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{ Long n = null; if (data instanceof ImageData) { type = ImageData.class; n = ((ImageData) data).getAnnotationCount(); } else if (data instanceof DatasetData) { type = DatasetData.class; n = ((DatasetData) data).getAnnotationCount(); } if (n == null) return false; return (n.longValue() != 0); }
{ Long n = null; if (data instanceof ImageData) { type = ImageData.class; n = ((ImageData) data).getAnnotationCount(); } else if (data instanceof DatasetData) { type = DatasetData.class; n = ((DatasetData) data).getAnnotationCount(); } if (n == null) return false; return (n.longValue() != 0); }
private boolean isObjectAnnotated(DataObject data) { Long n = null; if (data instanceof ImageData) { type = ImageData.class; n = ((ImageData) data).getAnnotationCount(); } else if (data instanceof DatasetData) { type = DatasetData.class; n = ((DatasetData) data).getAnnotationCount(); } if (n =...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorModel.java/clean/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorModel.java
setBorder(BorderFactory.createEmptyBorder(0, 0, 10, 10));
manager.getView().repaint();
void showImages(List images) { removeAll(); setLayout(new BoxLayout(this, BoxLayout.Y_AXIS)); add(Box.createRigidArea(DataManagerUIF.VBOX)); add(componentsPanel); add(Box.createRigidArea(DataManagerUIF.VBOX)); if (images != null && images.size() != 0) { add(bu...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d70386d4b1bd44d70716a6be05a1c87ff487476d/CreateDatasetImagesPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/editors/dataset/CreateDatasetImagesPane.java
menu.add(new JMenuItem(controller.getAction(HiViewer.CLEAR)));
private JMenu createEditMenu() { JMenu menu = new JMenu("Edit"); menu.setMnemonic(KeyEvent.VK_E); menu.add(new JMenuItem(controller.getAction(HiViewer.FIND))); menu.add(new JMenuItem(controller.getAction(HiViewer.CLEAR))); menu.add(new JSeparator(JSeparator.HORIZONTAL)); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64ee7ec527da3cc538fcd8d0a21183719f854676/HiViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerWin.java
menu.setMnemonic(KeyEvent.VK_H);
menu.setMnemonic(KeyEvent.VK_F);
private JMenu createFileMenu() { JMenu menu = new JMenu("File"); menu.setMnemonic(KeyEvent.VK_H); menu.add(new JMenuItem( controller.getAction(HiViewer.SAVE_THUMB))); menu.add(new JSeparator(JSeparator.HORIZONTAL)); menu.add(new JMenuItem( controll...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64ee7ec527da3cc538fcd8d0a21183719f854676/HiViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerWin.java
menu.add(new JSeparator(JSeparator.HORIZONTAL)); menu.add(new JMenuItem(controller.getAction( HiViewer.EXIT_APPLICATION)));
private JMenu createFileMenu() { JMenu menu = new JMenu("File"); menu.setMnemonic(KeyEvent.VK_H); menu.add(new JMenuItem( controller.getAction(HiViewer.SAVE_THUMB))); menu.add(new JSeparator(JSeparator.HORIZONTAL)); menu.add(new JMenuItem( controll...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64ee7ec527da3cc538fcd8d0a21183719f854676/HiViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerWin.java
windowsMenu = new JMenu("Windows");
windowsMenu = new JMenu("Window");
private void createWindowsMenu() { windowsMenu = new JMenu("Windows"); windowsMenu.setMnemonic(KeyEvent.VK_W); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64ee7ec527da3cc538fcd8d0a21183719f854676/HiViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerWin.java
javaObject = ((RubyString) object).getValue();
javaObject = ((RubyString) object).toString();
public static IRubyObject primitive_to_java(IRubyObject recv, IRubyObject object) { if (object instanceof JavaObject) { return object; } IRuby runtime = recv.getRuntime(); Object javaObject; if (object.isNil()) { javaObject = null; } else if (object in...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/Java.java/buggy/src/org/jruby/javasupport/Java.java
BigInteger[] results = getValue().divideAndRemainder(bigIntValue((RubyNumeric) other));
BigInteger otherBig = bigIntValue((RubyNumeric) other); if (otherBig.equals(BigInteger.ZERO)) { throw getRuntime().newZeroDivisionError(); } BigInteger[] results = getValue().divideAndRemainder(otherBig);
public IRubyObject op_div(IRubyObject other) { if (other instanceof RubyFloat) { return RubyFloat.newFloat(getRuntime(), getDoubleValue()).op_div(other); } else if (other instanceof RubyNumeric) { BigInteger[] results = getValue().divideAndRemainder(bigIntValue((RubyNumeric) othe...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1a99d1af5cf0ec0affd4f78b7cf07aa50ed18d98/RubyBignum.java/clean/src/org/jruby/RubyBignum.java
MultilineLabel message = new MultilineLabel(msg);
JTextPane message = UIUtilities.buildTextPane(msg);;
private void buildMessagePanel(String msg, Icon msgIcon) { messagePanel.setLayout(new BoxLayout(messagePanel, BoxLayout.X_AXIS)); messagePanel.setOpaque(false); if (msgIcon != null) { JLabel iconLabel = new JLabel(msgIcon); iconLabel.setAlignmentY(TOP_ALIGNMENT); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/54a6dc1cc81e06c2190546075a6c5a04f18d9bb5/OptionsDialog.java/clean/SRC/org/openmicroscopy/shoola/util/ui/OptionsDialog.java
Set dataObjects = new HashSet(); for (Iterator i = result.iterator(); i.hasNext();) { Object obj = i.next(); if (obj instanceof CategoryGroup) { CategoryGroup cg = (CategoryGroup) obj; dataObjects.add(AdapterUtils.go(cg)); } else if (obj instanceof Category) { Category ca = (Category) obj; dataObjects.add(AdapterUtils....
