rem stringlengths 0 477k | add stringlengths 0 313k | context stringlengths 6 599k | meta stringlengths 141 403 |
|---|---|---|---|
{ | try { errorIfNullRenderingDef(); | public void saveCurrentSettings() { rwl.writeLock().lock(); { // TODO vararg save method. pixMetaSrv.saveRndSettings(rendDefObj); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void saveCurrentSettings() { rwl.writeLock().lock(); { // TODO vararg save method. pixMetaSrv.saveRndSettings(rendDefObj); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { rwl.writeLock().lock(); errorIfInvalidState(); | public void setActive(int w, boolean active) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); ChannelBinding[] cb = renderer.getChannelBindings(); cb[w].setActive(Boolean.valueOf(active)); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setActive(int w, boolean active) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); ChannelBinding[] cb = renderer.getChannelBindings(); cb[w].setActive(Boolean.valueOf(active)); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setChannelWindow(int w, double start, double end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setChannelWindow(w, start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setChannelWindow(int w, double start, double end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setChannelWindow(w, start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setCodomainInterval(int start, int end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setCodomainInterval(start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setCodomainInterval(int start, int end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setCodomainInterval(start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setDefaultT(int t) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultT(t); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setDefaultT(int t) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultT(t); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setDefaultZ(int z) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultZ(z); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setDefaultZ(int z) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultZ(z); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setModel(int model) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setModel(model); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setModel(int model) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setModel(model); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setQuantizatio... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setQuantizatio... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setQuantizatio... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setRGBA(int w, int red, int green, int blue, int alpha) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setRGBA(w, red, green, blue, alpha); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
} finally { rwl.writeLock().unlock(); | public void setRGBA(int w, int red, int green, int blue, int alpha) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setRGBA(w, red, green, blue, alpha); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
rwl.writeLock().unlock(); | public void setRGBA(int w, int red, int green, int blue, int alpha) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setRGBA(w, red, green, blue, alpha); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void updateCodomainMap(CodomainMapContext mapCtx) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.getCodomainChain().update(mapCtx.copy()); } rwl.writeLock().unlock(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void updateCodomainMap(CodomainMapContext mapCtx) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.getCodomainChain().update(mapCtx.copy()); } rwl.writeLock().unlock(); ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java | |
{ | try { | public void usePixels(Pixels pixels) { rwl.writeLock().lock(); { this.pixelsObj = pixels; this.renderer = null; } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | if (log.isDebugEnabled()) log.debug("Using pixels: "+this.pixelsObj); | public void usePixels(Pixels pixels) { rwl.writeLock().lock(); { this.pixelsObj = pixels; this.renderer = null; } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
super(runtime, null, superClass, runtime.getObject(), "Class", RubyClass.class); | super(runtime, null, superClass, runtime.getObject().getCRef(), "Class", RubyClass.class); | public ClassMetaClass(IRuby runtime, RubyClass superClass) { super(runtime, null, superClass, runtime.getObject(), "Class", RubyClass.class); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a1b8fc1d456e3d5c6e01579b88773383068aa85c/ClassMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ClassMetaClass.java |
