rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k | meta stringlengths 141 403 |
|---|---|---|---|
p.setStatus("Away due to idle."); | p.setStatus(Res.getString("message.away.idle")); | private void setIdleListener() throws Exception { final Timer timer = new Timer(); timer.scheduleAtFixedRate(new TimerTask() { public void run() { LocalPreferences localPref = SettingsManager.getLocalPreferences(); int delay = 0; if (localPref.is... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/97917d876023996dcd3bd220e88b62b3f6dcb7fc/SessionManager.java/buggy/src/java/org/jivesoftware/spark/SessionManager.java |
p.setStatus("User has locked their workstation."); | p.setStatus(Res.getString("message.locked.workstation")); | public void run() { LocalPreferences localPref = SettingsManager.getLocalPreferences(); int delay = 0; if (localPref.isIdleOn()) { delay = localPref.getIdleTime() * 60000; } else { return; ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/97917d876023996dcd3bd220e88b62b3f6dcb7fc/SessionManager.java/buggy/src/java/org/jivesoftware/spark/SessionManager.java |
p.setStatus("Away due to idle."); | p.setStatus(Res.getString("message.away.idle")); | public void run() { LocalPreferences localPref = SettingsManager.getLocalPreferences(); int delay = 0; if (localPref.isIdleOn()) { delay = localPref.getIdleTime() * 60000; } else { return; ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/97917d876023996dcd3bd220e88b62b3f6dcb7fc/SessionManager.java/buggy/src/java/org/jivesoftware/spark/SessionManager.java |
Iterator iter = dndList.iterator(); | Iterator iter = statusList.iterator(); | public StatusItem getStatusItem(String label) { Iterator iter = dndList.iterator(); while (iter.hasNext()) { StatusItem item = (StatusItem)iter.next(); if (item.getText().equals(label)) { return item; } } return null; } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/91bb3d356ac7e36b1815118359b4af3a4c14abed/StatusBar.java/buggy/src/java/org/jivesoftware/spark/ui/status/StatusBar.java |
void showClassifications() { getViewport().add(getClassificationComponent()); //add(getClassificationComponent(), BorderLayout.CENTER); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/ClassifierUI.java/clean/SRC/org/openmicroscopy/shoola/agents/util/classifier/view/ClassifierUI.java | ||
fireStateChange(); | public void setRenderingControl(RenderingControl result) { if (model.getState() != LOADING_RENDERING_CONTROL) throw new IllegalStateException( "This method can't be invoked in the LOADING_RENDERING_CONTROL."); model.setRenderingControl(result); //Register the renderer ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3b273af3a5320ab0a054540f14a3c299ff01de69/ImViewerComponent.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/view/ImViewerComponent.java | |
String arg = args[0].convertToString().getValue(); | String arg = args[0].convertToString().toString(); | public static IRubyObject open(IRubyObject recv, IRubyObject[] args) { String arg = args[0].convertToString().getValue(); // Should this logic be pushed into RubyIO Somewhere? if (arg.startsWith("|")) { String command = arg.substring(1); // exec process, create IO with proces... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyKernel.java/clean/src/org/jruby/RubyKernel.java |
if (args[i].isKindOf(ruby.getClasses().getModuleClass())) { | if (! args[i].isKindOf(ruby.getClasses().getModuleClass())) { | private boolean isRescueHandled(RubyException actExcptn, IListNode exceptionNodes) { // TMP_PROTECT; if (exceptionNodes == null) { return actExcptn.isKindOf(ruby.getExceptions().getStandardError()); } Block tmpBlock = ArgsUtil.beginCallArgs(ruby); RubyObject[] args = Ar... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f0907240b4b4a4379424377e971ed0ca23f1dcb/EvaluateVisitor.java/buggy/org/jruby/evaluator/EvaluateVisitor.java |
final Block actBlock = ruby.getBlockStack().getCurrent(); | final Block currentBlock = ruby.getBlockStack().getCurrent(); | public final static Block beginCallArgs(final Ruby ruby) { final Block actBlock = ruby.getBlockStack().getCurrent(); if (ruby.getCurrentIter().isPre()) { ruby.getBlockStack().pop(); } ruby.getIterStack().push(Iter.ITER_NOT); return actBlock; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/385e3f4e7eba5184dfea0a1e9d23b8ab7d46b1a5/ArgsUtil.java/buggy/org/jruby/ast/util/ArgsUtil.java |
return actBlock; | return currentBlock; | public final static Block beginCallArgs(final Ruby ruby) { final Block actBlock = ruby.getBlockStack().getCurrent(); if (ruby.getCurrentIter().isPre()) { ruby.getBlockStack().pop(); } ruby.getIterStack().push(Iter.ITER_NOT); return actBlock; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/385e3f4e7eba5184dfea0a1e9d23b8ab7d46b1a5/ArgsUtil.java/buggy/org/jruby/ast/util/ArgsUtil.java |
public final static void endCallArgs( final Ruby ruby, final Block actBlock) { if (actBlock != null) { ruby.getBlockStack().push(actBlock); | public final static void endCallArgs(Ruby ruby, Block currentBlock) { if (currentBlock != null) { ruby.getBlockStack().push(currentBlock); | public final static void endCallArgs( final Ruby ruby, final Block actBlock) { if (actBlock != null) { // XXX ruby.getBlockStack().push(actBlock); // Refresh the next attribute. } ruby.getIterStack().pop(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/385e3f4e7eba5184dfea0a1e9d23b8ab7d46b1a5/ArgsUtil.java/buggy/org/jruby/ast/util/ArgsUtil.java |
public int getChannelFamily(int arg0) | public Family getChannelFamily(int arg0) | public int getChannelFamily(int arg0) { return delegate.getChannelFamily(arg0); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/RenderingBean.java/buggy/components/ejb/src/ome/ro/ejb/RenderingBean.java |
