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0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/clap/configuration_clap.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""CLAP model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class ClapTextConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ClapTextModel`]. It is used to instantiate a CLAP
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the CLAP
[calp-hsat-fused](https://huggingface.co/laion/clap-hsat-fused) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the CLAP model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`ClapTextModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `Callable`, *optional*, defaults to `"relu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"relu"`,
`"relu"`, `"silu"` and `"relu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`ClapTextModel`].
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
projection_hidden_act (`str`, *optional*, defaults to `"relu"`):
The non-linear activation function (function or string) in the projection layer. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
projection_dim (`int`, *optional*, defaults to 512)
Dimension of the projection head of the `ClapTextModelWithProjection`.
Examples:
```python
>>> from transformers import ClapTextConfig, ClapTextModel
>>> # Initializing a CLAP text configuration
>>> configuration = ClapTextConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = ClapTextModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "clap_text_model"
base_config_key = "text_config"
def __init__(
self,
vocab_size=50265,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=514,
type_vocab_size=1,
initializer_factor=1.0,
layer_norm_eps=1e-12,
projection_dim=512,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
position_embedding_type="absolute",
use_cache=True,
projection_hidden_act="relu",
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_factor = initializer_factor
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.projection_hidden_act = projection_hidden_act
self.projection_dim = projection_dim
class ClapAudioConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ClapAudioModel`]. It is used to instantiate a
CLAP audio encoder according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the audio encoder of the CLAP
[laion/clap-htsat-fused](https://huggingface.co/laion/clap-htsat-fused) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
window_size (`int`, *optional*, defaults to 8):
Image size of the spectrogram
num_mel_bins (`int`, *optional*, defaults to 64):
Number of mel features used per frames. Should correspond to the value used in the `ClapProcessor` class.
spec_size (`int`, *optional*, defaults to 256):
Desired input size of the spectrogram that the model supports. It can be different from the output of the
`ClapFeatureExtractor`, in which case the input features will be resized. Corresponds to the `image_size`
of the audio models.
hidden_act (`str`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
patch_size (`int`, *optional*, defaults to 4):
Patch size for the audio spectrogram
patch_stride (`list`, *optional*, defaults to `[4, 4]`):
Patch stride for the audio spectrogram
num_classes (`int`, *optional*, defaults to 527):
Number of classes used for the head training
hidden_size (`int`, *optional*, defaults to 768):
Hidden size of the output of the audio encoder. Correspond to the dimension of the penultimate layer's
output,which is sent to the projection MLP layer.
projection_dim (`int`, *optional*, defaults to 512):
Hidden size of the projection layer.
depths (`list`, *optional*, defaults to `[2, 2, 6, 2]`):
Depths used for the Swin Layers of the audio model
num_attention_heads (`list`, *optional*, defaults to `[4, 8, 16, 32]`):
Number of attention heads used for the Swin Layers of the audio model
enable_fusion (`bool`, *optional*, defaults to `False`):
Whether or not to enable patch fusion. This is the main contribution of the authors, and should give the
best results.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the encoder.
fusion_type (`[type]`, *optional*):
Fusion type used for the patch fusion.
patch_embed_input_channels (`int`, *optional*, defaults to 1):
Number of channels used for the input spectrogram
flatten_patch_embeds (`bool`, *optional*, defaults to `True`):
Whether or not to flatten the patch embeddings
patch_embeds_hidden_size (`int`, *optional*, defaults to 96):
Hidden size of the patch embeddings. It is used as the number of output channels.
enable_patch_layer_norm (`bool`, *optional*, defaults to `True`):
Whether or not to enable layer normalization for the patch embeddings
drop_path_rate (`float`, *optional*, defaults to 0.0):
Drop path rate for the patch fusion
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether or not to add a bias to the query, key, value projections.
mlp_ratio (`float`, *optional*, defaults to 4.0):
Ratio of the mlp hidden dim to embedding dim.
aff_block_r (`int`, *optional*, defaults to 4):
downsize_ratio used in the AudioFF block
num_hidden_layers (`int`, *optional*, defaults to 4):
Number of hidden layers in the Transformer encoder.
projection_hidden_act (`str`, *optional*, defaults to `"relu"`):
The non-linear activation function (function or string) in the projection layer. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
layer_norm_eps (`[type]`, *optional*, defaults to 1e-05):
The epsilon used by the layer normalization layers.
initializer_factor (`float`, *optional*, defaults to 1.0):
A factor for initializing all weight matrices (should be kept to 1, used internally for initialization
testing).
Example:
```python
>>> from transformers import ClapAudioConfig, ClapAudioModel
>>> # Initializing a ClapAudioConfig with laion/clap-htsat-fused style configuration
>>> configuration = ClapAudioConfig()
>>> # Initializing a ClapAudioModel (with random weights) from the laion/clap-htsat-fused style configuration
>>> model = ClapAudioModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "clap_audio_model"
base_config_key = "audio_config"
def __init__(
self,
window_size=8,
num_mel_bins=64,
spec_size=256,
hidden_act="gelu",
patch_size=4,
patch_stride=[4, 4],
num_classes=527,
hidden_size=768,
projection_dim=512,
depths=[2, 2, 6, 2],
num_attention_heads=[4, 8, 16, 32],
enable_fusion=False,
hidden_dropout_prob=0.1,
fusion_type=None,
patch_embed_input_channels=1,
flatten_patch_embeds=True,
patch_embeds_hidden_size=96,
enable_patch_layer_norm=True,
drop_path_rate=0.0,
attention_probs_dropout_prob=0.0,
qkv_bias=True,
mlp_ratio=4.0,
aff_block_r=4,
num_hidden_layers=4,
projection_hidden_act="relu",
layer_norm_eps=1e-5,
initializer_factor=1.0,
**kwargs,
):
super().__init__(**kwargs)
self.window_size = window_size
self.num_mel_bins = num_mel_bins
self.spec_size = spec_size
self.patch_size = patch_size
self.patch_stride = patch_stride
self.num_classes = num_classes
self.hidden_size = hidden_size
self.depths = depths
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.window_size = window_size
self.enable_fusion = enable_fusion
self.fusion_type = fusion_type
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.projection_dim = projection_dim
self.flatten_patch_embeds = flatten_patch_embeds
self.patch_embeds_hidden_size = patch_embeds_hidden_size
self.enable_patch_layer_norm = enable_patch_layer_norm
self.drop_path_rate = drop_path_rate
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.qkv_bias = qkv_bias
self.mlp_ratio = mlp_ratio
self.patch_embed_input_channels = patch_embed_input_channels
self.aff_block_r = aff_block_r
self.layer_norm_eps = layer_norm_eps
self.initializer_factor = initializer_factor
self.projection_hidden_act = projection_hidden_act
class ClapConfig(PretrainedConfig):
r"""
[`ClapConfig`] is the configuration class to store the configuration of a [`ClapModel`]. It is used to instantiate
a CLAP model according to the specified arguments, defining the text model and audio model configs. Instantiating a
configuration with the defaults will yield a similar configuration to that of the CLAP
[laion/clap-htsat-fused](https://huggingface.co/laion/clap-htsat-fused) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
text_config (`dict`, *optional*):
Dictionary of configuration options used to initialize [`ClapTextConfig`].
audio_config (`dict`, *optional*):
Dictionary of configuration options used to initialize [`ClapAudioConfig`].
logit_scale_init_value (`float`, *optional*, defaults to 14.29):
The initial value of the *logit_scale* parameter. Default is used as per the original CLAP implementation.
projection_dim (`int`, *optional*, defaults to 512):
Dimensionality of text and audio projection layers.
projection_hidden_act (`str`, *optional*, defaults to `"relu"`):
Activation function for the projection layers.
initializer_factor (`float`, *optional*, defaults to 1.0):
Factor to scale the initialization of the model weights.
kwargs (*optional*):
Dictionary of keyword arguments.
Example:
```python
>>> from transformers import ClapConfig, ClapModel
>>> # Initializing a ClapConfig with laion-ai/base style configuration
>>> configuration = ClapConfig()
>>> # Initializing a ClapModel (with random weights) from the laion-ai/base style configuration
>>> model = ClapModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
>>> # We can also initialize a ClapConfig from a ClapTextConfig and a ClapAudioConfig
>>> from transformers import ClapTextConfig, ClapAudioConfig
>>> # Initializing a ClapText and ClapAudioConfig configuration
>>> config_text = ClapTextConfig()
>>> config_audio = ClapAudioConfig()
>>> config = ClapConfig.from_text_audio_configs(config_text, config_audio)
```"""
model_type = "clap"
sub_configs = {"text_config": ClapTextConfig, "audio_config": ClapAudioConfig}
def __init__(
self,
text_config=None,
audio_config=None,
logit_scale_init_value=(1 / 0.07),
projection_dim=512,
projection_hidden_act="relu",
initializer_factor=1.0,
**kwargs,
):
super().__init__(**kwargs)
if text_config is None:
text_config = {}
logger.info("text_config is None. Initializing the ClapTextConfig with default values.")
if audio_config is None:
audio_config = {}
logger.info("audio_config is None. initializing the ClapAudioConfig with default values.")
self.text_config = ClapTextConfig(**text_config)
self.audio_config = ClapAudioConfig(**audio_config)
self.text_config.projection_dim = projection_dim
self.audio_config.projection_dim = projection_dim
self.text_config.projection_hidden_act = projection_hidden_act
self.audio_config.projection_hidden_act = projection_hidden_act
self.projection_dim = projection_dim
self.projection_hidden_act = projection_hidden_act
self.hidden_size = self.text_config.hidden_size
self.logit_scale_init_value = logit_scale_init_value
self.initializer_factor = initializer_factor
self.num_hidden_layers = self.text_config.num_hidden_layers + len(self.audio_config.depths)
@classmethod
def from_text_audio_configs(cls, text_config: ClapTextConfig, audio_config: ClapAudioConfig, **kwargs):
r"""
Instantiate a [`ClapConfig`] (or a derived class) from clap text model configuration and clap audio model
configuration.
Returns:
[`ClapConfig`]: An instance of a configuration object
"""
return cls(text_config=text_config.to_dict(), audio_config=audio_config.to_dict(), **kwargs)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/clap/modeling_clap.py | # coding=utf-8
# Copyright 2023 The LAION-AI Team and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch CLAP model."""
import collections
import math
from dataclasses import dataclass
from typing import Any, List, Optional, Tuple, Union
import torch
import torch.nn.functional as F
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPooling,
BaseModelOutputWithPoolingAndCrossAttentions,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, meshgrid, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
torch_int,
)
from .configuration_clap import ClapAudioConfig, ClapConfig, ClapTextConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "laion/clap-htsat-fused"
# Adapted from: https://github.com/LAION-AI/CLAP/blob/6ad05a971ba0622f6acee8c41993e0d02bbed639/src/open_clip/utils.py#L191
def interpolate(hidden_states, ratio):
"""
Interpolate data in time domain. This is used to compensate the resolution reduction in downsampling of a CNN.
Args:
hidden_states (`torch.FloatTensor` of shape (batch_size, time_length, classes_num)):
Input hidden states
ratio (`int`):
The ratio of the length of the output to the length of the input.
"""
(batch_size, time_length, classes_num) = hidden_states.shape
upsampled = hidden_states[:, :, None, :].repeat(1, 1, ratio, 1)
upsampled = upsampled.reshape(batch_size, time_length * ratio, classes_num)
return upsampled
# Adapted from https://github.com/LAION-AI/CLAP/blob/6ad05a971ba0622f6acee8c41993e0d02bbed639/src/open_clip/htsat.py#L249
def window_partition(hidden_states, window_size):
"""
Returns the resized hidden states. The output shape should be `(batch_size * num_windows, window_size, window_size,
num_channels)`
Args:
hidden_states (`torch.FloatTensor` of shape `(batch_size, height, width, num_channels)`):
Input hidden states
window_size (`int`):
Window size
"""
batch_size, height, width, num_channels = hidden_states.shape
hidden_states = hidden_states.view(
batch_size, height // window_size, window_size, width // window_size, window_size, num_channels
)
windows = hidden_states.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, num_channels)
return windows
# Adapted from https://github.com/LAION-AI/CLAP/blob/6ad05a971ba0622f6acee8c41993e0d02bbed639/src/open_clip/htsat.py#L263
def window_reverse(windows, window_size, height, width):
"""
Merges windows to produce higher resolution features.
