rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k | meta stringlengths 141 403 |
|---|---|---|---|
for (int j = 0; j < menus.length; j++) { | for (int j = 0; j < menus.length; j++) | public void addToMenuBar(JMenu[] menus, boolean before) { JMenuBar bar = getJMenuBar(); if (before) { JMenu[] existingMenus = new JMenu[bar.getMenuCount()]; for (int i = 0; i < existingMenus.length; i++) { existingMenus[i] = bar.getMenu(i); } ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bbd964029121f2811ba2b7cf47a392087032888c/TaskBarView.java/clean/SRC/org/openmicroscopy/shoola/env/ui/TaskBarView.java |
} | public void addToMenuBar(JMenu[] menus, boolean before) { JMenuBar bar = getJMenuBar(); if (before) { JMenu[] existingMenus = new JMenu[bar.getMenuCount()]; for (int i = 0; i < existingMenus.length; i++) { existingMenus[i] = bar.getMenu(i); } ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bbd964029121f2811ba2b7cf47a392087032888c/TaskBarView.java/clean/SRC/org/openmicroscopy/shoola/env/ui/TaskBarView.java | |
UIUtilities.formatToolTipText("Connect to OMEDS.")); | UIUtilities.formatToolTipText("Connect to OMERO.")); | private void createButtons() { buttons[CONNECT_BTN] = new JButton( iconManager.getIcon(IconManager.CONNECT_DS)); buttons[CONNECT_BTN].setToolTipText( UIUtilities.formatToolTipText("Connect to OMEDS.")); buttons[DISCONNECT_BTN] = new JButton( iconManager.getIcon(IconManager.DISCONNECT_DS)); button... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bbd964029121f2811ba2b7cf47a392087032888c/TaskBarView.java/clean/SRC/org/openmicroscopy/shoola/env/ui/TaskBarView.java |
UIUtilities.formatToolTipText("Disconnect from OMEDS.")); | UIUtilities.formatToolTipText("Disconnect from OMERO.")); | private void createButtons() { buttons[CONNECT_BTN] = new JButton( iconManager.getIcon(IconManager.CONNECT_DS)); buttons[CONNECT_BTN].setToolTipText( UIUtilities.formatToolTipText("Connect to OMEDS.")); buttons[DISCONNECT_BTN] = new JButton( iconManager.getIcon(IconManager.DISCONNECT_DS)); button... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bbd964029121f2811ba2b7cf47a392087032888c/TaskBarView.java/clean/SRC/org/openmicroscopy/shoola/env/ui/TaskBarView.java |
buttons[UPDATES_MI] = new JMenuItem("Software Updates", | buttons[UPDATES_MI] = new JMenuItem("About Software", | private void createMenuItems() { buttons[EXIT_MI] = new JMenuItem("Exit", iconManager.getIcon(IconManager.EXIT)); buttons[CONNECT_MI] = new JMenuItem("Connect to OMEDS", iconManager.getIcon(IconManager.CONNECT_DS)); buttons[DISCONNECT_MI] = new JMenuItem("Disconnect from OMEDS", iconManage... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bbd964029121f2811ba2b7cf47a392087032888c/TaskBarView.java/clean/SRC/org/openmicroscopy/shoola/env/ui/TaskBarView.java |
return this.string; | return value; | public String getString() { return this.string; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/086abcd7e5107a6e6813ecb64810deff5780af95/RubyString.java/clean/org/jruby/RubyString.java |
public void setString(String string) { this.string = string; | public void setString(String str) { value = str; | public void setString(String string) { this.string = string; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/086abcd7e5107a6e6813ecb64810deff5780af95/RubyString.java/clean/org/jruby/RubyString.java |
public ModuleExecution(Integer moduleExecutionId, String status, Double attributeDbTime, boolean virtualMex, String inputTag, String iteratorTag, String dependence, Double attributeSortTime, String errorMessage, Date timestamp, Double attributeCreateTime, String newFeatureTag, Double totalTime, org.openmicroscopy.omero... | public ModuleExecution() { | public ModuleExecution(Integer moduleExecutionId, String status, Double attributeDbTime, boolean virtualMex, String inputTag, String iteratorTag, String dependence, Double attributeSortTime, String errorMessage, Date timestamp, Double attributeCreateTime, String newFeatureTag, Double totalTime, org.openmicroscopy.o... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public org.openmicroscopy.omero.model.Dataset getDataset() { | public Dataset getDataset() { | public org.openmicroscopy.omero.model.Dataset getDataset() { return this.dataset; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public org.openmicroscopy.omero.model.Experimenter getExperimenter() { | public Experimenter getExperimenter() { | public org.openmicroscopy.omero.model.Experimenter getExperimenter() { return this.experimenter; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public org.openmicroscopy.omero.model.Group getGroup() { | public Group getGroup() { | public org.openmicroscopy.omero.model.Group getGroup() { return this.group; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public org.openmicroscopy.omero.model.Image getImage() { | public Image getImage() { | public org.openmicroscopy.omero.model.Image getImage() { return this.image; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public void setDataset(org.openmicroscopy.omero.model.Dataset dataset) { | public void setDataset(Dataset dataset) { | public void setDataset(org.openmicroscopy.omero.model.Dataset dataset) { this.dataset = dataset; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public void setExperimenter(org.openmicroscopy.omero.model.Experimenter experimenter) { | public void setExperimenter(Experimenter experimenter) { | public void setExperimenter(org.openmicroscopy.omero.model.Experimenter experimenter) { this.experimenter = experimenter; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public void setGroup(org.openmicroscopy.omero.model.Group group) { | public void setGroup(Group group) { | public void setGroup(org.openmicroscopy.omero.model.Group group) { this.group = group; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public void setImage(org.openmicroscopy.omero.model.Image image) { | public void setImage(Image image) { | public void setImage(org.openmicroscopy.omero.model.Image image) { this.image = image; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
public void setVirtualMex(boolean virtualMex) { | public void setVirtualMex(Boolean virtualMex) { | public void setVirtualMex(boolean virtualMex) { this.virtualMex = virtualMex; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/ModuleExecution.java/buggy/components/common/src/org/openmicroscopy/omero/model/ModuleExecution.java |
