance.
See the proj documentation (https://github.com/OSGeo/proj.4/wiki)
for more information about projection parameters.
Parameters
----------
projparams: int, str, dict, pyproj.CRS
... | def __init__(self, projparams=None, preserve_units=True, **kwargs):
"""
initialize a Proj class instance.
See the proj documentation (https://github.com/OSGeo/proj.4/wiki)
for more information about projection parameters.
Parameters
----------
projparams: int, str, dict, pyproj.CRS
... | https://github.com/pyproj4/pyproj/issues/270 | from pyproj import Proj
Proj({'a': 6371229.0, 'b': 6371229.0, 'lon_0': -10.0, 'o_lat_p': 30.0, 'o_lon_p': 0.0, 'o_proj': 'longlat', 'proj'
: 'ob_tran'})
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File ".../lib/python3.7/site-packages/pyproj/proj.py", line 303, in __init__
cstrencode(self.crs... | AttributeError |
def Kuf_conv_patch(inducing_variable, kernel, Xnew):
Xp = kernel.get_patches(Xnew) # [N, num_patches, patch_len]
bigKzx = kernel.base_kernel.K(
inducing_variable.Z, Xp
) # [M, N, P] -- thanks to broadcasting of kernels
Kzx = tf.reduce_sum(
bigKzx * kernel.weights if hasattr(kernel, "we... | def Kuf_conv_patch(feat, kern, Xnew):
Xp = kern.get_patches(Xnew) # [N, num_patches, patch_len]
bigKzx = kern.base_kernel.K(
feat.Z, Xp
) # [M, N, P] -- thanks to broadcasting of kernels
Kzx = tf.reduce_sum(
bigKzx * kern.weights if hasattr(kern, "weights") else bigKzx, [2]
)
r... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def Kuu_kernel_inducingpoints(
inducing_variable: InducingPoints, kernel: Kernel, *, jitter=0.0
):
Kzz = kernel(inducing_variable.Z)
Kzz += jitter * tf.eye(inducing_variable.num_inducing, dtype=Kzz.dtype)
return Kzz
| def Kuu_kernel_inducingpoints(
inducing_variable: InducingPoints, kernel: Kernel, *, jitter=0.0
):
Kzz = kernel(inducing_variable.Z)
Kzz += jitter * tf.eye(len(inducing_variable), dtype=Kzz.dtype)
return Kzz
| https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def Kuu_sqexp_multiscale(
inducing_variable: Multiscale, kernel: SquaredExponential, *, jitter=0.0
):
Zmu, Zlen = kernel.slice(inducing_variable.Z, inducing_variable.scales)
idlengthscales2 = tf.square(kernel.lengthscales + Zlen)
sc = tf.sqrt(
idlengthscales2[None, ...]
+ idlengthscales2... | def Kuu_sqexp_multiscale(
inducing_variable: Multiscale, kernel: SquaredExponential, *, jitter=0.0
):
Zmu, Zlen = kernel.slice(inducing_variable.Z, inducing_variable.scales)
idlengthscales2 = tf.square(kernel.lengthscales + Zlen)
sc = tf.sqrt(
idlengthscales2[None, ...]
+ idlengthscales2... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def Kuu_conv_patch(inducing_variable, kernel, jitter=0.0):
return kernel.base_kernel.K(inducing_variable.Z) + jitter * tf.eye(
inducing_variable.num_inducing, dtype=default_float()
)
| def Kuu_conv_patch(feat, kern, jitter=0.0):
return kern.base_kernel.K(feat.Z) + jitter * tf.eye(
len(feat), dtype=default_float()
)
| https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def _Kuu(
inducing_variable: FallbackSeparateIndependentInducingVariables,
kernel: Union[SeparateIndependent, LinearCoregionalization],
*,
jitter=0.0,
):
Kmms = [
Kuu(f, k)
for f, k in zip(inducing_variable.inducing_variable_list, kernel.kernels)
]
Kmm = tf.stack(Kmms, axis=0... | def _Kuu(
inducing_variable: FallbackSeparateIndependentInducingVariables,
kernel: Union[SeparateIndependent, LinearCoregionalization],
*,
jitter=0.0,
):
Kmms = [
Kuu(f, k)
for f, k in zip(inducing_variable.inducing_variable_list, kernel.kernels)
]
Kmm = tf.stack(Kmms, axis=0... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def __init__(self, Z: TensorData, name: Optional[str] = None):
"""
:param Z: the initial positions of the inducing points, size [M, D]
"""
super().__init__(name=name)
if not isinstance(Z, (tf.Variable, tfp.util.TransformedVariable)):
Z = Parameter(Z)
self.Z = Z
| def __init__(self, Z: TensorData, name: Optional[str] = None):
"""
:param Z: the initial positions of the inducing points, size [M, D]
"""
super().__init__(name=name)
self.Z = Parameter(Z, dtype=default_float())
| https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def __len__(self) -> int:
return tf.shape(self.Z)[0]
| def __len__(self) -> int:
return self.Z.shape[0]
| https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def __len__(self) -> int:
return self.inducing_variable.num_inducing
| def __len__(self) -> int:
return len(self.inducing_variable)
| https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def __len__(self) -> int:
# TODO(st--) we should check that they all have the same length...
return self.inducing_variable_list[0].num_inducing
| def __len__(self) -> int:
return len(self.inducing_variable_list[0])
| https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def __init__(
self,
distribution_class: Type[tfp.distributions.Distribution] = tfp.distributions.Normal,
scale_transform: Optional[tfp.bijectors.Bijector] = None,
**kwargs,
):
"""
:param distribution_class: distribution class parameterized by `loc` and `scale`
as first and second argumen... | def __init__(
self,
distribution_class: Type[tfp.distributions.Distribution] = tfp.distributions.Normal,
scale_transform: tfp.bijectors.Bijector = positive(base="exp"),
**kwargs,
):
"""
:param distribution_class: distribution class parameterized by `loc` and `scale`
as first and second a... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def conditional_distribution(Fs) -> tfp.distributions.Distribution:
tf.debugging.assert_equal(tf.shape(Fs)[-1], 2)
loc = Fs[..., :1]
scale = self.scale_transform(Fs[..., 1:])
return distribution_class(loc, scale)
| def conditional_distribution(Fs) -> tfp.distributions.Distribution:
tf.debugging.assert_equal(tf.shape(Fs)[-1], 2)
loc = Fs[..., :1]
scale = scale_transform(Fs[..., 1:])
return distribution_class(loc, scale)
| https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def elbo(self) -> tf.Tensor:
"""
Construct a tensorflow function to compute the bound on the marginal
likelihood.
"""
Y_data = self.data
pX = DiagonalGaussian(self.X_data_mean, self.X_data_var)
num_inducing = self.inducing_variable.num_inducing
psi0 = tf.reduce_sum(expectation(pX, self... | def elbo(self) -> tf.Tensor:
"""
Construct a tensorflow function to compute the bound on the marginal
likelihood.
"""
Y_data = self.data
pX = DiagonalGaussian(self.X_data_mean, self.X_data_var)
num_inducing = len(self.inducing_variable)
psi0 = tf.reduce_sum(expectation(pX, self.kernel)... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def predict_f(
self, Xnew: InputData, full_cov: bool = False, full_output_cov: bool = False
) -> MeanAndVariance:
"""
Compute the mean and variance of the latent function at some new points.
Note that this is very similar to the SGPR prediction, for which
there are notes in the SGPR notebook.
N... | def predict_f(
self, Xnew: InputData, full_cov: bool = False, full_output_cov: bool = False
) -> MeanAndVariance:
"""
Compute the mean and variance of the latent function at some new points.
Note that this is very similar to the SGPR prediction, for which
there are notes in the SGPR notebook.
N... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def __init__(
self,
data: RegressionData,
kernel: Kernel,
likelihood: Likelihood,
mean_function: Optional[MeanFunction] = None,
num_latent_gps: Optional[int] = None,
inducing_variable: Optional[InducingPoints] = None,
):
"""
data is a tuple of X, Y with X, a data matrix, size [N, D] ... | def __init__(
self,
data: RegressionData,
kernel: Kernel,
likelihood: Likelihood,
mean_function: Optional[MeanFunction] = None,
num_latent_gps: Optional[int] = None,
inducing_variable: Optional[InducingPoints] = None,
):
"""
data is a tuple of X, Y with X, a data matrix, size [N, D] ... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def upper_bound(self) -> tf.Tensor:
"""
Upper bound for the sparse GP regression marginal likelihood. Note that
the same inducing points are used for calculating the upper bound, as are
used for computing the likelihood approximation. This may not lead to the
best upper bound. The upper bound can b... | def upper_bound(self) -> tf.Tensor:
"""
Upper bound for the sparse GP regression marginal likelihood. Note that
the same inducing points are used for calculating the upper bound, as are
used for computing the likelihood approximation. This may not lead to the
best upper bound. The upper bound can b... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def elbo(self) -> tf.Tensor:
"""
Construct a tensorflow function to compute the bound on the marginal
likelihood. For a derivation of the terms in here, see the associated
SGPR notebook.