return AdapterUtils.adaptFoundCGCIHierarchies(result);
public Set findCGCIHierarchies(Set imgIDs) { Set result = proxiedInterface.findCGCIHierarchies(imgIDs); Set dataObjects = new HashSet(); for (Iterator i = result.iterator(); i.hasNext();) { Object obj = i.next(); if (obj instanceof CategoryGroup) { CategoryG...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
return goDatasetAnnotations(result);
return AdapterUtils.adaptFoundDatasetAnnotations(result);
public Map findDatasetAnnotations(Set datasetIDs) { Map result = proxiedInterface.findDatasetAnnotations(datasetIDs); return goDatasetAnnotations(result); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
return goDatasetAnnotations(result);
return AdapterUtils.adaptFoundDatasetAnnotations(result);
public Map findDatasetAnnotationsForExperimenter(Set datasetIDs, int experimenterID) { Map result = proxiedInterface.findDatasetAnnotationsForExperimenter(datasetIDs,experimenterID); return goDatasetAnnotations(result); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
return goImageAnnotations(result);
return AdapterUtils.adaptFoundImageAnnotations(result);
public Map findImageAnnotations(Set imgIDs) { Map result = proxiedInterface.findImageAnnotations(imgIDs); return goImageAnnotations(result); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
return goImageAnnotations(result);
return AdapterUtils.adaptFoundImageAnnotations(result);
public Map findImageAnnotationsForExperimenter(Set imgIDs, int experimenterID) { Map result = proxiedInterface.findImageAnnotationsForExperimenter(imgIDs,experimenterID); return goImageAnnotations(result); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
Set dataObjects = new HashSet(); for (Iterator i = result.iterator(); i.hasNext();) { Object obj = i.next(); if (obj instanceof Project) { Project prj = (Project) obj; dataObjects.add(AdapterUtils.go(prj)); } else if (obj instanceof Dataset) { Dataset ds = (Dataset) obj; dataObjects.add(AdapterUtils.go(ds)); } else if ...
return AdapterUtils.adaptFoundPDIHierarchies(result);
public Set findPDIHierarchies(Set imgIDs) { Set result = proxiedInterface.findPDIHierarchies(imgIDs); Set dataObjects = new HashSet(); for (Iterator i = result.iterator(); i.hasNext();) { Object obj = i.next(); if (obj instanceof Project) { Project prj = (Pr...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
if (rootNodeType.equals(CategoryGroup.class)){ return AdapterUtils.go((CategoryGroup) result); } else if (rootNodeType.equals(Category.class)){ return AdapterUtils.go((Category) result); } else { throw new IllegalArgumentException("Method only takes CategoryGroup and Category as argument."); }
return AdapterUtils.adaptLoadedCGCIHierarchy(rootNodeType,result);
public DataObject loadCGCIHierarchy(Class rootNodeType, int rootNodeID) { Object result = proxiedInterface.loadCGCIHierarchy(rootNodeType, rootNodeID); if (rootNodeType.equals(CategoryGroup.class)){ return AdapterUtils.go((CategoryGroup) result); } else if (rootNodeType.equals(Ca...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
if (rootNodeType.equals(Project.class)){ return AdapterUtils.go((Project) result); } else if (rootNodeType.equals(Dataset.class)){ return AdapterUtils.go((Dataset) result); } else { throw new IllegalArgumentException("Method only takes Project and Dataset as argument."); }
return AdapterUtils.adaptLoadedPDIHierarchy(rootNodeType,result);
public DataObject loadPDIHierarchy(Class rootNodeType, int rootNodeID) { Object result = proxiedInterface.loadPDIHierarchy(rootNodeType, rootNodeID); if (rootNodeType.equals(Project.class)){ return AdapterUtils.go((Project) result); } else if (rootNodeType.equals(Dataset.class)){ ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0dcf955580c9394058b7f3452a6050bc8c49e5a0/HierarchyBrowsingAdapter.java/buggy/components/shoola-adapter/src/org/openmicroscopy/omero/shoolaadapter/HierarchyBrowsingAdapter.java
super.repaint();
repaint();
void updateOutputStart(int y) { yStartOutput1 = y; yStartOutput2 = y-triangleW; yStartOutput3 = y+triangleW; startPt.setLocation(startPt.getX(), (double) y); super.repaint(); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6a28b54c142c80cf786f76c45b6be256d92fd0bb/PlaneSlicingPanel.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/PlaneSlicingPanel.java
super.repaint();
repaint();
void updateOutputEnd(int y) { yEndOutput1 = y; yEndOutput2 = y-triangleW; yEndOutput3 = y+triangleW; endPt.setLocation(endPt.getX(), (double) y); super.repaint(); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6a28b54c142c80cf786f76c45b6be256d92fd0bb/PlaneSlicingPanel.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/PlaneSlicingPanel.java
return JavaUtil.convertJavaToRuby(ruby, bean.bean, bean.type); }
return JavaUtil.convertJavaToRuby(ruby, bean.bean, bean.type); }
public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { return JavaUtil.convertJavaToRuby(ruby, bean.bean, bean.type); }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/DeclaredBeanGetMethod.java/clean/org/jruby/javasupport/bsf/DeclaredBeanGetMethod.java
public Quantization_8_16_bit(QuantumDef qd, PixelsType type)
public Quantization_8_16_bit(QuantumDef qd, PixelsType type, IPixels iPixels)
public Quantization_8_16_bit(QuantumDef qd, PixelsType type) { super(qd, type); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/Quantization_8_16_bit.java/buggy/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java
super(qd, type);
super(qd, type, iPixels);
public Quantization_8_16_bit(QuantumDef qd, PixelsType type) { super(qd, type); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/Quantization_8_16_bit.java/buggy/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java
ClassLoader beanClassLoader = getBeanDefinitionReader().getBeanClassLoader(); if (beanClassLoader != null) { try { return beanClassLoader.loadClass(name); } catch (ClassNotFoundException e) { } }
protected Class loadClass(String name) throws ClassNotFoundException { ClassLoader contextClassLoader = Thread.currentThread().getContextClassLoader(); if (contextClassLoader != null) { try { return contextClassLoader.loadClass(name); } catch (ClassNotFo...