throws DSOutOfServiceException, DSAccessException; | throws DSOutOfServiceException, DSAccessException; | public void updateUserInputAttributes(List attributes) throws DSOutOfServiceException, DSAccessException; | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/f5113c7a4ff99bcbee06e1b48554259a952e1a44/SemanticTypesService.java/buggy/SRC/org/openmicroscopy/shoola/env/data/SemanticTypesService.java |
calendar.setFirstDayOfWeek(Calendar.MONDAY); | formatWeekYear(Calendar.MONDAY, toAppendTo); break; | public StringBuffer format(Date date, StringBuffer toAppendTo, FieldPosition fieldPosition) { calendar.setTime(date); Iterator iter = compiledPattern.iterator(); while (iter.hasNext()) { Token token = (Token) iter.next(); switch (token.getFormat()) { ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e0ef4a00b8bf2b12e8991a00385ac0a14c9bb461/RubyDateFormat.java/buggy/src/org/jruby/util/RubyDateFormat.java |
value = calendar.get(Calendar.WEEK_OF_YEAR) - 1; if (value < 10) { toAppendTo.append('0'); } toAppendTo.append(value); calendar.setFirstDayOfWeek(Calendar.SUNDAY); | formatWeekYear(Calendar.SUNDAY, toAppendTo); | public StringBuffer format(Date date, StringBuffer toAppendTo, FieldPosition fieldPosition) { calendar.setTime(date); Iterator iter = compiledPattern.iterator(); while (iter.hasNext()) { Token token = (Token) iter.next(); switch (token.getFormat()) { ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e0ef4a00b8bf2b12e8991a00385ac0a14c9bb461/RubyDateFormat.java/buggy/src/org/jruby/util/RubyDateFormat.java |
throw new PropertyException("No method to set \"" + _vname + | throw new PropertyException("No method to set \"" + getVariableName() + | public final void setValue (Context context, Object newValue) throws PropertyException { if (!context.set(_names, newValue)) { throw new PropertyException("No method to set \"" + _vname + "\" to type " + ((newValue == null) ? "null" : newV... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/976cc762ab65b58fbb5a81d83d913780b9d31fd4/GlobalVariable.java/clean/webmacro/src/org/webmacro/engine/GlobalVariable.java |
return "global:" + _vname; | return "global:" + getVariableName(); | public final String toString () { return "global:" + _vname; } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/976cc762ab65b58fbb5a81d83d913780b9d31fd4/GlobalVariable.java/clean/webmacro/src/org/webmacro/engine/GlobalVariable.java |
return getValue() > otherVal ? 1 : getValue() < otherVal ? -1 : 0; | return getLongValue() > otherVal ? 1 : getLongValue() < otherVal ? -1 : 0; | protected int compareValue(RubyNumeric other) { if (other instanceof RubyBignum) { return ((RubyBignum)other).compareValue(this) * -1; } else if (other instanceof RubyFloat) { double otherVal = other.getDoubleValue(); double thisVal = getDoubleValue(); retur... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/786cea08c1dd2092a02d1254b49fbee371ace5f9/RubyFixnum.java/buggy/org/jruby/RubyFixnum.java |
public static RubyClass createFixnumClass(Ruby ruby) { RubyClass fixnumClass = ruby.defineClass("Fixnum", ruby.getClasses().getIntegerClass()); fixnumClass.defineMethod("to_s", CallbackFactory.getMethod(RubyFixnum.class, "to_s")); fixnumClass.defineMethod("to_str", CallbackFactory.getMethod(RubyFi... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/786cea08c1dd2092a02d1254b49fbee371ace5f9/RubyFixnum.java/buggy/org/jruby/RubyFixnum.java | ||
return ruby.fixnumCache[(int) value]; | RubyFixnum newNum = ruby.fixnumCache[(int) value]; if (newNum == null) { newNum = new RubyFixnum(ruby, value); ruby.fixnumCache[(int) value] = newNum; } return newNum; } else { return new RubyFixnum(ruby, value); | public static RubyFixnum newFixnum(Ruby ruby, long value) { // Cache for Fixnums (Performance) if ((value & ~Ruby.FIXNUM_CACHE_MAX) == 0) { return ruby.fixnumCache[(int) value]; } return new RubyFixnum(ruby, value); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/786cea08c1dd2092a02d1254b49fbee371ace5f9/RubyFixnum.java/buggy/org/jruby/RubyFixnum.java |
return new RubyFixnum(ruby, value); | public static RubyFixnum newFixnum(Ruby ruby, long value) { // Cache for Fixnums (Performance) if ((value & ~Ruby.FIXNUM_CACHE_MAX) == 0) { return ruby.fixnumCache[(int) value]; } return new RubyFixnum(ruby, value); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/786cea08c1dd2092a02d1254b49fbee371ace5f9/RubyFixnum.java/buggy/org/jruby/RubyFixnum.java | |
return newFixnum(getRuby(), getValue() / other.getLongValue()); | return newFixnum(getRuby(), getLongValue() / other.getLongValue()); | public RubyNumeric op_div(RubyObject num) { RubyNumeric other = numericValue(num); if (other instanceof RubyFloat) { return RubyFloat.newFloat(getRuby(), getDoubleValue()).op_div(other); } else if (other instanceof RubyBignum) { return RubyBignum.newBignum(getRuby(), getLo... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/786cea08c1dd2092a02d1254b49fbee371ace5f9/RubyFixnum.java/buggy/org/jruby/RubyFixnum.java |
return newFixnum(getRuby(), getValue() % other.getLongValue()); | return newFixnum(getRuby(), getLongValue() % other.getLongValue()); | public RubyNumeric op_mod(RubyObject num) { RubyNumeric other = numericValue(num); if (other instanceof RubyFloat) { return RubyFloat.newFloat(getRuby(), getDoubleValue()).op_mod(other); } else if (other instanceof RubyBignum) { return RubyBignum.newBignum(getRuby(), getLo... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/786cea08c1dd2092a02d1254b49fbee371ace5f9/RubyFixnum.java/buggy/org/jruby/RubyFixnum.java |
return RubyString.newString(getRuby(), String.valueOf(getValue())); | return RubyString.newString(getRuby(), String.valueOf(getLongValue())); | public RubyString to_s() { return RubyString.newString(getRuby(), String.valueOf(getValue())); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/786cea08c1dd2092a02d1254b49fbee371ace5f9/RubyFixnum.java/buggy/org/jruby/RubyFixnum.java |
