rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k | meta stringlengths 141 403 |
|---|---|---|---|
OMEModel o = (OMEModel) session.load(klazz,id); BaseModelUtils u = o.getUtils(); return o; | Criteria c = session.createCriteria(klazz); c.add(Expression.ilike("name",name,MatchMode.ANYWHERE)); return c.uniqueResult(); | public Object doInHibernate(Session session) throws HibernateException { OMEModel o = (OMEModel) session.load(klazz,id); BaseModelUtils u = o.getUtils(); return o; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/00ef5f18481d04aa649d8ea20819b4b7bb9c2f28/GenericDaoHibernate.java/buggy/components/server/src/org/openmicroscopy/omero/logic/GenericDaoHibernate.java |
Criteria c = session.createCriteria(klazz); c.add(Expression.ilike("name",name,MatchMode.ANYWHERE)); return c.uniqueResult(); | Criteria c = session.createCriteria(example.getClass()); c.add(Example.create(example)); return c.list(); | public Object doInHibernate(Session session) throws HibernateException { Criteria c = session.createCriteria(klazz); c.add(Expression.ilike("name",name,MatchMode.ANYWHERE)); return c.uniqueResult(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/00ef5f18481d04aa649d8ea20819b4b7bb9c2f28/GenericDaoHibernate.java/buggy/components/server/src/org/openmicroscopy/omero/logic/GenericDaoHibernate.java |
for (Object o : objects){ session.saveOrUpdate(o); } return null; | OMEModel o = (OMEModel) session.load(klazz,id); BaseModelUtils u = o.getUtils(); return o; | public Object doInHibernate(Session session) throws HibernateException { for (Object o : objects){ session.saveOrUpdate(o); } return null; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/00ef5f18481d04aa649d8ea20819b4b7bb9c2f28/GenericDaoHibernate.java/buggy/components/server/src/org/openmicroscopy/omero/logic/GenericDaoHibernate.java |
return newBignum(input.getRuby(), value); | return newBignum(input.getRuntime(), value); | public static RubyBignum unmarshalFrom(UnmarshalStream input) throws IOException { int signum = (input.readUnsignedByte() == '+' ? 1 : -1); int shortLength = input.unmarshalInt(); byte[] digits = new byte[shortLength * 2]; for (int i = digits.length - 1; i >= 0; i--) { digits[... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/RubyBignum.java/clean/org/jruby/RubyBignum.java |
return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ZArrayNode.java/clean/src/org/jruby/ast/ZArrayNode.java |
FastWriter fw = new FastWriter(os, "UTF8"); | FastWriter fw = new FastWriter(os, context.getEncoding()); | final public Object evaluate(Context context) throws ContextException { try { ByteArrayOutputStream os = new ByteArrayOutputStream(256); FastWriter fw = new FastWriter(os, "UTF8"); write(fw,context); fw.flush(); return os.toString("UTF8"); } catch(IOException ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/9dc4324fb914abcbf2ec188e4eb77b1bf503f330/ParseDirective.java/buggy/webmacro/src/org/webmacro/engine/ParseDirective.java |
return os.toString("UTF8"); | return os.toString(context.getEncoding()); | final public Object evaluate(Context context) throws ContextException { try { ByteArrayOutputStream os = new ByteArrayOutputStream(256); FastWriter fw = new FastWriter(os, "UTF8"); write(fw,context); fw.flush(); return os.toString("UTF8"); } catch(IOException ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/9dc4324fb914abcbf2ec188e4eb77b1bf503f330/ParseDirective.java/buggy/webmacro/src/org/webmacro/engine/ParseDirective.java |
public void setColumnNames(String[] colNames){ _colNames = colNames; } | public void setColumnNames(String[] colNames){ if (_caseSensitive){ _colNames = colNames; } else { _colNames = new String[colNames.length]; for (int i=0; i<colNames.length; i++){ _colNames[i] = colNames[i].toUpperCase(); } } } | public void setColumnNames(String[] colNames){ _colNames = colNames; } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/5729b41ccfce450fabc642c0d322460672dd0ddb/SimpleDataTable.java/buggy/contrib/DataTable/org/webmacro/datatable/SimpleDataTable.java |
setFolderLocation(null); | public void clear() { super.clear(); setHeadline(null); setTeaser(null); setBody(null); setAuthor(null); setSource(null); setComment(null); setImages(null); setFilename(null);// setFolderLocation(null); _isUpdated = false; } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/7493a23b4d95bba0468c9c8438a4f930b908ebf1/ArticleItemBean.java/clean/src/java/com/idega/block/article/bean/ArticleItemBean.java | |
tryPublish(); | public Boolean storeArticle() { try { store(); }catch(ArticleStoreException e) { return new Boolean(false); } return new Boolean(true); } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/7493a23b4d95bba0468c9c8438a4f930b908ebf1/ArticleItemBean.java/clean/src/java/com/idega/block/article/bean/ArticleItemBean.java | |
if (pixelSizeX <= 0) | if (pixelSizeX < 0) | public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/79f5ec9546333e90817b776c99deb818af0b588c/PixelsDimensions.java/clean/SRC/org/openmicroscopy/shoola/env/rnd/metadata/PixelsDimensions.java |
if (pixelSizeY <= 0) | if (pixelSizeY < 0) | public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/79f5ec9546333e90817b776c99deb818af0b588c/PixelsDimensions.java/clean/SRC/org/openmicroscopy/shoola/env/rnd/metadata/PixelsDimensions.java |
if (pixelSizeZ <= 0) | if (pixelSizeZ < 0) | public PixelsDimensions(int sizeX, int sizeY, int sizeZ, int sizeW, int sizeT, double pixelSizeX, double pixelSizeY, double pixelSizeZ) { if (sizeX <= 0 || sizeY <= 0 || sizeZ <= 0) throw new IllegalArgumentException( "Spatial dimensions must be positive."); if (sizeW < 1) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/79f5ec9546333e90817b776c99deb818af0b588c/PixelsDimensions.java/clean/SRC/org/openmicroscopy/shoola/env/rnd/metadata/PixelsDimensions.java |
