rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k | meta stringlengths 141 403 |
|---|---|---|---|
{ List pSummaries = agentCtrl.getUserProjects(); DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); root.removeAllChildren(); if (pSummaries != null) { Iterator i = pSummaries.iterator(); ProjectSummary ps; DefaultMutableTreeNode pNode; while (i.hasNext()) { ps = (ProjectSummary) i.next(); pNode = ne... | { List pSummaries = agentCtrl.getUserProjects(); DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); root.removeAllChildren(); if (pSummaries != null && pSummaries.size() !=0 ) { Iterator i = pSummaries.iterator(); ProjectSummary ps; DefaultMutableTreeNode pNode; while (i.hasNext()) { ps = (ProjectSu... | void rebuildTree() { List pSummaries = agentCtrl.getUserProjects(); DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); root.removeAllChildren(); if (pSummaries != null) { Iterator i = pSummaries.iterator(); ProjectSummary ps; DefaultMutableTreeNode pNode; while (i.hasNext()) { ps = (P... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
if (cDNodes == null) return; | if (cDNodes.size() == 0) return; | void refreshDatasetInTree(DatasetSummary ds) { if (cDNodes == null) return; List nodes = (List) cDNodes.get(new Integer(ds.getID())); if (nodes == null) return; Iterator i = nodes.iterator(); DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMu... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
void refreshDatasetInTree(DatasetSummary ds) { if (cDNodes == null) return; List nodes = (List) cDNodes.get(new Integer(ds.getID())); if (nodes == null) return; Iterator i = nodes.iterator(); DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMu... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java | ||
DefaultMutableTreeNode parent) { view.tree.expandPath(new TreePath(parent.getPath())); view.tree.scrollPathToVisible(new TreePath(child.getPath())); } | DefaultMutableTreeNode parent) { view.tree.expandPath(new TreePath(parent.getPath())); view.tree.scrollPathToVisible(new TreePath(child.getPath())); } | private void setNodeVisible(DefaultMutableTreeNode child, DefaultMutableTreeNode parent) { view.tree.expandPath(new TreePath(parent.getPath())); view.tree.scrollPathToVisible(new TreePath(child.getPath())); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
{ DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMutableTreeNode pNode; List pSummaries = agentCtrl.getUserProjects(); if (pSummaries != null) { Iterator j = pSummaries.iterator(); ProjectSummary ps; while (j.hasNext()) { ps = (ProjectSummary) j.next(); pNode = (DefaultMutableTreeNode) | { DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMutableTreeNode pNode; List pSummaries = agentCtrl.getUserProjects(); if (pSummaries != null) { Iterator j = pSummaries.iterator(); ProjectSummary ps; while (j.hasNext()) { ps = (ProjectSummary) j.next(); pNode = (DefaultMutableTreeNode) | void updateDatasetInTree() { DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMutableTreeNode pNode; List pSummaries = agentCtrl.getUserProjects(); if (pSummaries != null) { Iterator j = pSummaries.iterator(); ProjectSummary ps; while (j.hasNext()) { ps = (ProjectSum... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
pNode.removeAllChildren(); addDatasets(ps.getDatasets(), pNode, false); treeModel.reload(pNode); } } } | pNode.removeAllChildren(); addDatasets(ps.getDatasets(), pNode, false); treeModel.reload(pNode); } } } | void updateDatasetInTree() { DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMutableTreeNode pNode; List pSummaries = agentCtrl.getUserProjects(); if (pSummaries != null) { Iterator j = pSummaries.iterator(); ProjectSummary ps; while (j.hasNext()) { ps = (ProjectSum... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
if (cDNodes != null) { Iterator i = cDNodes.keySet().iterator(); Iterator j; DefaultMutableTreeNode dNode; List dNodes, images; Integer datasetID; updateImagesInDataset(is); while (i.hasNext()) { datasetID = (Integer) i.next(); images = (List) imagesInDataset.get(datasetID); dNodes = (List) cDNodes.get(datasetID); j ... | if (cDNodes.size() == 0) return; Iterator i = cDNodes.keySet().iterator(); Iterator j; DefaultMutableTreeNode dNode; List dNodes, images; Integer datasetID; updateImagesInDataset(is); while (i.hasNext()) { datasetID = (Integer) i.next(); images = (List) imagesInDataset.get(datasetID); dNodes = (List) cDNodes.get(data... | void updateImageInTree(ImageSummary is) { DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); if (cDNodes != null) { Iterator i = cDNodes.keySet().iterator(); Iterator j; DefaultMutableTreeNode dNode; List dNodes, images; Inte... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
{ Iterator i = imagesInDataset.keySet().iterator(); Iterator j; List images; ImageSummary is; while (i.hasNext()) { images = (List) imagesInDataset.get(i.next()); j = images.iterator(); while (j.hasNext()) { is = (ImageSummary) j.next(); if (is.getID() == retVal.getID()) { is.setName(retVal.getName()); break; } } } } | { Iterator i = imagesInDataset.keySet().iterator(); Iterator j; List images; ImageSummary is; while (i.hasNext()) { images = (List) imagesInDataset.get(i.next()); j = images.iterator(); while (j.hasNext()) { is = (ImageSummary) j.next(); if (is.getID() == retVal.getID()) { is.setName(retVal.getName()); break; } } } } | private void updateImagesInDataset(ImageSummary retVal) { Iterator i = imagesInDataset.keySet().iterator(); Iterator j; List images; ImageSummary is; while (i.hasNext()) { images = (List) imagesInDataset.get(i.next()); j = images.iterator(); while (j.hasNext()) { is = (ImageSummary) j.next(); if (is.g... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
{ DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMutableTreeNode pNode; List pSummaries = agentCtrl.getUserProjects(); if (pSummaries != null) { Iterator j = pSummaries.iterator(); ProjectSummary ps; Integer projectID; while (j.hasNext()) { ps = (ProjectSummary) j.next(); projectID = new I... | { DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMutableTreeNode pNode; List pSummaries = agentCtrl.getUserProjects(); if (pSummaries != null) { Iterator j = pSummaries.iterator(); ProjectSummary ps; Integer projectID; while (j.hasNext()) { ps = (ProjectSummary) j.next(); projectID = new I... | void updateProjectInTree() { DefaultTreeModel treeModel = (DefaultTreeModel) view.tree.getModel(); DefaultMutableTreeNode pNode; List pSummaries = agentCtrl.getUserProjects(); if (pSummaries != null) { Iterator j = pSummaries.iterator(); ProjectSummary ps; Integer projectID; while (j.hasNext()) {... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f6adad8d8ff39bdd3e4f95c09c34b2489329435/ExplorerPaneManager.java/clean/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPaneManager.java |
if( usrObj instanceof ProjectSummary || usrObj instanceof DatasetSummary || usrObj instanceof ImageSummary ) | if (usrObj instanceof ProjectSummary || usrObj instanceof DatasetSummary || usrObj instanceof ImageSummary) | DataObject getCurrentOMEObject() { DataObject target = null; DefaultMutableTreeNode node = (DefaultMutableTreeNode) tree.getLastSelectedPathComponent(); if (node != null) { Object usrObj = node.getUserObject(); if( usrObj instanceof ProjectSummary || usrObj instanceof DatasetSummary || usrOb... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6ec05530173229b43c3f21f0021b71fd776dd63c/ExplorerPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/ExplorerPane.java |
TinyWindowUI(TinyWindow window, BufferedImage image) | public TinyWindowUI(TinyWindow window, BufferedImage image) | TinyWindowUI(TinyWindow window, BufferedImage image) { if (window == null) throw new NullPointerException("No window."); this.window = window; titleBar = new TitleBar(window.getTitle()); canvas = new ThumbnailCanvas(image); makeBorders(); makeComponentsSize(image); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/11fc11c4e769e382f5279d4e21088d468940d1b6/TinyWindowUI.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/twindow/TinyWindowUI.java |
void attachMouseListener(MouseListener controller) | public void attachMouseListener(MouseListener controller) | void attachMouseListener(MouseListener controller) { titleBar.addMouseListener(controller); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/11fc11c4e769e382f5279d4e21088d468940d1b6/TinyWindowUI.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/twindow/TinyWindowUI.java |
public Experimenter(Integer attributeId, String omeName, String email, String firstname, String password, String dataDir, String lastname, String institution, org.openmicroscopy.omero.model.Group group, org.openmicroscopy.omero.model.ModuleExecution moduleExecution, Set datasets, Set groupsByLeader, Set groupsByContact... | public Experimenter() { | public Experimenter(Integer attributeId, String omeName, String email, String firstname, String password, String dataDir, String lastname, String institution, org.openmicroscopy.omero.model.Group group, org.openmicroscopy.omero.model.ModuleExecution moduleExecution, Set datasets, Set groupsByLeader, Set groupsByCon... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/Experimenter.java/clean/components/common/src/org/openmicroscopy/omero/model/Experimenter.java |
public org.openmicroscopy.omero.model.Group getGroup() { | public Group getGroup() { | public org.openmicroscopy.omero.model.Group getGroup() { return this.group; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/Experimenter.java/clean/components/common/src/org/openmicroscopy/omero/model/Experimenter.java |
public org.openmicroscopy.omero.model.ModuleExecution getModuleExecution() { | public ModuleExecution getModuleExecution() { | public org.openmicroscopy.omero.model.ModuleExecution getModuleExecution() { return this.moduleExecution; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/Experimenter.java/clean/components/common/src/org/openmicroscopy/omero/model/Experimenter.java |
public void setGroup(org.openmicroscopy.omero.model.Group group) { | public void setGroup(Group group) { | public void setGroup(org.openmicroscopy.omero.model.Group group) { this.group = group; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/Experimenter.java/clean/components/common/src/org/openmicroscopy/omero/model/Experimenter.java |
public void setModuleExecution(org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { | public void setModuleExecution(ModuleExecution moduleExecution) { | public void setModuleExecution(org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { this.moduleExecution = moduleExecution; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/Experimenter.java/clean/components/common/src/org/openmicroscopy/omero/model/Experimenter.java |
if (blockVar != null) { if (blockVar instanceof ZeroArgNode) { if (yieldProc && arrayLength(value) != 0) { throw runtime.newArgumentError("wrong # of arguments(" + ((RubyArray)value).getLength() + "for 0)"); | if(blockVar == null) { return new IRubyObject[]{value}; } if (blockVar instanceof ZeroArgNode) { if (yieldProc && arrayLength(value) != 0) { throw runtime.newArgumentError("wrong # of arguments(" + ((RubyArray)value).getLength() + "for 0)"); } } else if (blockVar instanceof MultipleAsgnNode) { if (!aValue) { value =... | private IRubyObject[] getBlockArgs(IRubyObject value, IRubyObject self, boolean yieldProc, boolean aValue, Block currentBlock) { Node blockVar = currentBlock.getVar(); if (blockVar != null) { if (blockVar instanceof ZeroArgNode) { // Better not have arguments for a no-arg blo... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b87fee1b90fc7a4ff567235e2fc1387d035bbf31/ThreadContext.java/clean/src/org/jruby/runtime/ThreadContext.java |