public int getModel() | public RenderingModel getModel() | public int getModel() { return delegate.getModel(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/RenderingBean.java/buggy/components/ejb/src/ome/ro/ejb/RenderingBean.java |
public void setModel(int arg0) | public void setModel(RenderingModel arg0) | public void setModel(int arg0) { delegate.setModel(arg0); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/RenderingBean.java/buggy/components/ejb/src/ome/ro/ejb/RenderingBean.java |
public void setQuantizationMap(int arg0, int arg1, double arg2, boolean arg3) | public void setQuantizationMap(int arg0, Family arg1, double arg2, boolean arg3) | public void setQuantizationMap(int arg0, int arg1, double arg2, boolean arg3) { delegate.setQuantizationMap(arg0, arg1, arg2, arg3); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b2d1563defffc9fa654271400d754843f42e2810/RenderingBean.java/buggy/components/ejb/src/ome/ro/ejb/RenderingBean.java |
dumpClasses((Clazz[])pack.getClasses().toArray( new Clazz[pack.getClasses().size()])); | dumpClasses((Clazz[])pack.getClasses().toArray(new Clazz[pack.getClasses().size()])); decreaseIndentation(); println("</package>"); | private void dumpPackage(Package pack) { println("<package name=\"" + pack.getName() + "\"" + " line-rate=\"" + pack.getLineCoverageRate() + "\"" + " branch-rate=\"" + pack.getBranchCoverageRate() + "\"" + ">"); increaseIndentation(); dumpClasses((Clazz[])pack.getClasses().toArray( new Clazz[pack.getClasse... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/XMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
private void dumpPackages(Coverage coverage) | private void dumpPackages(CoverageReport coverage) | private void dumpPackages(Coverage coverage) { Iterator it = coverage.getPackages().iterator(); while (it.hasNext()) { dumpPackage((Package)it.next()); } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/XMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
if (numberOfLines == 0) | if (getNumberOfLines() == 0) | public double getLineCoverageRate() { if (numberOfLines == 0) { return 1; } return (double)numberOfCoveredLines / (double)numberOfLines; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/Clazz.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/Clazz.java |
return (double)numberOfCoveredLines / (double)numberOfLines; | return (double)getNumberOfCoveredLines() / (double)getNumberOfLines(); | public double getLineCoverageRate() { if (numberOfLines == 0) { return 1; } return (double)numberOfCoveredLines / (double)numberOfLines; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/Clazz.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/Clazz.java |
if (numberOfBranches == 0) | if (getNumberOfBranches() == 0) | public double getBranchCoverageRate() { if (numberOfBranches == 0) { if (numberOfCoveredLines == 0) { return 0; } return 1; } return (double)numberOfCoveredBranches / (double)numberOfBranches; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/Clazz.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/Clazz.java |
if (numberOfCoveredLines == 0) | if (getNumberOfCoveredLines() == 0) | public double getBranchCoverageRate() { if (numberOfBranches == 0) { if (numberOfCoveredLines == 0) { return 0; } return 1; } return (double)numberOfCoveredBranches / (double)numberOfBranches; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/Clazz.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/Clazz.java |
return (double)numberOfCoveredBranches / (double)numberOfBranches; | return (double)getNumberOfCoveredBranches() / (double)getNumberOfBranches(); | public double getBranchCoverageRate() { if (numberOfBranches == 0) { if (numberOfCoveredLines == 0) { return 0; } return 1; } return (double)numberOfCoveredBranches / (double)numberOfBranches; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/Clazz.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/Clazz.java |
return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/GlobalVarNode.java/clean/src/org/jruby/ast/GlobalVarNode.java |
menu.add(createClassifySubMenu()); | menu.add(new JMenuItem(controller.getAction(HiViewerControl.CLASSIFY))); menu.add(new JMenuItem(controller.getAction( HiViewerControl.DECLASSIFY))); | private JMenu createEditMenu() { JMenu menu = new JMenu("Edit"); menu.setMnemonic(KeyEvent.VK_E); menu.add(new JMenuItem(controller.getAction(HiViewerControl.FIND))); menu.add(new JSeparator(SwingConstants.HORIZONTAL)); menu.add(new JMenuItem(controller.getAction(HiViewerContro... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/HiViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerWin.java |
time.cal = Calendar.getInstance(TimeZone.getTimeZone("GMT")); | time.cal = Calendar.getInstance(TimeZone.getTimeZone(UTC)); | private static RubyTime createTime(IRubyObject type, IRubyObject[] args, boolean gmt) { int len = 6; if (args.length == 10) { args = new IRubyObject[] { args[5], args[4], args[3], args[2], args[1], arg... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ff2657d75cfcff1964e39f97c3ed3c1054b4baef/RubyTime.java/clean/src/org/jruby/RubyTime.java |
callbackFactory.getMethod(RubyTime.class, "hash")); | callbackFactory.getMethod(RubyTime.class, "hash")); | public static RubyClass createTimeClass(Ruby runtime) { RubyClass rubyTimeClass = runtime.defineClass("Time", runtime.getClasses().getObjectClass()); CallbackFactory callbackFactory = runtime.callbackFactory(); rubyTimeClass.defineSingletonMethod("new", callbackFactory.getSingletonMethod(RubyTime... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ff2657d75cfcff1964e39f97c3ed3c1054b4baef/RubyTime.java/clean/src/org/jruby/RubyTime.java |