ProviderManager.addIQProvider(Gateway.ELEMENT_NAME, Gateway.NAMESPACE, new Gateway.Provider()); | public void initialize() { SwingWorker thread = new SwingWorker() { public Object construct() { try { populateTransports(SparkManager.getConnection()); } catch (Exception e) { Log.error(e); return... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/6c0051f92a99737d42226d1e696824d21ec0dcd2/GatewayPlugin.java/clean/src/java/org/jivesoftware/sparkimpl/plugin/gateways/GatewayPlugin.java | |
Presence presence = statusBar.getPresence(); | Presence oldPresence = statusBar.getPresence(); Presence presence = new Presence(oldPresence.getType(), oldPresence.getStatus(), oldPresence.getPriority(), oldPresence.getMode()); | public GatewayButton(final Transport transport) { setLayout(new GridBagLayout()); setOpaque(false); this.transport = transport; final StatusBar statusBar = SparkManager.getWorkspace().getStatusBar(); final JPanel commandPanel = statusBar.getCommandPanel(); button.setIcon(tr... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/65023340f7287fee8d2f1535446bf62c3ed50749/GatewayButton.java/buggy/src/java/org/jivesoftware/sparkimpl/plugin/gateways/GatewayButton.java |
if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromException(e); } | if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromException(e); | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
try { | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java | |
ClassLoader classLoader = runtime.getJavaSupport().getJavaClassLoader(); String xname = name.replace('\\', '/'); if (xname.charAt(0) == '/') { URL loc = classLoader.getResource(xname); | } catch (AccessControlException accessEx) { } catch (IllegalArgumentException illArgEx) { } | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
if (isRequireable(loc)) { return new LoadServiceResource(loc, loc.getPath()); | ClassLoader classLoader = runtime.getJavaSupport().getJavaClassLoader(); String xname = name.replace('\\', '/'); if (xname.charAt(0) == '/') { URL loc = classLoader.getResource(xname); if (isRequireable(loc)) { return new LoadServiceResource(loc, loc.getPath()); } } for (Iterator pathIter = loadPath.iterator(); p... | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
} for (Iterator pathIter = loadPath.iterator(); pathIter.hasNext();) { String entry = pathIter.next().toString(); if (entry.startsWith("jar:")) { JarFile current = (JarFile)jarFiles.get(entry); if(null == current) { try { current = new JarFile(entry.substring(4)); jarFiles.put(entry,current); } catch (FileNotFoundExce... | if (current.getJarEntry(name) != null) { try { return new LoadServiceResource(new URL(entry + name), entry + name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromException(e); | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
if (current.getJarEntry(name) != null) { try { return new LoadServiceResource(new URL(entry + name), entry + name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromException(e); } } } | } } | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
try { | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java | |
URL loc = classLoader.getResource(entry.replace('\\', '/') + "/" + xname); if (isRequireable(loc)) { return new LoadServiceResource(loc, loc.getPath()); } | } catch (AccessControlException accessEx) { } catch (IllegalArgumentException illArgEx) { | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
URL loc = classLoader.getResource(xname); | URL loc = classLoader.getResource(entry.replace('\\', '/') + "/" + xname); | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
return isRequireable(loc) ? new LoadServiceResource(loc, loc.getPath()) : null; | if (isRequireable(loc)) { return new LoadServiceResource(loc, loc.getPath()); } } URL loc = classLoader.getResource(xname); return isRequireable(loc) ? new LoadServiceResource(loc, loc.getPath()) : null; | private LoadServiceResource findFile(String name) { // try { if (name.startsWith("jar:")) { try { return new LoadServiceResource(new URL(name), name); } catch (MalformedURLException e) { throw runtime.newIOErrorFromExceptio... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } | public void init(List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String) iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java | |
String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { char sep = '/'; String rubyDir = jrubyHome + sep + "lib" + sep + "ruby" + sep; addPath(rubyDir + "site_ruby" + sep + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + sep + Constants.RUBY_MAJOR_VERSION + sep + "java"); addPath(r... | try { if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { char sep = '/'; String rubyDir = jrubyHome + sep + "lib" + sep + "ruby" + sep; addPath(rubyDir + "si... | public void init(List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String) iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
loc.openConnection(); return true; | loc.openConnection(); return true; | private boolean isRequireable(URL loc) { if (loc != null) { if (loc.getProtocol().equals("file") && new java.io.File(loc.getFile()).isDirectory()) { return false; } try { loc.openConnection(); return true; } catch (Exc... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d38821551a58969cd2593b463d93df5f32bf3c14/LoadService.java/clean/src/org/jruby/runtime/load/LoadService.java |