} else if (blockVar instanceof MultipleAsgnNode) { if (!aValue) { value = sValueToMRHS(value, ((MultipleAsgnNode)blockVar).getHeadNode()); } | } else if (value == null) { runtime.getWarnings().warn("multiple values for a block parameter (0 for 1)"); } | private IRubyObject[] getBlockArgs(IRubyObject value, IRubyObject self, boolean yieldProc, boolean aValue, Block currentBlock) { Node blockVar = currentBlock.getVar(); if (blockVar != null) { if (blockVar instanceof ZeroArgNode) { // Better not have arguments for a no-arg blo... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b87fee1b90fc7a4ff567235e2fc1387d035bbf31/ThreadContext.java/clean/src/org/jruby/runtime/ThreadContext.java |
value = mAssign(self, (MultipleAsgnNode)blockVar, (RubyArray)value, yieldProc); } else { if (aValue) { int length = arrayLength(value); if (length == 0) { value = runtime.getNil(); } else if (length == 1) { value = ((RubyArray)value).first(IRubyObject.NULL_ARRAY); } else { } } else if (value == null) { } Assignm... | AssignmentVisitor.assign(this, getFrameSelf(), blockVar, value, yieldProc); | private IRubyObject[] getBlockArgs(IRubyObject value, IRubyObject self, boolean yieldProc, boolean aValue, Block currentBlock) { Node blockVar = currentBlock.getVar(); if (blockVar != null) { if (blockVar instanceof ZeroArgNode) { // Better not have arguments for a no-arg blo... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b87fee1b90fc7a4ff567235e2fc1387d035bbf31/ThreadContext.java/clean/src/org/jruby/runtime/ThreadContext.java |
IRubyObject[] args = ArgsUtil.arrayify(value); return args; | return ArgsUtil.arrayify(value); | private IRubyObject[] getBlockArgs(IRubyObject value, IRubyObject self, boolean yieldProc, boolean aValue, Block currentBlock) { Node blockVar = currentBlock.getVar(); if (blockVar != null) { if (blockVar instanceof ZeroArgNode) { // Better not have arguments for a no-arg blo... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b87fee1b90fc7a4ff567235e2fc1387d035bbf31/ThreadContext.java/clean/src/org/jruby/runtime/ThreadContext.java |
public SourcePositionFactory() { } | public SourcePositionFactory(LexerSource source) { this.source = source; } | public SourcePositionFactory() { } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/SourcePositionFactory.java/buggy/src/org/jruby/lexer/yacc/SourcePositionFactory.java |
return new SourcePosition("", -1, -1, 0, 0); | return new SourcePosition("", -1, -1, 0, 0); | public ISourcePosition getDummyPosition() { return new SourcePosition("", -1, -1, 0, 0); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/SourcePositionFactory.java/buggy/src/org/jruby/lexer/yacc/SourcePositionFactory.java |
public RaiseException newNameError(String message); | public RaiseException newNameError(String message, String name); | public RaiseException newNameError(String message); | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1278c5bb3507a052d150d814f15453542ae41aed/IRuby.java/buggy/src/org/jruby/IRuby.java |
public CreateDatasetEditorManager(CreateDatasetEditor view, DataManagerCtrl control, | CreateDatasetEditorManager(CreateDatasetEditor view, DataManagerCtrl agentCtrl, | public CreateDatasetEditorManager(CreateDatasetEditor view, DataManagerCtrl control, DatasetData model, List projects) { this.control = control; this.view = view; this.model = model; selectionIndex = -1; this.projects = projects; imagesToAdd = new ArrayList(); projectsToAdd = new Arra... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
this.control = control; | this.agentCtrl = agentCtrl; | public CreateDatasetEditorManager(CreateDatasetEditor view, DataManagerCtrl control, DatasetData model, List projects) { this.control = control; this.view = view; this.model = model; selectionIndex = -1; this.projects = projects; imagesToAdd = new ArrayList(); projectsToAdd = new Arra... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
showImages(); | showImages(); break; case IMAGES_SELECTION: bringSelector(e); break; | public void actionPerformed(ActionEvent e) { int index = -1; try { index = Integer.parseInt(e.getActionCommand()); switch (index) { case SAVE: save(); break; case CANCEL: cancel(); break; case SELECT_PROJECT: selectProject(); break; case RESET_SELECTION_PROJECT: resetSelecti... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
attachBoxListeners(view.getImagesSelections(), IMAGES_SELECTION); | void initListeners() { attachButtonListener(view.getSaveButton(), SAVE); attachButtonListener(view.getCancelButton(), CANCEL); attachButtonListener(view.getSelectButton(), SELECT_PROJECT); attachButtonListener(view.getResetProjectButton(), RESET_SELECTION_PROJECT... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java | |
UserNotifier un = control.getRegistry().getUserNotifier(); | UserNotifier un = agentCtrl.getRegistry().getUserNotifier(); | private void save() { if (projectsToAdd.size() == 0) { UserNotifier un = control.getRegistry().getUserNotifier(); un.notifyInfo("Create dataset", "The dataset you wish to create must " + "be added to an existing project."); return; }... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
"The dataset you wish to create must " + | "The dataset you want to create must " + | private void save() { if (projectsToAdd.size() == 0) { UserNotifier un = control.getRegistry().getUserNotifier(); un.notifyInfo("Create dataset", "The dataset you wish to create must " + "be added to an existing project."); return; }... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
control.addDataset(projectsToAdd, imagesToAdd, model); | agentCtrl.addDataset(projectsToAdd, imagesToAdd, model); | private void save() { if (projectsToAdd.size() == 0) { UserNotifier un = control.getRegistry().getUserNotifier(); un.notifyInfo("Create dataset", "The dataset you wish to create must " + "be added to an existing project."); return; }... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
images = control.getImportedImages(); break; case CreateDatasetImagesPane.IMAGES_USED: images = control.getUsedImages(); break; | images = agentCtrl.getImportedImages(); break; | private void showImages() { int selectedIndex = view.getImagesSelections().getSelectedIndex(); if (selectedIndex != selectionIndex) { selectionIndex = selectedIndex; List images = null; switch (selectedIndex) { case CreateDatasetImagesPane.IMAGES_IMPO... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