return RubyBoolean.newBoolean(runtime, cal.getTimeZone().getID().equals("GMT")); | return RubyBoolean.newBoolean(runtime, cal.getTimeZone().getID().equals(UTC)); | public RubyBoolean gmt() { return RubyBoolean.newBoolean(runtime, cal.getTimeZone().getID().equals("GMT")); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ff2657d75cfcff1964e39f97c3ed3c1054b4baef/RubyTime.java/clean/src/org/jruby/RubyTime.java |
cal.setTimeZone(TimeZone.getTimeZone("GMT")); | cal.setTimeZone(TimeZone.getTimeZone(UTC)); | public RubyTime gmtime() { cal.setTimeZone(TimeZone.getTimeZone("GMT")); return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ff2657d75cfcff1964e39f97c3ed3c1054b4baef/RubyTime.java/clean/src/org/jruby/RubyTime.java |
return RubyFixnum.newFixnum(runtime, (int)(cal.get(Calendar.SECOND) ^ usec)); | return RubyFixnum.newFixnum(runtime, (int)(((cal.getTimeInMillis() / 1000) ^ microseconds()) << 1) >> 1); | public RubyFixnum hash() { return RubyFixnum.newFixnum(runtime, (int)(cal.get(Calendar.SECOND) ^ usec)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ff2657d75cfcff1964e39f97c3ed3c1054b4baef/RubyTime.java/clean/src/org/jruby/RubyTime.java |
return RubyFloat.newFloat(runtime, getTimeInMillis() / 1000.0); | return RubyFloat.newFloat(runtime, getTimeInMillis() / 1000 + microseconds() / 1000000.0); | public RubyFloat to_f() { return RubyFloat.newFloat(runtime, getTimeInMillis() / 1000.0); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ff2657d75cfcff1964e39f97c3ed3c1054b4baef/RubyTime.java/clean/src/org/jruby/RubyTime.java |
return RubyFixnum.newFixnum(runtime, getTimeInMillis() % 1000 * 1000 + usec); | return RubyFixnum.newFixnum(runtime, microseconds()); | public RubyInteger usec() { return RubyFixnum.newFixnum(runtime, getTimeInMillis() % 1000 * 1000 + usec); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ff2657d75cfcff1964e39f97c3ed3c1054b4baef/RubyTime.java/clean/src/org/jruby/RubyTime.java |
TreePopupMenuMng(TreePopupMenu view, ClipBoardUI clipBoard) | TreePopupMenuMng(TreePopupMenu view, ClipBoardUI clipBoard, ClipBoardModel model) | TreePopupMenuMng(TreePopupMenu view, ClipBoardUI clipBoard) { if (view == null) throw new IllegalArgumentException("No view."); if (clipBoard == null) throw new IllegalArgumentException("No clipBoard."); this.clipBoard = clipBoard; attachItemListener(view.properties, PROPER... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/TreePopupMenuMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/TreePopupMenuMng.java |
attachItemListener(view.annotate, ANNOTATE); | TreePopupMenuMng(TreePopupMenu view, ClipBoardUI clipBoard) { if (view == null) throw new IllegalArgumentException("No view."); if (clipBoard == null) throw new IllegalArgumentException("No clipBoard."); this.clipBoard = clipBoard; attachItemListener(view.properties, PROPER... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/TreePopupMenuMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/TreePopupMenuMng.java | |
attachItemListener(view.annotate, ANNOTATE); | TreePopupMenuMng(TreePopupMenu view, ClipBoardUI clipBoard) { if (view == null) throw new IllegalArgumentException("No view."); if (clipBoard == null) throw new IllegalArgumentException("No clipBoard."); this.clipBoard = clipBoard; attachItemListener(view.properties, PROPER... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/TreePopupMenuMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/TreePopupMenuMng.java | |
if (object != null) new AnnotateCmd(object).execute(); | if (object != null) { AnnotateCmd cmd = new AnnotateCmd(model.getParentModel(), clipBoard.getSelectedNode()); cmd.execute(); } | public void actionPerformed(ActionEvent e) { int index = -1; DataObject object; try { index = Integer.parseInt(e.getActionCommand()); object = clipBoard.getDataObject(); switch (index) { case PROPERTIES: if (object != null) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/TreePopupMenuMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/TreePopupMenuMng.java |
if (model != null) { | if (model != null && hierarchyObject == null) { | public void execute() { if (model != null) { ImageDisplay selectedDisplay = model.getBrowser(). getSelectedDisplay(); hierarchyObject = (DataObject) selectedDisplay.getHierarchyObject(); } if (hierarchyObject == null) r... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/03010c58165e57243d5a9590a791904493dfeec3/PropertiesCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/PropertiesCmd.java |
model.moveToBack(); | if (model != null) model.moveToBack(); | public void execute() { if (model != null) { ImageDisplay selectedDisplay = model.getBrowser(). getSelectedDisplay(); hierarchyObject = (DataObject) selectedDisplay.getHierarchyObject(); } if (hierarchyObject == null) r... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/03010c58165e57243d5a9590a791904493dfeec3/PropertiesCmd.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/PropertiesCmd.java |
Log.error("Unable to load plugin " + name + " due to min version incompatibility."); | public Collection getPluginList(InputStream response) { final List pluginList = new ArrayList(); SAXReader saxReader = new SAXReader(); Document pluginXML = null; try { pluginXML = saxReader.read(response); } catch (DocumentException e) { Log.error(e);... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/16b62c86e7c19476e9f5094fb88d91bc3da3360a/PluginViewer.java/buggy/src/java/org/jivesoftware/sparkimpl/plugin/viewer/PluginViewer.java | |
return "1.1.9.2"; | return "1.1.9.3"; | public static String getVersion() { return "1.1.9.2"; } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/0807e1b794eeaa6c07d31a5c351697146a85040b/JiveInfo.java/buggy/src/java/org/jivesoftware/sparkimpl/settings/JiveInfo.java |