NormalizedFile file = new NormalizedFile(path.getValue()); | NormalizedFile file = new NormalizedFile(path.toString()); | private static NormalizedFile newFile(RubyString path) { NormalizedFile file = new NormalizedFile(path.getValue()); if (!file.isAbsolute()) { file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.getValue()); } try { file = (NormalizedFile)file.getCanonicalFile(... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyFileTest.java/buggy/src/org/jruby/RubyFileTest.java |
file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.getValue()); | file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.toString()); | private static NormalizedFile newFile(RubyString path) { NormalizedFile file = new NormalizedFile(path.getValue()); if (!file.isAbsolute()) { file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.getValue()); } try { file = (NormalizedFile)file.getCanonicalFile(... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyFileTest.java/buggy/src/org/jruby/RubyFileTest.java |
throw recv.getRuntime().newErrnoENOENTError("No such file: " + filename.getValue()); | throw recv.getRuntime().newErrnoENOENTError("No such file: " + filename); | public static IRubyObject size(IRubyObject recv, RubyString filename) { NormalizedFile file = newFile(filename); if (!file.exists()) { throw recv.getRuntime().newErrnoENOENTError("No such file: " + filename.getValue()); } return filename.getRuntime().newFixnum(file.len... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyFileTest.java/buggy/src/org/jruby/RubyFileTest.java |
String version = SpringVersion.getVersion(); | String version = "2.0"; try { Class spring20Clazz = Class.forName("org.springframework.core.AttributeAccessorSupport"); version = "2.0"; } catch(ClassNotFoundException e) { version = "1.2.8"; } | public static XmlBeanDefinitionReader createBeanDefinitionReader( SpringApplicationContext applicationContext, BeanDefinitionRegistry registry, List xmlPreprocessors) { String version = SpringVersion.getVersion(); String className = "org.apache.... | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/11df53b59b983bed2ad4569b2462495157cef4ff/XBeanHelper.java/buggy/xbean-spring-common/src/main/java/org/apache/xbean/spring/context/impl/XBeanHelper.java |
runtime.defineGlobalConstant("ENV", RubyHash.newHash(runtime, envs, null)); | runtime.defineGlobalConstant("ENV", RubyHash.newHash(runtime, envs, runtime.getNil())); | public static void createGlobals(IRuby runtime) { // Version information: IRubyObject version = runtime.newString(Constants.RUBY_VERSION).freeze(); IRubyObject release = runtime.newString(Constants.COMPILE_DATE).freeze(); IRubyObject platform = runtime.newString(Constants.PLATFORM).freez... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ebc655285fa55c939b42b33be335d9f4b2040047/RubyGlobal.java/buggy/src/org/jruby/RubyGlobal.java |
model.setCaseSensitive(source.isSelected()); | finder.setCaseSensitive(source.isSelected()); | private void initComponents() { createMenuBar(); createLeftMenuBar(); caseSensitive = new JCheckBox("Match case"); caseSensitive.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent e) { JCheckBox source = (JCheckBox) e.getSource(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8ab0ebced6045585fe427d0aa4302d96454e7266/FinderUI.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/finder/FinderUI.java |
model.setCaseSensitive(source.isSelected()); | finder.setCaseSensitive(source.isSelected()); | public void stateChanged(ChangeEvent e) { JCheckBox source = (JCheckBox) e.getSource(); model.setCaseSensitive(source.isSelected()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8ab0ebced6045585fe427d0aa4302d96454e7266/FinderUI.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/finder/FinderUI.java |
found = false; | void setCaseSensitive(boolean b) { if (b == model.isCaseSensitive()) return; model.setCaseSensitive(b); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8ab0ebced6045585fe427d0aa4302d96454e7266/Finder.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/finder/Finder.java | |
String baseDir = "."; Vector filesToMerge = new Vector(); | File baseDir = null; List filesToMerge = new ArrayList(); | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/1b806796294e95c04fa1265325392bcf191c20fb/Main.java/buggy/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
baseDir = args[++i]; | baseDir = new File(args[++i]); | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/1b806796294e95c04fa1265325392bcf191c20fb/Main.java/buggy/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
filesToMerge.add(baseDir + File.separator + args[i]); | filesToMerge.add( new File(baseDir, args[i])); | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/1b806796294e95c04fa1265325392bcf191c20fb/Main.java/buggy/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
if (filesToMerge.size() == 0) | if (filesToMerge.isEmpty()) | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/1b806796294e95c04fa1265325392bcf191c20fb/Main.java/buggy/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
String newDataFileName = (String)iter.next(); File newDataFile = new File(newDataFileName); | File newDataFile = (File)iter.next(); | public Main(String[] args) { File dataFile = CoverageDataFileHandler.getDefaultDataFile(); String baseDir = "."; Vector filesToMerge = new Vector(); // Go through all the parameters for (int i = 0; i < args.length; i++) { if (args[i].equals("--datafile")) dataFile = new File(args[++i]); else if (args[i].e... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/1b806796294e95c04fa1265325392bcf191c20fb/Main.java/buggy/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