52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/0f765a7bedde7f59bcd721b233ad6b3b7425a5cb/XBeanXmlBeanDefinitionParser.java/buggy/spring/src/java/org/xbean/spring/context/impl/XBeanXmlBeanDefinitionParser.java
String[][] stats = new String[2][8]; for (int i = 0; i < 8; i++) {
String[][] stats = new String[2][9]; for (int i = 0; i < 9; i++) {
public String[][] getROIStats() { String[][] stats = new String[2][8]; for (int i = 0; i < 8; i++) { stats[0][i] = ""+i; stats[1][i] = ""+2*i; } return stats; }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/74972fca5ec76d6623e0be08ab05d77ca21eddc1/ROIAgtCtrl.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/ROIAgtCtrl.java
private UnregisterServiceManager(ServiceManager serviceManager, StopStrategy stopStrategy, Throwable[] futureThrowable) {
private UnregisterServiceManager(ServiceManager serviceManager, StopStrategy stopStrategy) {
private UnregisterServiceManager(ServiceManager serviceManager, StopStrategy stopStrategy, Throwable[] futureThrowable) { this.serviceManager = serviceManager; this.stopStrategy = stopStrategy; this.futureThrowable = futureThrowable; }
52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/e4a9cb81c5b1bfeb724fd5cb9f7325ab7867ae4b/StandardKernel.java/buggy/kernel/src/java/org/gbean/kernel/standard/StandardKernel.java
this.futureThrowable = futureThrowable;
private UnregisterServiceManager(ServiceManager serviceManager, StopStrategy stopStrategy, Throwable[] futureThrowable) { this.serviceManager = serviceManager; this.stopStrategy = stopStrategy; this.futureThrowable = futureThrowable; }
52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/e4a9cb81c5b1bfeb724fd5cb9f7325ab7867ae4b/StandardKernel.java/buggy/kernel/src/java/org/gbean/kernel/standard/StandardKernel.java
synchronized (futureThrowable) { futureThrowable[0] = e;
synchronized (this) { throwable = e;
public Object call() { try { serviceManager.destroy(stopStrategy); synchronized (serviceManagers) { serviceManagers.remove(serviceManager.getServiceName()); } return null; } catch (Throwable e) { ...
52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/e4a9cb81c5b1bfeb724fd5cb9f7325ab7867ae4b/StandardKernel.java/buggy/kernel/src/java/org/gbean/kernel/standard/StandardKernel.java
if(attributeName == null || elementName == null) { return; }
private void recalibrateScale() { if(currentScaleName.equals(Scale.LINEAR_SCALE)) { currentScale = new LinearScale(gradient.getMin(),gradient.getMax()); } else if(currentScaleName.equals(Scale.LOGARITHMIC_SCALE)) { currentScale = new LogarithmicScale(gradi...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb13c9484826e4d7b149c8ce9e1aa9a3fc55a6d2/HeatMapDispatcher.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/heatmap/HeatMapDispatcher.java
browserModel.setLayoutMethod(new GraphLayoutMethod(stats));
if(stats != null && stats.length > 0) { browserModel.setLayoutMethod(new GraphLayoutMethod(stats)); }
public void showGraphView() { if(attributeName != null && elementName != null) { BrowserModel browserModel = model.getInfoSource(); List thumbList = browserModel.getThumbnails(); Thumbnail[] thumbnails = new Thumbnail[thumbList.size()]; thumbList.toArray(...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb13c9484826e4d7b149c8ce9e1aa9a3fc55a6d2/HeatMapDispatcher.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/heatmap/HeatMapDispatcher.java
if (state.runtime.getClass("Module").getConstant(iVisited.getName(), false) != null) { definition = "constant";
try { state.runtime.getClass("Module").getConstant(iVisited.getName()); } catch (RaiseException re) { if (re.getException().isKindOf(state.runtime.getClass("NameError"))) { return null; } throw re;
public Instruction visitConstNode(ConstNode iVisited) { if (state.runtime.getClass("Module").getConstant(iVisited.getName(), false) != null) { definition = "constant"; } return null; }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a1b8fc1d456e3d5c6e01579b88773383068aa85c/DefinedVisitor.java/buggy/src/org/jruby/evaluator/DefinedVisitor.java
definition = "constant";
public Instruction visitConstNode(ConstNode iVisited) { if (state.runtime.getClass("Module").getConstant(iVisited.getName(), false) != null) { definition = "constant"; } return null; }
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a1b8fc1d456e3d5c6e01579b88773383068aa85c/DefinedVisitor.java/buggy/src/org/jruby/evaluator/DefinedVisitor.java
stop();
final public synchronized void destroy() { _wm.destroy(); _wm = null; _started = false; super.destroy(); }
52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/54ae4f480a1f98023740a9a059aa0c18066419b3/WMServlet.java/buggy/webmacro/src/org/webmacro/servlet/WMServlet.java
