rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k | meta stringlengths 141 403 |
|---|---|---|---|
return AdapterUtils.go((CategoryGroup) result, new HashMap()); | return AdapterUtils.go((CategoryGroup) result, newCache()); | static public DataObject adaptLoadedCGCIHierarchy(Class rootNodeType, Object result) { if (rootNodeType.equals(CategoryGroup.class)){ return AdapterUtils.go((CategoryGroup) result, new HashMap()); } else if (rootNodeType.equals(Category.class)){ return AdapterUtils.go((Category) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/AdapterUtils.java/clean/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/AdapterUtils.java |
return AdapterUtils.go((Category) result, new HashMap()); | return AdapterUtils.go((Category) result, newCache()); | static public DataObject adaptLoadedCGCIHierarchy(Class rootNodeType, Object result) { if (rootNodeType.equals(CategoryGroup.class)){ return AdapterUtils.go((CategoryGroup) result, new HashMap()); } else if (rootNodeType.equals(Category.class)){ return AdapterUtils.go((Category) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/AdapterUtils.java/clean/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/AdapterUtils.java |
return AdapterUtils.go((Project) result, new HashMap()); | return AdapterUtils.go((Project) result, newCache()); | static public DataObject adaptLoadedPDIHierarchy(Class rootNodeType, Object result) { if (rootNodeType.equals(Project.class)){ return AdapterUtils.go((Project) result, new HashMap()); } else if (rootNodeType.equals(Dataset.class)){ return AdapterUtils.go((Dataset) result, new Has... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/AdapterUtils.java/clean/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/AdapterUtils.java |
return AdapterUtils.go((Dataset) result, new HashMap()); | return AdapterUtils.go((Dataset) result, newCache()); | static public DataObject adaptLoadedPDIHierarchy(Class rootNodeType, Object result) { if (rootNodeType.equals(Project.class)){ return AdapterUtils.go((Project) result, new HashMap()); } else if (rootNodeType.equals(Dataset.class)){ return AdapterUtils.go((Dataset) result, new Has... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/AdapterUtils.java/clean/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/AdapterUtils.java |
if (null == p.getProjectId()) { | if (null == p.getProjectId()) { | static public ProjectData go(Project p, Map cache) { if (check(cache,p)) { return (ProjectData) from(cache, p); } ProjectData pd = new ProjectData(); to(cache, p, pd); if (null == p.getProjectId()) { if (log.isDebugEnabled())log.debug(nullId+p); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/AdapterUtils.java/clean/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/AdapterUtils.java |
m.put(init_time,new Date()); | static Map newCache() { Map m = new HashMap(); m.put(null,null); // This keeps things from getting hairy return m; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/AdapterUtils.java/clean/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/AdapterUtils.java | |
module.defineModuleFunction("select", callbackFactory.getOptSingletonMethod("select")); | public static RubyModule createKernelModule(IRuby runtime) { RubyModule module = runtime.defineModule("Kernel"); CallbackFactory callbackFactory = runtime.callbackFactory(RubyKernel.class); CallbackFactory objectCallbackFactory = runtime.callbackFactory(RubyObject.class); module.defineMo... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/RubyKernel.java/clean/src/org/jruby/RubyKernel.java | |
public NoteTreeNode(NoteTreeNode parent, DisplayedNote data) { | protected NoteTreeNode(NoteTreeNode parent, DisplayedNote data) { | public NoteTreeNode(NoteTreeNode parent, DisplayedNote data) { treeItem = new TreeItem(parent.treeItem, SWT.NONE, data.getNote().getIndex()); init(data); } | 57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/d0681c368f8b555700e4ef73b079e6a225f180f2/NoteTreeNode.java/buggy/trunk/src/de/berlios/koalanotes/display/NoteTreeNode.java |
if (isSelected() == selected) { return; } | public void setSelected(boolean selected) { List<TreeItem> selectionTemp = Arrays.asList(treeItem.getParent().getSelection()); List<TreeItem> selection = new LinkedList<TreeItem>(selectionTemp); if (selected) { selection.add(treeItem); } else { selection.remove(treeItem); } TreeItem[] newSelection = selectio... | 57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/d0681c368f8b555700e4ef73b079e6a225f180f2/NoteTreeNode.java/buggy/trunk/src/de/berlios/koalanotes/display/NoteTreeNode.java | |
super(runtime, null, superClass, runtime.getObject(), "Module", RubyModule.class); | super(runtime, null, superClass, runtime.getObject().getCRef(), "Module", RubyModule.class); | public ModuleMetaClass(IRuby runtime, RubyClass superClass) { super(runtime, null, superClass, runtime.getObject(), "Module", RubyModule.class); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a1b8fc1d456e3d5c6e01579b88773383068aa85c/ModuleMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ModuleMetaClass.java |
public RubyClass newSubClass(String name, RubyModule parent) { return new ModuleMetaClass(name, this, parent); | public RubyClass newSubClass(String name, SinglyLinkedList parentCRef) { return new ModuleMetaClass(name, this, parentCRef); | public RubyClass newSubClass(String name, RubyModule parent) { return new ModuleMetaClass(name, this, parent); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a1b8fc1d456e3d5c6e01579b88773383068aa85c/ModuleMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ModuleMetaClass.java |
if (!currentP.identical(previousP)) | Permissions tmpDetails = new Permissions(previousP); if (currentP.isSet(Flag.LOCKED)) { tmpDetails.set(Flag.LOCKED); } else { tmpDetails.unSet(Flag.LOCKED); } if (!currentP.identical(tmpDetails)) | protected boolean managedPermissions(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { // setup boolean altered = false; Permissions previousP = previousDetails == null ? null : previousDetails.getPermissions(); Permissions currentP = c... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/36bb3b3ff2057894b05b208ab4ef1b9ce950164a/BasicSecuritySystem.java/buggy/components/server/src/ome/security/basic/BasicSecuritySystem.java |