int[] rgba, int alpha, int index) | int[] rgba, int index) | ColorChooserManager(ColorChooser view, HSBPaneManager hsbManager, int[] rgba, int alpha, int index) { this.view = view; this.hsbManager = hsbManager; this.alpha = alpha; this.rgba = rgba; this.index = index; initColor(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5bb26faa9c073c259106cdbdd8e0f710624321f0/ColorChooserManager.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/model/ColorChooserManager.java |
this.alpha = alpha; | this.alpha = rgba[ColorChooser.ALPHA]; | ColorChooserManager(ColorChooser view, HSBPaneManager hsbManager, int[] rgba, int alpha, int index) { this.view = view; this.hsbManager = hsbManager; this.alpha = alpha; this.rgba = rgba; this.index = index; initColor(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5bb26faa9c073c259106cdbdd8e0f710624321f0/ColorChooserManager.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/model/ColorChooserManager.java |
setImages( new HashSet( d.eachLinkedImage( block ))); setProjects( new HashSet( d.eachLinkedProject( block ))); setAnnotations( new HashSet( d.collectAnnotations( block ))); | setImages( makeSet( d.sizeOfImageLinks(), d.eachLinkedImage( block ))); setProjects( makeSet( d.sizeOfProjectLinks(), d.eachLinkedProject( block ))); setAnnotations( makeSet( d.sizeOfAnnotations(), d.collectAnnotations( block ))); | public void copy(IObject model, ModelMapper mapper) { if (model instanceof Dataset) { Dataset d = (Dataset) model; super.copy(model,mapper); // Details if (d.getDetails() != null){ Details details = d.getDetails(); this.setOwner((E... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9638b50efec05ce0b3d19bbef1c149c757b964aa/DatasetData.java/clean/components/shoola-adapter/src/pojos/DatasetData.java |
case M_ID: return id(); | public IRubyObject callIndexed(int index, IRubyObject[] args) { switch (index) { case M_TO_F: return to_f(); case M_TO_S: return to_s(); case M_OP_LSHIFT: return op_lshift(args[0]); case M_OP_RSHIFT: return op_rshift(args[0]); cas... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a33fc547e26999709256db0c7da831fd8ed14d1c/RubyFixnum.java/clean/org/jruby/RubyFixnum.java | |
fixnumClass.defineMethod("id", IndexedCallback.create(M_ID, 0)); | public static RubyClass createFixnumClass(Ruby ruby) { RubyClass fixnumClass = ruby.defineClass("Fixnum", ruby.getClasses().getIntegerClass()); fixnumClass.includeModule(ruby.getClasses().getPrecisionModule()); fixnumClass.defineSingletonMethod("induced_from", CallbackFactory.getSingletonMethod... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a33fc547e26999709256db0c7da831fd8ed14d1c/RubyFixnum.java/clean/org/jruby/RubyFixnum.java | |
public DatasetAnnotation(Integer attributeId, String content, Boolean valid, org.openmicroscopy.omero.model.Dataset dataset, org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { this.attributeId = attributeId; this.content = content; this.valid = valid; this.dataset = dataset; this.moduleExecution = module... | public DatasetAnnotation() { | public DatasetAnnotation(Integer attributeId, String content, Boolean valid, org.openmicroscopy.omero.model.Dataset dataset, org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { this.attributeId = attributeId; this.content = content; this.valid = valid; this.dataset = datase... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DatasetAnnotation.java/buggy/components/common/src/org/openmicroscopy/omero/model/DatasetAnnotation.java |
public org.openmicroscopy.omero.model.Dataset getDataset() { | public Dataset getDataset() { | public org.openmicroscopy.omero.model.Dataset getDataset() { return this.dataset; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DatasetAnnotation.java/buggy/components/common/src/org/openmicroscopy/omero/model/DatasetAnnotation.java |
public org.openmicroscopy.omero.model.ModuleExecution getModuleExecution() { | public ModuleExecution getModuleExecution() { | public org.openmicroscopy.omero.model.ModuleExecution getModuleExecution() { return this.moduleExecution; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DatasetAnnotation.java/buggy/components/common/src/org/openmicroscopy/omero/model/DatasetAnnotation.java |
public void setDataset(org.openmicroscopy.omero.model.Dataset dataset) { | public void setDataset(Dataset dataset) { | public void setDataset(org.openmicroscopy.omero.model.Dataset dataset) { this.dataset = dataset; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DatasetAnnotation.java/buggy/components/common/src/org/openmicroscopy/omero/model/DatasetAnnotation.java |
public void setModuleExecution(org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { | public void setModuleExecution(ModuleExecution moduleExecution) { | public void setModuleExecution(org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { this.moduleExecution = moduleExecution; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DatasetAnnotation.java/buggy/components/common/src/org/openmicroscopy/omero/model/DatasetAnnotation.java |
return runtime.newFixnum(iVisited.getValue()); | return iVisited.getFixnum(runtime); | private static IRubyObject evalInternal(ThreadContext context, Node node, IRubyObject self) { IRuby runtime = context.getRuntime(); bigloop: do { if (node == null) return runtime.getNil(); switch (node.nodeId) { case NodeTypes.ALIASNODE: { AliasN... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/6b4693d0592a3a856c70b2a8ea7ffb3ceb398f5c/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java |