if (target == null) return; | void showMenu(int x, int y) { TreePopupMenu menu = view.getPopupMenu(); DataObject target = getDataObject(); String txt = TreePopupMenu.BROWSE; boolean b = false; if (target instanceof ImageSummary) { txt = TreePopupMenu.VIEW; b = true; } men... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/f8f7dcdd74bccad5e7a9d969c7ab47c1cfee6015/SearchResultsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/SearchResultsPane.java | |
throws IOException, QuantizationException | throws IOException, QuantizationException | RGBBuffer render(Renderer ctx, PlaneDef planeDef) throws IOException, QuantizationException { //Set the rendering context for the current invocation. renderer = ctx; RenderingStats performanceStats = renderer.getStats(); //Initialize sizeX1 and sizeX2 according to the p... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/HSBStrategy.java/buggy/components/rendering/src/omeis/providers/re/HSBStrategy.java |
renderer = ctx; RenderingStats performanceStats = renderer.getStats(); | renderer = ctx; RenderingStats performanceStats = renderer.getStats(); Pixels metadata = renderer.getMetadata(); initAxesSize(planeDef, metadata); performanceStats.startMalloc(); RGBBuffer buf = new RGBBuffer(sizeX1, sizeX2); performanceStats.endMalloc(); | RGBBuffer render(Renderer ctx, PlaneDef planeDef) throws IOException, QuantizationException { //Set the rendering context for the current invocation. renderer = ctx; RenderingStats performanceStats = renderer.getStats(); //Initialize sizeX1 and sizeX2 according to the p... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/HSBStrategy.java/buggy/components/rendering/src/omeis/providers/re/HSBStrategy.java |
initAxesSize(planeDef, renderer.getMetadata()); RenderHSBWaveTask[] tasks = makeRndTasks(planeDef); performanceStats.startRendering(); int n = tasks.length; Future[] rndTskFutures = new Future[n]; ExecutorService processor = Executors.newCachedThreadPool(); while (0 < --n) rndTskFutures[n] = processor.submit(tas... | render(buf, planeDef); return buf; | RGBBuffer render(Renderer ctx, PlaneDef planeDef) throws IOException, QuantizationException { //Set the rendering context for the current invocation. renderer = ctx; RenderingStats performanceStats = renderer.getStats(); //Initialize sizeX1 and sizeX2 according to the p... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/HSBStrategy.java/buggy/components/rendering/src/omeis/providers/re/HSBStrategy.java |
public CGCILoader(HiViewer viewer, Set images) | public CGCILoader(HiViewer viewer, Set images, boolean refresh) | public CGCILoader(HiViewer viewer, Set images) { super(viewer); this.images = images; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/CGCILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/CGCILoader.java |
this.refresh = refresh; | public CGCILoader(HiViewer viewer, Set images) { super(viewer); this.images = images; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/CGCILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/CGCILoader.java | |
viewer.setHierarchyRoots((Set) result, false); | viewer.setHierarchyRoots((Set) result, false, refresh); | public void handleResult(Object result) { if (viewer.getState() == HiViewer.DISCARDED) return; //Async cancel. viewer.setHierarchyRoots((Set) result, false); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/CGCILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/CGCILoader.java |
this.name = RubyString.newString(ruby, name); this.script = RubyString.newString(ruby, script); } | this.name = RubyString.newString(ruby, name); this.script = RubyString.newString(ruby, script); } | EvalThread(String name, String script) { this.name = RubyString.newString(ruby, name); this.script = RubyString.newString(ruby, script); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
ruby.getRuntime().loadScript(name, script, false); out.close(); } | try { ruby.getRuntime().loadScript(name, script, false); } finally { out.close(); } } | public void run() { ruby.getRuntime().loadScript(name, script, false); out.close(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