&& !source.getOwner().getId().equals( newDetails.getOwner().getId())) { | && !newDetails.getOwner().getId().equals( source.getOwner().getId())) { | public Details newTransientDetails(IObject obj) { checkReady("transientDetails"); if (obj == null) throw new ApiUsageException("Argument cannot be null."); if (hasPrivilegedToken(obj)) return obj.getDetails(); // EARLY EXIT Details source = obj.getDetails(); Details newDetails = cd.createDetails(); if (sou... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/36bb3b3ff2057894b05b208ab4ef1b9ce950164a/BasicSecuritySystem.java/buggy/components/server/src/ome/security/basic/BasicSecuritySystem.java |
"You are not authorized to set the ExperimenterID" + " for %s to %d", obj, source.getOwner() .getId())); | "You are not authorized to set the Experimenter" + " for %s to %s", obj, source.getOwner())); | public Details newTransientDetails(IObject obj) { checkReady("transientDetails"); if (obj == null) throw new ApiUsageException("Argument cannot be null."); if (hasPrivilegedToken(obj)) return obj.getDetails(); // EARLY EXIT Details source = obj.getDetails(); Details newDetails = cd.createDetails(); if (sou... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/36bb3b3ff2057894b05b208ab4ef1b9ce950164a/BasicSecuritySystem.java/buggy/components/server/src/ome/security/basic/BasicSecuritySystem.java |
"You are not authorized to set the ExperimenterGroupID" + " for %s to %d", obj, source.getGroup() .getId())); | "You are not authorized to set the ExperimenterGroup" + " for %s to %s", obj, source.getGroup())); | public Details newTransientDetails(IObject obj) { checkReady("transientDetails"); if (obj == null) throw new ApiUsageException("Argument cannot be null."); if (hasPrivilegedToken(obj)) return obj.getDetails(); // EARLY EXIT Details source = obj.getDetails(); Details newDetails = cd.createDetails(); if (sou... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/36bb3b3ff2057894b05b208ab4ef1b9ce950164a/BasicSecuritySystem.java/buggy/components/server/src/ome/security/basic/BasicSecuritySystem.java |
private JToolBar buildViewBar() { JToolBar bar = new JToolBar(); bar.setFloatable(false); bar.setRollover(true); bar.setBorder(null); JToggleButton b = new JToggleButton( controller.getAction(HiViewerControl.TREE_VIEW)); bar.add(b); b = new ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/HiViewerToolBar.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerToolBar.java | ||
Class targetType = (Class) c2c().get(current.getClass()); | Class targetType = findClass(current.getClass()); | public Object findTarget(Object current){ // IMMUTABLES if (null == current | current instanceof Integer | current instanceof String) // TODO can use findTarget then for these as well. { return current; } else // Special cases TODO put into doFindTarget if (current instanceof Date){ return new Timest... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/afec4b5da2a19f70c897c6d87552b4e998da56cb/ModelMapper.java/clean/components/common/src/ome/util/ModelMapper.java |
(Category)controller.getCategories(group).get(i); | (Category)controller.getCategories(group).get(selectedCategory); | private void buildGUI() { Container container = getContentPane(); container.setLayout(new BorderLayout(2,2)); JPanel listPanel = new JPanel(); listPanel.setLayout(new GridLayout(1,2)); JPanel leftPanel = new JPanel(); leftPanel.setLayout(new BorderLayout(... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a47b86cb03a09b865a88769c10a7d57151002bd0/CategoryUI.java/clean/SRC/org/openmicroscopy/shoola/agents/classifier/CategoryUI.java |
(Category)controller.getCategories(group).get(i); | (Category)controller.getCategories(group).get(selectedCategory); | public void valueChanged(ListSelectionEvent e) { int i = categoryList.getSelectedIndex(); CategoryGroup group = (CategoryGroup)controller.getCategoryGroups().get(selectedGroup); Category cat = (Category)controller.... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a47b86cb03a09b865a88769c10a7d57151002bd0/CategoryUI.java/clean/SRC/org/openmicroscopy/shoola/agents/classifier/CategoryUI.java |
return _allCategories; | if(_allCategories==null){ return new LinkedHashMap(); } else{ return _allCategories; } | public Map getCategories() { if (_allCategories == null) { Collection cats = CategoryUtil.getCategories(); if(cats!=null && !cats.isEmpty()){ _allCategories = new LinkedHashMap(); _allCategories.put(ArticleUtil.getBundle().getLocalizedText("All categories"), "-1"); Iterator cat = cats.iterator(); ... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/77f6af59c63a9bb06fc5f97887a10f33495a1eb0/SearchArticleBean.java/clean/src/java/com/idega/block/article/bean/SearchArticleBean.java |
if(!getSearchCategory().equals("-1")){ | if(!("-1").equals(getSearchCategory())){ | public SearchRequest getSearchRequest(String scope, Locale locale) throws SearchException { SearchRequest s = new SearchRequest(); s.addSelection(IWSlideConstants.PROPERTY_CREATION_DATE); s.addSelection(IWSlideConstants.PROPERTY_CATEGORY); s.addScope(new SearchScope(scope)); SearchExpression whereExpression = nul... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/77f6af59c63a9bb06fc5f97887a10f33495a1eb0/SearchArticleBean.java/clean/src/java/com/idega/block/article/bean/SearchArticleBean.java |
int n = Integer.parseInt(args[0]); | public static void main(String args[]) throws IOException { //@START int n = Integer.parseInt(args[0]); int i, c; String s = ""; Integer ii; // the original program used: // Hashtable ht = new Hashtable(); // John Olsson points out that Hashtable is for synchronized access // and we should use instead: HashMap ht =... | 53330 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53330/eb6c850277407b38bcaefb81155941da0f27b849/hash.java/buggy/tests/shootout/java-start/hash.java | |
FlowLayout(FlowLayout.LEFT, 0, 0)) { | FlowLayout(FlowLayout.LEFT, 0, 0)) { | private void createUI() { setLayout(new BorderLayout()); tabs = new JPanel(new FlowLayout(FlowLayout.LEFT, 0, 0)) { public Dimension getPreferredSize() { if (getParent() == null) return getPreferredSize(); // calculate the preferre... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/93be14b35e2ec723a91a9660ce4217f9947cf7b5/SparkTabbedPane.java/buggy/src/java/org/jivesoftware/spark/component/tabbedPane/SparkTabbedPane.java |
if (e.getSource() instanceof SparkTab) { SparkTab tab = (SparkTab)e.getSource(); setSelectedTab(tab); } | public void mouseClicked(MouseEvent e) { } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/93be14b35e2ec723a91a9660ce4217f9947cf7b5/SparkTabbedPane.java/buggy/src/java/org/jivesoftware/spark/component/tabbedPane/SparkTabbedPane.java | |