images = control.getGroupImages(); break; | images = agentCtrl.getGroupImages(); break; | private void showImages() { int selectedIndex = view.getImagesSelections().getSelectedIndex(); if (selectedIndex != selectionIndex) { selectionIndex = selectedIndex; List images = null; switch (selectedIndex) { case CreateDatasetImagesPane.IMAGES_IMPO... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
images = control.getSystemImages(); break; | images = agentCtrl.getSystemImages(); break; | private void showImages() { int selectedIndex = view.getImagesSelections().getSelectedIndex(); if (selectedIndex != selectionIndex) { selectionIndex = selectedIndex; List images = null; switch (selectedIndex) { case CreateDatasetImagesPane.IMAGES_IMPO... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
if (images == null || images.size() == 0) return; view.showImages(images); | displayListImages(images); | private void showImages() { int selectedIndex = view.getImagesSelections().getSelectedIndex(); if (selectedIndex != selectionIndex) { selectionIndex = selectedIndex; List images = null; switch (selectedIndex) { case CreateDatasetImagesPane.IMAGES_IMPO... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a82d641ae8b6aae180291dcfe5e2b1c45e55ea11/CreateDatasetEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetEditorManager.java |
.exp(new Integer(3)) | .exp(new Long(3)) | public void testAllMethods(){ log.info( ob.allCounts() .countsFor(new Integer(1)) .noCounts() .exp(new Integer(3)) .allExps() .noLeaves() .map() ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0b36a8e77f5bacb7e122d76ffce01866205b09d7/PojoOptionsTest.java/clean/components/common/test/ome/util/utests/PojoOptionsTest.java |
public PojoOptions exp(Integer i){ | public PojoOptions exp(Long i){ | public PojoOptions exp(Integer i){ options.put(EXPERIMENTER,i); return this; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0b36a8e77f5bacb7e122d76ffce01866205b09d7/PojoOptions.java/buggy/components/common/src/ome/util/builders/PojoOptions.java |
CRefNode savedCref = null; | CRefNode savedCref = ruby.getCRef(); | public RubyObject call(Ruby ruby, RubyObject recv, RubyId id, RubyObject[] args, boolean noSuper) { CRefNode savedCref = null; // VALUE[] localVars = null; RubyPointer argsList = new RubyPointer(args); RubyPointer localVarsList = null; ruby.getRubyScope().push(); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9a05f18f2b6207bf93455d756436fe8f0002b542/ScopeNode.java/clean/org/jruby/nodes/ScopeNode.java |
savedCref = ruby.getCRef(); | public RubyObject call(Ruby ruby, RubyObject recv, RubyId id, RubyObject[] args, boolean noSuper) { CRefNode savedCref = null; // VALUE[] localVars = null; RubyPointer argsList = new RubyPointer(args); RubyPointer localVarsList = null; ruby.getRubyScope().push(); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9a05f18f2b6207bf93455d756436fe8f0002b542/ScopeNode.java/clean/org/jruby/nodes/ScopeNode.java | |
ruby.getCRef().push(module); | ruby.getCRef().push(module); | public RubyObject setupModule(Ruby ruby, RubyModule module) { // Node node = n; String file = ruby.getSourceFile(); int line = ruby.getSourceLine(); // TMP_PROTECT; RubyFrame frame = ruby.getRubyFrame(); frame.setTmp(ruby.getRubyFrame()); ruby... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9a05f18f2b6207bf93455d756436fe8f0002b542/ScopeNode.java/clean/org/jruby/nodes/ScopeNode.java |
if (regEx == null || regEx.length() == 0) { UserNotifier un = HiViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Search", "No phrase to find."); return; } | private void performSearch() { try { int index = view.getSearchType(); String regEx = view.getSearchValue(); Pattern p = RegExFactory.createCaseInsensitivePattern(regEx); FindRegExCmd cmd = new FindRegExCmd(view.model.getParentModel(), ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3feec30057da68977528d8509d07bff5c080fb40/CBSearchTabViewMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/CBSearchTabViewMng.java | |
public FindRegExCmd(HiViewer model, String regEx, int index) | public FindRegExCmd(HiViewer model, Pattern pattern, int index) | public FindRegExCmd(HiViewer model, String regEx, int index) { if (model == null) throw new IllegalArgumentException("No model."); if (regEx == null) throw new IllegalArgumentException("No regular expression."); if (!checkIndex(index)) throw new IllegalArgume... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0c7517f5d0ece413452f58f3f0a071be2ccbee2e/FindRegExCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/FindRegExCmd.java |
if (regEx == null) throw new IllegalArgumentException("No regular expression."); | if (pattern == null) throw new IllegalArgumentException("No pattern."); | public FindRegExCmd(HiViewer model, String regEx, int index) { if (model == null) throw new IllegalArgumentException("No model."); if (regEx == null) throw new IllegalArgumentException("No regular expression."); if (!checkIndex(index)) throw new IllegalArgume... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0c7517f5d0ece413452f58f3f0a071be2ccbee2e/FindRegExCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/FindRegExCmd.java |
this.regEx = regEx; | this.pattern = pattern; | public FindRegExCmd(HiViewer model, String regEx, int index) { if (model == null) throw new IllegalArgumentException("No model."); if (regEx == null) throw new IllegalArgumentException("No regular expression."); if (!checkIndex(index)) throw new IllegalArgume... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0c7517f5d0ece413452f58f3f0a071be2ccbee2e/FindRegExCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/FindRegExCmd.java |
visitor = new FindRegExTitleVisitor(model, regEx); | visitor = new FindRegExTitleVisitor(model, pattern); | public void execute() { FindRegExVisitor visitor = null; switch (index) { case IN_TITLE: visitor = new FindRegExTitleVisitor(model, regEx); break; case IN_ANNOTATION: visitor = new FindRegExAnnotationVisitor(model, regEx); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0c7517f5d0ece413452f58f3f0a071be2ccbee2e/FindRegExCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/FindRegExCmd.java |