Args:
windows (`torch.FloatTensor` of shape `(num_windows * batch_size, window_size, window_size, num_channels)`):
Input windows
window_size (`int`):
Window size
height (`int`):
Height of the resized audio
width (`int`):
Width of the resized audio
"""
num_channels = windows.shape[-1]
windows = windows.view(-1, height // window_size, width // window_size, window_size, window_size, num_channels)
windows = windows.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, height, width, num_channels)
return windows
# Copied from transformers.models.roberta.modeling_roberta.create_position_ids_from_input_ids
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
# contrastive loss function, adapted from
# https://sachinruk.github.io/blog/pytorch/pytorch%20lightning/loss%20function/gpu/2021/03/07/CLIP.html#CLIP-loss-function
def contrastive_loss(logits: torch.Tensor) -> torch.Tensor:
labels = torch.arange(len(logits), device=logits.device)
return nn.functional.cross_entropy(logits, labels)
@dataclass
# Copied from transformers.models.clip.modeling_clip.CLIPTextModelOutput with CLIP->Clap
class ClapTextModelOutput(ModelOutput):
"""
Base class for text model's outputs that also contains a pooling of the last hidden states.
Args:
text_embeds (`torch.FloatTensor` of shape `(batch_size, output_dim)` *optional* returned when model is initialized with `with_projection=True`):
The text embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
text_embeds: Optional[torch.FloatTensor] = None
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class ClapAudioModelOutput(ModelOutput):
"""
ClapAudio model output to mimic the output of the original implementation.
Args:
audio_embeds (`torch.FloatTensor` of shape `(batch_size, hidden_size)`):
The Audio embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
"""
audio_embeds: Optional[torch.FloatTensor] = None
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
# Copied from transformers.models.clip.modeling_clip.CLIPOutput with CLIP->Clap, vision->audio, Vision->Audio, image->audio
class ClapOutput(ModelOutput):
"""
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `return_loss` is `True`):
Contrastive loss for audio-text similarity.
logits_per_audio (`torch.FloatTensor` of shape `(audio_batch_size, text_batch_size)`):
The scaled dot product scores between `audio_embeds` and `text_embeds`. This represents the audio-text
similarity scores.
logits_per_text (`torch.FloatTensor` of shape `(text_batch_size, audio_batch_size)`):
The scaled dot product scores between `text_embeds` and `audio_embeds`. This represents the text-audio
similarity scores.
text_embeds (`torch.FloatTensor` of shape `(batch_size, output_dim`):
The text embeddings obtained by applying the projection layer to the pooled output of [`ClapTextModel`].
audio_embeds (`torch.FloatTensor` of shape `(batch_size, output_dim`):
The audio embeddings obtained by applying the projection layer to the pooled output of [`ClapAudioModel`].
text_model_output (`BaseModelOutputWithPooling`):
The output of the [`ClapTextModel`].
audio_model_output (`BaseModelOutputWithPooling`):
The output of the [`ClapAudioModel`].
"""
loss: Optional[torch.FloatTensor] = None
logits_per_audio: torch.FloatTensor = None
logits_per_text: torch.FloatTensor = None
text_embeds: torch.FloatTensor = None
audio_embeds: torch.FloatTensor = None
text_model_output: BaseModelOutputWithPooling = None
audio_model_output: BaseModelOutputWithPooling = None
def to_tuple(self) -> Tuple[Any]:
return tuple(
self[k] if k not in ["text_model_output", "audio_model_output"] else getattr(self, k).to_tuple()
for k in self.keys()
)
# Adapted from transformers.models.swin.modeling_swin.SwinDropPath
class ClapDropPath(nn.Module):
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). This is a slightly
refactored version of the `SwinDropPath` implementation.
"""
def __init__(self, drop_prob=None):
super().__init__()
self.drop_prob = drop_prob
def forward(self, hidden_states):
if self.drop_prob == 0.0 or not self.training:
return hidden_states
keep_prob = 1 - self.drop_prob
# work with diff dim tensors, not just 2D ConvNets
shape = (hidden_states.shape[0],) + (1,) * (hidden_states.ndim - 1)
random_tensor = keep_prob + torch.rand(shape, dtype=hidden_states.dtype, device=hidden_states.device)
random_tensor.floor_() # binarize
output = hidden_states.div(keep_prob) * random_tensor
return output
# Adapted from https://github.com/LAION-AI/CLAP/blob/6ad05a971ba0622f6acee8c41993e0d02bbed639/src/open_clip/feature_fusion.py#L133
class ClapAudioAFFBlock(nn.Module):
r"""
ATTENTIONAL FEATURE FUSION Block from CLAP, since in CLAP we are always in 2D mode, it is not needed to implement
the 1D version.
"""
def __init__(self, config: ClapAudioConfig):
super().__init__()
channels = config.patch_embeds_hidden_size
downsize_ratio = config.aff_block_r
inter_channels = int(channels // downsize_ratio)
self.local_att = nn.Sequential(
nn.Conv2d(channels, inter_channels, kernel_size=1, stride=1, padding=0),
nn.BatchNorm2d(inter_channels),
nn.ReLU(inplace=True),
nn.Conv2d(inter_channels, channels, kernel_size=1, stride=1, padding=0),
nn.BatchNorm2d(channels),
)
self.global_att = nn.Sequential(
nn.AdaptiveAvgPool2d(1),
nn.Conv2d(channels, inter_channels, kernel_size=1, stride=1, padding=0),
nn.BatchNorm2d(inter_channels),
nn.ReLU(inplace=True),
nn.Conv2d(inter_channels, channels, kernel_size=1, stride=1, padding=0),
nn.BatchNorm2d(channels),
)
self.sigmoid = nn.Sigmoid()
def forward(self, hidden_states, residual):
attention_input = hidden_states + residual
fused_layer_output = self.local_att(attention_input) + self.global_att(attention_input)
fused_layer_output = self.sigmoid(fused_layer_output)
output = 2 * hidden_states * fused_layer_output + 2 * residual * (1 - fused_layer_output)
return output
class ClapAudioPatchEmbed(nn.Module):
"""
This module converts the hidden states reshaped as an image to patch embeddings ready to be passed to the
Transformer block.
"""
def __init__(self, config: ClapAudioConfig):
super().__init__()
img_size = (config.spec_size, config.spec_size) if isinstance(config.spec_size, int) else config.spec_size
patch_size = (
(config.patch_size, config.patch_size) if isinstance(config.patch_size, int) else config.patch_size
)
patch_stride = (
(config.patch_stride, config.patch_stride) if isinstance(config.patch_stride, int) else config.patch_stride
)
self.img_size = img_size
self.patch_stride = patch_stride
self.grid_size = (img_size[0] // patch_stride[0], img_size[1] // patch_stride[1])
self.num_patches = self.grid_size[0] * self.grid_size[1]
self.flatten = config.flatten_patch_embeds
self.enable_fusion = config.enable_fusion
padding = ((patch_size[0] - patch_stride[0]) // 2, (patch_size[1] - patch_stride[1]) // 2)
scale_factor = 4 if (self.enable_fusion) and (config.fusion_type == "channel_map") else 1
self.proj = nn.Conv2d(
config.patch_embed_input_channels * scale_factor,
config.patch_embeds_hidden_size,
kernel_size=patch_size,
stride=patch_stride,
padding=padding,
)
self.norm = nn.LayerNorm(config.patch_embeds_hidden_size) if config.enable_patch_layer_norm else nn.Identity()
if self.enable_fusion:
self.fusion_model = ClapAudioAFFBlock(config)
self.mel_conv2d = nn.Conv2d(
config.patch_embed_input_channels,
config.patch_embeds_hidden_size,
kernel_size=(patch_size[0], patch_size[1] * 3),
stride=(patch_stride[0], patch_stride[1] * 3),
padding=padding,
)
def forward(self, hidden_states, is_longer_idx=None):
if self.enable_fusion:
# retrieve the last mel as we have transposed the input
global_hidden_states = hidden_states[:, 0:1, :, :]
# global processing
batch_size, num_channels, height, width = global_hidden_states.shape
if height != self.img_size[0] or width != self.img_size[1]:
raise ValueError(
f"Input audio size ({height}*{width}) doesn't match model ({self.img_size[0]}*{self.img_size[1]})."
)
global_hidden_states = self.proj(global_hidden_states)
output_width = global_hidden_states.size(-1)
if len(is_longer_idx) > 0:
# local processing
local_hidden_states = hidden_states[is_longer_idx, 1:, :, :].contiguous()
batch_size, num_channels, height, width = local_hidden_states.shape
local_hidden_states = local_hidden_states.view(batch_size * num_channels, 1, height, width)
local_hidden_states = self.mel_conv2d(local_hidden_states)
_, features, height, width = local_hidden_states.shape
local_hidden_states = local_hidden_states.view(batch_size, num_channels, features, height, width)
local_hidden_states = local_hidden_states.permute((0, 2, 3, 1, 4)).contiguous().flatten(3)
local_width = local_hidden_states.size(-1)
local_hidden_states = torch.nn.functional.pad(
local_hidden_states, (0, output_width - local_width), "constant", 0
)
global_hidden_states[is_longer_idx] = self.fusion_model(
global_hidden_states[is_longer_idx], local_hidden_states
)
hidden_states = global_hidden_states
else:
_, _, height, width = hidden_states.shape
if height != self.img_size[0] or width != self.img_size[1]:
raise ValueError(
f"Input audio size ({height}*{width}) doesn't match model ({self.img_size[0]}*{self.img_size[1]})."