outBuffer = ByteBuffer.allocate(BLOCK_SIZE); | public IOHandlerNio(IRuby runtime, Channel channel) throws IOException { super(runtime); String mode = ""; this.channel = channel; if (channel instanceof ReadableByteChannel) { mode += "r"; isOpen = true; } if (channel instanceof WritableByteChannel) {... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a6049d13f9eab0fce512fac5890ac20bf9ba9a27/IOHandlerNio.java/buggy/src/org/jruby/util/IOHandlerNio.java | |
if (bufferedIO) { /* flush output buffer before close */ if (outBuffer.position() > 0) { outBuffer.flip(); flushOutBuffer(); } } | /* flush output buffer before close */ if (outBuffer.position() > 0) { outBuffer.flip(); flushOutBuffer(); } | public void close() throws IOException { if (bufferedIO) { /* flush output buffer before close */ if (outBuffer.position() > 0) { outBuffer.flip(); flushOutBuffer(); } } channel.close(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a6049d13f9eab0fce512fac5890ac20bf9ba9a27/IOHandlerNio.java/buggy/src/org/jruby/util/IOHandlerNio.java |
setupBufferedIO(); | public void putc(int c) throws IOException, BadDescriptorException { checkWritable(); setupBufferedIO(); if (!outBuffer.hasRemaining()) { outBuffer.flip(); flushOutBuffer(); } outBuffer.put((byte) (c & 0xff)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a6049d13f9eab0fce512fac5890ac20bf9ba9a27/IOHandlerNio.java/buggy/src/org/jruby/util/IOHandlerNio.java | |
outBuffer = ByteBuffer.allocate(BLOCK_SIZE); | private void setupBufferedIO() { if (bufferedIO) { return; } outBuffer = ByteBuffer.allocate(BLOCK_SIZE); inBuffer = ByteBuffer.allocate(BLOCK_SIZE); flushInBuffer(); bufferedIO = true; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a6049d13f9eab0fce512fac5890ac20bf9ba9a27/IOHandlerNio.java/buggy/src/org/jruby/util/IOHandlerNio.java | |
checkBuffered(); | outBuffer.flip(); flushOutBuffer(); | public int syswrite(String string) throws BadDescriptorException, IOException { checkWritable(); checkBuffered(); ByteBuffer buffer = ByteBuffer.wrap(RubyString.stringToBytes(string)); while (buffer.hasRemaining()) { if (((WritableByteChannel) channel).write(buffer) < 0) { /... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a6049d13f9eab0fce512fac5890ac20bf9ba9a27/IOHandlerNio.java/buggy/src/org/jruby/util/IOHandlerNio.java |
setupBufferedIO(); | public void ungetc(int c) { ungotc = c; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a6049d13f9eab0fce512fac5890ac20bf9ba9a27/IOHandlerNio.java/buggy/src/org/jruby/util/IOHandlerNio.java | |
setupBufferedIO(); | public int write(String string) throws IOException, BadDescriptorException { setupBufferedIO(); checkWritable(); ByteBuffer buffer = ByteBuffer.wrap(RubyString.stringToBytes(string)); byte[] trigger; IRubyObject dollar_backslash = getRuntime().getGlobalVariables().get("$\\"); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a6049d13f9eab0fce512fac5890ac20bf9ba9a27/IOHandlerNio.java/buggy/src/org/jruby/util/IOHandlerNio.java | |
public EnumType(Properties attrs){super(attrs);} | public EnumType(Properties attrs){ super(attrs); Properties props = new Properties(); props.setProperty("name","value"); props.setProperty("type","string"); RequiredField value = new RequiredField(props); getProperties().add(value); } | public EnumType(Properties attrs){super(attrs);} | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8910db2ba599cde3137140fc7a57bdfc3361117f/SemanticType.java/clean/components/dsl/src/ome/dsl/SemanticType.java |
new DOInfo(details, model)); | new DOInfo(details, model, true)); | private JComponent buildCenterComponent() { switch (model.getEditorType()) { case Editor.CREATE_EDITOR: return doBasic; case Editor.PROPERTIES_EDITOR: IconManager im = IconManager.getInstance(); JTabbedPane tabs = new JTabbedPane(JTabbedPa... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f24af159634bdc4228febad328548fbedecdb1d/EditorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/editors/EditorUI.java |
new DOInfo(details, null)); | new DOInfo(details, model, false)); | private JComponent buildCenterComponent() { switch (model.getEditorType()) { case Editor.CREATE_EDITOR: return doBasic; case Editor.PROPERTIES_EDITOR: IconManager im = IconManager.getInstance(); JTabbedPane tabs = new JTabbedPane(JTabbedPa... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f24af159634bdc4228febad328548fbedecdb1d/EditorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/editors/EditorUI.java |
lensMenu = LensMenu.getMenu(lensComponent); | lensMenu = new LensMenu(lensComponent); | ZoomWindowUI(JFrame parent, LensComponent lensComponent) { super(parent); this.lensComponent = lensComponent; setTitle("Zoom Window"); setSize(300,300); setLocation(900,200); setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE); addWindowListener( new WindowAdapter() { public void windowClosing( WindowEvent... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/29b0b8d77292efe37e6130bac1e4416901230654/ZoomWindowUI.java/buggy/SRC/org/openmicroscopy/shoola/util/ui/lens/ZoomWindowUI.java |
fail(); | public void test_multi_txs() throws Exception { ReadWriteLock rwl = null; fail(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/59b11883b95c926d6706e6d30b4cdb898088683c/RenderingEngineTest.java/buggy/components/server/test/ome/server/itests/RenderingEngineTest.java | |
Criteria c = session.createCriteria((Class) value(CLASS)); | Criteria c = session.createCriteria(Image.class); | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria((Class) value(CLASS)); c.setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY); c.add(Restrictions.in("id",(Collection) value(IDS))); Hierarchy.fetchChildren(c,(C... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b0d9b08448464cb80e12bda271a852daf0e5bd6a/PojosGetImagesQueryDefinition.java/clean/components/server/src/ome/services/query/PojosGetImagesQueryDefinition.java |