newElement = new JMenuItem( controller.getAction(TreeViewerControl.CREATE_OBJECT));
TreeViewerAction a = controller.getAction(TreeViewerControl.CREATE_OBJECT); newElement = new JMenuItem(a); newElement.setText(a.getActionName());
private void initComponents() { newElement = new JMenuItem( controller.getAction(TreeViewerControl.CREATE_OBJECT)); initMenuItem(newElement); copyElement = new JMenuItem( controller.getAction(TreeViewerControl.COPY_OBJECT)); initMenuItem(newElement); ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/ManagePopupMenu.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/ManagePopupMenu.java
public DisplayedNote(NoteTreeNode treeNode, Note note) { this.treeNode = treeNode;
public DisplayedNote(DisplayedNote parent, Note note) {
public DisplayedNote(NoteTreeNode treeNode, Note note) { this.treeNode = treeNode; this.note = note; }
57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/a21e67d29e81a4038ecb2d55530f57396df4085c/DisplayedNote.java/clean/trunk/src/de/berlios/koalanotes/display/DisplayedNote.java
this.treeNode = new NoteTreeNode(parent.treeNode, this); for (Note n : note.getChildren()) { new DisplayedNote(this, n); }
public DisplayedNote(NoteTreeNode treeNode, Note note) { this.treeNode = treeNode; this.note = note; }
57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/a21e67d29e81a4038ecb2d55530f57396df4085c/DisplayedNote.java/clean/trunk/src/de/berlios/koalanotes/display/DisplayedNote.java
if (constructorMetadata.getProperties().containsKey("always-use")) { return constructorMetadata; } List constructorArgNames = getConstructorArgNames(constructorMetadata); if (constructorArgNames != null && propertyNames.containsAll(constructorArgNames)) {
if (isUsableConstructor(constructorMetadata, propertyNames)) {
private ConstructorMetadata getConstructor(RootBeanDefinition rootBeanDefinition) { Class beanType = rootBeanDefinition.getBeanClass(); // try to get the class metadata ClassMetadata classMetadata = metadataManager.getClassMetadata(beanType); // get a set containing the names of the defi...
52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/NamedConstructorArgs.java/buggy/kernel/src/java/org/gbean/spring/NamedConstructorArgs.java
public void visitBeanDefinition(BeanDefinition beanDefinition) throws BeansException { super.visitBeanDefinition(beanDefinition);
public void visitBeanDefinition(BeanDefinition beanDefinition, Object data) throws BeansException { super.visitBeanDefinition(beanDefinition, data);
public void visitBeanDefinition(BeanDefinition beanDefinition) throws BeansException { super.visitBeanDefinition(beanDefinition); if (!(beanDefinition instanceof RootBeanDefinition)) { return; } RootBeanDefinition rootBeanDefinit...
52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/NamedConstructorArgs.java/buggy/kernel/src/java/org/gbean/spring/NamedConstructorArgs.java
parametersToConstructorArgs(rootBeanDefinition);
processParameters(rootBeanDefinition);
public void visitBeanDefinition(BeanDefinition beanDefinition) throws BeansException { super.visitBeanDefinition(beanDefinition); if (!(beanDefinition instanceof RootBeanDefinition)) { return; } RootBeanDefinition rootBeanDefinit...
52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/NamedConstructorArgs.java/buggy/kernel/src/java/org/gbean/spring/NamedConstructorArgs.java
public Object get(final String query) throws NotFoundException { TimedReference r; try { r = (TimedReference) _cache.get(query); } catch (NullPointerException e) { throw new NotFoundException(this + " is not initialized", e); } Object o = null; if (r != null) { ...
52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/00af97f85c3f1eff849b9f47def81ab18c9841b1/CachingProvider.java/clean/webmacro/src/org/webmacro/resource/CachingProvider.java
r = (TimedReference) _cache.get(query);
public Object get(final String query) throws NotFoundException { TimedReference r; try { r = (TimedReference) _cache.get(query); } catch (NullPointerException e) { throw new NotFoundException(this + " is not initialized", e); } Object o = null; if (r != null) { ...
52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/00af97f85c3f1eff849b9f47def81ab18c9841b1/CachingProvider.java/clean/webmacro/src/org/webmacro/resource/CachingProvider.java
URL u = new URL(evt.getName());
String name = evt.getName(); URL u; if (name.indexOf(":") < 3) { u = new URL("file",null,-1,name); } else { u = new URL(name); }
final public void resourceRequest(RequestResourceEvent evt) throws NotFoundException { try { URL u = new URL(evt.getName()); Reader in = new InputStreamReader(u.openStream()); char buf[] = new char[512]; StringWriter sw = new StringWriter(); int num; while...