"""
X_data, Y_data = self.data
num_inducing = self.inducing_variable.num_inducing
num_data = to_defa... | def elbo(self) -> tf.Tensor:
"""
Construct a tensorflow function to compute the bound on the marginal
likelihood. For a derivation of the terms in here, see the associated
SGPR notebook.
"""
X_data, Y_data = self.data
num_inducing = len(self.inducing_variable)
num_data = to_default_floa... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def predict_f(
self, Xnew: InputData, full_cov=False, full_output_cov=False
) -> MeanAndVariance:
"""
Compute the mean and variance of the latent function at some new points
Xnew. For a derivation of the terms in here, see the associated SGPR
notebook.
"""
X_data, Y_data = self.data
num_... | def predict_f(
self, Xnew: InputData, full_cov=False, full_output_cov=False
) -> MeanAndVariance:
"""
Compute the mean and variance of the latent function at some new points
Xnew. For a derivation of the terms in here, see the associated SGPR
notebook.
"""
X_data, Y_data = self.data
num_... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def common_terms(self):
X_data, Y_data = self.data
num_inducing = self.inducing_variable.num_inducing
err = Y_data - self.mean_function(X_data) # size [N, R]
Kdiag = self.kernel(X_data, full_cov=False)
kuf = Kuf(self.inducing_variable, self.kernel, X_data)
kuu = Kuu(self.inducing_variable, self... | def common_terms(self):
X_data, Y_data = self.data
num_inducing = len(self.inducing_variable)
err = Y_data - self.mean_function(X_data) # size [N, R]
Kdiag = self.kernel(X_data, full_cov=False)
kuf = Kuf(self.inducing_variable, self.kernel, X_data)
kuu = Kuu(self.inducing_variable, self.kernel,... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def __init__(
self,
kernel,
likelihood,
inducing_variable,
*,
mean_function=None,
num_latent_gps: int = 1,
q_diag: bool = False,
q_mu=None,
q_sqrt=None,
whiten: bool = True,
num_data=None,
):
"""
- kernel, likelihood, inducing_variables, mean_function are appropri... | def __init__(
self,
kernel,
likelihood,
inducing_variable,
*,
mean_function=None,
num_latent_gps: int = 1,
q_diag: bool = False,
q_mu=None,
q_sqrt=None,
whiten: bool = True,
num_data=None,
):
"""
- kernel, likelihood, inducing_variables, mean_function are appropri... | https://github.com/GPflow/GPflow/issues/1578 | TypeError Traceback (most recent call last)
<ipython-input-24-9a082736eedc> in <module>
38
39
---> 40 optimization_step()
41
42
~/anaconda3/lib/python3.8/site-packages/tensorflow/python/eager/def_function.py in __call__(self, *args, **kwds)
778 else:
779 compiler = "no... | TypeError |
def ndiagquad(funcs, H: int, Fmu, Fvar, logspace: bool = False, **Ys):
"""
Computes N Gaussian expectation integrals of one or more functions
using Gauss-Hermite quadrature. The Gaussians must be independent.
The means and variances of the Gaussians are specified by Fmu and Fvar.
The N-integrals ar... | def ndiagquad(funcs, H: int, Fmu, Fvar, logspace: bool = False, **Ys):
"""
Computes N Gaussian expectation integrals of one or more functions
using Gauss-Hermite quadrature. The Gaussians must be independent.
The means and variances of the Gaussians are specified by Fmu and Fvar.