return variable == null || variable.getAccessor() instanceof UndefinedAccessor; | return variable != null && variable.getAccessor() instanceof UndefinedAccessor; | public boolean isDefined(String name) { Asserts.notNull(name); Asserts.isTrue(name.startsWith("$")); GlobalVariable variable = (GlobalVariable)globalVariables.get(name); return variable == null || variable.getAccessor() instanceof UndefinedAccessor; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/44202c7c4496a9d93a130961952235c60934e5ee/GlobalVariables.java/buggy/src/org/jruby/internal/runtime/GlobalVariables.java |
String scope = ArticleUtil.getArticleRootPath(); | String scope = ArticleUtil.getArticleBaseFolderPath(); | public List listArticles() throws XmlException, IOException{ List list = new ArrayList(); IWContext iwc = IWContext.getInstance(); try { String scope = ArticleUtil.getArticleRootPath(); IWSlideSession session = (IWSlideSession)IBOLookup.getSessionInstance(iwc,IWSlideSession.class); if(scope != null){ ... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/9dd8a7f9883fa3785baebfbed97ebf38eba1add9/SearchArticleBean.java/clean/src/java/com/idega/block/article/bean/SearchArticleBean.java |
setBounds(X_LOCATION, Y_LOCATION, WIN_WIDTH, WIN_HEIGHT); | ViewerUIF(ViewerCtrl control, Registry registry) { //name, resizable, closable, maximizable, iconifiable. super("Viewer", true, true, true, true); this.control = control; this.registry = registry; setJMenuBar(createMenuBar()); buildGUI(); //set the size and position the window. setBounds(X_LOCATION, Y_LOCATION... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e717f628b707987e5b693ea9d57b6ef34b300679/ViewerUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/viewer/ViewerUIF.java | |
int w = canvas.getIconWidth()+EXTRA; int h = canvas.getIconHeight()+EXTRA; if (w > WIN_WIDTH) w = WIN_WIDTH; if (h > WIN_HEIGHT) h = WIN_HEIGHT; setSize(w, h); | void setImage(BufferedImage img) { canvas.display(img); revalidate(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e717f628b707987e5b693ea9d57b6ef34b300679/ViewerUIF.java/clean/SRC/org/openmicroscopy/shoola/agents/viewer/ViewerUIF.java | |
manager = new ImageCanvasMng(this); | manager = new ImageCanvasMng(this, control); | public ImageCanvas(ViewerUIF view, ViewerCtrl control) { this.view = view; this.control = control; filters = new ArrayList(); manager = new ImageCanvasMng(this); magFactor = 1.0; setBackground(Viewer.BACKGROUND_COLOR); setDoubleBuffered(true); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/637cfc480ca0f34d360e30b6cf903cef502fa8dc/ImageCanvas.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/canvas/ImageCanvas.java |
setBorder(BorderFactory.createEtchedBorder()); JPanel p = new JPanel(); p.setLayout(new BoxLayout(p, BoxLayout.X_AXIS)); p.add(statusButton); p.add(status); add(UIUtilities.buildComponentPanel(p)); JPanel progress = new JPanel(); progress.setLayout(new BoxLayout(progress, BoxLayout.X_AXIS)); progress.add(progressBar); ... | setBorder(BorderFactory.createEtchedBorder()); add(status); JPanel progress = new JPanel(); progress.setLayout(new BoxLayout(progress, BoxLayout.X_AXIS)); progress.add(progressBar); IconManager icons = IconManager.getInstance(); progress.add(new JLabel(icons.getIcon(IconManager.PROGRESS))); add(UIUtilities.buildCompone... | private void buildUI() { setLayout(new BoxLayout(this, BoxLayout.X_AXIS)); setBorder(BorderFactory.createEtchedBorder()); JPanel p = new JPanel(); p.setLayout(new BoxLayout(p, BoxLayout.X_AXIS)); p.add(statusButton); p.add(status); add(UIUtilities.buildComponentPanel(p)); JPanel progress = new JPanel(); progr... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d165d84615e7f90ee0847be9809fedfd2c53fadc/StatusBar.java/clean/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/StatusBar.java |
status = new JLabel(); statusButton = new JButton(icons.getIcon(IconManager.INFO)); statusButton.setBorder(null); statusButton.setBorderPainted(false); statusButton.setFocusPainted(false); statusButton.setOpaque(false); | status = new JLabel(icons.getIcon(IconManager.INFO)); | private void initComponents() { IconManager icons = IconManager.getInstance(); progressBar = new JProgressBar(); progressBar.setIndeterminate(true); progressBar.setVisible(false); status = new JLabel(); statusButton = new JButton(icons.getIcon(IconManager.INFO)); statusButton.setBorder(null); statusButton.setB... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d165d84615e7f90ee0847be9809fedfd2c53fadc/StatusBar.java/clean/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/StatusBar.java |
void writeEntry(int tag, int fieldType, int count, int value) | private void writeEntry(int tag, int fieldType, int count, int value) | void writeEntry(int tag, int fieldType, int count, int value) throws IOException { output.writeShort(tag); output.writeShort(fieldType); output.writeInt(count); if (count == 1 && fieldType == TIFFEncoderCst.SHORT) value <<= 16; //left justify 16-bit values ou... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c6482863aab2726a4e7e2791983dabc68962687a/TIFFEncoder.java/buggy/SRC/org/openmicroscopy/shoola/util/image/io/TIFFEncoder.java |
int bytesWritten = 0; int size = imageWidth*imageHeight*3; int count = imageWidth*24; byte[] buffer = new byte[count]; int i, j; DataBufferByte bufferByte = (DataBufferByte) image.getRaster().getDataBuffer(); byte[] red = bufferByte.getData(Encoder.RED_BAND); byte[] green = bufferByte.getData(Encoder.GREEN_BAND); byte... | DataBuffer db = image.getRaster().getDataBuffer(); if (db instanceof DataBufferByte) writeRGBDataBufferByte((DataBufferByte) db); else if (db instanceof DataBufferInt) writeRGBDataBufferInt((DataBufferInt) db); | private void writeRGBPixels() throws IOException { int bytesWritten = 0; int size = imageWidth*imageHeight*3; int count = imageWidth*24; //3*8 byte[] buffer = new byte[count]; int i, j; DataBufferByte bufferByte = (DataBufferByte) image.getRaster().ge... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c6482863aab2726a4e7e2791983dabc68962687a/TIFFEncoder.java/buggy/SRC/org/openmicroscopy/shoola/util/image/io/TIFFEncoder.java |