52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/67b2f926e6db2280edd1dbb8f53414247442c007/UrlProvider.java/buggy/webmacro/src/org/webmacro/resource/UrlProvider.java
private static QuantumStrategy getQuantization(QuantumDef qd, PixelsType type)
private static QuantumStrategy getQuantization(QuantumDef qd, PixelsType type, IPixels iPixels)
private static QuantumStrategy getQuantization(QuantumDef qd, PixelsType type) { return new Quantization_8_16_bit(qd, type); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/QuantumFactory.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumFactory.java
return new Quantization_8_16_bit(qd, type);
return new Quantization_8_16_bit(qd, type, iPixels);
private static QuantumStrategy getQuantization(QuantumDef qd, PixelsType type) { return new Quantization_8_16_bit(qd, type); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/QuantumFactory.java/buggy/components/rendering/src/omeis/providers/re/quantum/QuantumFactory.java
public Node literal_concat(ISourcePosition position, Node head, Object tail) { ListNode list;
public Node literal_concat(ISourcePosition position, Node head, Node tail) {
public Node literal_concat(ISourcePosition position, Node head, Object tail) { ListNode list; if (head == null) { list = new DStrNode(position); } else if (head instanceof EvStrNode) { list = new DStrNode(position).add(head); } else { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e9bf476d31a1adc390bf346977ba9fb6e8419f5b/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java
list = new DStrNode(position); } else if (head instanceof EvStrNode) { list = new DStrNode(position).add(head); } else { list = (ListNode) head;
assert tail == null || tail instanceof Node; return (Node) tail;
public Node literal_concat(ISourcePosition position, Node head, Object tail) { ListNode list; if (head == null) { list = new DStrNode(position); } else if (head instanceof EvStrNode) { list = new DStrNode(position).add(head); } else { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e9bf476d31a1adc390bf346977ba9fb6e8419f5b/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java
if (tail instanceof String) { tail = new StrNode(position, (String)tail);
if (tail == null) { return head;
public Node literal_concat(ISourcePosition position, Node head, Object tail) { ListNode list; if (head == null) { list = new DStrNode(position); } else if (head instanceof EvStrNode) { list = new DStrNode(position).add(head); } else { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e9bf476d31a1adc390bf346977ba9fb6e8419f5b/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java
list.add((Node)tail);
public Node literal_concat(ISourcePosition position, Node head, Object tail) { ListNode list; if (head == null) { list = new DStrNode(position); } else if (head instanceof EvStrNode) { list = new DStrNode(position).add(head); } else { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e9bf476d31a1adc390bf346977ba9fb6e8419f5b/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java
return list;
if (head instanceof EvStrNode) { head = new DStrNode(position).add(head); } if (tail instanceof StrNode) { if (head instanceof StrNode) { head = new StrNode(union(head, (Node) tail), ((StrNode) head).getValue() + ((StrNode) tail).getValue()); } else { ((ListNode) head).add((Node) tail); } } else if (tail instanceof DS...
public Node literal_concat(ISourcePosition position, Node head, Object tail) { ListNode list; if (head == null) { list = new DStrNode(position); } else if (head instanceof EvStrNode) { list = new DStrNode(position).add(head); } else { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e9bf476d31a1adc390bf346977ba9fb6e8419f5b/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java
setBounds(0,0,measuredWidth,titleBar.getHeight()+iconBar.getHeight());
public BPalette(BrowserTopModel parent, String name) { backingModel = parent; final BPalette refCopy = this; this.paletteName = name; titleBar = new TitleBar(name); iconBar = new IconBar(measuredWidth); addChild(titleBar); titleBar.addChild(iconBar); // ch...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dfa9ae97d8f563906ba2ca4ea00d949bd0915064/BPalette.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BPalette.java
public BIcon(String text, boolean sticky)
public BIcon(Image imageIcon, String tooltipText, boolean sticky)
public BIcon(String text, boolean sticky) { this.sticky = sticky; init(); presentationNode = new PText(text); // TODO set font addChild(presentationNode); placeNode(presentationNode); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/BIcon.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BIcon.java
presentationNode = new PText(text);
presentationNode = new PImage(imageIcon,true);
public BIcon(String text, boolean sticky) { this.sticky = sticky; init(); presentationNode = new PText(text); // TODO set font addChild(presentationNode); placeNode(presentationNode); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/BIcon.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BIcon.java
this.tooltipText = tooltipText;
public BIcon(String text, boolean sticky) { this.sticky = sticky; init(); presentationNode = new PText(text); // TODO set font addChild(presentationNode); placeNode(presentationNode); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9ad2d2709e2cdefc9a414f2e51f6a883a2403c7a/BIcon.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BIcon.java
RubyArray backtrace = (RubyArray) excp.callMethod(tc, "backtrace");
IRubyObject backtrace = excp.callMethod(tc, "backtrace");
public void printError(RubyException excp) { if (excp == null || excp.isNil()) { return; } ThreadContext tc = getCurrentContext(); RubyArray backtrace = (RubyArray) excp.callMethod(tc, "backtrace"); PrintStream errorStream = getErrorStream(); if (backtrace.isNil()) { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/Ruby.java/buggy/src/org/jruby/Ruby.java
if (backtrace.isNil()) {
if (backtrace.isNil() || !(backtrace instanceof RubyArray)) {
public void printError(RubyException excp) { if (excp == null || excp.isNil()) { return; } ThreadContext tc = getCurrentContext(); RubyArray backtrace = (RubyArray) excp.callMethod(tc, "backtrace"); PrintStream errorStream = getErrorStream(); if (backtrace.isNil()) { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/Ruby.java/buggy/src/org/jruby/Ruby.java
} else if (backtrace.getLength() == 0) {
} else if (((RubyArray) backtrace).getLength() == 0) {