super(name); } | super(name); } | public TestRubyBase(String name) { super(name); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); | pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); | protected String eval(String script) { pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); /... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); RubyIO lStream = new RubyIO(ruby); lStream.initIO(null, out, null); ruby.setGlobalVar("$stdout", lStream); ruby.setGlobalVar("$>", lStream); lStream = (RubyIO) ruby.getGlobalVar("$stderr")... | String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); RubyIO lStream = new RubyIO(ruby); lStream.initIO(null, out, null); ruby.setGlobalVar("$stdout", lStream); ruby.setGlobalVar("$>", lStream); lStream = (RubyIO) ruby.getGlobalVar("$stderr")... | protected String eval(String script) { pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); /... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException ex) { } } | try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException ex) { } } | public void tearDown() { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException ex) { } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
handleShowProperties((ShowProperties) ae); | handleShowProperties((ShowProperties) ae); | public void eventFired(AgentEvent ae) { if (ae instanceof ShowProperties) handleShowProperties((ShowProperties) ae); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a4d9266809d3b97be3f024727acd05038573d4c0/TreeViewerAgent.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/TreeViewerAgent.java |
for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) | for (Enumeration enumeration = _request.getParameterNames(); enumeration.hasMoreElements();) | final public String toString () { StringBuffer sb = new StringBuffer(); String eol = java.lang.System.getProperty("line.separator"); for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) { String key = (String) enum.nextElement(); String[... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/66b6fa23bd4cbc41e75a36f1705ebb0db3d2f013/Form.java/buggy/webmacro/src/org/webmacro/servlet/Form.java |
String key = (String) enum.nextElement(); | String key = (String) enumeration.nextElement(); | final public String toString () { StringBuffer sb = new StringBuffer(); String eol = java.lang.System.getProperty("line.separator"); for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) { String key = (String) enum.nextElement(); String[... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/66b6fa23bd4cbc41e75a36f1705ebb0db3d2f013/Form.java/buggy/webmacro/src/org/webmacro/servlet/Form.java |
return sb.toString(); } | final public String toString () { StringBuffer sb = new StringBuffer(); String eol = java.lang.System.getProperty("line.separator"); for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) { String key = (String) enum.nextElement(); String[... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/66b6fa23bd4cbc41e75a36f1705ebb0db3d2f013/Form.java/buggy/webmacro/src/org/webmacro/servlet/Form.java | |
int numberOfMillisecondsInTheFuture = 5000; | int numberOfMillisecondsInTheFuture = 10000; | public void loadPlugins() { // Add presence and message listeners // we listen for these to force open a 1-1 peer chat window from other operators if // one isn't already open PacketFilter workspaceMessageFilter = new PacketTypeFilter(Message.class); // Add the packetListener to t... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/e3a7a307a8f9a8e562406bb4e0820d56a5810759/Workspace.java/buggy/src/java/org/jivesoftware/spark/Workspace.java |
public ModelBased map (Filterable source){ | public ModelBased map (Filterable source){ | public ModelBased map (Filterable source){ // TODO take any object. just like filter() Filterable o = this.filter("MAPPING...",source); return (ModelBased) model2target.get(o); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0aa4af63b981e511b5fb82621bc6293945ca0d64/ModelMapper.java/clean/components/common/src/ome/util/ModelMapper.java |
public AnnotateAction(TreeViewer model) { super(model); name = NAME; //putValue(Action.NAME, NAME); putValue(Action.SHORT_DESCRIPTION, UIUtilities.formatToolTipText(DESCRIPTION)); IconManager im = IconManager.getInstance(); putValue(Action.SMALL_ICON, im.... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java | ||
description = DESCRIPTION; | public AnnotateAction(TreeViewer model) { super(model); name = NAME; //putValue(Action.NAME, NAME); putValue(Action.SHORT_DESCRIPTION, UIUtilities.formatToolTipText(DESCRIPTION)); IconManager im = IconManager.getInstance(); putValue(Action.SMALL_ICON, im.... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java | |
Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); | setValuesFor(selectedDisplay.getUserObject()); | protected void onDisplayChange(TreeImageDisplay selectedDisplay) { if (selectedDisplay == null) { setEnabled(false); return; } Browser browser = model.getSelectedBrowser(); if (browser != null) { if (browser.getSelectedDisplays().length > 1) { ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java |
Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); | setValuesFor(selectedDisplay.getUserObject()); | protected void onDisplayChange(TreeImageDisplay selectedDisplay) { if (selectedDisplay == null) { setEnabled(false); return; } Browser browser = model.getSelectedBrowser(); if (browser != null) { if (browser.getSelectedDisplays().length > 1) { ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java |