output.writeInt((int)(xscale*scale)); output.writeInt((int)scale); output.writeInt((int)(yscale*scale)); output.writeInt((int)scale); | output.writeInt((int) (xscale*scale)); output.writeInt((int) scale); output.writeInt((int) (yscale*scale)); output.writeInt((int) scale); | private void writeScale() throws IOException { double xscale = 1.0/imageWidth; double yscale = 1.0/imageHeight; double scale = 1000000.0; if (xscale > 1000.0) scale = 1000.0; output.writeInt((int)(xscale*scale)); output.writeInt((int)scale); output.writeInt... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c6482863aab2726a4e7e2791983dabc68962687a/TIFFEncoder.java/buggy/SRC/org/openmicroscopy/shoola/util/image/io/TIFFEncoder.java |
{ int index = Integer.parseInt(e.getActionCommand()); try { switch (index) { case SAVE: saveDisplayOptions(); break; case RESET_DEFAULTS: resetDefaults(); break; case GREY: case RGB: case HSB: activateRenderingModel(index); break; } } catch(NumberFormatException nfe) { throw new Error("Invalid Action ID "+index, nfe); ... | { int index = Integer.parseInt(e.getActionCommand()); try { switch (index) { case SAVE: saveDisplayOptions(); break; case RESET_DEFAULTS: resetDefaults(); break; case GREY: case RGB: case HSB: activateRenderingModel(index); break; } } catch(NumberFormatException nfe) { throw new Error("Invalid Action ID "+index, nfe); ... | public void actionPerformed(ActionEvent e) { int index = Integer.parseInt(e.getActionCommand()); try { switch (index) { case SAVE: saveDisplayOptions(); break; case RESET_DEFAULTS: resetDefaults(); break; case GREY: case RGB: case HSB: activateRenderingModel(index); break; ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ ModelPane rnd = (ModelPane) renderersPool.get(c); if (rnd == null) { rnd = createRenderer(c); rnd.setEventManager(this); renderersPool.put(c, rnd); } return rnd; } | { ModelPane rnd = (ModelPane) renderersPool.get(c); if (rnd == null) { rnd = createRenderer(c); rnd.setEventManager(this); renderersPool.put(c, rnd); } return rnd; } | private ModelPane activate(Class c) { ModelPane rnd = (ModelPane) renderersPool.get(c); if (rnd == null) { rnd = createRenderer(c); rnd.setEventManager(this); renderersPool.put(c, rnd); } return rnd; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ Class c = getRendererClass(i); presentation.setModelPane(activate(c), true); QuantumPane qp = presentation.getQuantumPane(); if (i == GREY) { qp.setSelectionWavelengthsEnable(false); ChannelData[] channelData = getChannelData(); for (int j = 0; j < channelData.length; j++) { if (isActive(j)) { qp.setSelectedWavelengt... | { Class c = getRendererClass(i); presentation.setModelPane(activate(c), true); QuantumPane qp = presentation.getQuantumPane(); if (i == GREY) { qp.setSelectionWavelengthsEnable(false); ChannelData[] channelData = getChannelData(); for (int j = 0; j < channelData.length; j++) { if (isActive(j)) { qp.setSelectedWavelengt... | public void activateRenderingModel(int i) { Class c = getRendererClass(i); presentation.setModelPane(activate(c), true); QuantumPane qp = presentation.getQuantumPane(); if (i == GREY) { qp.setSelectionWavelengthsEnable(false); ChannelData[] channelData = getChannelData(); for (int j = 0; j < channelData.leng... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.addCodomainMap(ctx); } | { abstraction.addCodomainMap(ctx); } | public void addCodomainMap(CodomainMapContext ctx) { abstraction.addCodomainMap(ctx); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ ModelPane model = null; try { model = (ModelPane) c.newInstance(); } catch(Exception e) { String msg = "Can't create an instance of "+c.getName(); throw new InternalError(msg, e); } return model; } | { ModelPane model = null; try { model = (ModelPane) c.newInstance(); } catch(Exception e) { String msg = "Can't create an instance of "+c.getName(); throw new InternalError(msg, e); } return model; } | private ModelPane createRenderer(Class c) { ModelPane model = null; try { model = (ModelPane) c.newInstance(); } catch(Exception e) { String msg = "Can't create an instance of "+c.getName(); throw new InternalError(msg, e); } return model; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ if (qpManager != null) qpManager.disposeDialogs(); } | { if (qpManager != null) qpManager.disposeDialogs(); } | void disposeDialogs() { // forward event to the quantumManager. if (qpManager != null) qpManager.disposeDialogs(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ return abstraction.getChannelStats(w); } | { return abstraction.getChannelStats(w); } | public PixelsStatsEntry[] getChannelStats(int w) { return abstraction.getChannelStats(w); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ return activate(getRendererClass(abstraction.getModel())); } | { return activate(getRendererClass(abstraction.getModel())); } | ModelPane getModelPane() { return activate(getRendererClass(abstraction.getModel())); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ return presentation; } | { return presentation; } | public RenderingAgtUIF getReferenceFrame() { return presentation; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ Class result = null; try { switch (index) { case GREY: result = GreyScalePane.class; modelType = "Grey"; modelIcon = im.getIcon(IconManager.GREYSCALE); break; case HSB: result = HSBPane.class; modelType = "HSB"; modelIcon = im.getIcon(IconManager.HSB); break; case RGB: result = RGBPane.class; modelType = "RGB"; model... | { Class result = null; try { switch (index) { case GREY: result = GreyScalePane.class; modelType = "Grey"; modelIcon = im.getIcon(IconManager.GREYSCALE); break; case HSB: result = HSBPane.class; modelType = "HSB"; modelIcon = im.getIcon(IconManager.HSB); break; case RGB: result = RGBPane.class; modelType = "RGB"; model... | private Class getRendererClass(int index) { Class result = null; try { switch (index) { case GREY: result = GreyScalePane.class; modelType = "Grey"; modelIcon = im.getIcon(IconManager.GREYSCALE); break; case HSB: result = HSBPane.class; modelType = "HSB"; modelIcon = im.getIcon(Ic... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.removeCodomainMap(ctx); } | { abstraction.removeCodomainMap(ctx); } | public void removeCodomainMap(CodomainMapContext ctx) { abstraction.removeCodomainMap(ctx); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.resetDefaults(); qpManager.resetDefaults(); QuantumPane qp = presentation.getQuantumPane(); qp.setSelectionWavelengthsEnable(false); presentation.resetGUI(activate(getRendererClass(GREY))); } | { abstraction.resetDefaults(); qpManager.resetDefaults(); QuantumPane qp = presentation.getQuantumPane(); qp.setSelectionWavelengthsEnable(false); presentation.resetGUI(activate(getRendererClass(GREY))); } | public void resetDefaults() { //update the rendering control. abstraction.resetDefaults(); //update the view. qpManager.resetDefaults(); //reset the model pane QuantumPane qp = presentation.getQuantumPane(); qp.setSelectionWavelengthsEnable(false); presentation.resetGUI(activate(getRendererClass(GREY))); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.saveDisplayOptions(); } | { abstraction.saveDisplayOptions(); } | public void saveDisplayOptions() { abstraction.saveDisplayOptions(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ if (active) { presentation.getQuantumPane().setSelectedWavelength(w); presentation.getTabs().setSelectedIndex(RenderingAgtUIF.POS_MODEL); } abstraction.setActive(w, active); } | { if (active) { presentation.getQuantumPane().setSelectedWavelength(w); presentation.getTabs().setSelectedIndex(RenderingAgtUIF.POS_MODEL); } abstraction.setActive(w, active); } | public void setActive(int w, boolean active) { if (active) { presentation.getQuantumPane().setSelectedWavelength(w); presentation.getTabs().setSelectedIndex(RenderingAgtUIF.POS_MODEL); } abstraction.setActive(w, active); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.setChannelWindowEnd(w, x); } | { abstraction.setChannelWindowEnd(w, x); } | public void setChannelWindowEnd(int w, int x) { abstraction.setChannelWindowEnd(w, x); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.setChannelWindowStart(w, x); } | { abstraction.setChannelWindowStart(w, x); } | public void setChannelWindowStart(int w, int x) { abstraction.setChannelWindowStart(w, x); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.setCodomainLowerBound(x); } | { abstraction.setCodomainLowerBound(x); } | public void setCodomainLowerBound(int x) { abstraction.setCodomainLowerBound(x); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.setCodomainUpperBound(x); } | { abstraction.setCodomainUpperBound(x); } | public void setCodomainUpperBound(int x) { abstraction.setCodomainUpperBound(x); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ presentation.setMappingPane(); } | { presentation.setMappingPane(); } | public void setMappingPane() { presentation.setMappingPane(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ this.presentation = presentation; } | { this.presentation = presentation; } | void setPresentation(RenderingAgtUIF presentation) { this.presentation = presentation; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
public void setQuantumStrategy(double k, int family, int resolution) { abstraction.setQuantumStrategy(k, family, resolution); } | public void setQuantumStrategy(int resolution, boolean b) { abstraction.setQuantumStrategy(resolution, b); } | public void setQuantumStrategy(double k, int family, int resolution) { abstraction.setQuantumStrategy(k, family, resolution); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.setRGBA(w, red, green, blue, alpha); } | { abstraction.setRGBA(w, red, green, blue, alpha); } | public void setRGBA(int w, int red, int green, int blue, int alpha) { abstraction.setRGBA(w, red, green, blue, alpha); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.updateChannelData(cd); } | { abstraction.updateChannelData(cd); } | public void updateChannelData(ChannelData cd) { abstraction.updateChannelData(cd); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ abstraction.updateCodomainMap(ctx); } | { abstraction.updateCodomainMap(ctx); } | public void updateCodomainMap(CodomainMapContext ctx) { abstraction.updateCodomainMap(ctx); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ tabs.remove(POS_MODEL); modelPane.removeAll(); modelPane = pane; modelPane.buildComponent(); tabs.insertTab(control.getModelType()+" Model", control.getModelIcon(), modelPane, null, POS_MODEL); if (b) tabs.setSelectedIndex(POS_MODEL); } | { tabs.remove(POS_MODEL); modelPane.removeAll(); modelPane = pane; modelPane.buildComponent(); tabs.insertTab(control.getModelType()+" Model", control.getModelIcon(), modelPane, null, POS_MODEL); if (b) tabs.setSelectedIndex(POS_MODEL); } | void setModelPane(ModelPane pane, boolean b) { tabs.remove(POS_MODEL); modelPane.removeAll(); modelPane = pane; modelPane.buildComponent(); tabs.insertTab(control.getModelType()+" Model", control.getModelIcon(), modelPane, null, POS_MODEL); if (b) tabs.setSelectedIndex(POS_MODEL); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ renderingControl.setModel(model); refreshImage(); } | { renderingControl.setModel(model); refreshImage(); } | void setModel(int model) { renderingControl.setModel(model); refreshImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ renderingControl.addCodomainMap(ctx); refreshImage(); } | { renderingControl.addCodomainMap(ctx); refreshImage(); } | void addCodomainMap(CodomainMapContext ctx) { renderingControl.addCodomainMap(ctx); refreshImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ DomainPaneManager dpm = view.getDomainPane().getManager(); dpm.disposeDialogs(); } | { DomainPaneManager dpm = view.getDomainPane().getManager(); dpm.disposeDialogs(); } | public void disposeDialogs() { DomainPaneManager dpm = view.getDomainPane().getManager(); dpm.disposeDialogs(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/QuantumPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/QuantumPaneManager.java |
{ PixelsStatsEntry[] channelStats = new PixelsStatsEntry[pxsDims.sizeT]; for (int t = 0; t < pxsDims.sizeT; t++) channelStats[t] = pxsStats.getEntry(w, t); return channelStats; } | { PixelsStatsEntry[] channelStats = new PixelsStatsEntry[pxsDims.sizeT]; for (int t = 0; t < pxsDims.sizeT; t++) channelStats[t] = pxsStats.getEntry(w, t); return channelStats; } | PixelsStatsEntry[] getChannelStats(int w) { PixelsStatsEntry[] channelStats = new PixelsStatsEntry[pxsDims.sizeT]; for (int t = 0; t < pxsDims.sizeT; t++) channelStats[t] = pxsStats.getEntry(w, t); return channelStats; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ return renderingControl.getChannelWindowEnd(w); } | { return renderingControl.getChannelWindowEnd(w); } | double getChannelWindowEnd(int w) { return renderingControl.getChannelWindowEnd(w); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ return renderingControl.getChannelWindowStart(w); } | { return renderingControl.getChannelWindowStart(w); } | double getChannelWindowStart(int w) { return renderingControl.getChannelWindowStart(w); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ return pxsStats.getGlobalEntry(w).globalMax; } | { return pxsStats.getGlobalEntry(w).globalMax; } | double getGlobalChannelWindowEnd(int w) { return pxsStats.getGlobalEntry(w).globalMax; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ return pxsStats.getGlobalEntry(w).globalMin; } | { return pxsStats.getGlobalEntry(w).globalMin; } | double getGlobalChannelWindowStart(int w) { return pxsStats.getGlobalEntry(w).globalMin; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ renderingControl.removeCodomainMap(ctx); refreshImage(); } | { renderingControl.removeCodomainMap(ctx); refreshImage(); } | void removeCodomainMap(CodomainMapContext ctx) { renderingControl.removeCodomainMap(ctx); refreshImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ renderingControl.resetDefaults(); refreshImage(); } | { renderingControl.resetDefaults(); refreshImage(); } | void resetDefaults() { renderingControl.resetDefaults(); refreshImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ DomainPaneManager dpm = view.getDomainPane().getManager(); dpm.resetDefaults(); CodomainPaneManager cpm = view.getCodomainPane().getManager(); cpm.resetDefaults(); view.getGRPane().removeAll(); GraphicsRepresentation gr = view.getGRepresentation(); gr = null; int mini = (int) eventManager.getGlobalChannelWindowS... | { DomainPaneManager dpm = view.getDomainPane().getManager(); dpm.resetDefaults(); CodomainPaneManager cpm = view.getCodomainPane().getManager(); cpm.resetDefaults(); view.getGRPane().removeAll(); GraphicsRepresentation gr = view.getGRepresentation(); gr = null; int mini = (int) eventManager.getGlobalChannelWindowS... | public void resetDefaults() { //DomainPane+Histogram DomainPaneManager dpm = view.getDomainPane().getManager(); dpm.resetDefaults(); //Codomain CodomainPaneManager cpm = view.getCodomainPane().getManager(); cpm.resetDefaults(); //Graphics representation view.getGRPane().removeAll(); GraphicsRepresentation... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/QuantumPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/QuantumPaneManager.java |
{ setModelPane(pane, false); setMappingPane(); } | { setModelPane(pane, false); setMappingPane(); } | void resetGUI(ModelPane pane) { setModelPane(pane, false); setMappingPane(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ renderingControl.saveCurrentSettings(); String msg = "The settings have now been saved, Note that the " + "parameters set in \"options\" haven't been saved."; registry.getUserNotifier().notifyInfo("Rendering", msg); } | { renderingControl.saveCurrentSettings(); } | void saveDisplayOptions() { renderingControl.saveCurrentSettings(); String msg = "The settings have now been saved, Note that the " + "parameters set in \"options\" haven't been saved."; registry.getUserNotifier().notifyInfo("Rendering", msg); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ renderingControl.setActive(w, active); refreshImage(); } | { renderingControl.setActive(w, active); refreshImage(); } | void setActive(int w, boolean active) { renderingControl.setActive(w, active); refreshImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
{ double start = renderingControl.getChannelWindowStart(w); renderingControl.setChannelWindow(w, start, x); refreshImage(); } | { double start = renderingControl.getChannelWindowStart(w); renderingControl.setChannelWindow(w, start, x); refreshImage(); } | void setChannelWindowEnd(int w, double x) { double start = renderingControl.getChannelWindowStart(w); renderingControl.setChannelWindow(w, start, x); refreshImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgt.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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