public void printError(RubyException excp) { if (excp == null || excp.isNil()) { return; } ThreadContext tc = getCurrentContext(); RubyArray backtrace = (RubyArray) excp.callMethod(tc, "backtrace"); PrintStream errorStream = getErrorStream(); if (backtrace.isNil()) { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/Ruby.java/buggy/src/org/jruby/Ruby.java
IRubyObject mesg = backtrace.first(IRubyObject.NULL_ARRAY);
IRubyObject mesg = ((RubyArray) backtrace).first(IRubyObject.NULL_ARRAY);
public void printError(RubyException excp) { if (excp == null || excp.isNil()) { return; } ThreadContext tc = getCurrentContext(); RubyArray backtrace = (RubyArray) excp.callMethod(tc, "backtrace"); PrintStream errorStream = getErrorStream(); if (backtrace.isNil()) { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/Ruby.java/buggy/src/org/jruby/Ruby.java
if (!backtrace.isNil()) { excp.printBacktrace(errorStream); }
excp.printBacktrace(errorStream);
public void printError(RubyException excp) { if (excp == null || excp.isNil()) { return; } ThreadContext tc = getCurrentContext(); RubyArray backtrace = (RubyArray) excp.callMethod(tc, "backtrace"); PrintStream errorStream = getErrorStream(); if (backtrace.isNil()) { ...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/Ruby.java/buggy/src/org/jruby/Ruby.java
}
} else if (target == null && src == view.refresh) control.refresh(DataManagerCtrl.CLASSIFIER);
public void actionPerformed(ActionEvent e) { Object src = e.getSource(); if (target != null) { if (src == view.properties) control.showProperties(target); else if (src == view.view && target instanceof ImageSummary) control.viewImage((...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/059eba4bfbe6afc9941db02e314b78f1bd9c2d2e/ClassifierPopupMenuMng.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/ClassifierPopupMenuMng.java
JViewport currentView = this.getViewport();
JViewport currentView = getViewport();
void zoomImage() { if (model.getRenderedImage() == null) return; model.createDisplayedImage(); BufferedImage img = model.getDisplayedImage(); setComponentsSize(img.getWidth(), img.getHeight()); JViewport currentView = this.getViewport(); int h = img.getHeight(); i...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/BrowserUI.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserUI.java
model.getParentModel().addPropertyChangeListener( TreeViewer.THUMBNAIL_LOADED_PROPERTY, controller);
void initialize() { controller.initialize(view); model.getParentModel().addPropertyChangeListener( TreeViewer.THUMBNAIL_LOADED_PROPERTY, controller); view.initialize(controller, model); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/ClassifierComponent.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/clsf/ClassifierComponent.java
return "LogicalChannel"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId);
return "LogicalChannel"+(attributeId==null ? ":Hash_"+this.hashCode() : ":Id_"+attributeId);
public String toString(){ return "LogicalChannel"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/LogicalChannel.java/buggy/components/common/src/ome/model/LogicalChannel.java
if (w-dw > 0)
if (w-dw>0)
private void setTBSize(int w) { Dimension d = toolBar.getSize(); int dw = d.width; if (w-dw > 0) toolBar.add(Box.createRigidArea(new Dimension(w-d.width, 1))); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/020251919a9bc041ddec075006ba48f2bcfddd48/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java
DataObject object;
Object object;
public void visit(ImageNode node) { long id = ((ImageData) node.getHierarchyObject()).getId(); Iterator i = nodes.iterator(); DataObject object; while (i.hasNext()) { object = (DataObject) i.next(); if (object instanceof ImageData) { if (object.getId() == id) ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3b273af3a5320ab0a054540f14a3c299ff01de69/DataSaveVisitor.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/DataSaveVisitor.java
object = (DataObject) i.next();
object = i.next();
public void visit(ImageNode node) { long id = ((ImageData) node.getHierarchyObject()).getId(); Iterator i = nodes.iterator(); DataObject object; while (i.hasNext()) { object = (DataObject) i.next(); if (object instanceof ImageData) { if (object.getId() == id) ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3b273af3a5320ab0a054540f14a3c299ff01de69/DataSaveVisitor.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/DataSaveVisitor.java
if (object.getId() == id) {
if (((ImageData) object).getId() == id) {
public void visit(ImageNode node) { long id = ((ImageData) node.getHierarchyObject()).getId(); Iterator i = nodes.iterator(); DataObject object; while (i.hasNext()) { object = (DataObject) i.next(); if (object instanceof ImageData) { if (object.getId() == id) ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3b273af3a5320ab0a054540f14a3c299ff01de69/DataSaveVisitor.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/DataSaveVisitor.java
node.repaint();
public void visit(ImageNode node) { long id = ((ImageData) node.getHierarchyObject()).getId(); Iterator i = nodes.iterator(); DataObject object; while (i.hasNext()) { object = (DataObject) i.next(); if (object instanceof ImageData) { if (object.getId() == id) ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3b273af3a5320ab0a054540f14a3c299ff01de69/DataSaveVisitor.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/DataSaveVisitor.java
tree.setShowsRootHandles(true);
private void initComponents() { sorter = new ViewerSorter(); tree = new TreeCheck("", null); tree.setRootVisible(false); tree.addPropertyChangeListener(TreeCheck.NODE_SELECTED_PROPERTY, controller); }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3b273af3a5320ab0a054540f14a3c299ff01de69/ClassifierUI.java/clean/SRC/org/openmicroscopy/shoola/agents/util/classifier/view/ClassifierUI.java
if (branchCoverageRate != null) { getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate); }
public void execute() throws BuildException { if (branchCoverageRate != null) { getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate); } if (dataFile != null) { getJava().createArg().setValue("--datafile"); getJava().createArg().setValue(dataFile); } Iterator i =...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/b5fae504c12a9486e23c38b8e2fb563abfcdacb8/CheckTask.java/buggy/cobertura/src/net/sourceforge/cobertura/ant/CheckTask.java
Iterator i = regexes.iterator(); while (i.hasNext())
if (branchCoverageRate != null)