c.add(Restrictions.in("id",(Collection) value(IDS))); Hierarchy.fetchChildren(c,(Class) value(CLASS),Integer.MAX_VALUE); | Criteria[] hy = Hierarchy.fetchParents(c,(Class) value(CLASS),Integer.MAX_VALUE); hy[hy.length-1].add(Restrictions.in("id",(Collection) value(IDS))); | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria((Class) value(CLASS)); c.setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY); c.add(Restrictions.in("id",(Collection) value(IDS))); Hierarchy.fetchChildren(c,(C... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b0d9b08448464cb80e12bda271a852daf0e5bd6a/PojosGetImagesQueryDefinition.java/clean/components/server/src/ome/services/query/PojosGetImagesQueryDefinition.java |
result.callMethod(recv.getRuntime().getCurrentContext(),"initialize",args); | result.callInit(args); | public static IRubyObject newInstance(IRubyObject recv, IRubyObject[] args) { Cipher result = new Cipher(recv.getRuntime(), (RubyClass)recv); result.callMethod(recv.getRuntime().getCurrentContext(),"initialize",args); return result; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/3514dc67abeb8cd25e5ebb1dc300ffbba6dcf5a4/Cipher.java/clean/src/org/jruby/ext/openssl/Cipher.java |
magFactor); | magFactor, abstraction.getImageWidth(), abstraction.getImageHeight()); | public void showInspector() { if (imageInspector == null) imageInspector = new ImageInspector(this, presentation.getCanvas(), magFactor); presentation.getCanvas().getManager().setClick(true); UIUtilities.centerAndShow(imageInspector); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8846f7da5fbaf4d3fb83aa43b5616bcd13483654/ViewerCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/viewer/ViewerCtrl.java |
scope.setValues(args, false); | scope.setValues(args, expectedArgsCount, false); | private void prepareArguments(ThreadContext context, IRuby runtime, Scope scope, IRubyObject receiver, IRubyObject[] args) { int expectedArgsCount = argsNode.getArgsCount(); int restArg = argsNode.getRestArg(); boolean hasOptArgs = argsNode.getOptArgs() != null; // FIXME: This seems redu... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dc464e41f4cc61e7250cbd6b2013e49cf87db7f2/DefaultMethod.java/buggy/src/org/jruby/internal/runtime/methods/DefaultMethod.java |
else { | else | private String handleError( Variable variable, Context context, Exception problem ) { String strError; ArrayList arlErrors = null; PropertyException propEx = null; if (problem instanceof PropertyException) propEx = (PropertyException)problem; else { ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/e89ac338b1d6e0befa14e4104331a063c633f3d6/DebugEvaluationExceptionHandler.java/clean/webmacro/src/org/webmacro/engine/DebugEvaluationExceptionHandler.java |
propEx.setContextLocation(context.getCurrentLocation()); } | propEx.setContextLocation(context.getCurrentLocation()); | private String handleError( Variable variable, Context context, Exception problem ) { String strError; ArrayList arlErrors = null; PropertyException propEx = null; if (problem instanceof PropertyException) propEx = (PropertyException)problem; else { ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/e89ac338b1d6e0befa14e4104331a063c633f3d6/DebugEvaluationExceptionHandler.java/clean/webmacro/src/org/webmacro/engine/DebugEvaluationExceptionHandler.java |
public List getList() { | public ArrayList getList() { | public List getList() { return list; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RubyArray.java/clean/org/jruby/RubyArray.java |
assertNotNull("Root has to be define.",root); | assertNotNull("Root has to be defined.",root); | public void testExperimenterShouldAlwaysExist() throws Exception { Experimenter root = (Experimenter) iQuery.findByQuery(Experimenter.class.getName(), new Parameters().addId(0L)); assertNotNull("Root has to be define.",root); // FIXME assertNotNull(... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/59b11883b95c926d6706e6d30b4cdb898088683c/InvariantsTest.java/clean/components/server/test/ome/server/itests/query/InvariantsTest.java |
if (headingItem != null) headingItem.setEnabled(enabled); | if (headingItem != null && !headingItem.isDisposed()) headingItem.setEnabled(enabled); | public void setEnabled(boolean enabled) { if (this.enabled != enabled) { this.enabled = enabled; if (headingItem != null) headingItem.setEnabled(enabled); } } | 57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/102d4072e61256869ff46cb3e5a08b2ccd94465d/DisableableMenuManager.java/buggy/trunk/src/de/berlios/koalanotes/display/menus/DisableableMenuManager.java |
if (headingItem != null && headingItem.isEnabled() != enabled) { | if (headingItem != null && !headingItem.isDisposed() && headingItem.isEnabled() != enabled) { | public void update() { super.update(); if (headingItem != null && headingItem.isEnabled() != enabled) { headingItem.setEnabled(enabled); } } | 57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/102d4072e61256869ff46cb3e5a08b2ccd94465d/DisableableMenuManager.java/buggy/trunk/src/de/berlios/koalanotes/display/menus/DisableableMenuManager.java |
if (headingItem != null && headingItem.isEnabled() != enabled) { | if (headingItem != null && !headingItem.isDisposed() && headingItem.isEnabled() != enabled) { | public void updateAll(boolean arg0) { super.updateAll(arg0); if (headingItem != null && headingItem.isEnabled() != enabled) { headingItem.setEnabled(enabled); } } | 57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/102d4072e61256869ff46cb3e5a08b2ccd94465d/DisableableMenuManager.java/buggy/trunk/src/de/berlios/koalanotes/display/menus/DisableableMenuManager.java |