{ JPanel p = new JPanel(); p.setBorder(new EtchedBorder()); p.setLayout(new GridBagLayout()); GridBagConstraints c = new GridBagConstraints(); c.anchor = GridBagConstraints.NORTHWEST; c.fill = GridBagConstraints.BOTH; c.weighty = 1; c.insets = new Insets(3, 3, 3, 3); c.weightx = 0.4; p.add(new JScrollPane(annotationA... | { JPanel p = new JPanel(); p.setBorder(new EtchedBorder()); p.setLayout(new GridBagLayout()); GridBagConstraints c = new GridBagConstraints(); c.anchor = GridBagConstraints.NORTHWEST; c.fill = GridBagConstraints.BOTH; c.weighty = 1; c.insets = new Insets(3, 3, 3, 3); c.weightx = 0.4; p.add(new JScrollPane(annotationA... | private JPanel buildAnnotationPanel() { JPanel p = new JPanel(); p.setBorder(new EtchedBorder()); p.setLayout(new GridBagLayout()); GridBagConstraints c = new GridBagConstraints(); // griddy constraints c.anchor = GridBagConstraints.NORTHWEST; c.fill = GridBagConstraints.BOTH; ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
{ JPanel p = new JPanel(); p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS)); p.add(new JLabel(TITLE)); p.add(messageComponent); return UIUtilities.buildComponentPanel(p); } | { JPanel p = new JPanel(); p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS)); p.add(new JLabel(TITLE)); p.add(messageComponent); return UIUtilities.buildComponentPanel(p); } | private JPanel buildCommentsPanel() { JPanel p = new JPanel(); p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS)); p.add(new JLabel(TITLE)); p.add(messageComponent); return UIUtilities.buildComponentPanel(p); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
{ setLayout(new BoxLayout(this, BoxLayout.Y_AXIS)); add(buildCommentsPanel()); add(Box.createRigidArea(SMALL_V_SPACER_SIZE)); add(new JSeparator()); add(Box.createRigidArea(SMALL_V_SPACER_SIZE)); add(buildAnnotationPanel()); add(Box.createVerticalGlue()); } | { setLayout(new BoxLayout(this, BoxLayout.Y_AXIS)); add(buildCommentsPanel()); add(Box.createRigidArea(SMALL_V_SPACER_SIZE)); add(new JSeparator()); add(Box.createRigidArea(SMALL_V_SPACER_SIZE)); add(buildAnnotationPanel()); add(Box.createVerticalGlue()); } | private void buildGUI() { setLayout(new BoxLayout(this, BoxLayout.Y_AXIS)); add(buildCommentsPanel()); add(Box.createRigidArea(SMALL_V_SPACER_SIZE)); add(new JSeparator()); add(Box.createRigidArea(SMALL_V_SPACER_SIZE)); add(buildAnnotationPanel()); add(Box.createVerticalGlue()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
{ listModel.removeAllElements(); | { listModel.removeAllElements(); | private void formatList(String[] objects) { // remove all users from list before adding new listModel.removeAllElements(); // add each user to list Timestamp date; DateFormat df = DateFormat.getDateInstance(); AnnotationData data; List list; for (int i = 0; i < objects.l... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
Timestamp date; DateFormat df = DateFormat.getDateInstance(); AnnotationData data; List list; for (int i = 0; i < objects.length; i++) { list = getDataObjectAnnotation(i); data = ((AnnotationData) list.get(0)); date = data.getLastModified(); if (date == null) date = new Timestamp(new Date().getTime());; listModel.add... | Timestamp date; DateFormat df = DateFormat.getDateInstance(); AnnotationData data; List list; for (int i = 0; i < objects.length; i++) { list = getDataObjectAnnotation(i); data = ((AnnotationData) list.get(0)); date = data.getLastModified(); if (date == null) date = new Timestamp(new Date().getTime());; listModel.add... | private void formatList(String[] objects) { // remove all users from list before adding new listModel.removeAllElements(); // add each user to list Timestamp date; DateFormat df = DateFormat.getDateInstance(); AnnotationData data; List list; for (int i = 0; i < objects.l... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
{ Map annotations = model.getAnnotations(); Long ownerID = (Long) annotatedMap.get(new Integer(index)); if (ownerID == null) return new ArrayList(); return (List) annotations.get(ownerID); } | { Map annotations = model.getAnnotations(); Long ownerID = (Long) annotatedMap.get(new Integer(index)); if (ownerID == null) return new ArrayList(); return (List) annotations.get(ownerID); } | private List getDataObjectAnnotation(int index) { Map annotations = model.getAnnotations(); Long ownerID = (Long) annotatedMap.get(new Integer(index)); if (ownerID == null) return new ArrayList(); //empty list return (List) annotations.get(ownerID); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
{ messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, | { messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, | private void initComponents() { messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, BoxLayout.Y_AXIS)); messageComponent.add(new JLabel(MESSAGE)); messageComponent.add(new JLabel(BODY)); messageComponent.setVisible(false); annotatedMap = new HashMap(); a... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
messageComponent.add(new JLabel(MESSAGE)); | messageComponent.add(new JLabel(MESSAGE)); | private void initComponents() { messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, BoxLayout.Y_AXIS)); messageComponent.add(new JLabel(MESSAGE)); messageComponent.add(new JLabel(BODY)); messageComponent.setVisible(false); annotatedMap = new HashMap(); a... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
messageComponent.setVisible(false); annotatedMap = new HashMap(); annotationArea = new MultilineLabel(); annotationArea.setBorder(new TitledBorder("Annotation")); annotationArea.setEditable(true); listModel = new DefaultListModel(); annotatedList = new JList(listModel); listComponent = new JScrollPane(annotatedList); l... | messageComponent.setVisible(false); annotatedMap = new HashMap(); annotationArea = new MultilineLabel(); annotationArea.setBorder(new TitledBorder("Annotation")); annotationArea.setEditable(true); listModel = new DefaultListModel(); annotatedList = new JList(listModel); listComponent = new JScrollPane(annotatedList); l... | private void initComponents() { messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, BoxLayout.Y_AXIS)); messageComponent.add(new JLabel(MESSAGE)); messageComponent.add(new JLabel(BODY)); messageComponent.setVisible(false); annotatedMap = new HashMap(); a... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
annotatedList.addMouseListener(new MouseAdapter() { public void mouseClicked(MouseEvent e) { | annotatedList.addMouseListener(new MouseAdapter() { public void mouseClicked(MouseEvent e) { | private void initComponents() { messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, BoxLayout.Y_AXIS)); messageComponent.add(new JLabel(MESSAGE)); messageComponent.add(new JLabel(BODY)); messageComponent.setVisible(false); annotatedMap = new HashMap(); a... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