public void execute() throws BuildException { if (branchCoverageRate != null) { getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate); } if (dataFile != null) { getJava().createArg().setValue("--datafile"); getJava().createArg().setValue(dataFile); } Iterator i =...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/b5fae504c12a9486e23c38b8e2fb563abfcdacb8/CheckTask.java/buggy/cobertura/src/net/sourceforge/cobertura/ant/CheckTask.java
getJava().createArg().setValue("--ignore"); getJava().createArg().setValue(i.next().toString());
getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate);
public void execute() throws BuildException { if (branchCoverageRate != null) { getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate); } if (dataFile != null) { getJava().createArg().setValue("--datafile"); getJava().createArg().setValue(dataFile); } Iterator i =...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/b5fae504c12a9486e23c38b8e2fb563abfcdacb8/CheckTask.java/buggy/cobertura/src/net/sourceforge/cobertura/ant/CheckTask.java
if (getJava().executeJava() != 0)
if (totalBranchCoverageRate != null)
public void execute() throws BuildException { if (branchCoverageRate != null) { getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate); } if (dataFile != null) { getJava().createArg().setValue("--datafile"); getJava().createArg().setValue(dataFile); } Iterator i =...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/b5fae504c12a9486e23c38b8e2fb563abfcdacb8/CheckTask.java/buggy/cobertura/src/net/sourceforge/cobertura/ant/CheckTask.java
throw new BuildException();
getJava().createArg().setValue("--totalbranch"); getJava().createArg().setValue(totalBranchCoverageRate);
public void execute() throws BuildException { if (branchCoverageRate != null) { getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate); } if (dataFile != null) { getJava().createArg().setValue("--datafile"); getJava().createArg().setValue(dataFile); } Iterator i =...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/b5fae504c12a9486e23c38b8e2fb563abfcdacb8/CheckTask.java/buggy/cobertura/src/net/sourceforge/cobertura/ant/CheckTask.java
if (totalLineCoverageRate != null) { getJava().createArg().setValue("--totalline"); getJava().createArg().setValue(totalLineCoverageRate); } Iterator iter = regexes.iterator(); while (iter.hasNext()) { getJava().createArg().setValue("--regex"); getJava().createArg().setValue(iter.next().toString()); } int returnCode...
public void execute() throws BuildException { if (branchCoverageRate != null) { getJava().createArg().setValue("--branch"); getJava().createArg().setValue(branchCoverageRate); } if (dataFile != null) { getJava().createArg().setValue("--datafile"); getJava().createArg().setValue(dataFile); } Iterator i =...
50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/b5fae504c12a9486e23c38b8e2fb563abfcdacb8/CheckTask.java/buggy/cobertura/src/net/sourceforge/cobertura/ant/CheckTask.java
getRuby().getRubyFrame().setArgs(new ShiftableList(args));
getRuby().getRubyFrame().setArgs(new RubyPointer(args));
public RubyObject call0(RubyObject recv, RubyId id, RubyObject[] args, Node body, boolean noSuper) { // ... getRuby().getRubyFrame().push(); // HACK +++ getRuby().getIter().push(RubyIter.ITER_NOT); // HACK --- getRuby().getRubyFrame().setLast...
50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/59743974f1f8d5a50153b05647dac2d75d510976/RubyModule.java/buggy/org/jruby/RubyModule.java
public double getMax() { return max; }
public double getMax() { return max; }
public double getMax() { return max; }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c3acf0375531681576d4a65f174981535a8919ae/ROIPlaneStats.java/buggy/SRC/org/openmicroscopy/shoola/env/rnd/roi/ROIPlaneStats.java
public double getMean() { return mean; }
public double getMean() { return mean; }
public double getMean() { return mean; }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c3acf0375531681576d4a65f174981535a8919ae/ROIPlaneStats.java/buggy/SRC/org/openmicroscopy/shoola/env/rnd/roi/ROIPlaneStats.java
public double getMin() { return min; }
public double getMin() { return min; }
public double getMin() { return min; }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c3acf0375531681576d4a65f174981535a8919ae/ROIPlaneStats.java/buggy/SRC/org/openmicroscopy/shoola/env/rnd/roi/ROIPlaneStats.java
public double getStandardDeviation() { return standardDeviation; }
public double getStandardDeviation() { return standardDeviation; }
public double getStandardDeviation() { return standardDeviation; }
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c3acf0375531681576d4a65f174981535a8919ae/ROIPlaneStats.java/buggy/SRC/org/openmicroscopy/shoola/env/rnd/roi/ROIPlaneStats.java
listModel.addElement(owners[i]+" ("+df.format(date)+")");
listModel.addElement(owners[i]+" ("+df.format(date)+")");
private void formatUsersList(String[] owners) { // remove all users from list before adding new listModel.removeAllElements(); // add each user to list Timestamp date; DateFormat df = DateFormat.getDateInstance(); AnnotationData data; List list; for...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c4a5cadc1b56f30311b66cf2fbcf6e3ad950328a/AnnotationPaneUI.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/annotator/AnnotationPaneUI.java
if (userIndex != -1) annotatedByList.setSelectedIndex(userIndex);
void showAnnotations() { deleteBox.setSelected(false); ExperimenterData userDetails = model.getUserDetails(); if (userDetails == null) return; Map annotations = model.getAnnotations(); String[] owners = new String[annotations.size()]; Iterator i = annotations.keySet().it...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c4a5cadc1b56f30311b66cf2fbcf6e3ad950328a/AnnotationPaneUI.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/annotator/AnnotationPaneUI.java
annotatedByList.clearSelection();
if (userIndex != -1) annotatedByList.setSelectedIndex(userIndex);
void showAnnotations() { deleteBox.setSelected(false); ExperimenterData userDetails = model.getUserDetails(); if (userDetails == null) return; Map annotations = model.getAnnotations(); String[] owners = new String[annotations.size()]; Iterator i = annotations.keySet().it...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c4a5cadc1b56f30311b66cf2fbcf6e3ad950328a/AnnotationPaneUI.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/annotator/AnnotationPaneUI.java
"object ID: "+o.getId());
"object ID: "+o.getId());