)
hidden_states = self.proj(hidden_states)
if self.flatten:
hidden_states = hidden_states.flatten(2).transpose(1, 2)
hidden_states = self.norm(hidden_states)
return hidden_states
# Copied from transformers.models.swin.modeling_swin.SwinSelfAttention with Swin->ClapAudio
class ClapAudioSelfAttention(nn.Module):
def __init__(self, config, dim, num_heads, window_size):
super().__init__()
if dim % num_heads != 0:
raise ValueError(
f"The hidden size ({dim}) is not a multiple of the number of attention heads ({num_heads})"
)
self.num_attention_heads = num_heads
self.attention_head_size = int(dim / num_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.window_size = (
window_size if isinstance(window_size, collections.abc.Iterable) else (window_size, window_size)
)
self.relative_position_bias_table = nn.Parameter(
torch.zeros((2 * self.window_size[0] - 1) * (2 * self.window_size[1] - 1), num_heads)
)
# get pair-wise relative position index for each token inside the window
coords_h = torch.arange(self.window_size[0])
coords_w = torch.arange(self.window_size[1])
coords = torch.stack(meshgrid([coords_h, coords_w], indexing="ij"))
coords_flatten = torch.flatten(coords, 1)
relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :]
relative_coords = relative_coords.permute(1, 2, 0).contiguous()
relative_coords[:, :, 0] += self.window_size[0] - 1
relative_coords[:, :, 1] += self.window_size[1] - 1
relative_coords[:, :, 0] *= 2 * self.window_size[1] - 1
relative_position_index = relative_coords.sum(-1)
self.register_buffer("relative_position_index", relative_position_index)
self.query = nn.Linear(self.all_head_size, self.all_head_size, bias=config.qkv_bias)
self.key = nn.Linear(self.all_head_size, self.all_head_size, bias=config.qkv_bias)
self.value = nn.Linear(self.all_head_size, self.all_head_size, bias=config.qkv_bias)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
batch_size, dim, num_channels = hidden_states.shape
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
relative_position_bias = self.relative_position_bias_table[self.relative_position_index.view(-1)]
relative_position_bias = relative_position_bias.view(
self.window_size[0] * self.window_size[1], self.window_size[0] * self.window_size[1], -1
)
relative_position_bias = relative_position_bias.permute(2, 0, 1).contiguous()
attention_scores = attention_scores + relative_position_bias.unsqueeze(0)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in ClapAudioModel forward() function)
mask_shape = attention_mask.shape[0]
attention_scores = attention_scores.view(
batch_size // mask_shape, mask_shape, self.num_attention_heads, dim, dim
)
attention_scores = attention_scores + attention_mask.unsqueeze(1).unsqueeze(0)
attention_scores = attention_scores.view(-1, self.num_attention_heads, dim, dim)
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
# Copied from transformers.models.swin.modeling_swin.SwinSelfOutput with Swin->ClapAudio
class ClapAudioSelfOutput(nn.Module):
def __init__(self, config, dim):
super().__init__()
self.dense = nn.Linear(dim, dim)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.swin.modeling_swin.SwinAttention with Swin->ClapAudio
class ClapAudioAttention(nn.Module):
def __init__(self, config, dim, num_heads, window_size):
super().__init__()
self.self = ClapAudioSelfAttention(config, dim, num_heads, window_size)
self.output = ClapAudioSelfOutput(config, dim)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(hidden_states, attention_mask, head_mask, output_attentions)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.swin.modeling_swin.SwinIntermediate with Swin->ClapAudio
class ClapAudioIntermediate(nn.Module):
def __init__(self, config, dim):
super().__init__()
self.dense = nn.Linear(dim, int(config.mlp_ratio * dim))
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.swin.modeling_swin.SwinOutput with Swin->ClapAudio
class ClapAudioOutput(nn.Module):
def __init__(self, config, dim):
super().__init__()
self.dense = nn.Linear(int(config.mlp_ratio * dim), dim)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.swin.modeling_swin.SwinLayer with SwinDropPath->ClapDropPath, Swin->ClapAudio
class ClapAudioLayer(nn.Module):
def __init__(self, config, dim, input_resolution, num_heads, drop_path_rate=0.0, shift_size=0):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.shift_size = shift_size
self.window_size = config.window_size
self.input_resolution = input_resolution
self.layernorm_before = nn.LayerNorm(dim, eps=config.layer_norm_eps)
self.attention = ClapAudioAttention(config, dim, num_heads, window_size=self.window_size)
self.drop_path = ClapDropPath(drop_path_rate) if drop_path_rate > 0.0 else nn.Identity()
self.layernorm_after = nn.LayerNorm(dim, eps=config.layer_norm_eps)
self.intermediate = ClapAudioIntermediate(config, dim)
self.output = ClapAudioOutput(config, dim)
def set_shift_and_window_size(self, input_resolution):
if min(input_resolution) <= self.window_size:
# if window size is larger than input resolution, we don't partition windows
self.shift_size = torch_int(0)
self.window_size = (
torch.min(torch.tensor(input_resolution)) if torch.jit.is_tracing() else min(input_resolution)
)
def get_attn_mask(self, height, width, dtype, device):
if self.shift_size > 0:
# calculate attention mask for SW-MSA
img_mask = torch.zeros((1, height, width, 1), dtype=dtype, device=device)
height_slices = (
slice(0, -self.window_size),
slice(-self.window_size, -self.shift_size),
slice(-self.shift_size, None),
)
width_slices = (
slice(0, -self.window_size),
slice(-self.window_size, -self.shift_size),
slice(-self.shift_size, None),
)
count = 0
for height_slice in height_slices:
for width_slice in width_slices:
img_mask[:, height_slice, width_slice, :] = count
count += 1
mask_windows = window_partition(img_mask, self.window_size)
mask_windows = mask_windows.view(-1, self.window_size * self.window_size)
attn_mask = mask_windows.unsqueeze(1) - mask_windows.unsqueeze(2)
attn_mask = attn_mask.masked_fill(attn_mask != 0, float(-100.0)).masked_fill(attn_mask == 0, float(0.0))
else:
attn_mask = None
return attn_mask
def maybe_pad(self, hidden_states, height, width):
pad_right = (self.window_size - width % self.window_size) % self.window_size
pad_bottom = (self.window_size - height % self.window_size) % self.window_size
pad_values = (0, 0, 0, pad_right, 0, pad_bottom)
hidden_states = nn.functional.pad(hidden_states, pad_values)
return hidden_states, pad_values
def forward(
self,
hidden_states: torch.Tensor,
input_dimensions: Tuple[int, int],
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
always_partition: Optional[bool] = False,
) -> Tuple[torch.Tensor, torch.Tensor]:
if not always_partition:
self.set_shift_and_window_size(input_dimensions)
else:
pass
height, width = input_dimensions
batch_size, _, channels = hidden_states.size()
shortcut = hidden_states
hidden_states = self.layernorm_before(hidden_states)
hidden_states = hidden_states.view(batch_size, height, width, channels)
# pad hidden_states to multiples of window size
hidden_states, pad_values = self.maybe_pad(hidden_states, height, width)
_, height_pad, width_pad, _ = hidden_states.shape
# cyclic shift
if self.shift_size > 0:
shifted_hidden_states = torch.roll(hidden_states, shifts=(-self.shift_size, -self.shift_size), dims=(1, 2))
else:
shifted_hidden_states = hidden_states
# partition windows
hidden_states_windows = window_partition(shifted_hidden_states, self.window_size)
hidden_states_windows = hidden_states_windows.view(-1, self.window_size * self.window_size, channels)
attn_mask = self.get_attn_mask(
height_pad, width_pad, dtype=hidden_states.dtype, device=hidden_states_windows.device
)
attention_outputs = self.attention(
hidden_states_windows, attn_mask, head_mask, output_attentions=output_attentions
)
attention_output = attention_outputs[0]
attention_windows = attention_output.view(-1, self.window_size, self.window_size, channels)
shifted_windows = window_reverse(attention_windows, self.window_size, height_pad, width_pad)
# reverse cyclic shift
if self.shift_size > 0:
attention_windows = torch.roll(shifted_windows, shifts=(self.shift_size, self.shift_size), dims=(1, 2))
else:
attention_windows = shifted_windows
was_padded = pad_values[3] > 0 or pad_values[5] > 0
if was_padded:
attention_windows = attention_windows[:, :height, :width, :].contiguous()
attention_windows = attention_windows.view(batch_size, height * width, channels)
hidden_states = shortcut + self.drop_path(attention_windows)
layer_output = self.layernorm_after(hidden_states)
layer_output = self.intermediate(layer_output)
layer_output = hidden_states + self.output(layer_output)
layer_outputs = (layer_output, attention_outputs[1]) if output_attentions else (layer_output,)
return layer_outputs
# Copied from transformers.models.swin.modeling_swin.SwinStage with Swin->ClapAudio
class ClapAudioStage(nn.Module):
def __init__(self, config, dim, input_resolution, depth, num_heads, drop_path, downsample):
super().__init__()
self.config = config
self.dim = dim
self.blocks = nn.ModuleList(
[
ClapAudioLayer(
config=config,
dim=dim,
input_resolution=input_resolution,
num_heads=num_heads,
drop_path_rate=drop_path[i],
shift_size=0 if (i % 2 == 0) else config.window_size // 2,
)
for i in range(depth)
]
)
# patch merging layer
if downsample is not None:
self.downsample = downsample(input_resolution, dim=dim, norm_layer=nn.LayerNorm)
else:
self.downsample = None
self.pointing = False
def forward(
self,
hidden_states: torch.Tensor,
input_dimensions: Tuple[int, int],
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
always_partition: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
height, width = input_dimensions
for i, layer_module in enumerate(self.blocks):
layer_head_mask = head_mask[i] if head_mask is not None else None
layer_outputs = layer_module(
hidden_states, input_dimensions, layer_head_mask, output_attentions, always_partition
)
hidden_states = layer_outputs[0]
hidden_states_before_downsampling = hidden_states
if self.downsample is not None:
height_downsampled, width_downsampled = (height + 1) // 2, (width + 1) // 2
output_dimensions = (height, width, height_downsampled, width_downsampled)
hidden_states = self.downsample(hidden_states_before_downsampling, input_dimensions)
else:
output_dimensions = (height, width, height, width)
stage_outputs = (hidden_states, hidden_states_before_downsampling, output_dimensions)
if output_attentions:
stage_outputs += layer_outputs[1:]
return stage_outputs
# Copied from transformers.models.swin.modeling_swin.SwinPatchMerging with Swin->ClapAudio
class ClapAudioPatchMerging(nn.Module):
"""
Patch Merging Layer.
Args:
input_resolution (`Tuple[int]`):
Resolution of input feature.
dim (`int`):
Number of input channels.
norm_layer (`nn.Module`, *optional*, defaults to `nn.LayerNorm`):
Normalization layer class.
"""
def __init__(self, input_resolution: Tuple[int], dim: int, norm_layer: nn.Module = nn.LayerNorm) -> None:
super().__init__()
self.input_resolution = input_resolution
self.dim = dim
self.reduction = nn.Linear(4 * dim, 2 * dim, bias=False)
self.norm = norm_layer(4 * dim)
def maybe_pad(self, input_feature, height, width):
should_pad = (height % 2 == 1) or (width % 2 == 1)
if should_pad:
pad_values = (0, 0, 0, width % 2, 0, height % 2)
input_feature = nn.functional.pad(input_feature, pad_values)
return input_feature
def forward(self, input_feature: torch.Tensor, input_dimensions: Tuple[int, int]) -> torch.Tensor:
height, width = input_dimensions
# `dim` is height * width
batch_size, dim, num_channels = input_feature.shape
input_feature = input_feature.view(batch_size, height, width, num_channels)
# pad input to be disible by width and height, if needed
input_feature = self.maybe_pad(input_feature, height, width)
# [batch_size, height/2, width/2, num_channels]
input_feature_0 = input_feature[:, 0::2, 0::2, :]
# [batch_size, height/2, width/2, num_channels]
input_feature_1 = input_feature[:, 1::2, 0::2, :]
# [batch_size, height/2, width/2, num_channels]
input_feature_2 = input_feature[:, 0::2, 1::2, :]
# [batch_size, height/2, width/2, num_channels]
input_feature_3 = input_feature[:, 1::2, 1::2, :]
# batch_size height/2 width/2 4*num_channels
input_feature = torch.cat([input_feature_0, input_feature_1, input_feature_2, input_feature_3], -1)
input_feature = input_feature.view(batch_size, -1, 4 * num_channels) # batch_size height/2*width/2 4*C
input_feature = self.norm(input_feature)
input_feature = self.reduction(input_feature)
return input_feature
class ClapAudioEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.num_layers = len(config.depths)
self.config = config
self.patch_embed = ClapAudioPatchEmbed(config)
self.enable_fusion = config.enable_fusion
self.patch_stride = self.patch_embed.patch_stride
self.spec_size = config.spec_size
self.freq_ratio = config.spec_size // config.num_mel_bins
self.num_features = int(config.patch_embeds_hidden_size * 2 ** (self.num_layers - 1))
drop_path_rate = [x.item() for x in torch.linspace(0, config.drop_path_rate, sum(config.depths))]
grid_size = self.patch_embed.grid_size
self.input_resolutions = [(grid_size[0] // (2**i), grid_size[1] // (2**i)) for i in range(self.num_layers)]
self.layers = nn.ModuleList(
[
ClapAudioStage(
config=config,
dim=int(config.patch_embeds_hidden_size * 2**i_layer),
input_resolution=self.input_resolutions[i_layer],
depth=config.depths[i_layer],
num_heads=config.num_attention_heads[i_layer],
drop_path=drop_path_rate[sum(config.depths[:i_layer]) : sum(config.depths[: i_layer + 1])],
downsample=ClapAudioPatchMerging if (i_layer < self.num_layers - 1) else None,
)
for i_layer in range(self.num_layers)
]
)
self.gradient_checkpointing = False
self.batch_norm = nn.BatchNorm2d(config.num_mel_bins)
self.norm = nn.LayerNorm(self.num_features)
self.depths = config.depths
self.avgpool = nn.AdaptiveAvgPool1d(1)
def reshape_mel2img(self, normalized_input_features):
"""
The input is 4 normalized log mel spectrograms. It is reshape to the common shape of images. Each channel
should represent 1 of the 4 crops of the spectrogram. For more details, refer to the [`ClapFeatureExtractor`].