visitor = new FindRegExAnnotationVisitor(model, regEx); | visitor = new FindRegExAnnotationVisitor(model, pattern); | public void execute() { FindRegExVisitor visitor = null; switch (index) { case IN_TITLE: visitor = new FindRegExTitleVisitor(model, regEx); break; case IN_ANNOTATION: visitor = new FindRegExAnnotationVisitor(model, regEx); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0c7517f5d0ece413452f58f3f0a071be2ccbee2e/FindRegExCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/FindRegExCmd.java |
visitor = new FindRegExTitleAndAnnotationVisitor(model, regEx); | visitor = new FindRegExTitleAndAnnotationVisitor(model, pattern); | public void execute() { FindRegExVisitor visitor = null; switch (index) { case IN_TITLE: visitor = new FindRegExTitleVisitor(model, regEx); break; case IN_ANNOTATION: visitor = new FindRegExAnnotationVisitor(model, regEx); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0c7517f5d0ece413452f58f3f0a071be2ccbee2e/FindRegExCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/FindRegExCmd.java |
if (type == ruby.getExceptions().getRuntimeError() && info.length() == 0) { | if (type == ruby.getExceptions().getRuntimeError() && (info == null || info.length() == 0)) { | public void printError(RubyException excp) { if (excp == null || excp.isNil()) { return; } RubyArray backtrace = (RubyArray) excp.funcall("backtrace"); if (backtrace.isNil()) { if (ruby.getSourceFile() != null) { getErrorStream().print(ruby.getSourceFile() + ':' + ruby.getSourceLine()); } else { getErr... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f7702d0afbe9410b0033881bbc09af818b54c112/RubyRuntime.java/buggy/org/jruby/runtime/RubyRuntime.java |
public Namespace(RubyModule namespaceModule, Namespace parent) { this.namespaceModule = namespaceModule; this.parent = parent; | public Namespace(RubyModule namespaceModule) { this(namespaceModule, null); | public Namespace(RubyModule namespaceModule, Namespace parent) { this.namespaceModule = namespaceModule; this.parent = parent; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/095520dd469b76e5c1b4ca012804294c66855e55/Namespace.java/buggy/org/jruby/runtime/Namespace.java |
if (model == null) | if(model != null) | public void setModel(ThumbnailDataModel model) { if (model == null) { this.model = model; } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/25bc1b3f47fa8b5a4b979f064e45af877edcc175/Thumbnail.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/images/Thumbnail.java |
return new ProxyCleanupFilter().filter(null, arg0.proceed()); | Object result = arg0.proceed(); if (!StatefulServiceInterface.class .isAssignableFrom( arg0.getThis().getClass())) { result = new ProxyCleanupFilter().filter(null, result); } return result; | public Object invoke(MethodInvocation arg0) throws Throwable { return new ProxyCleanupFilter().filter(null, arg0.proceed()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d5f70f979d40e800343124ec8c28a1f184e2acc8/ProxyCleanupFilter.java/clean/components/server/src/ome/tools/hibernate/ProxyCleanupFilter.java |
DataObject hierarchyObject) | DataObject hierarchyObject) | protected EditorModel(TreeViewer parentModel, int editorType, DataObject hierarchyObject) { if (parentModel == null) throw new NullPointerException("No parent model."); if (editorType != Editor.CREATE_EDITOR && editorType != Editor.PROPERTIES_EDITO... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d5c797990d356c4ac91ebfe686270c29f4586bd6/EditorModel.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/editors/EditorModel.java |
public ViewCmd(TreeViewer model, DataObject hierarchyObject) | public ViewCmd(TreeViewer model) | public ViewCmd(TreeViewer model, DataObject hierarchyObject) { if (model == null) throw new IllegalArgumentException("No model."); this.model = model; if (hierarchyObject == null) throw new IllegalArgumentException("No hierarchyObject."); this.hierarchyObject = hierarchyOb... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1c15bffbe5079ea04feee6747b2b93a8c8078270/ViewCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/cmd/ViewCmd.java |
if (hierarchyObject == null) throw new IllegalArgumentException("No hierarchyObject."); this.hierarchyObject = hierarchyObject; | public ViewCmd(TreeViewer model, DataObject hierarchyObject) { if (model == null) throw new IllegalArgumentException("No model."); this.model = model; if (hierarchyObject == null) throw new IllegalArgumentException("No hierarchyObject."); this.hierarchyObject = hierarchyOb... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1c15bffbe5079ea04feee6747b2b93a8c8078270/ViewCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/cmd/ViewCmd.java | |
bus.post(new LoadImage(data.getId(), data.getDefaultPixels().getId(), data.getName())); | bus.post(new ViewImage(data.getId(), 166, data.getName())); | public void execute() { Browser browser = model.getSelectedBrowser(); if (browser == null) return; Object ho; if (hierarchyObject != null) ho = hierarchyObject; else { TreeImageDisplay display = browser.getSelectedDisplay(); if (display == null) return; ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1c15bffbe5079ea04feee6747b2b93a8c8078270/ViewCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/cmd/ViewCmd.java |
root, browser.getRootID())); | root, browser.getRootID())); | public void execute() { Browser browser = model.getSelectedBrowser(); if (browser == null) return; Object ho; if (hierarchyObject != null) ho = hierarchyObject; else { TreeImageDisplay display = browser.getSelectedDisplay(); if (display == null) return; ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1c15bffbe5079ea04feee6747b2b93a8c8078270/ViewCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/cmd/ViewCmd.java |