IObject findIObject(IObject o) throws DSOutOfServiceException, DSAccessException { try { IQuery service = getIQueryService(); return service.find(o.getClass(), o.getId().longValue()); } catch (Exception e) { handleException(e, "Cannot retrieve the requested ob...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/OMEROGateway.java/clean/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java
"parent ID: "+parent.getId()+" and child ID: "+child.getId());
"parent ID: "+parent.getId()+" and child " + "ID: "+child.getId());
IObject findLink(IObject parent, IObject child) throws DSOutOfServiceException, DSAccessException { try { String table = getTableForLink(parent.getClass()); if (table == null) return null; String sql = "select link from "+table+" as link where " + "l...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/OMEROGateway.java/clean/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java
"parent ID: "+parent.getId());
"parent ID: "+parent.getId());
List findLinks(IObject parent, List children) throws DSOutOfServiceException, DSAccessException { try { String table = getTableForLink(parent.getClass()); if (table == null) return null; String sql = "select link from "+table+" as link where " + "...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/OMEROGateway.java/clean/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java
e.printStackTrace();
private ExperimenterData getUserDetails(String name) throws DSOutOfServiceException { try { IPojos service = getIPojosService(); Set set = new HashSet(1); set.add(name); Map m = PojoMapper.asDataObjects(service.getUserDetails(set, (new...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/OMEROGateway.java/clean/SRC/org/openmicroscopy/shoola/env/data/OMEROGateway.java
int delay = 60000; int period = 30000;
int delay = 60000; int period = 30000;
private void checkRoomsForTimeout() { int delay = 60000; // delay for 5 sec. int period = 30000; // repeat every sec. Timer timer = new Timer(); timer.scheduleAtFixedRate(new TimerTask() { public void run() { for (ChatRoom chatRoom : getChatContainer().getSta...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/00fab4f4f794528a2db5b65568d6efec6e2e119d/ChatManager.java/buggy/src/java/org/jivesoftware/spark/ChatManager.java
List logs = CurrentDetails.getCreationEvent().collectFromLogs(null);
List logs = CurrentDetails.getCreationEvent().collectLogs(null);
public void testSaveSimpleObject() throws Exception { Pixels p = ObjectFactory.createPixelGraph(null); p = (Pixels) iUpdate.saveAndReturnObject(p); flush(); List logs = CurrentDetails.getCreationEvent().collectFromLogs(null); assertTrue(logs.size() > 0); Pixels check = ...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/UpdateTest.java/buggy/components/server/test/ome/server/itests/update/UpdateTest.java
KeyStroke appleStroke = KeyStroke.getKeyStroke(Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(), 0); String appleString = org.jivesoftware.spark.util.StringUtils.keyStroke2String(appleStroke); this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke(appleString + "w"), "appleStroke"); this....
private void addKeyNavigation() { KeyStroke leftStroke = KeyStroke.getKeyStroke(KeyEvent.VK_LEFT, 0); String leftStrokeString = org.jivesoftware.spark.util.StringUtils.keyStroke2String(leftStroke); // Handle Left Arrow this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.get...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
if (index == -1) { return; }
private void checkForStaleRooms() { int delay = 1000; // delay for 1 minute int period = 60000; // repeat every 30 seconds. Timer timer = new Timer(); timer.scheduleAtFixedRate(new TimerTask() { public void run() { for (ChatRoom chatRoom : getStaleChatRooms()...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } }
ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { closeTab(chatRoom);
public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { ...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
}
public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { ...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms);
ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } }
public void actionPerformed(ActionEvent e) { for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms); } }
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
((ChatRoomListener)iter.next()).userHasLeft(room, userid);
((ChatRoomListener)iter.next()).userHasJoined(room, userid);
public void run() { final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid); } }
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setT...
public void run() { try { boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flash...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel(...
final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid);
public void run() { try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String ap...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount();
boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame);
public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); ...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex);
Log.error("Issue in ChatRooms with tab location.", ex);
public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); ...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
SparkManager.getAlertManager().stopFlashing(chatFrame);
public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); ...
52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d657ce06cb211de7a00e47df72ad0f160ca4ee/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java
} if (s.length() > 255) { UserNotifier un = TreeViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Editor", "The name is too long. Cannot be more " + "than 255 characters long."); doBasic.resetName(); return;
void finish() { String s = doBasic.getNameText(); if (s == null || s.length() == 0) { doBasic.resetNameArea(); handleNameAreaRemove(0); return; } switch (model.getEditorType()) { case Editor.CREATE_EDITOR: controller.createObj...
54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/39bb6f0c93c9752d3daacd9753b8402e6d393a78/EditorUI.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/editors/EditorUI.java
if (c == '$') {
if ((c == '$') && !in.isEscaped()) {
static public Object parseQuotedString(ParseTool in) throws ParseException, IOException { int quoteChar = in.getChar(); boolean isMacro = false; if ((quoteChar != '\'') && (quoteChar != '\"')) { return null; // undefined quote char } StringBuffer str = new StringBuffer(96); ...
52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/edc6be3e13cffe24c6d6917bb90f6d317cf74dfb/WMParser.java/clean/webmacro/src/org/webmacro/engine/WMParser.java