register(result); | private IRubyObject defaultObjectUnmarshal() throws IOException { RubySymbol className = (RubySymbol) unmarshalObject(); // ... FIXME: handle if class doesn't exist ... RubyClass type = (RubyClass) runtime.getClasses().getClassFromPath(className.toId()); Asserts.assertNotNull(type, "type... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9db4d278a734c4fdfd9a83ed95575a45577f1e1b/UnmarshalStream.java/buggy/org/jruby/runtime/marshal/UnmarshalStream.java | |
cache.register(result); | public IRubyObject unmarshalObject() throws IOException { int type = readUnsignedByte(); IRubyObject result; if (type == '@') { result = cache.linkedByIndex(unmarshalInt()); } else if (type == ';') { result = cache.symbolByIndex(unmarshalInt()); } else { ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9db4d278a734c4fdfd9a83ed95575a45577f1e1b/UnmarshalStream.java/buggy/org/jruby/runtime/marshal/UnmarshalStream.java | |
return classInstance.callMethod( | IRubyObject result = classInstance.callMethod( | private IRubyObject userUnmarshal() throws IOException { String className = ((RubySymbol) unmarshalObject()).toId(); String marshaled = unmarshalString(); RubyModule classInstance = runtime.getRubyModule(className); return classInstance.callMethod( "_load", RubyStri... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9db4d278a734c4fdfd9a83ed95575a45577f1e1b/UnmarshalStream.java/buggy/org/jruby/runtime/marshal/UnmarshalStream.java |
register(result); return result; | private IRubyObject userUnmarshal() throws IOException { String className = ((RubySymbol) unmarshalObject()).toId(); String marshaled = unmarshalString(); RubyModule classInstance = runtime.getRubyModule(className); return classInstance.callMethod( "_load", RubyStri... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9db4d278a734c4fdfd9a83ed95575a45577f1e1b/UnmarshalStream.java/buggy/org/jruby/runtime/marshal/UnmarshalStream.java | |
return RubyRegexp.newRegexp(runtime, sb.toString(), iVisited.getOptions(), null); | String lang = null; int opts = iVisited.getOptions(); if((opts & 16) != 0) { lang = "n"; } else if((opts & 48) != 0) { lang = "s"; } else if((opts & 64) != 0) { lang = "u"; } return RubyRegexp.newRegexp(runtime, sb.toString(), iVisited.getOptions(), lang); | private static IRubyObject evalInternal(ThreadContext context, Node node, IRubyObject self) { IRuby runtime = context.getRuntime(); bigloop: do { if (node == null) return runtime.getNil(); switch (node.nodeId) { case NodeTypes.ALIASNODE: { AliasNode ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a99c8643e2996a04338dcb2ea5ad169c29e5f798/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java |
return RubyRegexp.newRegexp(runtime, iVisited.getPattern(), null); | String lang = null; int opts = iVisited.getOptions(); if((opts & 16) != 0) { lang = "n"; } else if((opts & 48) != 0) { lang = "s"; } else if((opts & 64) != 0) { lang = "u"; } return RubyRegexp.newRegexp(runtime, iVisited.getPattern(), lang); | private static IRubyObject evalInternal(ThreadContext context, Node node, IRubyObject self) { IRuby runtime = context.getRuntime(); bigloop: do { if (node == null) return runtime.getNil(); switch (node.nodeId) { case NodeTypes.ALIASNODE: { AliasNode ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a99c8643e2996a04338dcb2ea5ad169c29e5f798/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java |
public DisplayOption(Integer attributeId, Boolean redOn, Integer ZStart, Boolean blueOn, String colorMap, Integer ZStop, Float zoom, Integer TStop, Integer TStart, Boolean greenOn, Boolean displayRgb, org.openmicroscopy.omero.model.Image image, org.openmicroscopy.omero.model.ImagePixel imagePixel, org.openmicroscopy.om... | public DisplayOption() { | public DisplayOption(Integer attributeId, Boolean redOn, Integer ZStart, Boolean blueOn, String colorMap, Integer ZStop, Float zoom, Integer TStop, Integer TStart, Boolean greenOn, Boolean displayRgb, org.openmicroscopy.omero.model.Image image, org.openmicroscopy.omero.model.ImagePixel imagePixel, org.openmicroscop... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DisplayOption.java/buggy/components/common/src/org/openmicroscopy/omero/model/DisplayOption.java |
public org.openmicroscopy.omero.model.Image getImage() { | public Image getImage() { | public org.openmicroscopy.omero.model.Image getImage() { return this.image; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DisplayOption.java/buggy/components/common/src/org/openmicroscopy/omero/model/DisplayOption.java |
public org.openmicroscopy.omero.model.ImagePixel getImagePixel() { | public ImagePixel getImagePixel() { | public org.openmicroscopy.omero.model.ImagePixel getImagePixel() { return this.imagePixel; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DisplayOption.java/buggy/components/common/src/org/openmicroscopy/omero/model/DisplayOption.java |
public org.openmicroscopy.omero.model.ModuleExecution getModuleExecution() { | public ModuleExecution getModuleExecution() { | public org.openmicroscopy.omero.model.ModuleExecution getModuleExecution() { return this.moduleExecution; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DisplayOption.java/buggy/components/common/src/org/openmicroscopy/omero/model/DisplayOption.java |
public void setImage(org.openmicroscopy.omero.model.Image image) { | public void setImage(Image image) { | public void setImage(org.openmicroscopy.omero.model.Image image) { this.image = image; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DisplayOption.java/buggy/components/common/src/org/openmicroscopy/omero/model/DisplayOption.java |