if (parent == null) throw new IllegalArgumentException("No parent."); | public DataObjectCreator(Editor viewer, DataObject userObject, Object parent) { super(viewer); if (userObject == null) throw new IllegalArgumentException("No object to create."); if (parent == null) throw new IllegalArgumentException("No parent."); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64ee7ec527da3cc538fcd8d0a21183719f854676/DataObjectCreator.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/DataObjectCreator.java | |
return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/FixnumNode.java/clean/src/org/jruby/ast/FixnumNode.java |
family = QuantumFactory.LINEAR; | family = QuantumFactory.getFamily(QuantumFactory.LINEAR); | protected QuantumStrategy(QuantumDef qd, PixelsType pt) { windowStart = globalMin = 0.0; windowEnd = globalMax = 1.0; family = QuantumFactory.LINEAR; curveCoefficient = 1.0; if (qd == null) throw new NullPointerException("No quantum definition"); this.qDef = qd; if (pt == null) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
private void defineMapper(int family) | private void defineMapper(Family family) | private void defineMapper(int family) { verifyFamily(family); switch (family) { case QuantumFactory.LINEAR: case QuantumFactory.POLYNOMIAL: valueMapper = new PolynomialMap(); break; case QuantumFactory.LOGARITHMIC: valueM... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
verifyFamily(family); switch (family) { case QuantumFactory.LINEAR: case QuantumFactory.POLYNOMIAL: | String value = family.getValue(); verifyFamily(value); if (value.equals(QuantumFactory.LINEAR) || value.equals(QuantumFactory.POLYNOMIAL)) | private void defineMapper(int family) { verifyFamily(family); switch (family) { case QuantumFactory.LINEAR: case QuantumFactory.POLYNOMIAL: valueMapper = new PolynomialMap(); break; case QuantumFactory.LOGARITHMIC: valueM... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
break; case QuantumFactory.LOGARITHMIC: valueMapper = new LogarithmicMap(); break; case QuantumFactory.EXPONENTIAL: valueMapper = new ExponentialMap(); break; default: } | else if (value.equals(QuantumFactory.LOGARITHMIC)) valueMapper = new LogarithmicMap(); else if (value.equals(QuantumFactory.EXPONENTIAL)) valueMapper = new ExponentialMap(); | private void defineMapper(int family) { verifyFamily(family); switch (family) { case QuantumFactory.LINEAR: case QuantumFactory.POLYNOMIAL: valueMapper = new PolynomialMap(); break; case QuantumFactory.LOGARITHMIC: valueM... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
int getFamily() { return family; } | Family getFamily() { return family; } | int getFamily() { return family; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
public void setMapping(int family, double k, boolean noiseReduction) | public void setMapping(Family family, double k, boolean noiseReduction) | public void setMapping(int family, double k, boolean noiseReduction) { defineMapper(family); this.family = family; curveCoefficient = k; this.noiseReduction = noiseReduction; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
public void setQuantizationMap(int family, double k, boolean noiseReduction) | public void setQuantizationMap(Family family, double k, boolean noiseReduction) | public void setQuantizationMap(int family, double k, boolean noiseReduction) { setMapping(family, k, noiseReduction); onWindowChange(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
private static void verifyFamily(int family) | private static void verifyFamily(String value) | private static void verifyFamily(int family) { switch (family) { case QuantumFactory.LINEAR: case QuantumFactory.LOGARITHMIC: case QuantumFactory.EXPONENTIAL: case QuantumFactory.POLYNOMIAL: return; default: throw new Ill... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
switch (family) { case QuantumFactory.LINEAR: case QuantumFactory.LOGARITHMIC: case QuantumFactory.EXPONENTIAL: case QuantumFactory.POLYNOMIAL: return; default: throw new IllegalArgumentException("Unsupported family type"); } | if (!value.equals(QuantumFactory.LINEAR) && !value.equals(QuantumFactory.LOGARITHMIC) && !value.equals(QuantumFactory.EXPONENTIAL) && !value.equals(QuantumFactory.POLYNOMIAL)) throw new IllegalArgumentException( "Unsupported family type: '" + value + "'"); | private static void verifyFamily(int family) { switch (family) { case QuantumFactory.LINEAR: case QuantumFactory.LOGARITHMIC: case QuantumFactory.EXPONENTIAL: case QuantumFactory.POLYNOMIAL: return; default: throw new Ill... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
if (PixelTypeHelper.in(type, new String[] { "int8", "uint8" })) { | if (PlaneFactory.in(type, new String[] { "int8", "uint8" })) { | private void verifyInterval(double min, double max) { boolean b = false; if (min <= max) { double range = max-min; if (PixelTypeHelper.in(type, new String[] { "int8", "uint8" })) { if (range < 0x100) b = true; } else if (PixelTypeHelper.in(type, ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
} else if (PixelTypeHelper.in(type, | } else if (PlaneFactory.in(type, | private void verifyInterval(double min, double max) { boolean b = false; if (min <= max) { double range = max-min; if (PixelTypeHelper.in(type, new String[] { "int8", "uint8" })) { if (range < 0x100) b = true; } else if (PixelTypeHelper.in(type, ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
} else if (PixelTypeHelper.in(type, | } else if (PlaneFactory.in(type, | private void verifyInterval(double min, double max) { boolean b = false; if (min <= max) { double range = max-min; if (PixelTypeHelper.in(type, new String[] { "int8", "uint8" })) { if (range < 0x100) b = true; } else if (PixelTypeHelper.in(type, ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
} else if (PixelTypeHelper.in(type, | } else if (PlaneFactory.in(type, | private void verifyInterval(double min, double max) { boolean b = false; if (min <= max) { double range = max-min; if (PixelTypeHelper.in(type, new String[] { "int8", "uint8" })) { if (range < 0x100) b = true; } else if (PixelTypeHelper.in(type, ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/QuantumStrategy.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumStrategy.java |