} }); annotationArea.getDocument().addDocumentListener( | } }); annotationArea.getDocument().addDocumentListener( | private void initComponents() { messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, BoxLayout.Y_AXIS)); messageComponent.add(new JLabel(MESSAGE)); messageComponent.add(new JLabel(BODY)); messageComponent.setVisible(false); annotatedMap = new HashMap(); a... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
} | } | private void initComponents() { messageComponent = new JPanel(); messageComponent.setLayout(new BoxLayout(messageComponent, BoxLayout.Y_AXIS)); messageComponent.add(new JLabel(MESSAGE)); messageComponent.add(new JLabel(BODY)); messageComponent.setVisible(false); annotatedMap = new HashMap(); a... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
} | } | public void mouseClicked(MouseEvent e) { if (e.getClickCount() == 1) { showSingleAnnotation(); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
{ int index = annotatedList.getSelectedIndex(); if (index == -1) return; List list = getDataObjectAnnotation(index); if (list.size() > 0) { AnnotationData data = (AnnotationData) list.get(0); annotationArea.setText(data.getText()); } } | { int index = annotatedList.getSelectedIndex(); if (index == -1) return; List list = getDataObjectAnnotation(index); if (list.size() > 0) { AnnotationData data = (AnnotationData) list.get(0); annotationArea.setText(data.getText()); } } | private void showSingleAnnotation() { int index = annotatedList.getSelectedIndex(); if (index == -1) return; List list = getDataObjectAnnotation(index); if (list.size() > 0) { AnnotationData data = (AnnotationData) list.get(0); annotationArea.setText(data.getText()); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorUI.java |
menu.add(new JMenuItem( controller.getAction(HiViewerControl.VIEW_CGCI))); menu.add(new JSeparator(JSeparator.HORIZONTAL)); | private JMenu createViewMenu() { JMenu menu = new JMenu("View"); menu.setMnemonic(KeyEvent.VK_V); //menu.add(new JMenuItem(controller.getAction(HiViewerControl.VIEW_PDI))); //menu.add(new JMenuItem( //s controller.getAction(HiViewerControl.VIEW_CGCI))); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/146920a8791fff71320ced0f240b9d8f3d319a13/HiViewerWin.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerWin.java | |
System.err.println("looking at dataset ..."+browserDataset.getID()); | private BrowserDatasetData findDatasetData(int dsId) { // go through some silliness to find the BrowserDatasetData // that corresponds to ds. must look at _all_ datasets - not // just those currently being displayed Iterator iter = allDatasets.iterator(); BrowserDatasetData browserDataset = null; while (iter.h... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e1c1190cf5c65047948165a5ab4e76d3d8909851/DatasetBrowserCanvas.java/buggy/SRC/org/openmicroscopy/shoola/agents/zoombrowser/piccolo/DatasetBrowserCanvas.java | |
System.err.println("selecting exec with ds ..."+dsId); | public void selectChainExecution(ChainExecutionData exec) { if (exec == null) { setSelectedDataset(null); return; } DatasetData ds = exec.getDataset(); int dsId = ds.getID(); System.err.println("selecting exec with ds ..."+dsId); DatasetNode n = null; BrowserDatasetData browserDataset = findDatasetData(dsId... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e1c1190cf5c65047948165a5ab4e76d3d8909851/DatasetBrowserCanvas.java/buggy/SRC/org/openmicroscopy/shoola/agents/zoombrowser/piccolo/DatasetBrowserCanvas.java | |
System.err.println("found dataset data.."+browserDataset); | public void selectChainExecution(ChainExecutionData exec) { if (exec == null) { setSelectedDataset(null); return; } DatasetData ds = exec.getDataset(); int dsId = ds.getID(); System.err.println("selecting exec with ds ..."+dsId); DatasetNode n = null; BrowserDatasetData browserDataset = findDatasetData(dsId... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e1c1190cf5c65047948165a5ab4e76d3d8909851/DatasetBrowserCanvas.java/buggy/SRC/org/openmicroscopy/shoola/agents/zoombrowser/piccolo/DatasetBrowserCanvas.java | |
if (dataset !=null) System.err.println("setting selected dataset .."+dataset.getID()); | public void setSelectedDataset(BrowserDatasetData dataset) { // if they're the same, return // except for if it's null. then we might need to redraw if (dataset == selectedDataset && dataset != null) return; if (selectedDataset != null) selectedDataset.getNode().setHighlighted(false); if (dataset !=null) Sy... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e1c1190cf5c65047948165a5ab4e76d3d8909851/DatasetBrowserCanvas.java/buggy/SRC/org/openmicroscopy/shoola/agents/zoombrowser/piccolo/DatasetBrowserCanvas.java | |
public static void main(String args[]) { int i, j, n = Integer.parseInt(args[0]); int x[] = new int[n]; int y[] = new int[n]; for (i = 0; i < n; i++) x[i] = i ; for (j = n-1; j >= 0; j--) y[j] = x[j]; System.out.println(y[n-1]); } | 53330 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53330/eb6c850277407b38bcaefb81155941da0f27b849/ary.java/buggy/tests/shootout/java-start/ary.java | ||
TitlePanel titlePanel = new TitlePanel(Res.getString("title.add.contact.group"), Res.getString("message.add.contact.to.list"), SparkRes.getImageIcon(SparkRes.USER1_32x32), true); | TitlePanel titlePanel = new TitlePanel(Res.getString("title.add.contact"), Res.getString("message.add.contact.to.list"), SparkRes.getImageIcon(SparkRes.USER1_32x32), true); | public void showRosterDialog(JFrame parent) { TitlePanel titlePanel = new TitlePanel(Res.getString("title.add.contact.group"), Res.getString("message.add.contact.to.list"), SparkRes.getImageIcon(SparkRes.USER1_32x32), true); JPanel mainPanel = new JPanel(); mainPanel.setLayout(new BorderLayout(... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/f0a2c9275d080f9ce27d62fcb2dc726a0b45bb64/RosterDialog.java/buggy/src/java/org/jivesoftware/spark/ui/RosterDialog.java |