"""
_, _, time_length, freq_length = normalized_input_features.shape
spec_width = int(self.spec_size * self.freq_ratio)
spec_heigth = self.spec_size // self.freq_ratio
if time_length > spec_width or freq_length > spec_heigth:
raise ValueError("the wav size should be less than or equal to the swin input size")
# to avoid bicubic zero error
if time_length < spec_width:
normalized_input_features = nn.functional.interpolate(
normalized_input_features, (spec_width, freq_length), mode="bicubic", align_corners=True
)
if freq_length < spec_heigth:
normalized_input_features = nn.functional.interpolate(
normalized_input_features, (time_length, spec_heigth), mode="bicubic", align_corners=True
)
batch, channels, time, freq = normalized_input_features.shape
# batch_size, channels, spec_width, spec_heigth --> batch_size, channels, spec_heigth * freq_ratio, spec_width // freq_ratio
normalized_input_features = normalized_input_features.reshape(
batch, channels * self.freq_ratio, time // self.freq_ratio, freq
)
normalized_input_features = normalized_input_features.permute(0, 1, 3, 2).contiguous()
normalized_input_features = normalized_input_features.reshape(
batch, channels, freq * self.freq_ratio, time // self.freq_ratio
)
return normalized_input_features
def forward(
self,
input_features,
is_longer: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
output_hidden_states_before_downsampling: Optional[bool] = False,
always_partition: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple, ClapAudioModelOutput]:
input_features = input_features.transpose(1, 3)
normalized_input_features = self.batch_norm(input_features)
normalized_input_features = normalized_input_features.transpose(1, 3)
is_longer_list_idx = None
if self.enable_fusion:
is_longer_list = is_longer.to(input_features.device)
is_longer_list_idx = torch.where(is_longer_list == 1)[0]
hidden_states = self.reshape_mel2img(normalized_input_features)
frames_num = hidden_states.shape[2]
hidden_states = self.patch_embed(hidden_states, is_longer_list_idx)
all_hidden_states = () if output_hidden_states else None
all_reshaped_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
input_dimensions = self.input_resolutions[0]
if output_hidden_states:
batch_size, _, hidden_size = hidden_states.shape
# rearrange batch_size (height width) channels -> batch_size channel height width
reshaped_hidden_state = hidden_states.view(batch_size, *input_dimensions, hidden_size)
reshaped_hidden_state = reshaped_hidden_state.permute(0, 3, 1, 2)
all_hidden_states += (hidden_states,)
all_reshaped_hidden_states += (reshaped_hidden_state,)
for i, layer_module in enumerate(self.layers):
layer_head_mask = head_mask[i] if head_mask is not None else None
input_dimensions = self.input_resolutions[i]
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__, hidden_states, input_dimensions, layer_head_mask, output_attentions
)
else:
layer_outputs = layer_module(
hidden_states, input_dimensions, layer_head_mask, output_attentions, always_partition
)
hidden_states = layer_outputs[0]
hidden_states_before_downsampling = layer_outputs[1]
output_dimensions = layer_outputs[2]
input_dimensions = (output_dimensions[-2], output_dimensions[-1])
if output_hidden_states and output_hidden_states_before_downsampling:
batch_size, _, hidden_size = hidden_states_before_downsampling.shape
# rearrange batch_size (height width) channels -> batch_size channel height width
# here we use the original (not downsampled) height and width
reshaped_hidden_state = hidden_states_before_downsampling.view(
batch_size, *(output_dimensions[0], output_dimensions[1]), hidden_size
)
reshaped_hidden_state = reshaped_hidden_state.permute(0, 3, 1, 2)
all_hidden_states += (hidden_states_before_downsampling,)
all_reshaped_hidden_states += (reshaped_hidden_state,)
elif output_hidden_states and not output_hidden_states_before_downsampling:
batch_size, _, hidden_size = hidden_states.shape
# rearrange batch_size (height width) channels -> batch_size channel height width
reshaped_hidden_state = hidden_states.view(batch_size, *input_dimensions, hidden_size)
reshaped_hidden_state = reshaped_hidden_state.permute(0, 3, 1, 2)
all_hidden_states += (hidden_states,)
all_reshaped_hidden_states += (reshaped_hidden_state,)
if output_attentions:
all_self_attentions += layer_outputs[3:]
last_hidden_state = self.norm(hidden_states)
batch_size, _, n_channels = last_hidden_state.shape
freq_shape = frames_num // (2 ** (len(self.depths) - 1)) // self.patch_stride[0]
temporal_shape = frames_num // (2 ** (len(self.depths) - 1)) // self.patch_stride[1]
last_hidden_state = (
last_hidden_state.permute(0, 2, 1).contiguous().reshape(batch_size, n_channels, freq_shape, temporal_shape)
)
batch_size, n_channels, n_frequencies, n_temp = last_hidden_state.shape
# group 2D CNN
c_freq_bin = n_frequencies // self.freq_ratio
last_hidden_state = last_hidden_state.reshape(
batch_size, n_channels, n_frequencies // c_freq_bin, c_freq_bin, n_temp
)
last_hidden_state = (
last_hidden_state.permute(0, 1, 3, 2, 4).contiguous().reshape(batch_size, n_channels, c_freq_bin, -1)
)
latent_output = self.avgpool(torch.flatten(last_hidden_state, 2))
latent_output = torch.flatten(latent_output, 1)
if not return_dict:
return tuple(
v
for v in [
last_hidden_state,
latent_output,
all_reshaped_hidden_states,
all_self_attentions,
]
if v is not None
)
return BaseModelOutputWithPooling(
last_hidden_state=last_hidden_state,
pooler_output=latent_output,
hidden_states=all_reshaped_hidden_states,
attentions=all_self_attentions,
)
CLAP_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`ClapConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
CLAP_TEXT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
CLAP_AUDIO_INPUTS_DOCSTRING = r"""
Args:
input_features (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Input audio features. This should be returnes by the [`ClapFeatureExtractor`] class that you can also
retrieve from [`AutoFeatureExtractor`]. See [`ClapFeatureExtractor.__call__`] for details.
is_longer (`torch.FloatTensor`, of shape `(batch_size, 1)`, *optional*):
Whether the audio clip is longer than `max_length`. If `True`, a feature fusion will be enabled to enhance
the features.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
CLAP_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
input_features (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Input audio features. This should be returnes by the [`ClapFeatureExtractor`] class that you can also
retrieve from [`AutoFeatureExtractor`]. See [`ClapFeatureExtractor.__call__`] for details.
return_loss (`bool`, *optional*):
Whether or not to return the contrastive loss.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class ClapProjectionLayer(nn.Module):
def __init__(self, config: Union[ClapAudioConfig, ClapTextConfig]):
super().__init__()
self.config = config
hidden_size = config.hidden_size
projection_dim = config.projection_dim
self.linear1 = nn.Linear(hidden_size, projection_dim)
self.activation = ACT2FN[config.projection_hidden_act]
self.linear2 = nn.Linear(projection_dim, projection_dim)
def forward(self, hidden_states):
hidden_states = self.linear1(hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = self.linear2(hidden_states)
return hidden_states
# Copied from transformers.models.roberta.modeling_roberta.RobertaEmbeddings with Roberta->ClapText, persistent=False->persistent=True
class ClapTextEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
# Copied from transformers.models.bert.modeling_bert.BertEmbeddings.__init__
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=True
)
self.register_buffer(
"token_type_ids", torch.zeros(self.position_ids.size(), dtype=torch.long), persistent=True
)
# End copy
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
def forward(
self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
# Copied from transformers.models.bert.modeling_bert.BertSelfAttention with Bert->ClapText
class ClapTextSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
use_cache = past_key_value is not None
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
query_length, key_length = query_layer.shape[2], key_layer.shape[2]
if use_cache:
position_ids_l = torch.tensor(key_length - 1, dtype=torch.long, device=hidden_states.device).view(
-1, 1
)
else:
position_ids_l = torch.arange(query_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(key_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in ClapTextModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertSelfOutput
class ClapTextSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
CLAP_TEXT_SELF_ATTENTION_CLASSES = {
"eager": ClapTextSelfAttention,
}
# Copied from transformers.models.bert.modeling_bert.BertAttention with Bert->ClapText,BERT->CLAP_TEXT
class ClapTextAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
self.self = CLAP_TEXT_SELF_ATTENTION_CLASSES[config._attn_implementation](
config, position_embedding_type=position_embedding_type
)
self.output = ClapTextSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate
class ClapTextIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput
class ClapTextOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLayer with Bert->ClapText
class ClapTextLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = ClapTextAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = ClapTextAttention(config, position_embedding_type="absolute")
self.intermediate = ClapTextIntermediate(config)
self.output = ClapTextOutput(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
# Copied from transformers.models.bert.modeling_bert.BertEncoder with Bert->ClapText
class ClapTextEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([ClapTextLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPastAndCrossAttentions]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler
class ClapTextPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class ClapPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = ClapConfig
base_model_prefix = "clap"
supports_gradient_checkpointing = False
def _init_weights(self, module):
"""Initialize the weights"""
factor = self.config.initializer_factor
if isinstance(module, ClapTextEmbeddings):
module.position_embeddings.weight.data.normal_(mean=0.0, std=factor * 0.02)
module.token_type_embeddings.weight.data.normal_(mean=0.0, std=factor * 0.02)
elif isinstance(module, ClapModel):
nn.init.normal_(module.logit_scale_a, std=factor * 0.02)
nn.init.normal_(module.logit_scale_t, std=factor * 0.02)
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=factor * 0.02)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, (nn.Conv2d, nn.Linear)):
in_proj_std = (self.config.hidden_size**-0.5) * ((2 * self.config.num_hidden_layers) ** -0.5) * factor
nn.init.normal_(module.weight, std=in_proj_std)
if module.bias is not None:
module.bias.data.zero_()
class ClapAudioModel(ClapPreTrainedModel):
config_class = ClapAudioConfig
main_input_name = "input_features"
def __init__(self, config: ClapAudioConfig):
super().__init__(config)
self.audio_encoder = ClapAudioEncoder(config)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> nn.Module:
return self.audio_encoder.patch_embed.proj
@add_start_docstrings_to_model_forward(CLAP_AUDIO_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutputWithPooling, config_class=ClapAudioConfig)
def forward(
self,
input_features: Optional[torch.FloatTensor] = None,
is_longer: Optional[torch.BoolTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPooling]:
r"""
Returns:
Examples:
```python
>>> from datasets import load_dataset
>>> from transformers import AutoProcessor, ClapAudioModel
>>> dataset = load_dataset("hf-internal-testing/ashraq-esc50-1-dog-example")
>>> audio_sample = dataset["train"]["audio"][0]["array"]
>>> model = ClapAudioModel.from_pretrained("laion/clap-htsat-fused")
>>> processor = AutoProcessor.from_pretrained("laion/clap-htsat-fused")
>>> inputs = processor(audios=audio_sample, return_tensors="pt")
>>> outputs = model(**inputs)
>>> last_hidden_state = outputs.last_hidden_state
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return self.audio_encoder(
input_features=input_features,
is_longer=is_longer,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
class ClapTextModel(ClapPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in *Attention is
all you need*_ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N. Gomez, Lukasz
Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
.. _*Attention is all you need*: https://arxiv.org/abs/1706.03762
"""
config_class = ClapTextConfig
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = ClapTextEmbeddings(config)
self.encoder = ClapTextEncoder(config)
self.pooler = ClapTextPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
if token_type_ids is None:
if hasattr(self.embeddings, "token_type_ids"):
buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings(CLAP_START_DOCSTRING)
class ClapModel(ClapPreTrainedModel):
config_class = ClapConfig
def __init__(self, config: ClapConfig):
super().__init__(config)
if not isinstance(config.text_config, ClapTextConfig):
raise TypeError(
"config.text_config is expected to be of type ClapTextConfig but is of type"
f" {type(config.text_config)}."