public void setImagePixel(org.openmicroscopy.omero.model.ImagePixel imagePixel) { | public void setImagePixel(ImagePixel imagePixel) { | public void setImagePixel(org.openmicroscopy.omero.model.ImagePixel imagePixel) { this.imagePixel = imagePixel; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DisplayOption.java/buggy/components/common/src/org/openmicroscopy/omero/model/DisplayOption.java |
public void setModuleExecution(org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { | public void setModuleExecution(ModuleExecution moduleExecution) { | public void setModuleExecution(org.openmicroscopy.omero.model.ModuleExecution moduleExecution) { this.moduleExecution = moduleExecution; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/DisplayOption.java/buggy/components/common/src/org/openmicroscopy/omero/model/DisplayOption.java |
types.add(type); | types.put(type.getId(),type); | private void handleExit(String element){ if (Property.FIELDS.contains(element)){ if (null==property){ throw new IllegalStateException("Exiting non-extant property!\n"+"Element:"+element+"\nType:"+type+"\nProperty:"+property); } if (null==type){ throw new IllegalStateException("Inside of non-extant... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/SaxReader.java/clean/components/dsl/src/ome/dsl/SaxReader.java |
public Set process(){ return types; | public Set<SemanticType> process(){ for (String id : types.keySet()) { SemanticType t = types.get(id); for (Property p : t.getProperties()) { String rev = p.getType(); String inv = p.getInverse(); if ( inv != null ) { if (types.containsKey(rev)) { SemanticType reverse = types.get(rev); for (Property inverse : reverse.g... | public Set process(){ return types; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/SaxReader.java/clean/components/dsl/src/ome/dsl/SaxReader.java |
public SaxReader(String filename){ xmlFile = this.getClass().getClassLoader().getResource(filename); init(); | public SaxReader(File file){ this(file, new DSLHandler()); | public SaxReader(String filename){ xmlFile = this.getClass().getClassLoader().getResource(filename); init(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/SaxReader.java/clean/components/dsl/src/ome/dsl/SaxReader.java |
public Set parse(){ | public void parse(){ | public Set parse(){ try { parser.parse(xmlFile.getPath(), handler); } catch (Exception e) { throw new RuntimeException( "Error parsing "+xmlFile+" :\n"+e.getMessage(),e); } return handler.process(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/SaxReader.java/clean/components/dsl/src/ome/dsl/SaxReader.java |
return handler.process(); | public Set parse(){ try { parser.parse(xmlFile.getPath(), handler); } catch (Exception e) { throw new RuntimeException( "Error parsing "+xmlFile+" :\n"+e.getMessage(),e); } return handler.process(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/SaxReader.java/clean/components/dsl/src/ome/dsl/SaxReader.java | |
public Set getProperties() { | public Set<Property> getProperties() { | public Set getProperties() { return properties; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/SemanticType.java/buggy/components/dsl/src/ome/dsl/SemanticType.java |
public abstract HttpMethodBase marshal() | public abstract HttpMethod marshal() | public abstract HttpMethodBase marshal() throws ImageServiceException; | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c0ee67611abddaf7c5a898ad8033ca4845e9d8fe/Request.java/clean/SRC/org/openmicroscopy/shoola/omeis/proxy/Request.java |
else if (format.equals(TEXTFilter.TEXT)) writeXMLFile(); | else if (format.equals(XMLFilter.XML)) WriterText.writeTableAsXML(f, mng.getModel()); | void saveROIResult(String format, String name, String msg) { UserNotifier un = control.getRegistry().getUserNotifier(); if (mng.getROIStats() == null) un.notifyError("Save ROI results", msg); else { name +="."+format; //Add extension File f = new File(name);... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f84715d97fb9bad35cd75d5c742a1473fe1f109/ROIStatsSaverMng.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/util/ROIStatsSaverMng.java |
String[][] getROIStats() { return control.getROIStats(); } | String[][] getROIStats() { return control.getROIStats(); } | String[][] getROIStats() { return control.getROIStats(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f84715d97fb9bad35cd75d5c742a1473fe1f109/ROIStatsMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/roi/util/ROIStatsMng.java |
final JSlider slider = new JSlider(new DefaultBoundedRangeModel(100,10,10,200)); slider.setPaintLabels(true); slider.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent arg0) { int value = slider.getValue(); if(slider.getValueIsAdjusting()) { embeddedView.setZoomToScale(false); } embeddedView.... | public BrowserInternalFrame(BrowserController theController) { setSize(600,600); setDefaultCloseOperation(JInternalFrame.DISPOSE_ON_CLOSE); if(theController != null) { this.controller = theController; String title = controller.getName(); setTit... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/931190c640a4d36141bc5769628dc3f10cf66641/BrowserInternalFrame.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserInternalFrame.java | |
} else { state.setResult(state.runtime.getNil()); | public void execute(EvaluationState state, InstructionContext ctx) { DefinedNode iVisited = (DefinedNode)ctx; String def = new DefinedVisitor(state).getDefinition(iVisited.getExpressionNode()); if (def != null) { state.setResult(state.runtime.newString(def)); } ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/079fa8abc94ff21e709074b13a680c91959242e6/EvaluateVisitor.java/buggy/src/org/jruby/evaluator/EvaluateVisitor.java | |