return (int) (a*(x-tW)+b); | return (int) (a*y+b); | int convertGraphicsIntoReal(int x) { int b = control.getGlobalMaximum(); double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; return (int) (a*(x-tW)+b); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/de5f198f3677f9aa6bbdd6719a3abfc6406f1479/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
public void setPaneIndex(int index) | public void setPaneIndex(int index, ImageDisplay node) | public void setPaneIndex(int index) { if (index != SEARCH_PANEL && index != ANNOTATION_PANEL) throw new IllegalArgumentException("Pane index not valid."); if (model.getPaneIndex() == index) return; model.setPaneIndex(index); view.onDisplayChange( model.getPar... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/ClipBoardComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardComponent.java |
view.onDisplayChange( model.getParentModel().getBrowser().getSelectedDisplay()); | public void setPaneIndex(int index) { if (index != SEARCH_PANEL && index != ANNOTATION_PANEL) throw new IllegalArgumentException("Pane index not valid."); if (model.getPaneIndex() == index) return; model.setPaneIndex(index); view.onDisplayChange( model.getPar... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/ClipBoardComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardComponent.java | |
if (node == null) view.onDisplayChange( model.getParentModel().getBrowser().getSelectedDisplay()); else firePropertyChange(ClipBoard.LOCALIZE_IMAGE_DISPLAY, null, node); | public void setPaneIndex(int index) { if (index != SEARCH_PANEL && index != ANNOTATION_PANEL) throw new IllegalArgumentException("Pane index not valid."); if (model.getPaneIndex() == index) return; model.setPaneIndex(index); view.onDisplayChange( model.getPar... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/ClipBoardComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardComponent.java | |
threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); | threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode(), iVisited.getVarNode()), self); | public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { SourcePosition posi... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/95597cee751b3d52aa89d777e164e620f649ade9/EvaluateVisitor.java/clean/src/org/jruby/evaluator/EvaluateVisitor.java |
threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); | threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode(), iVisited.getVarNode()), self); | public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVi... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/95597cee751b3d52aa89d777e164e620f649ade9/EvaluateVisitor.java/clean/src/org/jruby/evaluator/EvaluateVisitor.java |
super.paintComponent(g); | public void paintComponent(Graphics g) { Graphics2D g2D = (Graphics2D) g; g2D.setColor(bgColor); g2D.fillRect(0, 0, WIDTH, HEIGHT); Font font = g2D.getFont(); FontMetrics fontMetrics = g2D.getFontMetrics(); int hFont = fontMetrics.getHeight(); Rectangle2D rInput = font.getStringBounds("(1) Input", g... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6a28b54c142c80cf786f76c45b6be256d92fd0bb/PlaneSlicingPanel.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/PlaneSlicingPanel.java | |
return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/VCallNode.java/clean/src/org/jruby/ast/VCallNode.java |
throw lastCallType == CallType.VARIABLE ? runtime.newNameError(msg) : runtime.newNoMethodError(msg); | throw lastCallType == CallType.VARIABLE ? runtime.newNameError(msg, name) : runtime.newNoMethodError(msg, name); | public static IRubyObject method_missing(IRubyObject recv, IRubyObject[] args) { IRuby runtime = recv.getRuntime(); if (args.length == 0) { throw recv.getRuntime().newArgumentError("no id given"); } String name = args[0].asSymbol(); String description = recv.callMethod(... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1278c5bb3507a052d150d814f15453542ae41aed/RubyKernel.java/buggy/src/org/jruby/RubyKernel.java |
throw runtime.newNameError(message); | throw runtime.newNameError(message, tag); | public static IRubyObject rbThrow(IRubyObject recv, IRubyObject[] args) { IRuby runtime = recv.getRuntime(); String tag = args[0].asSymbol(); String[] catches = runtime.getCurrentContext().getActiveCatches(); String message = "uncaught throw '" + tag + '\''; //Ordering of array tr... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1278c5bb3507a052d150d814f15453542ae41aed/RubyKernel.java/buggy/src/org/jruby/RubyKernel.java |
getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("control N"), "searchContacts"); getActionMap().put("searchContacts", new AbstractAction("searchContacts") { public void actionPerformed(ActionEvent evt) { SparkManager.getUserManager().searchContacts("", SparkManager.getChatManager().getChatCon... | private void addKeyNavigation() { KeyStroke leftStroke = KeyStroke.getKeyStroke(KeyEvent.VK_LEFT, 0); String leftStrokeString = org.jivesoftware.spark.util.StringUtils.keyStroke2String(leftStroke); // Handle Left Arrow this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.get... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java | |
ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } } | ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { closeTab(chatRoom); | public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
} | public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java | |
for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms); | ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } | public void actionPerformed(ActionEvent e) { for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasJoined(room, userid); } | handleMessageNotification(chatRoom); | public void run() { final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasJoined(room, userid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
((ChatRoomListener)iter.next()).userHasLeft(room, userid); | ((ChatRoomListener)iter.next()).userHasJoined(room, userid); | public void run() { final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel(... | final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid); | public void run() { try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String ap... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); | boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); | Log.error("Issue in ChatRooms with tab location.", ex); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
SparkManager.getAlertManager().stopFlashing(chatFrame); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); ... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java | |
final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setT... | public void run() { try { boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flash... | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java | |
public RubyObject reverse_bang() { modify(); Collections.reverse(list); return this; | public RubyArray reverse_bang() { if (list.size() <= 1) { return nilArray(ruby); } modify(); Collections.reverse(list); return this; | public RubyObject reverse_bang() { modify(); Collections.reverse(list); return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0335f0acaf11ca0feb41907f65e7274f8ed49fc3/RubyArray.java/clean/org/jruby/RubyArray.java |
receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), new IRubyObject[] {value}, 0); | receiver.getInternalClass().call(receiver, iVisited.getName(), new IRubyObject[] {value}, 0); | public void visitCallNode(CallNode iVisited) { EvaluateVisitor evaluator = EvaluateVisitor.createVisitor(self); IRubyObject receiver = evaluator.eval(iVisited.getReceiverNode()); if (iVisited.getArgsNode() == null) { // attribute set. receiver.getInternalClass().call(receiver.toRubyO... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/AssignmentVisitor.java/buggy/org/jruby/evaluator/AssignmentVisitor.java |
receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), args.toJavaArray(), 0); | receiver.getInternalClass().call(receiver, iVisited.getName(), args.toJavaArray(), 0); | public void visitCallNode(CallNode iVisited) { EvaluateVisitor evaluator = EvaluateVisitor.createVisitor(self); IRubyObject receiver = evaluator.eval(iVisited.getReceiverNode()); if (iVisited.getArgsNode() == null) { // attribute set. receiver.getInternalClass().call(receiver.toRubyO... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/AssignmentVisitor.java/buggy/org/jruby/evaluator/AssignmentVisitor.java |
env.getBrowserManager().addBrowser(controller); | public void loadDataset(int datasetID) { DataManagementService dms = registry.getDataManagementService(); DatasetData dataset; final BrowserModel model = new BrowserModel(); model.setLayoutMethod(new NumColsLayoutMethod(8)); BrowserTopModel topModel = new BrowserTopMode... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java | |
env.getBrowserManager().addBrowser(bif); | public void loadDataset(int datasetID) { DataManagementService dms = registry.getDataManagementService(); DatasetData dataset; final BrowserModel model = new BrowserModel(); model.setLayoutMethod(new NumColsLayoutMethod(8)); BrowserTopModel topModel = new BrowserTopMode... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java | |
model.addThumbnail(t); | thumbnails.add(t); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.se... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