)
if not isinstance(config.audio_config, ClapAudioConfig):
raise TypeError(
"config.audio_config is expected to be of type ClapAudioConfig but is of type"
f" {type(config.audio_config)}."
)
text_config = config.text_config
audio_config = config.audio_config
self.logit_scale_a = nn.Parameter(torch.tensor(math.log(config.logit_scale_init_value)))
self.logit_scale_t = nn.Parameter(torch.tensor(math.log(config.logit_scale_init_value)))
self.projection_dim = config.projection_dim
self.text_model = ClapTextModel(text_config)
self.text_projection = ClapProjectionLayer(text_config)
self.audio_model = ClapAudioModel(audio_config)
self.audio_projection = ClapProjectionLayer(audio_config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(CLAP_TEXT_INPUTS_DOCSTRING)
def get_text_features(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> torch.FloatTensor:
r"""
Returns:
text_features (`torch.FloatTensor` of shape `(batch_size, output_dim`): The text embeddings obtained by
applying the projection layer to the pooled output of [`ClapTextModel`].
Examples:
```python
>>> from transformers import AutoTokenizer, ClapModel
>>> model = ClapModel.from_pretrained("laion/clap-htsat-unfused")
>>> tokenizer = AutoTokenizer.from_pretrained("laion/clap-htsat-unfused")
>>> inputs = tokenizer(["the sound of a cat", "the sound of a dog"], padding=True, return_tensors="pt")
>>> text_features = model.get_text_features(**inputs)
```"""
# Use CLAP model's config for some fields (if specified) instead of those of audio & text components.
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = text_outputs[1] if return_dict is not None else text_outputs.pooler_output
text_features = self.text_projection(pooled_output)
text_features = F.normalize(text_features, dim=-1)
return text_features
@add_start_docstrings_to_model_forward(CLAP_AUDIO_INPUTS_DOCSTRING)
def get_audio_features(
self,
input_features: Optional[torch.Tensor] = None,
is_longer: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> torch.FloatTensor:
r"""
Returns:
audio_features (`torch.FloatTensor` of shape `(batch_size, output_dim`): The audio embeddings obtained by
applying the projection layer to the pooled output of [`ClapAudioModel`].
Examples:
```python
>>> from transformers import AutoFeatureExtractor, ClapModel
>>> import torch
>>> model = ClapModel.from_pretrained("laion/clap-htsat-unfused")
>>> feature_extractor = AutoFeatureExtractor.from_pretrained("laion/clap-htsat-unfused")
>>> random_audio = torch.rand((16_000))
>>> inputs = feature_extractor(random_audio, return_tensors="pt")
>>> audio_features = model.get_audio_features(**inputs)
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
audio_outputs = self.audio_model(
input_features=input_features,
is_longer=is_longer,
return_dict=return_dict,
)
pooled_output = audio_outputs[1] if not return_dict else audio_outputs.pooler_output
audio_features = self.audio_projection(pooled_output)
audio_features = F.normalize(audio_features, dim=-1)
return audio_features
@add_start_docstrings_to_model_forward(CLAP_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ClapOutput, config_class=ClapConfig)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
input_features: Optional[torch.FloatTensor] = None,
is_longer: Optional[torch.BoolTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
return_loss: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, ClapOutput]:
r"""
Returns:
Examples:
```python
>>> from datasets import load_dataset
>>> from transformers import AutoProcessor, ClapModel
>>> dataset = load_dataset("hf-internal-testing/ashraq-esc50-1-dog-example")
>>> audio_sample = dataset["train"]["audio"][0]["array"]
>>> model = ClapModel.from_pretrained("laion/clap-htsat-unfused")
>>> processor = AutoProcessor.from_pretrained("laion/clap-htsat-unfused")
>>> input_text = ["Sound of a dog", "Sound of vaccum cleaner"]
>>> inputs = processor(text=input_text, audios=audio_sample, return_tensors="pt", padding=True)
>>> outputs = model(**inputs)
>>> logits_per_audio = outputs.logits_per_audio # this is the audio-text similarity score
>>> probs = logits_per_audio.softmax(dim=-1) # we can take the softmax to get the label probabilities
```"""
# Use CLAP model's config for some fields (if specified) instead of those of audio & text components.
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
audio_outputs = self.audio_model(
input_features=input_features,
is_longer=is_longer,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
audio_embeds = audio_outputs[1] if not return_dict else audio_outputs.pooler_output
audio_embeds = self.audio_projection(audio_embeds)
text_embeds = text_outputs[1] if not return_dict else text_outputs.pooler_output
text_embeds = self.text_projection(text_embeds)
# normalized features
audio_embeds = audio_embeds / audio_embeds.norm(p=2, dim=-1, keepdim=True)
text_embeds = text_embeds / text_embeds.norm(p=2, dim=-1, keepdim=True)
# cosine similarity as logits
logit_scale_text = self.logit_scale_t.exp()
logit_scale_audio = self.logit_scale_a.exp()
logits_per_text = torch.matmul(text_embeds, audio_embeds.t()) * logit_scale_text
logits_per_audio = torch.matmul(audio_embeds, text_embeds.t()) * logit_scale_audio
loss = None
if return_loss:
caption_loss = contrastive_loss(logits_per_text)
audio_loss = contrastive_loss(logits_per_audio.t())
loss = (caption_loss + audio_loss) / 2.0
if not return_dict:
output = (logits_per_audio, logits_per_text, text_embeds, audio_embeds, text_outputs, audio_outputs)
return ((loss,) + output) if loss is not None else output
return ClapOutput(
loss=loss,
logits_per_audio=logits_per_audio,
logits_per_text=logits_per_text,
text_embeds=text_embeds,
audio_embeds=audio_embeds,
text_model_output=text_outputs,
audio_model_output=audio_outputs,
)
@add_start_docstrings(
"""
CLAP Text Model with a projection layer on top (a linear layer on top of the pooled output).
""",
CLAP_START_DOCSTRING,
)
class ClapTextModelWithProjection(ClapPreTrainedModel):
config_class = ClapTextConfig
def __init__(self, config: ClapTextConfig):
super().__init__(config)
self.text_model = ClapTextModel(config)
self.text_projection = ClapProjectionLayer(config)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> nn.Module:
return self.text_model.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.text_model.embeddings.word_embeddings = value
@add_start_docstrings_to_model_forward(CLAP_TEXT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ClapTextModelOutput, config_class=ClapTextConfig)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, ClapTextModelOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import AutoTokenizer, ClapTextModelWithProjection
>>> model = ClapTextModelWithProjection.from_pretrained("laion/clap-htsat-unfused")
>>> tokenizer = AutoTokenizer.from_pretrained("laion/clap-htsat-unfused")
>>> inputs = tokenizer(["a sound of a cat", "a sound of a dog"], padding=True, return_tensors="pt")
>>> outputs = model(**inputs)
>>> text_embeds = outputs.text_embeds
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = text_outputs[1] if not return_dict else text_outputs.pooler_output
text_embeds = self.text_projection(pooled_output)
if not return_dict:
outputs = (text_embeds, text_outputs[0]) + text_outputs[2:]
return tuple(output for output in outputs if output is not None)
return ClapTextModelOutput(
text_embeds=text_embeds,
last_hidden_state=text_outputs.last_hidden_state,
hidden_states=text_outputs.hidden_states,
attentions=text_outputs.attentions,
)
@add_start_docstrings(
"""
CLAP Audio Model with a projection layer on top (a linear layer on top of the pooled output).
""",
CLAP_START_DOCSTRING,
)
class ClapAudioModelWithProjection(ClapPreTrainedModel):
config_class = ClapAudioConfig
main_input_name = "input_features"
def __init__(self, config: ClapAudioConfig):
super().__init__(config)
self.audio_model = ClapAudioModel(config)
self.audio_projection = ClapProjectionLayer(config)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> nn.Module:
return self.audio_model.audio_encoder.patch_embed.proj
@add_start_docstrings_to_model_forward(CLAP_AUDIO_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ClapAudioModelOutput, config_class=ClapAudioConfig)
def forward(
self,
input_features: Optional[torch.FloatTensor] = None,
is_longer: Optional[torch.BoolTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, ClapAudioModelOutput]:
r"""
Returns:
Examples:
```python
>>> from datasets import load_dataset
>>> from transformers import ClapAudioModelWithProjection, ClapProcessor
>>> model = ClapAudioModelWithProjection.from_pretrained("laion/clap-htsat-fused")
>>> processor = ClapProcessor.from_pretrained("laion/clap-htsat-fused")
>>> dataset = load_dataset("hf-internal-testing/ashraq-esc50-1-dog-example")
>>> audio_sample = dataset["train"]["audio"][0]["array"]
>>> inputs = processor(audios=audio_sample, return_tensors="pt")
>>> outputs = model(**inputs)
>>> audio_embeds = outputs.audio_embeds
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
audio_outputs = self.audio_model(
input_features=input_features,
is_longer=is_longer,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = audio_outputs[1] if not return_dict else audio_outputs.pooler_output
audio_embeds = self.audio_projection(pooled_output)
if not return_dict:
outputs = (audio_embeds, audio_outputs[0]) + audio_outputs[2:]
return tuple(output for output in outputs if output is not None)
return ClapAudioModelOutput(
audio_embeds=audio_embeds,
last_hidden_state=audio_outputs.last_hidden_state,
attentions=audio_outputs.attentions,
hidden_states=audio_outputs.hidden_states,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/clap/__init__.py | # Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {
"configuration_clap": [
"ClapAudioConfig",
"ClapConfig",
"ClapTextConfig",
],
"processing_clap": ["ClapProcessor"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_clap"] = [
"ClapModel",
"ClapPreTrainedModel",
"ClapTextModel",
"ClapTextModelWithProjection",
"ClapAudioModel",
"ClapAudioModelWithProjection",
]
_import_structure["feature_extraction_clap"] = ["ClapFeatureExtractor"]
if TYPE_CHECKING:
from .configuration_clap import (
ClapAudioConfig,
ClapConfig,
ClapTextConfig,
)
from .processing_clap import ClapProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_clap import ClapFeatureExtractor
from .modeling_clap import (
ClapAudioModel,
ClapAudioModelWithProjection,
ClapModel,
ClapPreTrainedModel,
ClapTextModel,
ClapTextModelWithProjection,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/clap/feature_extraction_clap.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for CLAP."""
import copy
from typing import Any, Dict, List, Optional, Union
import numpy as np
import torch
from ...audio_utils import mel_filter_bank, spectrogram, window_function
from ...feature_extraction_sequence_utils import SequenceFeatureExtractor
from ...feature_extraction_utils import BatchFeature
from ...utils import TensorType, logging
logger = logging.get_logger(__name__)
class ClapFeatureExtractor(SequenceFeatureExtractor):
r"""
Constructs a CLAP feature extractor.
This feature extractor inherits from [`~feature_extraction_sequence_utils.SequenceFeatureExtractor`] which contains
most of the main methods. Users should refer to this superclass for more information regarding those methods.