if(e.isPopupTrigger()){ return; } if (e.getSource() instanceof SparkTab) { SparkTab tab = (SparkTab)e.getSource(); setSelectedTab(tab); } | public void mousePressed(MouseEvent e) { if(e.isPopupTrigger()){ return; } if (e.getSource() instanceof SparkTab) { SparkTab tab = (SparkTab)e.getSource(); setSelectedTab(tab); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/93be14b35e2ec723a91a9660ce4217f9947cf7b5/SparkTabbedPane.java/buggy/src/java/org/jivesoftware/spark/component/tabbedPane/SparkTabbedPane.java | |
textLabel.setFont(defaultFont); | public void setSelected(boolean selected) { super.setSelected(selected); this.selected = selected; if (boldWhenActive && selected) { textLabel.setFont(textLabel.getFont().deriveFont(Font.BOLD)); } else { textLabel.setFont(defaultFont); } invalid... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/00fab4f4f794528a2db5b65568d6efec6e2e119d/SparkTab.java/buggy/src/java/org/jivesoftware/spark/component/tabbedPane/SparkTab.java | |
put(varName,toolType); | put(varName,tool); | WC(final Broker broker) { _broker = broker; try { String tools = (String) _broker.getValue("config","TemplateTools"); Enumeration tenum = new StringTokenizer(tools); while (tenum.hasMoreElements()) { String toolName = (String) tenum.nextElement(); try { ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/2b733b59c2820d3bfe96a20a52e269bad07b066e/WC.java/buggy/webmacro/src/org/webmacro/servlet/WC.java |
" is a " + name.getClass()); | " is a " + c + ": " + v); | final public ContextTool getTool(String name) throws InvalidContextException { try { return (ContextTool) getMacro(name); } catch (ClassCastException ce) { throw new InvalidContextException("Not a tool, " + name + " is a " + name.getClass()); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/2b733b59c2820d3bfe96a20a52e269bad07b066e/WC.java/buggy/webmacro/src/org/webmacro/servlet/WC.java |
WebContext wc = (WebContext) clone(null); | WebContext wc = (WebContext) clone(); | final public WebContext clone( final HttpServletRequest req, final HttpServletResponse resp) { try { // want: new local vars, both existing tools tables, no bean, // plus store req and resp somewhere, plus existing broker WebContext wc = (WebContext) clone(null); ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/278b4a35f5c73b37a3381dc75821bfaa4d3aa3d0/WebContext.java/buggy/webmacro/src/org/webmacro/servlet/WebContext.java |
this.myName, name, desc, ignoreRegex); | this.myName, name, desc, ignoreRegexs); | public MethodVisitor visitMethod(final int access, final String name, final String desc, final String signature, final String[] exceptions) { MethodVisitor mv = cv.visitMethod(access, name, desc, signature, exceptions); if (!instrument) return mv; return mv == null ? null : new MethodInstrumenter(classData... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/8d76b07e3d230fcd0d3b233e7ffc80df6ca3ec82/ClassInstrumenter.java/clean/cobertura/src/net/sourceforge/cobertura/instrument/ClassInstrumenter.java |
final String owner, final String myName, final String myDescriptor, final Pattern ignoreRegexp) | final String owner, final String myName, final String myDescriptor, final Collection ignoreRegexs) | public MethodInstrumenter(ClassData classData, final MethodVisitor mv, final String owner, final String myName, final String myDescriptor, final Pattern ignoreRegexp) { super(mv); this.classData = classData; this.ownerClass = owner; this.myName = myName; this.myDescriptor = myDescriptor; this.ignoreRegex = i... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/8d76b07e3d230fcd0d3b233e7ffc80df6ca3ec82/MethodInstrumenter.java/buggy/cobertura/src/net/sourceforge/cobertura/instrument/MethodInstrumenter.java |
this.ignoreRegex = ignoreRegexp; | this.ignoreRegexs = ignoreRegexs; | public MethodInstrumenter(ClassData classData, final MethodVisitor mv, final String owner, final String myName, final String myDescriptor, final Pattern ignoreRegexp) { super(mv); this.classData = classData; this.ownerClass = owner; this.myName = myName; this.myDescriptor = myDescriptor; this.ignoreRegex = i... | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/8d76b07e3d230fcd0d3b233e7ffc80df6ca3ec82/MethodInstrumenter.java/buggy/cobertura/src/net/sourceforge/cobertura/instrument/MethodInstrumenter.java |
} else { model.setState(ANNOTATIONS_READY); fireStateChange(); | public void manageAnnotationEditing(boolean b) { if (model.getState() != ClipBoard.EDIT_ANNOTATIONS) throw new IllegalStateException("This method can only be invoked " + "in the EDIT_ANNOTATIONS state."); if (b) { view.manageAnnotation(); retrieve... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3feec30057da68977528d8509d07bff5c080fb40/ClipBoardComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardComponent.java | |
initListener(); | void initialize(ClipBoardControl controller, ClipBoardModel model) { if (controller == null) throw new NullPointerException("No control."); if (model == null) throw new NullPointerException("No model."); this.model = model; this.controller = controller; initComponents(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0c7517f5d0ece413452f58f3f0a071be2ccbee2e/ClipBoardUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardUI.java | |
public void composingNotification(final String from, String packetID) { SwingUtilities.invokeLater(new Runnable() { public void run() { String bareAddress = StringUtils.parseBareAddress(from); if (bareAddress.equals(getRoomname())) { ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/d039de56513c7dd0e3c5c2762f184ca886fb4900/GroupChatRoom.java/buggy/src/java/org/jivesoftware/spark/ui/rooms/GroupChatRoom.java | ||
public void run() { String bareAddress = StringUtils.parseBareAddress(from); if (bareAddress.equals(getRoomname())) { String nickname = StringUtils.parseResource(from); String isTypingText = Res.getString("message.is.typ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/d039de56513c7dd0e3c5c2762f184ca886fb4900/GroupChatRoom.java/buggy/src/java/org/jivesoftware/spark/ui/rooms/GroupChatRoom.java | ||
public void setSendAndReceiveTypingNotifications(boolean sendAndReceiveTypingNotifications) { sendNotifications = sendAndReceiveTypingNotifications; if (sendAndReceiveTypingNotifications) { SparkManager.getMessageEventManager().addMessageEventNotificationListener(messageManager); ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/d039de56513c7dd0e3c5c2762f184ca886fb4900/GroupChatRoom.java/buggy/src/java/org/jivesoftware/spark/ui/rooms/GroupChatRoom.java | ||