String message = ProgressMessageFormatter.format("Loaded image %n of %t...", count,total); status.processAdvanced(message); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.se... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java | |
model.addThumbnail(t); | String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); thumbnails.add(t); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.se... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
Thumbnail[] ts = new Thumbnail[thumbnails.size()]; thumbnails.toArray(ts); model.addThumbnails(ts); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.se... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java | |
Thumbnail[] ts = new Thumbnail[thumbnails.size()]; thumbnails.toArray(ts); model.addThumbnails(ts); | public void run() { status.processSucceeded("All images loaded."); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java | |
model.addThumbnail(t); | thumbnails.add(t); | public void run() { model.addThumbnail(t); String message = ProgressMessageFormatter.format("Loaded image %n of %t...", ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
model.addThumbnail(t); | String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); thumbnails.add(t); | public void run() { model.addThumbnail(t); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
public void loadImage(int imageID) | public void loadImage(Thumbnail t) | public void loadImage(int imageID) { // TODO: fill in loadImage(int) } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
ThumbnailDataModel tdm = t.getModel(); int imageID = tdm.getID(); Pixels pixels = (Pixels)tdm.getAttributeMap().getAttribute("Pixels"); int pixelsID = pixels.getID(); loadImage(imageID,pixelsID); | public void loadImage(int imageID) { // TODO: fill in loadImage(int) } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java | |
: "UNKNOWN. Throwing exceptin")); | : "UNKNOWN. Throwing exception")); | public void write(FastWriter out, Context context) throws PropertyException, IOException { Broker broker = context.getBroker(); // the filename arg passed to us was a Macro, so // evaluate and check it now if (_macFilename != null) { _strFilename = _macFilename.evaluate(context).toString(... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/ff709ec8523aa5b42a000462169b11be88cd46de/IncludeDirective.java/buggy/webmacro/src/org/webmacro/directive/IncludeDirective.java |
double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; | double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; | int convertGraphicsIntoReal(int x) { int b = control.getGlobalMaximum(); double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; return (int) (a*(x-tW)+b); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/83f676753e39a506a8cb86c443c49fa697ec99eb/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
autoResize(Math.max(0, index + position - 1)); | autoResize(Math.max(0, index + position)); | public void add(int index, Object element) { autoResize(Math.max(0, index + position - 1)); delegate.add(index + position, element); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
delegate.addAll(0, Collections.nCopies(-index, autoResizeObject)); position += -index; } else if (index >= delegate.size()) { | throw new UnsupportedOperationException("Cannot access an element left of the list"); } else if (index > delegate.size()) { | protected void autoResize(int index) { if (!autoResize) { return; } else if (index < 0) { delegate.addAll(0, Collections.nCopies(-index, autoResizeObject)); position += -index; } else if (index >= delegate.size()) { delegate.ensureCapacity... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
for (int i = delegate.size(); i <= index; i++) { | for (int i = delegate.size(); i < index; i++) { | protected void autoResize(int index) { if (!autoResize) { return; } else if (index < 0) { delegate.addAll(0, Collections.nCopies(-index, autoResizeObject)); position += -index; } else if (index >= delegate.size()) { delegate.ensureCapacity... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
autoResize(index + position); | autoResize(index + position + 1); | public Object get(int index) { autoResize(index + position); return delegate.get(index + position); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
autoResize(index + position); | autoResize(index + position + 1); | public Object set(int index, Object element) { autoResize(index + position); return delegate.set(index + position, element); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