This class extracts mel-filter bank features from raw speech using a custom numpy implementation of the *Short Time
Fourier Transform* (STFT) which should match pytorch's `torch.stft` equivalent.
Args:
feature_size (`int`, *optional*, defaults to 64):
The feature dimension of the extracted Mel spectrograms. This corresponds to the number of mel filters
(`n_mels`).
sampling_rate (`int`, *optional*, defaults to 48000):
The sampling rate at which the audio files should be digitalized expressed in hertz (Hz). This only serves
to warn users if the audio fed to the feature extractor does not have the same sampling rate.
hop_length (`int`,*optional*, defaults to 480):
Length of the overlaping windows for the STFT used to obtain the Mel Spectrogram. The audio will be split
in smaller `frames` with a step of `hop_length` between each frame.
max_length_s (`int`, *optional*, defaults to 10):
The maximum input length of the model in seconds. This is used to pad the audio.
fft_window_size (`int`, *optional*, defaults to 1024):
Size of the window (in samples) on which the Fourier transform is applied. This controls the frequency
resolution of the spectrogram. 400 means that the fourrier transform is computed on windows of 400 samples.
padding_value (`float`, *optional*, defaults to 0.0):
Padding value used to pad the audio. Should correspond to silences.
return_attention_mask (`bool`, *optional*, defaults to `False`):
Whether or not the model should return the attention masks coresponding to the input.
frequency_min (`float`, *optional*, defaults to 0):
The lowest frequency of interest. The STFT will not be computed for values below this.
frequency_max (`float`, *optional*, defaults to 14000):
The highest frequency of interest. The STFT will not be computed for values above this.
top_db (`float`, *optional*):
The highest decibel value used to convert the mel spectrogram to the log scale. For more details see the
`audio_utils.power_to_db` function
truncation (`str`, *optional*, defaults to `"fusion"`):
Truncation pattern for long audio inputs. Two patterns are available:
- `fusion` will use `_random_mel_fusion`, which stacks 3 random crops from the mel spectrogram and a
downsampled version of the entire mel spectrogram.
If `config.fusion` is set to True, shorter audios also need to to return 4 mels, which will just be a copy
of the original mel obtained from the padded audio.
- `rand_trunc` will select a random crop of the mel spectrogram.
padding (`str`, *optional*, defaults to `"repeatpad"`):
Padding pattern for shorter audio inputs. Three patterns were originally implemented:
- `repeatpad`: the audio is repeated, and then padded to fit the `max_length`.
- `repeat`: the audio is repeated and then cut to fit the `max_length`
- `pad`: the audio is padded.
"""
model_input_names = ["input_features", "is_longer"]
def __init__(
self,
feature_size=64,
sampling_rate=48_000,
hop_length=480,
max_length_s=10,
fft_window_size=1024,
padding_value=0.0,
return_attention_mask=False, # pad inputs to max length with silence token (zero) and no attention mask
frequency_min: float = 0,
frequency_max: float = 14_000,
top_db: int = None,
truncation: str = "fusion",
padding: str = "repeatpad",
**kwargs,
):
super().__init__(
feature_size=feature_size,
sampling_rate=sampling_rate,
padding_value=padding_value,
return_attention_mask=return_attention_mask,
**kwargs,
)
self.top_db = top_db
self.truncation = truncation
self.padding = padding
self.fft_window_size = fft_window_size
self.nb_frequency_bins = (fft_window_size >> 1) + 1
self.hop_length = hop_length
self.max_length_s = max_length_s
self.nb_max_samples = max_length_s * sampling_rate
self.sampling_rate = sampling_rate
self.frequency_min = frequency_min
self.frequency_max = frequency_max
self.mel_filters = mel_filter_bank(
num_frequency_bins=self.nb_frequency_bins,
num_mel_filters=feature_size,
min_frequency=frequency_min,
max_frequency=frequency_max,
sampling_rate=sampling_rate,
norm=None,
mel_scale="htk",
)
self.mel_filters_slaney = mel_filter_bank(
num_frequency_bins=self.nb_frequency_bins,
num_mel_filters=feature_size,
min_frequency=frequency_min,
max_frequency=frequency_max,
sampling_rate=sampling_rate,
norm="slaney",
mel_scale="slaney",
)
def to_dict(self) -> Dict[str, Any]:
"""
Serializes this instance to a Python dictionary.
Returns:
`Dict[str, Any]`: Dictionary of all the attributes that make up this configuration instance, excpet for the
mel filter banks, which do not need to be saved or printed as they are too long.
"""
output = copy.deepcopy(self.__dict__)
output["feature_extractor_type"] = self.__class__.__name__
if "mel_filters" in output:
del output["mel_filters"]
if "mel_filters_slaney" in output:
del output["mel_filters_slaney"]
return output
def _np_extract_fbank_features(self, waveform: np.array, mel_filters: Optional[np.array] = None) -> np.ndarray:
"""
Compute the log-mel spectrogram of the provided `waveform` using the Hann window. In CLAP, two different filter
banks are used depending on the truncation pattern:
- `self.mel_filters`: they correspond to the default parameters of `torchaudio` which can be obtained from
calling `torchaudio.transforms.MelSpectrogram().mel_scale.fb`. These filters are used when `truncation`
is set to `"fusion"`.
- `self.mel_filteres_slaney` : they correspond to the default parameters of `librosa` which used
`librosa.filters.mel` when computing the mel spectrogram. These filters were only used in the original
implementation when the truncation mode is not `"fusion"`.
"""
log_mel_spectrogram = spectrogram(
waveform,
window_function(self.fft_window_size, "hann"),
frame_length=self.fft_window_size,
hop_length=self.hop_length,
power=2.0,
mel_filters=mel_filters,
log_mel="dB",
)
return log_mel_spectrogram.T
def _random_mel_fusion(self, mel, total_frames, chunk_frames):
ranges = np.array_split(list(range(0, total_frames - chunk_frames + 1)), 3)
if len(ranges[1]) == 0:
# if the audio is too short, we just use the first chunk
ranges[1] = [0]
if len(ranges[2]) == 0:
# if the audio is too short, we just use the first chunk
ranges[2] = [0]
# randomly choose index for each part
idx_front = np.random.choice(ranges[0])
idx_middle = np.random.choice(ranges[1])
idx_back = np.random.choice(ranges[2])
mel_chunk_front = mel[idx_front : idx_front + chunk_frames, :]
mel_chunk_middle = mel[idx_middle : idx_middle + chunk_frames, :]
mel_chunk_back = mel[idx_back : idx_back + chunk_frames, :]
mel = torch.tensor(mel[None, None, :])
mel_shrink = torch.nn.functional.interpolate(
mel, size=[chunk_frames, 64], mode="bilinear", align_corners=False
)
mel_shrink = mel_shrink[0][0].numpy()
mel_fusion = np.stack([mel_shrink, mel_chunk_front, mel_chunk_middle, mel_chunk_back], axis=0)
return mel_fusion
def _get_input_mel(self, waveform: np.array, max_length, truncation, padding) -> np.array:
"""
Extracts the mel spectrogram and prepares it for the mode based on the `truncation` and `padding` arguments.
Four different path are possible:
- `truncation="fusion"` and the length of the waveform is greater than the max length: the mel spectrogram
will be computed on the entire audio. 3 random crops and a dowsampled version of the full mel spectrogram
are then stacked together. They will later be used for `feature_fusion`.
- `truncation="rand_trunc"` and the length of the waveform is smaller than the max length: the audio is
padded based on `padding`.
- `truncation="fusion"` and the length of the waveform is smaller than the max length: the audio is padded
based on `padding`, and is repeated `4` times.
- `truncation="rand_trunc"` and the length of the waveform is greater than the max length: the mel
spectrogram will be computed on a random crop of the waveform.
"""
if waveform.shape[0] > max_length:
if truncation == "rand_trunc":
longer = True
# random crop to max_length (for compatibility) -> this should be handled by self.pad
overflow = len(waveform) - max_length
idx = np.random.randint(0, overflow + 1)
waveform = waveform[idx : idx + max_length]
input_mel = self._np_extract_fbank_features(waveform, self.mel_filters_slaney)[None, :]
elif truncation == "fusion":
mel = self._np_extract_fbank_features(waveform, self.mel_filters)
chunk_frames = max_length // self.hop_length + 1 # the +1 related to how the spectrogram is computed
total_frames = mel.shape[0]
if chunk_frames == total_frames:
# there is a corner case where the audio length is larger than max_length but smaller than max_length+hop_length.
# In this case, we just use the whole audio.
input_mel = np.stack([mel, mel, mel, mel], axis=0)
longer = False
else:
input_mel = self._random_mel_fusion(mel, total_frames, chunk_frames)
longer = True
else:
raise NotImplementedError(f"data_truncating {truncation} not implemented")
else:
longer = False
# only use repeat as a new possible value for padding. you repeat the audio before applying the usual max_length padding
if waveform.shape[0] < max_length:
if padding == "repeat":
n_repeat = int(max_length / len(waveform))
waveform = np.tile(waveform, n_repeat + 1)[:max_length]
if padding == "repeatpad":
n_repeat = int(max_length / len(waveform))
waveform = np.tile(waveform, n_repeat)
waveform = np.pad(waveform, (0, max_length - waveform.shape[0]), mode="constant", constant_values=0)
if truncation == "fusion":
input_mel = self._np_extract_fbank_features(waveform, self.mel_filters)
input_mel = np.stack([input_mel, input_mel, input_mel, input_mel], axis=0)
else:
input_mel = self._np_extract_fbank_features(waveform, self.mel_filters_slaney)[None, :]
return input_mel, longer
def __call__(
self,
raw_speech: Union[np.ndarray, List[float], List[np.ndarray], List[List[float]]],
truncation: str = None,
padding: Optional[str] = None,
max_length: Optional[int] = None,
sampling_rate: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
**kwargs,
) -> BatchFeature:
"""
Main method to featurize and prepare for the model one or several sequence(s).
Args:
raw_speech (`np.ndarray`, `List[float]`, `List[np.ndarray]`, `List[List[float]]`):
The sequence or batch of sequences to be padded. Each sequence can be a numpy array, a list of float
values, a list of numpy arrays or a list of list of float values. Must be mono channel audio, not
stereo, i.e. single float per timestep.
truncation (`str`, *optional*):
Truncation pattern for long audio inputs. Two patterns are available:
- `fusion` will use `_random_mel_fusion`, which stacks 3 random crops from the mel spectrogram and
a downsampled version of the entire mel spectrogram.
If `config.fusion` is set to True, shorter audios also need to to return 4 mels, which will just be a
copy of the original mel obtained from the padded audio.
- `rand_trunc` will select a random crop of the mel spectrogram.
padding (`str`, *optional*):
Padding pattern for shorter audio inputs. Three patterns were originally implemented:
- `repeatpad`: the audio is repeated, and then padded to fit the `max_length`.
- `repeat`: the audio is repeated and then cut to fit the `max_length`
- `pad`: the audio is padded.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.np.array` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
sampling_rate (`int`, *optional*):
The sampling rate at which the `raw_speech` input was sampled. It is strongly recommended to pass
`sampling_rate` at the forward call to prevent silent errors and allow automatic speech recognition
pipeline.
"""
truncation = truncation if truncation is not None else self.truncation
padding = padding if padding else self.padding
if sampling_rate is not None:
if sampling_rate != self.sampling_rate:
raise ValueError(
f"The model corresponding to this feature extractor: {self.__class__.__name__} was trained using a"
f" sampling rate of {self.sampling_rate}. Please make sure that the provided `raw_speech` input"
f" was sampled with {self.sampling_rate} and not {sampling_rate}."
)
else:
logger.warning(
"It is strongly recommended to pass the `sampling_rate` argument to this function. "
"Failing to do so can result in silent errors that might be hard to debug."