private void setupListeners() { chat.addParticipantStatusListener(new DefaultParticipantStatusListener() { public void kicked(String participant) { String nickname = StringUtils.parseResource(participant); insertText(Res.getString("message.user.kicked.from.room", nick... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/d039de56513c7dd0e3c5c2762f184ca886fb4900/GroupChatRoom.java/buggy/src/java/org/jivesoftware/spark/ui/rooms/GroupChatRoom.java | ||
public void addLog(String action, Class klass, Long id) { | public void addLog(String action, Class klass, Long id) { | public void addLog(String action, Class klass, Long id) { Assert.notNull(action); Assert.notNull(klass); Assert.notNull(id); if (Event.class.isAssignableFrom(klass) || EventLog.class.isAssignableFrom(klass) || EventDiff.class.isAssignableFrom(klass)) { log.debug("Not logging creation of logging type:" + kl... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
EventLog l = new EventLog(); l.setAction(action); l.setType(klass.getName()); l.setIdList(id.toString()); l.setDetails(CurrentDetails.createDetails()); l.getGraphHolder().setToken(null, token); CurrentDetails.getCreationEvent().addEventLog(l); | CurrentDetails.addLog( action, klass, id ); | public void addLog(String action, Class klass, Long id) { Assert.notNull(action); Assert.notNull(klass); Assert.notNull(id); if (Event.class.isAssignableFrom(klass) || EventLog.class.isAssignableFrom(klass) || EventDiff.class.isAssignableFrom(klass)) { log.debug("Not logging creation of logging type:" + kl... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
Assert.notNull(d); if (isSystemType(klass)) | if ( d == null || isSystemType(klass) ) | public boolean allowLoad(Class<? extends IObject> klass, Details d) { Assert.notNull(klass); Assert.notNull(d); if (isSystemType(klass)) return true; return SecurityFilter.passesFilter(this, d); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
if ( currentDetails.getCreationEvent() == null ) { newDetails.setCreationEvent( previousDetails.getCreationEvent() ); return true; } | protected boolean managedEvent(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { if (!idEqual(previousDetails.getCreationEvent(), currentDetails .getCreationEvent())) { // no one change them. throw new SecurityViolation(String.format( ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java | |
if (locked) { throw new SecurityViolation("Cannot change group for entity:" + obj); } else if (currentDetails.getGroup() == null) { | if ( currentDetails.getGroup() == null ) { | protected boolean managedGroup(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { // previous and current have different ids. either change it and return // true if permitted, or throw an exception. if (!idEqual(previousDetails.getGroup(), cur... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
} if (locked) { throw new SecurityViolation("Object locked! " + "Cannot change group for entity:" + obj); | protected boolean managedGroup(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { // previous and current have different ids. either change it and return // true if permitted, or throw an exception. if (!idEqual(previousDetails.getGroup(), cur... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java | |
throw new SecurityViolation("Cannot change owner for:" + obj); | throw new SecurityViolation("Object locked! " + "Cannot change owner for:" + obj); | protected boolean managedOwner(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { if (!idEqual(previousDetails.getOwner(), currentDetails.getOwner())) { if (locked) { throw new SecurityViolation("Cannot change owner for:" + obj); } // i... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
if (currentDetails.getOwner() == null) { newDetails.setOwner(previousDetails.getOwner()); return true; } | protected boolean managedOwner(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { if (!idEqual(previousDetails.getOwner(), currentDetails.getOwner())) { if (locked) { throw new SecurityViolation("Cannot change owner for:" + obj); } // i... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java | |
protected boolean managedOwner(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { if (!idEqual(previousDetails.getOwner(), currentDetails.getOwner())) { if (locked) { throw new SecurityViolation("Cannot change owner for:" + obj); } // i... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java | ||
if (iObject == null) | if (iObject == null || isSystemType( iObject.getClass() )) | public void markLockedIfNecessary(IObject iObject) { if (iObject == null) return; Set<IObject> s = new HashSet<IObject>(); IObject[] candidates = em.getLockCandidates(iObject); for (IObject object : candidates) { s.add(object); // TODO NEED TO CHECK FOR OWNERSHIP etc. etc. } CurrentDetails.appendLockCandid... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
if (recv.getRuntime().getLoadService().load(file.toString())) { return recv.getRuntime().getTrue(); } return recv.getRuntime().getFalse(); | recv.getRuntime().getLoadService().load(file.toString()); return recv.getRuntime().getTrue(); | public static IRubyObject load(IRubyObject recv, IRubyObject[] args) { RubyString file = (RubyString)args[0]; if (recv.getRuntime().getLoadService().load(file.toString())) { return recv.getRuntime().getTrue(); } return recv.getRuntime().getFalse(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ee934b89304925fd623a76285f84cfb31cb3695f/RubyKernel.java/buggy/src/org/jruby/RubyKernel.java |
Experimenter foundUser = iQuery.get(Experimenter.class,user.getId()); | Experimenter foundUser = internalGetExperimenter(user.getId()); | public void addGroups(Experimenter user, ExperimenterGroup[] groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = iQuery.get(Experimenter.class,user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup f... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
iQuery.get(ExperimenterGroup.class, group.getId()); | internalGetGroup(group.getId()); | public void addGroups(Experimenter user, ExperimenterGroup[] groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = iQuery.get(Experimenter.class,user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup f... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