return pathname.endsWith(".jar") || pathname.endsWith(".zip") || pathname.endsWith(".war") || pathname.endsWith(".ear") || pathname.endsWith(".sar"); | return ArchiveUtil.isArchive(pathname); | boolean isArchive() { if (!isFile()) { return false; } return pathname.endsWith(".jar") || pathname.endsWith(".zip") || pathname.endsWith(".war") || pathname.endsWith(".ear") || pathname.endsWith(".sar"); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/ea44d50de680cfb1f234670ee0209ccd6aa03416/CoberturaFile.java/buggy/cobertura/src/net/sourceforge/cobertura/instrument/CoberturaFile.java |
listeners = new HashSet(); | public BrowserManager() { browserList = new ArrayList(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e83036080b3a8ade884eca150f3f3c2004b556c9/BrowserManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserManager.java | |
localNames.decreaseBlockLevel(); | localNames.setBlockLevel(localNames.getBlockLevel() - 1); | public StackElement pop() { localNames.decreaseBlockLevel(); return super.pop(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/bfbf574a72dd640d8cff4544774a0d26a18665d8/BlockNamesStack.java/clean/src/org/jruby/parser/BlockNamesStack.java |
localNames.increaseBlockLevel(); | localNames.setBlockLevel(localNames.getBlockLevel() + 1); | public void push(StackElement newElement) { localNames.increaseBlockLevel(); super.push(newElement); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/bfbf574a72dd640d8cff4544774a0d26a18665d8/BlockNamesStack.java/clean/src/org/jruby/parser/BlockNamesStack.java |
Java.createJavaModule(this); | private void initCoreClasses() { ObjectMetaClass objectMetaClass = new ObjectMetaClass(this); objectMetaClass.initializeClass(); objectClass = objectMetaClass; objectClass.setConstant("Object", objectClass); RubyClass moduleClass = new ModuleMetaClass(this, objectClass); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f621b644a7b64cb12bdf5d848d9e284e023964f4/Ruby.java/clean/src/org/jruby/Ruby.java | |
loadService.registerBuiltin("java.rb", new BuiltinScript("javasupport")); | loadService.registerBuiltin("java.rb", new Library() { public void load(IRuby runtime) throws IOException { Java.createJavaModule(runtime); new BuiltinScript("javasupport").load(runtime); } }); | private void initLibraries() { loadService = new LoadService(this); loadService.registerBuiltin("java.rb", new BuiltinScript("javasupport")); loadService.registerBuiltin("socket.rb", new SocketLibrary()); loadService.registerBuiltin("rbconfig.rb", new RbConfigLibrary()); for (int ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f621b644a7b64cb12bdf5d848d9e284e023964f4/Ruby.java/clean/src/org/jruby/Ruby.java |
in.close(); | if (in != null) in.close(); | public void parse() throws IOException, TemplateException { if (!_parsed) { Block newContent = null; Map newParameters = null; Map newMacros = null; Reader in = null; try { Parser parser = getParser(); in = getReader(); BlockBuilder bb = p... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/8f5880751893a7e5dd9da25d036747a39c9b25b5/WMTemplate.java/buggy/webmacro/src/org/webmacro/engine/WMTemplate.java |
return getTemplate(templateName); | Template t = getTemplate(templateName); return t; | public Template handle(WebContext context) throws HandlerException { Object output = new Object(); String templateName; // get the form variables output = (String) context.getForm("loadFile"); name = (String) context.getForm("name"); email = (String) context.getForm("email"); ... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/4f312fd00a74365a2671f796aeebcfbe9888b8cc/GuestBook.java/clean/webmacro/examples/GuestBook.java |
defineGlobalDEBUG(runtime); | private void initializeRuntime(final IRuby runtime, String filename) { IRubyObject argumentArray = runtime.newArray(JavaUtil.convertJavaArrayToRuby(runtime, commandline.getScriptArguments())); runtime.setVerbose(runtime.newBoolean(commandline.isVerbose())); defineGlobalVERBOSE(runtime); ... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a5d41074f98a47c0108b1a75c44775c0f6e4e87b/Main.java/buggy/src/org/jruby/Main.java | |
out.println(" -d set debugging flags (set $DEBUG to true)"); out.println(" -v print version number, then turn on verbose mode"); | public void printUsage() { if (!hasPrintedUsage) { out.println("Usage: jruby [switches] [--] [rubyfile.rb] [arguments]"); out.println(" -e 'command' one line of script. Several -e's allowed. Omit [programfile]"); out.println(" -b benchmark mode, times the script execution"); out... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a5d41074f98a47c0108b1a75c44775c0f6e4e87b/Main.java/buggy/src/org/jruby/Main.java | |
registry.getUserNotifier().notifyInfo("Data Saving Cancellation", info); | public void handleCancellation() { String info = "The data saving has been cancelled."; registry.getLogger().info(this, info); // registry.getUserNotifier().notifyInfo("Data Saving Cancellation", // info); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9794ffbd035a4de717ee211573b4844dd0eb3371/EditorLoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/EditorLoader.java | |
firePropertyChange(LOCALIZE_IMAGE_DISPLAY, oldObject, newObject); | firePropertyChange(ClipBoard.LOCALIZE_IMAGE_DISPLAY, oldObject, newObject); | void setSelectedNode() { DefaultMutableTreeNode node = (DefaultMutableTreeNode) getLastSelectedPathComponent(); if (selectedNode == node) return; ImageDisplay newObject = (ImageDisplay) node.getUserObject(); ImageDisplay oldObject = null; if (selectedNode != null) ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/SearchResultsPane.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/SearchResultsPane.java |
return getCurrentFrame().isBlockGiven(); | return getCurrentFrame().isBlockGiven() && blockStack.peek() != null; | public boolean isBlockGiven() { return getCurrentFrame().isBlockGiven(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/50d6342dd5da06c42d25bc955addce6aaa0e6b97/ThreadContext.java/buggy/src/org/jruby/runtime/ThreadContext.java |
prev != null ? prev.cloneBlock() : null, | prev, | public RubyBlock cloneBlock() { return new RubyBlock( var, body, self, frame, scope, klass, iter, vmode, flags, dynamicVars, origThread, prev != null ? prev.cloneBlock() : null,... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e774974ded4f5d3e83d7f3e7d5f152a6de3fffee/RubyBlock.java/buggy/org/jruby/runtime/RubyBlock.java |