cacheEnabled=((Boolean)values[2]).booleanValue(); | public void restoreState(FacesContext ctx, Object state) { Object values[] = (Object[]) state; super.restoreState(ctx, values[0]); headlineAsLink=((Boolean)values[1]).booleanValue(); } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/18f3f17c7d7e21ff910a232da3187e72e9de9847/ArticleItemViewer.java/clean/src/java/com/idega/block/article/component/ArticleItemViewer.java | |
Object values[] = new Object[2]; | Object values[] = new Object[3]; | public Object saveState(FacesContext ctx) { Object values[] = new Object[2]; values[0] = super.saveState(ctx); values[1] = Boolean.valueOf(headlineAsLink); return values; } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/18f3f17c7d7e21ff910a232da3187e72e9de9847/ArticleItemViewer.java/clean/src/java/com/idega/block/article/component/ArticleItemViewer.java |
values[2] = Boolean.valueOf(cacheEnabled); | public Object saveState(FacesContext ctx) { Object values[] = new Object[2]; values[0] = super.saveState(ctx); values[1] = Boolean.valueOf(headlineAsLink); return values; } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/18f3f17c7d7e21ff910a232da3187e72e9de9847/ArticleItemViewer.java/clean/src/java/com/idega/block/article/component/ArticleItemViewer.java | |
protected DataLoader createHierarchyLoader() | protected DataLoader createHierarchyLoader(boolean refresh) | protected DataLoader createHierarchyLoader() { return new DatasetLoader(component, datasetsID); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/DatasetModel.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/DatasetModel.java |
return new DatasetLoader(component, datasetsID); | return new DatasetLoader(component, datasetsID, refresh); | protected DataLoader createHierarchyLoader() { return new DatasetLoader(component, datasetsID); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/DatasetModel.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/DatasetModel.java |
throws ServletException, IOException { | throws IOException { | final private void doRequest( HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { WebContext context = null; if (_problem != null) { init(); if (_problem != null) { try { resp.setContentType("text/html"); ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/289617da402a00c35bb091baf41ccd5f8d4042c2/WMServlet.java/buggy/webmacro/src/org/webmacro/servlet/WMServlet.java |
public void write(String s) throws IOException | public void write(int b) throws IOException | public void write(String s) throws IOException { this.write(s,0,s.length()); } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/1ea887f7b197431dd85ca8259382755c7915dc7c/FastWriter.java/buggy/webmacro/src/org/webmacro/FastWriter.java |
this.write(s,0,s.length()); | if ((_cpos + 1) > CSIZE) cflush(); _cbuf[_cpos] = (char) b; _cpos++; | public void write(String s) throws IOException { this.write(s,0,s.length()); } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/1ea887f7b197431dd85ca8259382755c7915dc7c/FastWriter.java/buggy/webmacro/src/org/webmacro/FastWriter.java |
System.out.println("WebContext.getResponse() called!"); | public final HttpServletResponse getResponse() { return _response; } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/278b4a35f5c73b37a3381dc75821bfaa4d3aa3d0/WebContext.java/buggy/webmacro/src/org/webmacro/servlet/WebContext.java | |
return self.getRuntime().newString("tag:yaml.org,2002:map"); | String className = self.getType().getName(); if("Hash".equals(className)) { return self.getRuntime().newString("tag:yaml.org,2002:map"); } else { return self.getRuntime().newString("tag:yaml.org,2002:map:" + className); } | public IRubyObject method1(ThreadContext context, IRubyObject self, IRubyObject[] args) { return self.getRuntime().newString("tag:yaml.org,2002:map"); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/121d8287e0a8d27aa18bbefd10a9ebf08fe51d8d/RubyYAML.java/buggy/src/org/jruby/RubyYAML.java |
return self.getRuntime().newString("tag:yaml.org,2002:seq"); | String className = self.getType().getName(); if("Array".equals(className)) { return self.getRuntime().newString("tag:yaml.org,2002:seq"); } else { return self.getRuntime().newString("tag:yaml.org,2002:seq:" + className); } | public IRubyObject method9(ThreadContext context, IRubyObject self, IRubyObject[] args) { return self.getRuntime().newString("tag:yaml.org,2002:seq"); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/121d8287e0a8d27aa18bbefd10a9ebf08fe51d8d/RubyYAML.java/buggy/src/org/jruby/RubyYAML.java |
IRubyObject io = self.getRuntime().getClass("File").callMethod(context,"open", args[0]); self.callMethod(context,"load", io); | IRubyObject io = self.getRuntime().getClass("File").callMethod(context,"open", new IRubyObject[]{args[0],self.getRuntime().newString("r")}); IRubyObject val = self.callMethod(context,"load", io); | public IRubyObject method2(ThreadContext context, IRubyObject self, IRubyObject[] args) { //yaml_load_file IRubyObject io = self.getRuntime().getClass("File").callMethod(context,"open", args[0]); self.callMethod(context,"load", io); io.callMethod(context, "close"); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/121d8287e0a8d27aa18bbefd10a9ebf08fe51d8d/RubyYAML.java/buggy/src/org/jruby/RubyYAML.java |
return io; | return val; | public IRubyObject method2(ThreadContext context, IRubyObject self, IRubyObject[] args) { //yaml_load_file IRubyObject io = self.getRuntime().getClass("File").callMethod(context,"open", args[0]); self.callMethod(context,"load", io); io.callMethod(context, "close"); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/121d8287e0a8d27aa18bbefd10a9ebf08fe51d8d/RubyYAML.java/buggy/src/org/jruby/RubyYAML.java |
w++; | void initStrategies(QuantumDef qd, PixelsType type, ChannelBinding[] waves) { QuantumStrategy stg; double gMin, gMax; List channels = this.metadata.getChannels(); int w = 0; Channel channel; for (Iterator i = channels.iterator(); i.hasNext();) { channel = (Channel) i.next(); stg = QuantumFactory.getStr... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/79a840e814598e78717947e317f85f49fa7de784/QuantumManager.java/clean/components/rendering/src/omeis/providers/re/QuantumManager.java | |