FastWriter w = new FastWriter(System.out, "UTF8"); | FastWriter w = new FastWriter(System.out, context.getEncoding()); | public static void main(String arg[]) { Log.traceExceptions(true); Log.setLevel(Log.ALL); Log.setTarget(System.err); if (arg.length != 0) { System.out.println("Enabling log types"); Log.enableTypes(arg); } // Build a context WebMacro wm = null; Context conte... | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/9dc4324fb914abcbf2ec188e4eb77b1bf503f330/StreamTemplate.java/clean/webmacro/src/org/webmacro/engine/StreamTemplate.java |
panHandler = new BoundedDragPanHandler(null); | panHandler = new BoundedEdgePanHandler(); | private void init() { env = BrowserEnvironment.getInstance(); setBackground(new Color(192,192,192)); layoutMap = new HashMap(); footprint = new Rectangle2D.Double(0,0,0,0); // here we disable zoom/pan (TODO: save for later, reinstate on mode) removeInputEventList... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b927571573c6b14fb6e5653fcb9385cd15bd16be/BrowserView.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserView.java |
return "ImageDimension"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); | return "ImageDimension"+(attributeId==null ? ":Hash_"+this.hashCode() : ":Id_"+attributeId); | public String toString(){ return "ImageDimension"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/ImageDimension.java/clean/components/common/src/ome/model/ImageDimension.java |
super(parameters); | super( defs, parameters); | public PojosLoadHierarchyQueryDefinition(QueryParameter... parameters) { super(parameters); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/f990a7d35ce265e182121d562725175896db41f4/PojosLoadHierarchyQueryDefinition.java/clean/components/server/src/ome/services/query/PojosLoadHierarchyQueryDefinition.java |
Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = methods[i]; if (method.getName().equals(name)) { return method; | try { Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = methods[i]; if (method.getName().equals(name)) { return method; } | protected static Method findMethod(String name) { Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = m... | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/19ade509a8b0389eecc524e7e39c49aeaf9c65c7/QNameReflectionHelper.java/clean/xbean-spring-common/src/main/java/org/apache/xbean/spring/context/impl/QNameReflectionHelper.java |
} catch (Throwable t) { | protected static Method findMethod(String name) { Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = m... | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/19ade509a8b0389eecc524e7e39c49aeaf9c65c7/QNameReflectionHelper.java/clean/xbean-spring-common/src/main/java/org/apache/xbean/spring/context/impl/QNameReflectionHelper.java | |
public static RubyObject m_print(Ruby ruby, RubyObject args[]) { | public static RubyObject m_print(Ruby ruby, RubyModule rubyClass, RubyObject args[]) { | public static RubyObject m_print(Ruby ruby, RubyObject args[]) { for (int i = 0; i < args.length; i++) { if (args[i] != null) { System.out.print(((RubyString)args[i].funcall(ruby.intern("to_s"))).getString()); } } return ruby.getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/76d3fd1bbcdbd38082a9b8c19c593b06ed915280/RBKernel.java/buggy/org/jruby/core/RBKernel.java |
public static RubyObject m_puts(Ruby ruby, RubyObject args[]) { | public static RubyObject m_puts(Ruby ruby, RubyModule rubyClass, RubyObject args[]) { | public static RubyObject m_puts(Ruby ruby, RubyObject args[]) { if (args.length == 0) { System.out.println(); } else { for (int i = 0; i < args.length; i++) { if (args[i] != null) { System.out.println(((RubyString)args[i].funcall(ruby.intern("to_... | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/76d3fd1bbcdbd38082a9b8c19c593b06ed915280/RBKernel.java/buggy/org/jruby/core/RBKernel.java |
ht.flush(); | public Object invoke(MethodInvocation arg0) throws Throwable { CurrentDetails.clear(); setDetails(); try { Object retVal = arg0.proceed(); ht.flush(); // TODO performance? but HInterceptor is flushing // after finally { clear } return ... | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2752630e0bbf2c7a5f4bcfda3cff9f1e4a433664/EventHandler.java/clean/components/server/src/ome/tools/hibernate/EventHandler.java | |
removeContactItem(jid); | RosterEntry rosterEntry = roster.getEntry(jid); if (rosterEntry != null) { boolean isUnfiled = true; for (RosterGroup group : rosterEntry.getGroups()) { isUnfiled = false; if (getContactGroup(group.getName()) == null) { ContactGroup contactGroup = addContactGroup(group.getName()); contactGroup.setVisible(false); co... | public void run() { Iterator jids = addresses.iterator(); while (jids.hasNext()) { String jid = (String)jids.next(); removeContactItem(jid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/2241699ff3d2ad8e9d909d7be10dd19a3a3c757c/ContactList.java/buggy/src/java/org/jivesoftware/spark/ui/ContactList.java |
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