return null; | return "RecentChanges"; | public String getWikiPageName(WikiSystem wiki, WebContext wc) { return null; } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/76bb847e1a32516a74762100398ded03f39feec8/RecentChangesAction.java/buggy/wiki/src/org/tcdi/opensource/wiki/servlet/RecentChangesAction.java |
isName = false; | ProjectEditorManager(ProjectEditor view, DataManagerCtrl agentCtrl, ProjectData model) { this.view = view; this.agentCtrl = agentCtrl; this.model = model; nameChange = false; isName = false; datasetsToRemove = new ArrayList(); datasetsToAdd = new ArrayList(); datasetsToAddToRemove = new ArrayList(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1ed79437fda6d8f6b2566c6fe677bfaaf3352055/ProjectEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/project/ProjectEditorManager.java | |
nameField.addMouseListener(this); | void initListeners() { //buttons attachButtonListener(view.getViewButton(), VIEW); attachButtonListener(view.getSaveButton(), SAVE); attachButtonListener(view.getAddButton(), ADD); attachButtonListener(view.getRemoveButton(), REMOVE); attachButtonListener(view.getResetButton(), RESE... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1ed79437fda6d8f6b2566c6fe677bfaaf3352055/ProjectEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/project/ProjectEditorManager.java | |
view.getSaveButton().setEnabled(isName); | view.getSaveButton().setEnabled(true); | public void insertUpdate(DocumentEvent e) { view.getSaveButton().setEnabled(isName); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1ed79437fda6d8f6b2566c6fe677bfaaf3352055/ProjectEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/project/ProjectEditorManager.java |
view.getSaveButton().setEnabled(isName); | view.getSaveButton().setEnabled(true); | public void removeUpdate(DocumentEvent e) { view.getSaveButton().setEnabled(isName); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1ed79437fda6d8f6b2566c6fe677bfaaf3352055/ProjectEditorManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/project/ProjectEditorManager.java |
LocalPreferences localPref = SettingsManager.getLocalPreferences(); if (localPref.isIdleOn()) { int delay = localPref.getIdleTime() * 60000; if (Spark.isWindows()) { try { setIdleListener(delay); } catch (Exception e) { Log.error(e); } | if (Spark.isWindows()) { try { setIdleListener(); } catch (Exception e) { Log.error(e); | public void initializeSession(XMPPConnection connection, String username, String password) { this.connection = connection; this.username = username; this.password = password; this.userBareAddress = StringUtils.parseBareAddress(connection.getUser()); // create workgroup session ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/743d2e6b128400d102d4977992944808419ad957/SessionManager.java/clean/src/java/org/jivesoftware/spark/SessionManager.java |
private void setIdleListener(final long mill) throws Exception { | private void setIdleListener() throws Exception { | private void setIdleListener(final long mill) throws Exception { final Timer timer = new Timer(); timer.scheduleAtFixedRate(new TimerTask() { public void run() { long idleTime = SystemInfo.getSessionIdleTime(); boolean isLocked = SystemInfo.isSessionLocked(); ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/743d2e6b128400d102d4977992944808419ad957/SessionManager.java/clean/src/java/org/jivesoftware/spark/SessionManager.java |
if (idleTime > mill) { | if (idleTime > delay) { | private void setIdleListener(final long mill) throws Exception { final Timer timer = new Timer(); timer.scheduleAtFixedRate(new TimerTask() { public void run() { long idleTime = SystemInfo.getSessionIdleTime(); boolean isLocked = SystemInfo.isSessionLocked(); ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/743d2e6b128400d102d4977992944808419ad957/SessionManager.java/clean/src/java/org/jivesoftware/spark/SessionManager.java |
if (idleTime > mill) { | if (idleTime > delay) { | public void run() { long idleTime = SystemInfo.getSessionIdleTime(); boolean isLocked = SystemInfo.isSessionLocked(); if (idleTime > mill) { try { // Handle if spark is not connected to the server. ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/743d2e6b128400d102d4977992944808419ad957/SessionManager.java/clean/src/java/org/jivesoftware/spark/SessionManager.java |
buttonPanel.add(Box.createHorizontalStrut(250)); | buttonPanel.add(Box.createHorizontalStrut(100)); buttonPanel.add(setDefaultBtn); buttonPanel.add(Box.createHorizontalStrut(50)); | void buildUI() { JPanel panel = new JPanel(); panel.setLayout(new BoxLayout(panel, BoxLayout.Y_AXIS)); panel.add(createLabelText(groupNameLabel, groupName, 20)); panel.add(Box.createRigidArea(new Dimension(5, 5))); panel.add(createLabelText(descriptionLabel, description, 60)); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e816110341e2f84a3681405f6c01dc8e685db8b4/GroupsTab.java/clean/components/tools/admin/src/adminTool/groupPanel/GroupsTab.java |
ImageIcon removeUserIcon = ImageFactory.get().image( ImageFactory.RIGHT_ARROW); | void createActionButtons() { saveBtn = new JButton("Save"); ImageIcon addUserIcon = ImageFactory.get().image( ImageFactory.LEFT_ARROW); ImageIcon removeUserIcon = ImageFactory.get().image( ImageFactory.RIGHT_ARROW); ImageIcon addGroupIcon = ImageFactory.get(... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e816110341e2f84a3681405f6c01dc8e685db8b4/GroupsTab.java/clean/components/tools/admin/src/adminTool/groupPanel/GroupsTab.java | |
setDefaultBtn.addActionListener(new SetDefaultAction(controller)); | public void setController(GroupsTabController controller) { this.controller = controller; userList.setController(controller); groupList.setController(controller); saveBtn.addActionListener(new SaveAction(controller)); addGroupBtn.addActionListener(new GroupAction(GroupAction.ADD, ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e816110341e2f84a3681405f6c01dc8e685db8b4/GroupsTab.java/clean/components/tools/admin/src/adminTool/groupPanel/GroupsTab.java | |
if (selection2D == null) continue; | public void iterate(ROI5D roi) throws DataSourceException { if (roi == null) throw new NullPointerException("No ROI."); PlaneArea selection2D; PlanePoint[] points; PlaneDef pd; notifyIterationStart(); try { //Iterate in ZWT order and notify observers. ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c3acf0375531681576d4a65f174981535a8919ae/PointIterator.java/clean/SRC/org/openmicroscopy/shoola/env/rnd/roi/PointIterator.java | |