public static QuantumStrategy getStrategy(QuantumDef qd, PixelsType type) | public static QuantumStrategy getStrategy(QuantumDef qd, PixelsType type, IPixels iPixels) | public static QuantumStrategy getStrategy(QuantumDef qd, PixelsType type) { verifyDef(qd, type); QuantumStrategy strg = null; strg = getQuantization(qd,type); if (strg == null) throw new IllegalArgumentException("Unsupported strategy"); return strg; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/QuantumFactory.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumFactory.java |
strg = getQuantization(qd,type); | strg = getQuantization(qd,type, iPixels); | public static QuantumStrategy getStrategy(QuantumDef qd, PixelsType type) { verifyDef(qd, type); QuantumStrategy strg = null; strg = getQuantization(qd,type); if (strg == null) throw new IllegalArgumentException("Unsupported strategy"); return strg; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/QuantumFactory.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumFactory.java |
this(klass, methodName, (Class[])null, false, false); | this(klass, methodName, (Class[]) null, false, false); | public ReflectionCallbackMethod(Class klass, String methodName) { this(klass, methodName, (Class[])null, false, false); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
protected String getExceptedArgsString(RubyObject[] methodArgs) { StringBuffer sb = new StringBuffer(); sb.append("Wrong arguments:"); if (methodArgs.length == 0) { sb.append(" No args"); } else { sb.append(" ("); for (int i = 0; i < methodArgs.le... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java | ||
if (className.charAt(0) == 'A' || className.charAt(0) == 'E' || className.charAt(0) == 'I' || className.charAt(0) == 'O' || className.charAt(0) == 'U') { | if (className.charAt(0) == 'A' || className.charAt(0) == 'E' || className.charAt(0) == 'I' || className.charAt(0) == 'O' || className.charAt(0) == 'U') { | protected String getExceptedArgsString(RubyObject[] methodArgs) { StringBuffer sb = new StringBuffer(); sb.append("Wrong arguments:"); if (methodArgs.length == 0) { sb.append(" No args"); } else { sb.append(" ("); for (int i = 0; i < methodArgs.le... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
protected String getExceptedArgsString(RubyObject[] methodArgs) { StringBuffer sb = new StringBuffer(); sb.append("Wrong arguments:"); if (methodArgs.length == 0) { sb.append(" No args"); } else { sb.append(" ("); for (int i = 0; i < methodArgs.le... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java | ||
protected String getExceptedArgsString(RubyObject[] methodArgs) { StringBuffer sb = new StringBuffer(); sb.append("Wrong arguments:"); if (methodArgs.length == 0) { sb.append(" No args"); } else { sb.append(" ("); for (int i = 0; i < methodArgs.le... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java | ||
throw new RuntimeException("NoSuchMethodException: Cannot get method \"" + methodName + "\" in class \"" + klass.getName() + "\" by Reflection."); | throw new RuntimeException( "NoSuchMethodException: Cannot get method \"" + methodName + "\" in class \"" + klass.getName() + "\" by Reflection."); | protected Method getMethod() { if (method == null) { try { Class[] newArgs = args; if (staticMethod) { newArgs = new Class[args.length + 2]; System.arraycopy(args, 0, newArgs, 2, args.length); newArgs[0] = Ruby.... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
throw new RuntimeException("SecurityException: Cannot get method \"" + methodName + "\" in class \"" + klass.getName() + "\" by Reflection."); | throw new RuntimeException( "SecurityException: Cannot get method \"" + methodName + "\" in class \"" + klass.getName() + "\" by Reflection."); | protected Method getMethod() { if (method == null) { try { Class[] newArgs = args; if (staticMethod) { newArgs = new Class[args.length + 2]; System.arraycopy(args, 0, newArgs, 2, args.length); newArgs[0] = Ruby.... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
System.arraycopy(methodArgs, args.length - 1, restArray, 0, methodArgs.length - (args.length - 1)); | System.arraycopy(methodArgs, args.length - 1, restArray, 0, methodArgs.length - (args.length - 1)); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodA... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
throw new RuntimeException("Cannot call \"" + methodName + "\" in class \"" + klass.getName() + "\". " + getExceptedArgsString((RubyObject[])methodArgs)); | throw new RuntimeException( "Cannot call \"" + methodName + "\" in class \"" + klass.getName() + "\". " + getExceptedArgsString((RubyObject[]) methodArgs)); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodA... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
return (RubyObject)getMethod().invoke(staticMethod ? null : recv, methodArgs); | return (RubyObject) getMethod().invoke(staticMethod ? null : recv, methodArgs); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodA... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
throw (RaiseException)itExcptn.getTargetException(); | throw (RaiseException) itExcptn.getTargetException(); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodA... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
throw (RuntimeException)itExcptn.getTargetException(); | throw (RuntimeException) itExcptn.getTargetException(); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodA... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
itExcptn.getTargetException().printStackTrace(); return ruby.getNil(); | itExcptn.getTargetException().printStackTrace(); return ruby.getNil(); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodA... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0711e7cbb2b441d095c8d8c0838be2b630638c/ReflectionCallbackMethod.java/clean/org/jruby/runtime/ReflectionCallbackMethod.java |
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