ruby.defineGlobalFunction("iterator?", CallbackFactory.getSingletonMethod(RubyGlobal.class, "block_given")); | public static void createGlobals(Ruby ruby) { StringSetter stringSetter = new StringSetter(); LastlineAccessor lastlineAccessor = new LastlineAccessor(); SafeAccessor safeAccessor = new SafeAccessor(); ruby.defineHookedVariable("$/", RubyString.newString(ruby, "\n"), null, stringSetter);... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/2f13ba47385b7584839c7f6f6f1abfee251cbe53/RubyGlobal.java/buggy/org/jruby/RubyGlobal.java | |
for( int i=0; i<annotations.size(); i++ ) f.g(annotations.get(i)).nl(); | for (JAnnotationUse annotation : annotations) f.g(annotation).nl(); | public void declare(JFormatter f) { if (jdoc != null) f.nl().g(jdoc); if (annotations != null){ for( int i=0; i<annotations.size(); i++ ) f.g(annotations.get(i)).nl(); } f.g(mods).p(classType.declarationToken).id(name).d(generifiable); if (supe... | 53231 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53231/ee6618a6d0c176aa38bdc3eefc87df9f60c84554/JDefinedClass.java/buggy/trunk/codemodel/src/com/sun/codemodel/JDefinedClass.java |
JEnumConstant ec = new JEnumConstant(this, name); enumConstantsByName.put(name, ec); return ec; | JEnumConstant ec = enumConstantsByName.get(name); if (null == ec) { ec = new JEnumConstant(this, name); enumConstantsByName.put(name, ec); } return ec; | public JEnumConstant enumConstant(String name){ JEnumConstant ec = new JEnumConstant(this, name); enumConstantsByName.put(name, ec); return ec; } | 53231 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53231/ee6618a6d0c176aa38bdc3eefc87df9f60c84554/JDefinedClass.java/buggy/trunk/codemodel/src/com/sun/codemodel/JDefinedClass.java |
outer : | public JMethod getMethod(String name, JType[] argTypes) { outer : for (JMethod m : methods) { if (!m.name().equals(name)) continue; if (m.hasSignature(argTypes)) return m; } return null; } | 53231 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53231/ee6618a6d0c176aa38bdc3eefc87df9f60c84554/JDefinedClass.java/buggy/trunk/codemodel/src/com/sun/codemodel/JDefinedClass.java | |
Map kernelMethods = getRuntime().getClasses().getKernelModule().getMethods(); | private RubyArray instance_methods(IRubyObject[] args, final Visibility visibility) { boolean includeSuper = args.length > 0 ? args[0].isTrue() : true; RubyArray ary = RubyArray.newArray(getRuntime()); Map kernelMethods = getRuntime().getClasses().getKernelModule().getMethods(); for (Rub... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/111ffceb6641644db641863784ba47cc459fef17/RubyModule.java/clean/src/org/jruby/RubyModule.java | |
if (p.getMethods() == kernelMethods) { continue; } | private RubyArray instance_methods(IRubyObject[] args, final Visibility visibility) { boolean includeSuper = args.length > 0 ? args[0].isTrue() : true; RubyArray ary = RubyArray.newArray(getRuntime()); Map kernelMethods = getRuntime().getClasses().getKernelModule().getMethods(); for (Rub... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/111ffceb6641644db641863784ba47cc459fef17/RubyModule.java/clean/src/org/jruby/RubyModule.java | |
if (method.getVisibility().is(visibility)) { | if (method.getVisibility().is(visibility) && method.isUndefined() == false) { | private RubyArray instance_methods(IRubyObject[] args, final Visibility visibility) { boolean includeSuper = args.length > 0 ? args[0].isTrue() : true; RubyArray ary = RubyArray.newArray(getRuntime()); Map kernelMethods = getRuntime().getClasses().getKernelModule().getMethods(); for (Rub... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/111ffceb6641644db641863784ba47cc459fef17/RubyModule.java/clean/src/org/jruby/RubyModule.java |
return getRuntime().getNil(); | throw new NameError(getRuntime(), "undefined method `" + name + "' for class `" + this.getName() + "'"); | public IRubyObject newMethod(IRubyObject receiver, String name, boolean bound) { CacheEntry ent = getMethodBodyCached(name); if (! ent.isDefined()) { // printUndef(); return getRuntime().getNil(); } while (ent.getMethod() instanceof EvaluateMethod && ((Ev... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/111ffceb6641644db641863784ba47cc459fef17/RubyModule.java/clean/src/org/jruby/RubyModule.java |
inputStreamClosed = true; | private final void FillBuff() throws java.io.IOException { // Buffer fill logic: // If there is at least 2K left in this buffer, just read some more // Otherwise, if we're processing a token and it either // (a) starts in the other buffer (meaning it's filled both part of // the other buffer and ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/fbf02da47b28287a2fb58ba11f732d631e0446f7/BackupCharStream.java/clean/webmacro/src/org/webmacro/parser/BackupCharStream.java | |
inputStreamClosed = false; | public void ReInit(java.io.Reader dstream, int startline, int startcolumn, int buffersize) { inputStream = dstream; line = startline; column = startcolumn - 1; if (bufA == null || bufA.size != buffersize) bufA = new Buffer(buffersize); if (bufB == null || bufB.size != buffersi... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/fbf02da47b28287a2fb58ba11f732d631e0446f7/BackupCharStream.java/clean/webmacro/src/org/webmacro/parser/BackupCharStream.java | |
int addlChars = amount - 1 - curBuf.curPos; | int addlChars = amount - (inputStreamClosed? 0 : 1) - curBuf.curPos; | public final void backup(int amount) { backupChars += amount; if (curBuf.curPos - amount < 0) { int addlChars = amount - 1 - curBuf.curPos; curBuf.curPos = 0; swapBuf(); curBuf.curPos = curBuf.dataLen - addlChars - 1; } else { curBuf.curPos -= amount; } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/fbf02da47b28287a2fb58ba11f732d631e0446f7/BackupCharStream.java/clean/webmacro/src/org/webmacro/parser/BackupCharStream.java |
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