super(displayedDocument); | this.dd = displayedDocument; | public MainController(DisplayedDocument displayedDocument) { super(displayedDocument); } | 57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/57d4036eb7167d2d27117abe1f0280376377dbaa/MainController.java/clean/trunk/src/de/berlios/koalanotes/controllers/MainController.java |
localUpdate.commit(); | public void saveCurrentSettings() { delegate.saveCurrentSettings(); localUpdate.flush(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3174c2805bbc3341f9872f4461426b51c56c6770/RenderingBean.java/clean/components/ejb/src/ome/ro/ejb/RenderingBean.java | |
String[] dirs = globPattern.getPattern().split(File.separator); | String[] dirs = globPattern.getPattern().split(pathSplitter); | private void getFiles() { for (Iterator iter = patterns.iterator(); iter.hasNext();) { GlobPattern globPattern = (GlobPattern) iter.next(); String[] dirs = globPattern.getPattern().split(File.separator); File root = new File(dirs[0]); int idx = 1; if (glob2Regexp(dirs[0]) != null)... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/6acc52ad20fb231f849a10dff6ce197f6ea9c617/Glob.java/buggy/src/org/jruby/util/Glob.java |
try { getFiles(); } catch (PatternSyntaxException e) { return new String[] {}; } | try { getFiles(); } catch (PatternSyntaxException e) { System.out.println("BAD PATTERN: " + e.getPattern()); return new String[] {}; } | public String[] getNames() { try { getFiles(); } catch (PatternSyntaxException e) { // This can happen if someone does Dir.glob("{") or similiar. return new String[] {}; } ArrayList allMatchedNames = new ArrayList(); for (Iterator iter = patterns.iterator(); iter.hasNext();) { GlobP... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/6acc52ad20fb231f849a10dff6ce197f6ea9c617/Glob.java/buggy/src/org/jruby/util/Glob.java |
public boolean getOnOff() { return onOff; } | boolean getOnOff() { return onOff; } | public boolean getOnOff() { return onOff; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/75759d4628947eccba1f0e97cd7b5035c174f2cc/DrawingCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/canvas/DrawingCanvas.java |
g2D.setColor(roi.getLineColor()); | r = s.getBounds(); g2D.setStroke(dashed); g2D.setColor(alphaColor(roi.getLineColor())); if (roi.getIndex() == indexSelected) { g2D.setStroke(stroke); g2D.setColor(roi.getLineColor()); } | private void paintROICollection(Graphics2D g2D, List l) { Iterator i = l.iterator(); ROIShape roi; Shape s; Rectangle r; magFactor = manager.getCurrentImageAffineTransform().getMagFactor(); while (i.hasNext()) { roi = (ROIShape) i.next(); setShapeBo... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/75759d4628947eccba1f0e97cd7b5035c174f2cc/DrawingCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/canvas/DrawingCanvas.java |
r = s.getBounds(); | private void paintROICollection(Graphics2D g2D, List l) { Iterator i = l.iterator(); ROIShape roi; Shape s; Rectangle r; magFactor = manager.getCurrentImageAffineTransform().getMagFactor(); while (i.hasNext()) { roi = (ROIShape) i.next(); setShapeBo... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/75759d4628947eccba1f0e97cd7b5035c174f2cc/DrawingCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/canvas/DrawingCanvas.java | |
g2D.drawString(roi.getText(), p.x, p.y); | g2D.drawString(roi.getLabel(), p.x, p.y); | private void paintROICollection(Graphics2D g2D, List l) { Iterator i = l.iterator(); ROIShape roi; Shape s; Rectangle r; magFactor = manager.getCurrentImageAffineTransform().getMagFactor(); while (i.hasNext()) { roi = (ROIShape) i.next(); setShapeBo... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/75759d4628947eccba1f0e97cd7b5035c174f2cc/DrawingCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/canvas/DrawingCanvas.java |
if (roi.getIndex() == indexSelected) { | if (roi.getAnnotation() != null && onOff) { | private void paintROICollection(Graphics2D g2D, List l) { Iterator i = l.iterator(); ROIShape roi; Shape s; Rectangle r; magFactor = manager.getCurrentImageAffineTransform().getMagFactor(); while (i.hasNext()) { roi = (ROIShape) i.next(); setShapeBo... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/75759d4628947eccba1f0e97cd7b5035c174f2cc/DrawingCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/canvas/DrawingCanvas.java |
LENGTH); | LENGTH); | private void paintROICollection(Graphics2D g2D, List l) { Iterator i = l.iterator(); ROIShape roi; Shape s; Rectangle r; magFactor = manager.getCurrentImageAffineTransform().getMagFactor(); while (i.hasNext()) { roi = (ROIShape) i.next(); setShapeBo... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/75759d4628947eccba1f0e97cd7b5035c174f2cc/DrawingCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/canvas/DrawingCanvas.java |
private void setShapeBounds(ROIShape roi) { Shape shape = roi.getShape(); Rectangle r = shape.getBounds(); double factor = roi.getAffineTransform().getMagFactor(); int shapeType = roi.getShapeType(); double coeff = magFactor/factor; ROIFactory.setShapeBounds(shap... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/75759d4628947eccba1f0e97cd7b5035c174f2cc/DrawingCanvas.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/canvas/DrawingCanvas.java | ||
public FileSystemXmlApplicationContext(String[] configLocations, boolean refresh, List xmlPreprocessors) throws BeansException { this(configLocations, refresh, null, xmlPreprocessors); | public FileSystemXmlApplicationContext(String configLocation) throws BeansException { this(new String[] {configLocation}, true, null, Collections.EMPTY_LIST); | public FileSystemXmlApplicationContext(String[] configLocations, boolean refresh, List xmlPreprocessors) throws BeansException { this(configLocations, refresh, null, xmlPreprocessors); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/b05052e52d5df78c860e248c9008c7e71be70d95/FileSystemXmlApplicationContext.java/clean/spring/src/java/org/xbean/spring/context/FileSystemXmlApplicationContext.java |