final LocalUpdate update = iUpdate; final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); ExperimenterGroup group = internalLookupGroup(groupName); copy.getDetails().setGroup(group); securitySystem.doAction(copy, new SecureAction(){ public IObject updateObject(IObject obj) { update.flush(); return null... | public void changeGroup(IObject iObject, String groupName) { // TODO Auto-generated method stub } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java | |
IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); Experimenter owner = internalLookupExperimenter(omeName); copy.getDetails().setOwner(owner); iUpdate.saveObject(copy); | public void changeOwner(IObject iObject, String omeName) { // TODO Auto-generated method stub } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java | |
IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); Permissions p = new Permissions().applyMask(perms); copy.getDetails().setPermissions(p); iUpdate.saveObject(copy); | public void changePermissions(IObject iObject, Permissions perms) { // TODO Auto-generated method stub } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java | |
public Experimenter createExperimenter(Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) | public Experimenter createExperimenter( Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) | public Experimenter createExperimenter(Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) {// TODO check that no other group is default Experimenter e = copyUser( experimenter ); if ( defaultGroup == null || defaultGroup.getId() == null ) { ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
defaultGroupMap.link( getGroup(defaultGroup.getId()), e); | defaultGroupMap.link( internalGetGroup(defaultGroup.getId()), e); | public Experimenter createExperimenter(Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) {// TODO check that no other group is default Experimenter e = copyUser( experimenter ); if ( defaultGroup == null || defaultGroup.getId() == null ) { ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
groupMap.link( getGroup(group.getId()), e); | groupMap.link( internalGetGroup(group.getId()), e); | public Experimenter createExperimenter(Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) {// TODO check that no other group is default Experimenter e = copyUser( experimenter ); if ( defaultGroup == null || defaultGroup.getId() == null ) { ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
return g; | return lookupGroup(g.getName()); | public ExperimenterGroup createGroup(ExperimenterGroup group) { group = copyGroup( group ); ExperimenterGroup g = iUpdate.saveAndReturnObject( group ); return g; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
lookupGroup("system"), | internalLookupGroup("system"), | public Experimenter createSystemUser(Experimenter newSystemUser) { Experimenter e = createExperimenter( newSystemUser, lookupGroup("system"), new ExperimenterGroup[]{ lookupGroup("user") } ); return e; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
Experimenter e = createExperimenter(newUser, lookupGroup("user"),null); | Experimenter e = createExperimenter( newUser, internalLookupGroup("user"),null); | public Experimenter createUser(Experimenter newUser) { Experimenter e = createExperimenter(newUser, lookupGroup("user"),null); return e; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
Experimenter e = getExperimenter(user.getId()); | Experimenter e = internalGetExperimenter(user.getId()); | public void deleteExperimenter( Experimenter user ) { Experimenter e = getExperimenter(user.getId()); int count = jdbc.update("delete from password where experimenter_id = ?", e.getId()); if ( count == 0 ) { log.info("No password found for user " +e.getOmeName() +". ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51bca7b98918ffeec3bfbe06121fa0c606f5da26/AdminImpl.java/buggy/components/server/src/ome/logic/AdminImpl.java |
public MetaClass newSingletonClass() { MetaClass newClass = new MetaClass(getRuntime(), this); | public MetaClass newSingletonClass(RubyModule parentModule) { MetaClass newClass = new MetaClass(getRuntime(), this, parentModule); | public MetaClass newSingletonClass() { MetaClass newClass = new MetaClass(getRuntime(), this); newClass.infectBy(this); return newClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/32d84ae899fd3c367ef3800d0984b69f53209031/RubyClass.java/clean/src/org/jruby/RubyClass.java |
newClass.makeMetaClass(getMetaClass()); | newClass.makeMetaClass(getMetaClass(), newClass); | public RubyClass newSubClass(String name, RubyModule parentModule) { Ruby runtime = getRuntime(); RubyClass newClass = new RubyClass(runtime, runtime.getClasses().getClassClass(), this, parentModule, name); newClass.makeMetaClass(getMetaClass()); newClass.inheritedBy(this); runtim... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/32d84ae899fd3c367ef3800d0984b69f53209031/RubyClass.java/clean/src/org/jruby/RubyClass.java |
Browser browser = model.getBrowser(); ImageDisplay d = browser.getSelectedDisplay(); | public void propertyChange(PropertyChangeEvent pce) { Browser browser = model.getBrowser(); ImageDisplay d = browser.getSelectedDisplay(); String propName = pce.getPropertyName(); if (Browser.POPUP_POINT_PROPERTY.equals(propName)) { Point p = browser.getPopupPoint(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/aaed3948a4c0b3282991cf3a892a7670ca368625/HiViewerControl.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerControl.java | |
browser.setSelectedDisplay((ImageDisplay) pce.getNewValue()); | model.getBrowser().setSelectedDisplay( (ImageDisplay) pce.getNewValue()); | public void propertyChange(PropertyChangeEvent pce) { Browser browser = model.getBrowser(); ImageDisplay d = browser.getSelectedDisplay(); String propName = pce.getPropertyName(); if (Browser.POPUP_POINT_PROPERTY.equals(propName)) { Point p = browser.getPopupPoint(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/aaed3948a4c0b3282991cf3a892a7670ca368625/HiViewerControl.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerControl.java |
ImageDisplay d = model.getBrowser().getSelectedDisplay(); | public void propertyChange(PropertyChangeEvent pce) { Browser browser = model.getBrowser(); ImageDisplay d = browser.getSelectedDisplay(); String propName = pce.getPropertyName(); if (Browser.POPUP_POINT_PROPERTY.equals(propName)) { Point p = browser.getPopupPoint(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/aaed3948a4c0b3282991cf3a892a7670ca368625/HiViewerControl.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerControl.java | |