)
is_batched_numpy = isinstance(raw_speech, np.ndarray) and len(raw_speech.shape) > 1
if is_batched_numpy and len(raw_speech.shape) > 2:
raise ValueError(f"Only mono-channel audio is supported for input to {self}")
is_batched = is_batched_numpy or (
isinstance(raw_speech, (list, tuple)) and (isinstance(raw_speech[0], (np.ndarray, tuple, list)))
)
if is_batched:
raw_speech = [np.asarray(speech, dtype=np.float64) for speech in raw_speech]
elif not is_batched and not isinstance(raw_speech, np.ndarray):
raw_speech = np.asarray(raw_speech, dtype=np.float64)
elif isinstance(raw_speech, np.ndarray) and raw_speech.dtype is np.dtype(np.float64):
raw_speech = raw_speech.astype(np.float64)
# always return batch
if not is_batched:
raw_speech = [np.asarray(raw_speech)]
# convert to mel spectrogram, truncate and pad if needed.
padded_inputs = [
self._get_input_mel(waveform, max_length if max_length else self.nb_max_samples, truncation, padding)
for waveform in raw_speech
]
input_mel = []
is_longer = []
for mel, longer in padded_inputs:
input_mel.append(mel)
is_longer.append(longer)
if truncation == "fusion" and sum(is_longer) == 0:
# if no audio is longer than 10s, then randomly select one audio to be longer
rand_idx = np.random.randint(0, len(input_mel))
is_longer[rand_idx] = True
if isinstance(input_mel[0], List):
input_mel = [np.asarray(feature, dtype=np.float64) for feature in input_mel]
# is_longer is a list of bool
is_longer = [[longer] for longer in is_longer]
input_features = {"input_features": input_mel, "is_longer": is_longer}
input_features = BatchFeature(input_features)
if return_tensors is not None:
input_features = input_features.convert_to_tensors(return_tensors)
return input_features
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/timm_backbone/modeling_timm_backbone.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Optional, Tuple, Union
import torch
from ...modeling_outputs import BackboneOutput
from ...modeling_utils import PreTrainedModel
from ...utils import is_timm_available, is_torch_available, requires_backends
from ...utils.backbone_utils import BackboneMixin
from .configuration_timm_backbone import TimmBackboneConfig
if is_timm_available():
import timm
if is_torch_available():
from torch import Tensor
class TimmBackbone(PreTrainedModel, BackboneMixin):
"""
Wrapper class for timm models to be used as backbones. This enables using the timm models interchangeably with the
other models in the library keeping the same API.
"""
main_input_name = "pixel_values"
supports_gradient_checkpointing = False
config_class = TimmBackboneConfig
def __init__(self, config, **kwargs):
requires_backends(self, "timm")
super().__init__(config)
self.config = config
if config.backbone is None:
raise ValueError("backbone is not set in the config. Please set it to a timm model name.")
if hasattr(config, "out_features") and config.out_features is not None:
raise ValueError("out_features is not supported by TimmBackbone. Please use out_indices instead.")
pretrained = getattr(config, "use_pretrained_backbone", None)
if pretrained is None:
raise ValueError("use_pretrained_backbone is not set in the config. Please set it to True or False.")
# We just take the final layer by default. This matches the default for the transformers models.
out_indices = config.out_indices if getattr(config, "out_indices", None) is not None else (-1,)
in_chans = kwargs.pop("in_chans", config.num_channels)
self._backbone = timm.create_model(
config.backbone,
pretrained=pretrained,
# This is currently not possible for transformer architectures.
features_only=config.features_only,
in_chans=in_chans,
out_indices=out_indices,
**kwargs,
)
# Converts all `BatchNorm2d` and `SyncBatchNorm` or `BatchNormAct2d` and `SyncBatchNormAct2d` layers of provided module into `FrozenBatchNorm2d` or `FrozenBatchNormAct2d` respectively
if getattr(config, "freeze_batch_norm_2d", False):
self.freeze_batch_norm_2d()
# These are used to control the output of the model when called. If output_hidden_states is True, then
# return_layers is modified to include all layers.
self._return_layers = {
layer["module"]: str(layer["index"]) for layer in self._backbone.feature_info.get_dicts()
}
self._all_layers = {layer["module"]: str(i) for i, layer in enumerate(self._backbone.feature_info.info)}
super()._init_backbone(config)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, *model_args, **kwargs):
requires_backends(cls, ["vision", "timm"])
from ...models.timm_backbone import TimmBackboneConfig
config = kwargs.pop("config", TimmBackboneConfig())
use_timm = kwargs.pop("use_timm_backbone", True)
if not use_timm:
raise ValueError("use_timm_backbone must be True for timm backbones")
num_channels = kwargs.pop("num_channels", config.num_channels)
features_only = kwargs.pop("features_only", config.features_only)
use_pretrained_backbone = kwargs.pop("use_pretrained_backbone", config.use_pretrained_backbone)
out_indices = kwargs.pop("out_indices", config.out_indices)
config = TimmBackboneConfig(
backbone=pretrained_model_name_or_path,
num_channels=num_channels,
features_only=features_only,
use_pretrained_backbone=use_pretrained_backbone,
out_indices=out_indices,
)
return super()._from_config(config, **kwargs)
def freeze_batch_norm_2d(self):
timm.utils.model.freeze_batch_norm_2d(self._backbone)
def unfreeze_batch_norm_2d(self):
timm.utils.model.unfreeze_batch_norm_2d(self._backbone)
def _init_weights(self, module):
"""
Empty init weights function to ensure compatibility of the class in the library.
"""
pass
def forward(
self,
pixel_values: torch.FloatTensor,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**kwargs,
) -> Union[BackboneOutput, Tuple[Tensor, ...]]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
if output_attentions:
raise ValueError("Cannot output attentions for timm backbones at the moment")
if output_hidden_states:
# We modify the return layers to include all the stages of the backbone
self._backbone.return_layers = self._all_layers
hidden_states = self._backbone(pixel_values, **kwargs)
self._backbone.return_layers = self._return_layers
feature_maps = tuple(hidden_states[i] for i in self.out_indices)
else:
feature_maps = self._backbone(pixel_values, **kwargs)
hidden_states = None
feature_maps = tuple(feature_maps)
hidden_states = tuple(hidden_states) if hidden_states is not None else None
if not return_dict:
output = (feature_maps,)
if output_hidden_states:
output = output + (hidden_states,)
return output
return BackboneOutput(feature_maps=feature_maps, hidden_states=hidden_states, attentions=None)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/timm_backbone/__init__.py | # flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {"configuration_timm_backbone": ["TimmBackboneConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_timm_backbone"] = ["TimmBackbone"]
if TYPE_CHECKING:
from .configuration_timm_backbone import TimmBackboneConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_timm_backbone import TimmBackbone
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/timm_backbone/configuration_timm_backbone.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Configuration for Backbone models"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class TimmBackboneConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration for a timm backbone [`TimmBackbone`].
It is used to instantiate a timm backbone model according to the specified arguments, defining the model.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
backbone (`str`, *optional*):
The timm checkpoint to load.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
features_only (`bool`, *optional*, defaults to `True`):
Whether to output only the features or also the logits.
use_pretrained_backbone (`bool`, *optional*, defaults to `True`):
Whether to use a pretrained backbone.
out_indices (`List[int]`, *optional*):
If used as backbone, list of indices of features to output. Can be any of 0, 1, 2, etc. (depending on how
many stages the model has). Will default to the last stage if unset.
freeze_batch_norm_2d (`bool`, *optional*, defaults to `False`):
Converts all `BatchNorm2d` and `SyncBatchNorm` layers of provided module into `FrozenBatchNorm2d`.
Example:
```python
>>> from transformers import TimmBackboneConfig, TimmBackbone
>>> # Initializing a timm backbone
>>> configuration = TimmBackboneConfig("resnet50")
>>> # Initializing a model from the configuration
>>> model = TimmBackbone(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```
"""
model_type = "timm_backbone"
def __init__(
self,
backbone=None,
num_channels=3,
features_only=True,
use_pretrained_backbone=True,
out_indices=None,
freeze_batch_norm_2d=False,
**kwargs,
):
super().__init__(**kwargs)
self.backbone = backbone
self.num_channels = num_channels
self.features_only = features_only
self.use_pretrained_backbone = use_pretrained_backbone
self.use_timm_backbone = True
self.out_indices = out_indices if out_indices is not None else [-1]
self.freeze_batch_norm_2d = freeze_batch_norm_2d
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ibert/configuration_ibert.py | # coding=utf-8
# Copyright 2021 The I-BERT Authors (Sehoon Kim, Amir Gholami, Zhewei Yao,
# Michael Mahoney, Kurt Keutzer - UC Berkeley) and The HuggingFace Inc. team.
# Copyright (c) 20121, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""I-BERT configuration"""
from collections import OrderedDict
from typing import Mapping
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class IBertConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`IBertModel`]. It is used to instantiate a I-BERT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the IBERT
[kssteven/ibert-roberta-base](https://huggingface.co/kssteven/ibert-roberta-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the I-BERT model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`IBertModel`]
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`IBertModel`]
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
quant_mode (`bool`, *optional*, defaults to `False`):
Whether to quantize the model or not.
force_dequant (`str`, *optional*, defaults to `"none"`):
Force dequantize specific nonlinear layer. Dequatized layers are then executed with full precision.
`"none"`, `"gelu"`, `"softmax"`, `"layernorm"` and `"nonlinear"` are supported. As deafult, it is set as
`"none"`, which does not dequantize any layers. Please specify `"gelu"`, `"softmax"`, or `"layernorm"` to
dequantize GELU, Softmax, or LayerNorm, respectively. `"nonlinear"` will dequantize all nonlinear layers,
i.e., GELU, Softmax, and LayerNorm.
"""
model_type = "ibert"
def __init__(
self,
vocab_size=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
layer_norm_eps=1e-12,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
position_embedding_type="absolute",
quant_mode=False,
force_dequant="none",
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.quant_mode = quant_mode
self.force_dequant = force_dequant
class IBertOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
return OrderedDict(
[
("input_ids", dynamic_axis),
("attention_mask", dynamic_axis),
]
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ibert/quant_modules.py | # coding=utf-8
# Copyright 2021 The I-BERT Authors (Sehoon Kim, Amir Gholami, Zhewei Yao,
# Michael Mahoney, Kurt Keutzer - UC Berkeley) and The HuggingFace Inc. team.
# Copyright (c) 20121, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import decimal
import numpy as np
import torch
from torch import nn
from torch.autograd import Function
from ...utils import logging
logger = logging.get_logger(__name__)
class QuantEmbedding(nn.Module):
"""
Quantized version of `torch.nn.Embedding`. Adds quantization-specific arguments on top of `torch.nn.Embedding`.
Args:
weight_bit (`int`, *optional*, defaults to `8`):
Bitwidth for the quantized weight.
momentum (`float`, *optional*, defaults to `0.95`):
Momentum for updating the activation quantization range.
quant_mode (`bool`, *optional*, defaults to `False`):
Whether or not the layer is quantized.