The N-integrals ar... | https://github.com/GPflow/GPflow/issues/1547 | Traceback (most recent call last):
File "gpflow_error.py", line 20, in <module>
go()
File "gpflow_error.py", line 16, in go
quad = compute()
File "/Users/nferguson/gpflow_error/lib/python3.7/site-packages/tensorflow/python/eager/def_function.py", line 580, in __call__
result = self._call(*args, **kwds)
File "/Users/nfe... | tensorflow.python.framework.errors_impl.OperatorNotAllowedInGraphError |
def wrapper(old_fun):
def new_fun(X, **Ys):
Xs = tf.unstack(X, axis=-1)
fun_eval = old_fun(*Xs, **Ys)
return tf.cond(
pred=tf.less(tf.rank(fun_eval), tf.rank(X)),
true_fn=lambda: fun_eval[..., tf.newaxis],
false_fn=lambda: fun_eval,
)
return n... | def wrapper(old_fun):
def new_fun(X, **Ys):
Xs = tf.unstack(X, axis=-1)
fun_eval = old_fun(*Xs, **Ys)
if tf.rank(fun_eval) < tf.rank(X):
fun_eval = tf.expand_dims(fun_eval, axis=-1)
return fun_eval
return new_fun
| https://github.com/GPflow/GPflow/issues/1547 | Traceback (most recent call last):
File "gpflow_error.py", line 20, in <module>
go()
File "gpflow_error.py", line 16, in go
quad = compute()
File "/Users/nferguson/gpflow_error/lib/python3.7/site-packages/tensorflow/python/eager/def_function.py", line 580, in __call__
result = self._call(*args, **kwds)
File "/Users/nfe... | tensorflow.python.framework.errors_impl.OperatorNotAllowedInGraphError |
def new_fun(X, **Ys):
Xs = tf.unstack(X, axis=-1)
fun_eval = old_fun(*Xs, **Ys)
return tf.cond(
pred=tf.less(tf.rank(fun_eval), tf.rank(X)),
true_fn=lambda: fun_eval[..., tf.newaxis],
false_fn=lambda: fun_eval,
)
| def new_fun(X, **Ys):
Xs = tf.unstack(X, axis=-1)
fun_eval = old_fun(*Xs, **Ys)
if tf.rank(fun_eval) < tf.rank(X):
fun_eval = tf.expand_dims(fun_eval, axis=-1)
return fun_eval
| https://github.com/GPflow/GPflow/issues/1547 | Traceback (most recent call last):
File "gpflow_error.py", line 20, in <module>
go()
File "gpflow_error.py", line 16, in go
quad = compute()
File "/Users/nferguson/gpflow_error/lib/python3.7/site-packages/tensorflow/python/eager/def_function.py", line 580, in __call__
result = self._call(*args, **kwds)
File "/Users/nfe... | tensorflow.python.framework.errors_impl.OperatorNotAllowedInGraphError |
def __init__(
self,
data: OutputData,
latent_dim: int,
X_data_mean: Optional[tf.Tensor] = None,
kernel: Optional[Kernel] = None,
mean_function: Optional[MeanFunction] = None,
):
"""
Initialise GPLVM object. This method only works with a Gaussian likelihood.
:param data: y data matri... | def __init__(
self,
data: OutputData,
latent_dim: int,
X_data_mean: Optional[tf.Tensor] = None,
kernel: Optional[Kernel] = None,
mean_function: Optional[MeanFunction] = None,
):
"""
Initialise GPLVM object. This method only works with a Gaussian likelihood.
:param data: y data matri... | https://github.com/GPflow/GPflow/issues/1439 | Traceback (most recent call last):
File "main.py", line 177, in <module>
main(args)
File "main.py", line 64, in main
build_allele(args)
File "/path/to/1_model_sim/drivers.py", line 226, in build_allele
opt_model_list(m)
File "/path/to/1_model_sim/model.py", line 355, in opt_model_list
m.trainable_variables)
File "/path... | ValueError |
def __init__(
self,
data: OutputData,
X_data_mean: tf.Tensor,
X_data_var: tf.Tensor,
kernel: Kernel,
num_inducing_variables: Optional[int] = None,
inducing_variable=None,
X_prior_mean=None,
X_prior_var=None,
):
"""
Initialise Bayesian GPLVM object. This method only works with... | def __init__(
self,
data: OutputData,
X_data_mean: tf.Tensor,
X_data_var: tf.Tensor,
kernel: Kernel,
num_inducing_variables: Optional[int] = None,
inducing_variable=None,
X_prior_mean=None,
X_prior_var=None,
):
"""
Initialise Bayesian GPLVM object. This method only works with... | https://github.com/GPflow/GPflow/issues/1439 | Traceback (most recent call last):
File "main.py", line 177, in <module>
main(args)
File "main.py", line 64, in main
build_allele(args)
File "/path/to/1_model_sim/drivers.py", line 226, in build_allele
opt_model_list(m)
File "/path/to/1_model_sim/model.py", line 355, in opt_model_list
m.trainable_variables)
File "/path... | ValueError |
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