int availableRows = testHeadlines.length; int nrOfRows = rows.intValue(); if (nrOfRows == 0) { nrOfRows = availableRows; | int availableRows = 0; ArticleItemBean[] articleItemBean; try { articleItemBean = (ArticleItemBean[])loadAllArticlesInFolder(new File("/Test/article/")).toArray(new ArticleItemBean[0]); availableRows = articleItemBean.length; int nrOfRows = rows.intValue(); if (nrOfRows == 0) { nrOfRows = availableRows; } int maxRow... | public void updateDataModel(Integer start, Integer rows) { if (_dataModel == null) { _dataModel = new WFDataModel(); } int availableRows = testHeadlines.length; int nrOfRows = rows.intValue(); if (nrOfRows == 0) { nrOfRows = availableRows; } int maxRow = start.intValue() + nrOfRows; if (maxRow > availableR... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/2cd921b37179b60f73b08e496f3539f6703ee5c0/ArticleListBean.java/clean/src/java/com/idega/block/article/bean/ArticleListBean.java |
int maxRow = start.intValue() + nrOfRows; if (maxRow > availableRows) { maxRow = availableRows; | catch (XmlException e) { e.printStackTrace(); | public void updateDataModel(Integer start, Integer rows) { if (_dataModel == null) { _dataModel = new WFDataModel(); } int availableRows = testHeadlines.length; int nrOfRows = rows.intValue(); if (nrOfRows == 0) { nrOfRows = availableRows; } int maxRow = start.intValue() + nrOfRows; if (maxRow > availableR... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/2cd921b37179b60f73b08e496f3539f6703ee5c0/ArticleListBean.java/clean/src/java/com/idega/block/article/bean/ArticleListBean.java |
for (int i = start.intValue(); i < maxRow; i++) { ArticleListBean a = new ArticleListBean(String.valueOf(i), testHeadlines[i], testPublished[i], testAuthors[i], testStatus[i]); if (i == 5) { a.setTestStyle("color:red"); } _dataModel.set(a, i); | catch (IOException e) { e.printStackTrace(); | public void updateDataModel(Integer start, Integer rows) { if (_dataModel == null) { _dataModel = new WFDataModel(); } int availableRows = testHeadlines.length; int nrOfRows = rows.intValue(); if (nrOfRows == 0) { nrOfRows = availableRows; } int maxRow = start.intValue() + nrOfRows; if (maxRow > availableR... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/2cd921b37179b60f73b08e496f3539f6703ee5c0/ArticleListBean.java/clean/src/java/com/idega/block/article/bean/ArticleListBean.java |
throw new IllegalArgumentException(msg); | throw new ApiUsageException(msg); | public static void errorOnViolation(Class implClass, Method mthd, Object[] args) throws ValidationException { /* find concrete method */ Method implMethod; try { implMethod = implClass.getMethod(mthd.getName(), (Class[]) mthd .getParameterTypes()); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d102caba308a2112d9a1fb39652435611207cd3e/ApiConstraintChecker.java/clean/components/server/src/ome/annotations/ApiConstraintChecker.java |
throw new IllegalArgumentException(msg); | throw new ApiUsageException(msg); | public static void errorOnViolation(Class implClass, Method mthd, Object[] args) throws ValidationException { /* find concrete method */ Method implMethod; try { implMethod = implClass.getMethod(mthd.getName(), (Class[]) mthd .getParameterTypes()); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d102caba308a2112d9a1fb39652435611207cd3e/ApiConstraintChecker.java/clean/components/server/src/ome/annotations/ApiConstraintChecker.java |
throw new IllegalArgumentException(msg); | throw new ApiUsageException(msg); | public static void errorOnViolation(Class implClass, Method mthd, Object[] args) throws ValidationException { /* find concrete method */ Method implMethod; try { implMethod = implClass.getMethod(mthd.getName(), (Class[]) mthd .getParameterTypes()); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d102caba308a2112d9a1fb39652435611207cd3e/ApiConstraintChecker.java/clean/components/server/src/ome/annotations/ApiConstraintChecker.java |
defineMethod("fcntl", Arity.twoArguments()); | protected void initializeClass() { includeModule(getRuntime().getModule("Enumerable")); // TODO: Implement tty? and isatty. We have no real capability to // determine this from java, but if we could set tty status, then // we could invoke jruby differently to allow stdin to retur... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54594cf2641226a173f9dc7981b2fbb511d7061e/IOMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/IOMetaClass.java | |
searchArticlesNode.setVisibleInMenus(false); | public void addArticleViews(IWBundle bundle){ ContentViewManager cViewManager = ContentViewManager.getInstance(bundle.getApplication()); ViewNode contentNode = cViewManager.getContentNode(); DefaultViewNode articleNode = new DefaultViewNode("article",contentNode); articleNode.setJspUri(bundle.getJSPURI("createar... | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/44c7553551d463f44b7cb7cf5d0a43b62412701b/IWBundleStarter.java/buggy/src/java/com/idega/block/article/IWBundleStarter.java | |
assertEquals("nil", RubyNil.inspect(rubyNil).getValue()); | assertEquals("nil", RubyNil.inspect(rubyNil).toString()); | public void testInspect() { assertEquals("nil", RubyNil.inspect(rubyNil).getValue()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/TestRubyNil.java/buggy/test/org/jruby/test/TestRubyNil.java |
assertEquals("", RubyNil.to_s(rubyNil).getValue()); | assertEquals("", RubyNil.to_s(rubyNil).toString()); | public void testToS() { assertEquals("", RubyNil.to_s(rubyNil).getValue()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/TestRubyNil.java/buggy/test/org/jruby/test/TestRubyNil.java |
return RubyFixnum.zero(recv.getRuntime()); } | return RubyFixnum.zero(recv.getRuntime()); } | public static RubyFixnum to_i(IRubyObject recv) { return RubyFixnum.zero(recv.getRuntime()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/39c53cd7958c3b95ef4124a65a62d1e1cac24c84/RubyNil.java/buggy/src/org/jruby/RubyNil.java |
getCurrentContext().pushClass(getClasses().getObjectClass()); | private void init() { getIterStack().push(Iter.ITER_NOT); getFrameStack().push(); topFrame = getCurrentFrame(); getScope().push(); topScope = currentScope(); setCurrentVisibility(Visibility.PRIVATE); classes = new RubyClasses(this); classes.initCoreClasses(); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f75018181746a5807539db933ad4144d55240425/Ruby.java/clean/src/org/jruby/Ruby.java | |