PixelsService service = new PixelsService(); | PixelsService service = new PixelsService(PixelsService.ROOT_DEFAULT); | protected void setUp() throws IOException { // Create set up the base fixture which sets up the database for us baseFixture = new PixbufIOFixture(); pixels = baseFixture.setUp(); // "Our" fixture which creates the planes needed for this test case. PixelsService service ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ae0b01fad17fcacba3ec0999ca1ad645f389b5f9/PixbufCreationUnitTest.java/clean/components/omeio-nio/test/ome/io/nio/itests/PixbufCreationUnitTest.java |
double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; return (int) (a*y+b); | double a = (c-b)/ (double) rangeGraphics; int r = (int) (a*y+b); if (r < c) r = c; if (r > b) r = b; return r; | int convertGraphicsIntoReal(int x) { int b = control.getGlobalMaximum(); int y = x-tW; double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; return (int) (a*y+b); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/4b6a9c2b424c068230039a988c19a9a6fb4cf0c5/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
double a = (double) rangeGraphics/(double) (b-c); | double a = (double) rangeGraphics/(b-c); | int convertRealIntoGraphics(int x) { int b = control.getGlobalMinimum(); int c = control.getGlobalMaximum(); double a = (double) rangeGraphics/(double) (b-c); return (int) (a*(x-c)+tW); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/4b6a9c2b424c068230039a988c19a9a6fb4cf0c5/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
try { Object ret = invoke(iteratorMethod, instance, null); if (ret instanceof Iterator) { return (Iterator) ret; } else if (ret instanceof Enumeration) { return new EnumIterator((Enumeration) ret); } else if (ret instanceof Object[]) { return new ArrayIterator((Object[]) ret); } | Object ret = invoke(iteratorMethod, instance, null); if (ret instanceof Iterator) { return (Iterator) ret; | public Iterator findIterator(Object instance) throws PropertyException { if (iteratorMethod != null) { try { Object ret = invoke(iteratorMethod, instance, null); if (ret instanceof Iterator) { return (Iterator) ret; } else if (ret instanc... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/289617da402a00c35bb091baf41ccd5f8d4042c2/PropertyOperatorCache.java/buggy/webmacro/src/org/webmacro/engine/PropertyOperatorCache.java |
catch (NoSuchMethodException e) { throw new PropertyException("Error in PropertyOperator!", e); | else if (ret instanceof Enumeration) { return new EnumIterator((Enumeration) ret); } else if (ret instanceof Object[]) { return new ArrayIterator((Object[]) ret); | public Iterator findIterator(Object instance) throws PropertyException { if (iteratorMethod != null) { try { Object ret = invoke(iteratorMethod, instance, null); if (ret instanceof Iterator) { return (Iterator) ret; } else if (ret instanc... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/289617da402a00c35bb091baf41ccd5f8d4042c2/PropertyOperatorCache.java/buggy/webmacro/src/org/webmacro/engine/PropertyOperatorCache.java |
throws PropertyException, NoSuchMethodException { | throws PropertyException { | static Object invoke(Method meth, Object instance, Object[] args) throws PropertyException, NoSuchMethodException { try { Object obj = meth.invoke(instance, args); // if the method's return type is void return the VoidMacro // instance, instead of the 'null' we used to return her... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/289617da402a00c35bb091baf41ccd5f8d4042c2/PropertyOperatorCache.java/buggy/webmacro/src/org/webmacro/engine/PropertyOperatorCache.java |
if (!Hibernate.isInitialized(obj)) { throw new IllegalStateException( "If the return object is not initialized then we can't send it."); | if (null != obj) { if (obj instanceof OMEModel) { daoUtils.clean((OMEModel) obj); } else if (obj instanceof Set) { daoUtils.clean((Set) obj); } else if (obj instanceof HashMap) { daoUtils.clean(((Map) obj).keySet()); daoUtils.clean(new HashSet(((Map) obj).values())); } else { String msg = "Instances of " + obj.getClas... | Object clean(Object obj) { if (!Hibernate.isInitialized(obj)) { throw new IllegalStateException( "If the return object is not initialized then we can't send it."); } Set done = new HashSet(); hessianClean(obj, done); return obj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/HierarchyBrowsingImpl.java/clean/components/server/src/org/openmicroscopy/omero/logic/HierarchyBrowsingImpl.java |
Set done = new HashSet(); hessianClean(obj, done); | Object clean(Object obj) { if (!Hibernate.isInitialized(obj)) { throw new IllegalStateException( "If the return object is not initialized then we can't send it."); } Set done = new HashSet(); hessianClean(obj, done); return obj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/HierarchyBrowsingImpl.java/clean/components/server/src/org/openmicroscopy/omero/logic/HierarchyBrowsingImpl.java | |
Set categories = new HashSet(); | public Set findCGCIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size() == 0) { return new HashSet(); } List result = containerDao.findCGCIHierarchies(arg0); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0)... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/HierarchyBrowsingImpl.java/clean/components/server/src/org/openmicroscopy/omero/logic/HierarchyBrowsingImpl.java | |
for (Iterator c = classifications.iterator(); c.hasNext();) { Classification cla = (Classification) c.next(); if (null!=cla.getCategory()){ categories.add(cla.getCategory()); } } if (categories == null || categories.size() < 1) { | if (classifications == null || classifications.size() < 1) { | public Set findCGCIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size() == 0) { return new HashSet(); } List result = containerDao.findCGCIHierarchies(arg0); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0)... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/HierarchyBrowsingImpl.java/clean/components/server/src/org/openmicroscopy/omero/logic/HierarchyBrowsingImpl.java |
Iterator c = categories.iterator(); | Iterator c = classifications.iterator(); | public Set findCGCIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size() == 0) { return new HashSet(); } List result = containerDao.findCGCIHierarchies(arg0); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0)... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9570ef74198a070d72e77c417c9d25244a942de2/HierarchyBrowsingImpl.java/clean/components/server/src/org/openmicroscopy/omero/logic/HierarchyBrowsingImpl.java |
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