return "SemanticType"+(semanticTypeId==null ? ":Hash"+this.hashCode() : ":"+semanticTypeId); | return "SemanticType"+(semanticTypeId==null ? ":Hash_"+this.hashCode() : ":Id_"+semanticTypeId); | public String toString(){ return "SemanticType"+(semanticTypeId==null ? ":Hash"+this.hashCode() : ":"+semanticTypeId); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/SemanticType.java/clean/components/common/src/ome/model/SemanticType.java |
if (movieIndex == Player.MOVIE_Z) max = maxZ; | MoviePaneMng(MoviePane view, PlayerUIMng playerUIMng, Registry registry, int maxT, int maxZ, MovieSettings settings) { this.view = view; this. playerUIMng = playerUIMng; this.registry = registry; this.maxT = maxT; this.maxZ = maxZ; max = maxT; curSt... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/69d9ca849e67dccda3286f8ae868fd51e5634768/MoviePaneMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/movie/pane/MoviePaneMng.java | |
startTField.setActionCommand(""+START_T); startTField.addActionListener(this); startTField.addFocusListener(this); endTField.setActionCommand(""+END_T); endTField.addActionListener(this); endTField.addFocusListener(this); startZField.setActionCommand(""+START_Z); startZField.addActionListener(this); startZField.addFocu... | attachFieldListeners(startTField, START_T); attachFieldListeners(endTField, END_T); attachFieldListeners(startZField, START_Z); attachFieldListeners(endZField, END_Z); | void attachListeners() { //TexField startTField = view.getMovieStartT(); endTField = view.getMovieEndT(); startZField = view.getMovieStartZ(); endZField = view.getMovieEndZ(); startTField.setActionCommand(""+START_T); startTField.addActionListener(this); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/69d9ca849e67dccda3286f8ae868fd51e5634768/MoviePaneMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/movie/pane/MoviePaneMng.java |
int width, height; width = img.getWidth(); height = img.getHeight(); | public void paintComponent(Graphics g) { super.paintComponent(g); BufferedImage img = model.getDisplayedImage(); if (img == null) return; Graphics2D g2D = (Graphics2D) g; ImagePaintingFactory.setGraphicRenderingSettings(g2D); g2D.drawImage(img, null, 0, 0); if (m... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fd07cb02b8ddef458b76281e758695eaa977dbf0/BrowserCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserCanvas.java | |
Rectangle imgRect = new Rectangle(0, 0, width, height); | Rectangle imgRect = new Rectangle(0, 0, img.getWidth(), img.getHeight()); | public void paintComponent(Graphics g) { super.paintComponent(g); BufferedImage img = model.getDisplayedImage(); if (img == null) return; Graphics2D g2D = (Graphics2D) g; ImagePaintingFactory.setGraphicRenderingSettings(g2D); g2D.drawImage(img, null, 0, 0); if (m... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fd07cb02b8ddef458b76281e758695eaa977dbf0/BrowserCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserCanvas.java |
} else { width = img.getWidth(); height = img.getHeight(); if (x+viewRect.width < imgRect.width) width = x+viewRect.width; if (y+viewRect.height < imgRect.height) height = y+viewRect.height; | public void paintComponent(Graphics g) { super.paintComponent(g); BufferedImage img = model.getDisplayedImage(); if (img == null) return; Graphics2D g2D = (Graphics2D) g; ImagePaintingFactory.setGraphicRenderingSettings(g2D); g2D.drawImage(img, null, 0, 0); if (m... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fd07cb02b8ddef458b76281e758695eaa977dbf0/BrowserCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserCanvas.java | |
public void paintComponent(Graphics g) { super.paintComponent(g); BufferedImage img = model.getDisplayedImage(); if (img == null) return; Graphics2D g2D = (Graphics2D) g; ImagePaintingFactory.setGraphicRenderingSettings(g2D); g2D.drawImage(img, null, 0, 0); if (m... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fd07cb02b8ddef458b76281e758695eaa977dbf0/BrowserCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserCanvas.java | ||
classes.addAll(sourceFileData.getChildren()); | classes.addAll(sourceFileData.getClasses()); | public SortedSet getClasses() { SortedSet classes = new TreeSet(); Iterator iter = this.children.values().iterator(); while (iter.hasNext()) { SourceFileData sourceFileData = (SourceFileData)iter.next(); classes.addAll(sourceFileData.getChildren()); } return classes; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/7f42310aa94d3450acefa63804376619941a31c5/PackageData.java/buggy/cobertura/src/net/sourceforge/cobertura/coveragedata/PackageData.java |
threadContext.callSuper(args); | result = threadContext.callSuper(args); | public void visitSuperNode(SuperNode iVisited) { if (threadContext.getCurrentFrame().getLastClass() == null) { throw new NameError(runtime, "Superclass method '" + threadContext.getCurrentFrame().getLastFunc() + "' disabled."); } Block tmpBlock = ArgsUtil.beginCallArgs(threadContext)... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/87cd159e65e50f4157091c667b2f04e958262442/EvaluateVisitor.java/clean/src/org/jruby/evaluator/EvaluateVisitor.java |
threadContext.callSuper(args); | result = threadContext.callSuper(args); | public void visitZSuperNode(ZSuperNode iVisited) { if (threadContext.getCurrentFrame().getLastClass() == null) { throw new NameError(runtime, "superclass method '" + runtime.getCurrentFrame().getLastFunc() + "' disabled"); } IRubyObject[] args = threadContext.getCurrentFrame().getArg... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/87cd159e65e50f4157091c667b2f04e958262442/EvaluateVisitor.java/clean/src/org/jruby/evaluator/EvaluateVisitor.java |
if (je.getJumpType() == JumpException.JumpType.NextJump) { handleNext(je); } else if (je.getJumpType() == JumpException.JumpType.RedoJump) { handleRedo(je); } else if (je.getJumpType() == JumpException.JumpType.BreakJump) { | if (je.getJumpType() == JumpException.JumpType.BreakJump) { | public IRubyObject begin(Node node) { clearResult(); if (node != null) { try { // for each call to internalEval, push down new stacks (to isolate eval runs that still want to be logically separate pushCurrentInstructionStack(); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ed5fe768829dd43ebf13861d9031b19571d6e898/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java |
} } if (currentException != null && !handlingException) { if (currentException.getJumpType() == JumpException.JumpType.RedoJump) { handleRedo(currentException); } else if (currentException.getJumpType() == JumpException.JumpType.NextJump) { handleNext(currentException); | public IRubyObject begin(Node node) { clearResult(); if (node != null) { try { // for each call to internalEval, push down new stacks (to isolate eval runs that still want to be logically separate pushCurrentInstructionStack(); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ed5fe768829dd43ebf13861d9031b19571d6e898/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java | |
addInstruction(iVisited, exceptionRethrower); | handlingException = true; addInstruction(iVisited, exceptionContinuer); | private void handleNext(JumpException je) { NextNode iVisited = (NextNode)je.getSecondaryData(); while (!(getCurrentInstructionStack().isEmpty() || peekCurrentInstructionBundle().redoable)) { InstructionBundle ib = peekCurrentInstructionBundle(); if (ib.ensured) { ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ed5fe768829dd43ebf13861d9031b19571d6e898/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java |
handlingException = false; | private void handleNext(JumpException je) { NextNode iVisited = (NextNode)je.getSecondaryData(); while (!(getCurrentInstructionStack().isEmpty() || peekCurrentInstructionBundle().redoable)) { InstructionBundle ib = peekCurrentInstructionBundle(); if (ib.ensured) { ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ed5fe768829dd43ebf13861d9031b19571d6e898/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java | |
handlingException = false; | private void handleRedo(JumpException je) { RedoNode iVisited = (RedoNode)je.getSecondaryData(); while (!(getCurrentInstructionStack().isEmpty() || peekCurrentInstructionBundle().redoable)) { InstructionBundle ib = peekCurrentInstructionBundle(); if (ib.ensured) { ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ed5fe768829dd43ebf13861d9031b19571d6e898/EvaluationState.java/buggy/src/org/jruby/evaluator/EvaluationState.java | |
_colorName = null; | final public WikiPage parse(WikiPageBuilder builder) throws ParseException { Token t; label_1: while (true) { switch ((jj_ntk==-1)?jj_ntk():jj_ntk) { case QUOTED_BLOCK: case BOLD: case UNDERLINE: case ITALIC: case LT: case GT: c... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/3b3eb520f27d3c9af235ee5b06769be73322daec/WikiParser.java/clean/wiki/src/org/tcdi/opensource/wiki/parser/WikiParser.java | |
for (Iterator it = nsr.parse().iterator(); it.hasNext();) | nsr.parse(); for (Iterator it = nsr.process().iterator(); it.hasNext();) | public void DISABLEDtestReal() throws Exception { File currentDir = new File(System.getProperty("user.dir"));// TODO Util File mappings = new File(currentDir.getParent() + File.separator + "common" + File.separator + "resources" + File.separator + "Mappings.ome.xml"); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/ExampleUsageTest.java/buggy/components/dsl/test/ome/dsl/utests/ExampleUsageTest.java |
sr = new SaxReader("type.xml"); | File f = new File(ExampleUsageTest.class.getResource("type.xml").getFile()); sr = new SaxReader(f); | protected void setUp() throws Exception { sr = new SaxReader("type.xml"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/ExampleUsageTest.java/buggy/components/dsl/test/ome/dsl/utests/ExampleUsageTest.java |
Set set = sr.parse(); | sr.parse(); Set set = sr.process(); | public void testONE() { Set set = sr.parse(); log.info("Results of parse:" + set); for (Iterator it = set.iterator(); it.hasNext();) { SemanticType st = (SemanticType) it.next(); VelocityHelper vh = new VelocityHelper(); vh.put("type", st); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/ExampleUsageTest.java/buggy/components/dsl/test/ome/dsl/utests/ExampleUsageTest.java |
Set set = sr.parse(); | sr.parse(); Set set = sr.process(); | public void testWithWriting() throws Exception { Set set = sr.parse(); for (Iterator it = set.iterator(); it.hasNext();) { SemanticType st = (SemanticType) it.next(); VelocityHelper vh = new VelocityHelper(); vh.put("type", st); // FileWriter fw = ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/ExampleUsageTest.java/buggy/components/dsl/test/ome/dsl/utests/ExampleUsageTest.java |
Element body = (Element)webResponse.getDOM().getDocumentElement().getElementsByTagName("body").item(0); NodeList elems = body.getElementsByTagName("textarea"); response = elems.item(0).getChildNodes().item(0).getNodeValue(); | NodeList list = webResponse.getDOM().getDocumentElement().getElementsByTagName("div"); int length = list.getLength(); for (int i = 0; i < length; i++) { Element element = (Element)list.item(i); if ("result_box".equals(element.getAttribute("id"))) { Node translation = element.getFirstChild(); if (translation != null) { ... | private static String useGoogleTranslator(String text, TranslationType type) { String response = null; String urlString = "http://translate.google.com/translate_t?text=" + text + "&langpair=" + type.getID(); // disable scripting to avoid requiring js.jar HttpUnitOptions.setScriptingEnabl... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/93b8449904967783211de8a56a69f1cec482d118/TranslatorUtil.java/clean/src/plugins/translator/src/java/org/jivesoftware/spark/translator/TranslatorUtil.java |
int startReal, int endReal, int yStart, int yEnd, PixelsStatsEntry[] histogramData) { this.histogramData = histogramData; this.manager = manager; initSizeBin(); setWindowLimits(mini, maxi); setInputWindow(startReal, endReal); controlOutputStart = yStart; heightStart = tS-yStart; heightEnd = yEnd-topBorder; setKnobO... | int startReal, int endReal, int yStart, int yEnd, PixelsStatsEntry[] histogramData) { this.histogramData = histogramData; this.manager = manager; initSizeBin(); setWindowLimits(mini, maxi); setInputWindow(startReal, endReal); controlOutputStart = yStart; heightStart = tS-yStart; heightEnd = yEnd-topBorder; setKnobO... | HistogramPanel(HistogramDialogManager manager, int mini, int maxi, int startReal, int endReal, int yStart, int yEnd, PixelsStatsEntry[] histogramData) { this.histogramData = histogramData; this.manager = manager; initSizeBin(); setWindowLimits(mini, maxi); setInputWindow(startReal, endReal); //contro... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/HistogramPanel.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramPanel.java |
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