"""
def __init__(
self,
num_embeddings,
embedding_dim,
padding_idx=None,
max_norm=None,
norm_type=2.0,
scale_grad_by_freq=False,
sparse=False,
_weight=None,
weight_bit=8,
momentum=0.95,
quant_mode=False,
):
super().__init__()
self.num_ = num_embeddings
self.dim = embedding_dim
self.padding_idx = padding_idx
self.max_norm = max_norm
self.norm_type = norm_type
self.scale_grad_by_freq = scale_grad_by_freq
self.sparse = sparse
self.weight = nn.Parameter(torch.zeros([num_embeddings, embedding_dim]))
self.register_buffer("weight_scaling_factor", torch.zeros(1))
self.register_buffer("weight_integer", torch.zeros_like(self.weight))
self.weight_bit = weight_bit
self.momentum = momentum
self.quant_mode = quant_mode
self.percentile_mode = False
self.weight_function = SymmetricQuantFunction.apply
def forward(self, x, positions=None, incremental_state=None):
if not self.quant_mode:
return (
nn.functional.embedding(
x,
self.weight,
self.padding_idx,
self.max_norm,
self.norm_type,
self.scale_grad_by_freq,
self.sparse,
),
None,
)
w = self.weight
w_transform = w.data.detach()
w_min = w_transform.min().expand(1)
w_max = w_transform.max().expand(1)
self.weight_scaling_factor = symmetric_linear_quantization_params(self.weight_bit, w_min, w_max, False)
self.weight_integer = self.weight_function(
self.weight, self.weight_bit, self.percentile_mode, self.weight_scaling_factor
)
emb_int = nn.functional.embedding(
x,
self.weight_integer,
self.padding_idx,
self.max_norm,
self.norm_type,
self.scale_grad_by_freq,
self.sparse,
)
return emb_int * self.weight_scaling_factor, self.weight_scaling_factor
class QuantAct(nn.Module):
"""
Quantizes the given activation.
Args:
activation_bit (`int`):
Bitwidth for the quantized activation.
act_range_momentum (`float`, *optional*, defaults to `0.95`):
Momentum for updating the activation quantization range.
per_channel (`bool`, *optional*, defaults to `False`):
Whether to or not use channel-wise quantization.
channel_len (`int`, *optional*):
Specify the channel length when set the *per_channel* True.
quant_mode (`bool`, *optional*, defaults to `False`):
Whether or not the layer is quantized.
"""
def __init__(self, activation_bit, act_range_momentum=0.95, per_channel=False, channel_len=None, quant_mode=False):
super().__init__()
self.activation_bit = activation_bit
self.act_range_momentum = act_range_momentum
self.quant_mode = quant_mode
self.per_channel = per_channel
self.percentile = False
self.act_function = SymmetricQuantFunction.apply
if not self.per_channel:
self.register_buffer("x_min", torch.zeros(1))
self.register_buffer("x_max", torch.zeros(1))
self.register_buffer("act_scaling_factor", torch.zeros(1))
self.x_min -= 1e-5
self.x_max += 1e-5
else:
raise NotImplementedError("per-channel mode is not currently supported for activation.")
def __repr__(self):
return (
f"{self.__class__.__name__}(activation_bit={self.activation_bit}, "
f"quant_mode: {self.quant_mode}, Act_min: {self.x_min.item():.2f}, "
f"Act_max: {self.x_max.item():.2f})"
)
def forward(
self,
x,
pre_act_scaling_factor=None,
identity=None,
identity_scaling_factor=None,
specified_min=None,
specified_max=None,
):
x_act = x if identity is None else identity + x
# collect running stats if training
if self.training:
assert not self.percentile, "percentile mode is not currently supported for activation."
assert not self.per_channel, "per-channel mode is not currently supported for activation."
x_min = x_act.data.min()
x_max = x_act.data.max()
assert (
x_max.isnan().sum() == 0 and x_min.isnan().sum() == 0
), "NaN detected when computing min/max of the activation"
# Initialization
if self.x_min.min() > -1.1e-5 and self.x_max.max() < 1.1e-5:
self.x_min = self.x_min + x_min
self.x_max = self.x_max + x_max
# exponential moving average (EMA)
# use momentum to prevent the quantized values change greatly every iteration
elif self.act_range_momentum == -1:
self.x_min = torch.min(self.x_min, x_min)
self.x_max = torch.max(self.x_max, x_max)
else:
self.x_min = self.x_min * self.act_range_momentum + x_min * (1 - self.act_range_momentum)
self.x_max = self.x_max * self.act_range_momentum + x_max * (1 - self.act_range_momentum)
if not self.quant_mode:
return x_act, None
x_min = self.x_min if specified_min is None else specified_min
x_max = self.x_max if specified_max is None else specified_max
self.act_scaling_factor = symmetric_linear_quantization_params(
self.activation_bit, x_min, x_max, per_channel=self.per_channel
)
if pre_act_scaling_factor is None:
# this is for the input quantization
quant_act_int = self.act_function(x, self.activation_bit, self.percentile, self.act_scaling_factor)
else:
quant_act_int = FixedPointMul.apply(
x,
pre_act_scaling_factor,
self.activation_bit,
self.act_scaling_factor,
identity,
identity_scaling_factor,
)
correct_output_scale = self.act_scaling_factor.view(-1)
return quant_act_int * correct_output_scale, self.act_scaling_factor
class QuantLinear(nn.Module):
"""
Quantized version of `torch.nn.Linear`. Adds quantization-specific arguments on top of `torch.nn.Linear`.
Args:
weight_bit (`int`, *optional*, defaults to `8`):
Bitwidth for the quantized weight.
bias_bit (`int`, *optional*, defaults to `32`):
Bitwidth for the quantized bias.
per_channel (`bool`, *optional*, defaults to `False`):
Whether or not to use channel-wise quantization.
quant_mode (`bool`, *optional*, defaults to `False`):
Whether or not the layer is quantized.
"""
def __init__(
self, in_features, out_features, bias=True, weight_bit=8, bias_bit=32, per_channel=False, quant_mode=False
):
super().__init__()
self.in_features = in_features
self.out_features = out_features
self.weight = nn.Parameter(torch.zeros([out_features, in_features]))
self.register_buffer("weight_integer", torch.zeros_like(self.weight))
self.register_buffer("fc_scaling_factor", torch.zeros(self.out_features))
if bias:
self.bias = nn.Parameter(torch.zeros(out_features))
self.register_buffer("bias_integer", torch.zeros_like(self.bias))
self.weight_bit = weight_bit
self.quant_mode = quant_mode
self.per_channel = per_channel
self.bias_bit = bias_bit
self.quant_mode = quant_mode
self.percentile_mode = False
self.weight_function = SymmetricQuantFunction.apply
def __repr__(self):
s = super().__repr__()
s = f"({s} weight_bit={self.weight_bit}, quant_mode={self.quant_mode})"
return s
def forward(self, x, prev_act_scaling_factor=None):
if not self.quant_mode:
return nn.functional.linear(x, weight=self.weight, bias=self.bias), None
# assert that prev_act_scaling_factor is a scalar tensor
assert prev_act_scaling_factor is not None and prev_act_scaling_factor.shape == (1,), (
"Input activation to the QuantLinear layer should be globally (non-channel-wise) quantized. "
"Please add a QuantAct layer with `per_channel = True` before this QuantAct layer"
)
w = self.weight
w_transform = w.data.detach()
if self.per_channel:
w_min, _ = torch.min(w_transform, dim=1, out=None)
w_max, _ = torch.max(w_transform, dim=1, out=None)
else:
w_min = w_transform.min().expand(1)
w_max = w_transform.max().expand(1)
self.fc_scaling_factor = symmetric_linear_quantization_params(self.weight_bit, w_min, w_max, self.per_channel)
self.weight_integer = self.weight_function(
self.weight, self.weight_bit, self.percentile_mode, self.fc_scaling_factor
)
bias_scaling_factor = self.fc_scaling_factor * prev_act_scaling_factor
if self.bias is not None:
self.bias_integer = self.weight_function(self.bias, self.bias_bit, False, bias_scaling_factor)
prev_act_scaling_factor = prev_act_scaling_factor.view(1, -1)
x_int = x / prev_act_scaling_factor
return (
nn.functional.linear(x_int, weight=self.weight_integer, bias=self.bias_integer) * bias_scaling_factor,
bias_scaling_factor,
)
class IntGELU(nn.Module):
"""
Quantized version of `torch.nn.GELU`. Adds quantization-specific arguments on top of `torch.nn.GELU`.
Args:
quant_mode (`bool`, *optional*, defaults to `False`):
Whether or not the layer is quantized.
force_dequant (`str`, *optional*, defaults to `"none"`):
Force dequantize the layer if either "gelu" or "nonlinear" is given.
"""
def __init__(self, quant_mode=True, force_dequant="none"):
super().__init__()
self.quant_mode = quant_mode
if force_dequant in ["nonlinear", "gelu"]:
logger.info("Force dequantize gelu")
self.quant_mode = False
if not self.quant_mode:
self.activation_fn = nn.GELU()
self.k = 1.4142
self.const = 14 # dummy integer constant
self.coeff = [-0.2888, -1.769, 1] # a(x+b)**2 + c
self.coeff[2] /= self.coeff[0]
def int_erf(self, x_int, scaling_factor):
b_int = torch.floor(self.coeff[1] / scaling_factor)
c_int = torch.floor(self.coeff[2] / scaling_factor**2)
sign = torch.sign(x_int)
abs_int = torch.min(torch.abs(x_int), -b_int)
y_int = sign * ((abs_int + b_int) ** 2 + c_int)
scaling_factor = scaling_factor**2 * self.coeff[0]
# avoid overflow
y_int = floor_ste.apply(y_int / 2**self.const)
scaling_factor = scaling_factor * 2**self.const
return y_int, scaling_factor
def forward(self, x, scaling_factor=None):
if not self.quant_mode:
return self.activation_fn(x), None
x_int = x / scaling_factor
sigmoid_int, sigmoid_scaling_factor = self.int_erf(x_int, scaling_factor / self.k)
shift_int = 1.0 // sigmoid_scaling_factor
x_int = x_int * (sigmoid_int + shift_int)
scaling_factor = scaling_factor * sigmoid_scaling_factor / 2
return x_int * scaling_factor, scaling_factor
class IntSoftmax(nn.Module):
"""
Quantized version of `torch.nn.Softmax`. Adds quantization-specific arguments on top of `torch.nn.Softmax`.
Args:
output_bit (`int`):
Bitwidth for the layer output activation.
quant_mode (`bool`, *optional*, defaults to `False`):
Whether or not the layer is quantized.
force_dequant (`str`, *optional*, defaults to `"none"`):
Force dequantize the layer if either "softmax" or "nonlinear" is given.
"""
def __init__(self, output_bit, quant_mode=False, force_dequant="none"):
super().__init__()
self.output_bit = output_bit
self.max_bit = 32
self.quant_mode = quant_mode
if force_dequant in ["nonlinear", "softmax"]:
logger.info("Force dequantize softmax")
self.quant_mode = False
self.act = QuantAct(16, quant_mode=self.quant_mode)
self.x0 = -0.6931 # -ln2
self.const = 30 # dummy integer constant
self.coef = [0.35815147, 0.96963238, 1.0] # ax**2 + bx + c
self.coef[1] /= self.coef[0]
self.coef[2] /= self.coef[0]
def int_polynomial(self, x_int, scaling_factor):
with torch.no_grad():
b_int = torch.floor(self.coef[1] / scaling_factor)
c_int = torch.floor(self.coef[2] / scaling_factor**2)
z = (x_int + b_int) * x_int + c_int
scaling_factor = self.coef[0] * scaling_factor**2
return z, scaling_factor
def int_exp(self, x_int, scaling_factor):
with torch.no_grad():
x0_int = torch.floor(self.x0 / scaling_factor)
x_int = torch.max(x_int, self.const * x0_int)
q = floor_ste.apply(x_int / x0_int)
r = x_int - x0_int * q
exp_int, exp_scaling_factor = self.int_polynomial(r, scaling_factor)
exp_int = torch.clamp(floor_ste.apply(exp_int * 2 ** (self.const - q)), min=0)
scaling_factor = exp_scaling_factor / 2**self.const
return exp_int, scaling_factor
def forward(self, x, scaling_factor):
if not self.quant_mode:
return nn.functional.softmax(x, dim=-1), None
x_int = x / scaling_factor
x_int_max, _ = x_int.max(dim=-1, keepdim=True)
x_int = x_int - x_int_max
exp_int, exp_scaling_factor = self.int_exp(x_int, scaling_factor)
# Avoid overflow
exp, exp_scaling_factor = self.act(exp_int, exp_scaling_factor)
exp_int = exp / exp_scaling_factor
exp_int_sum = exp_int.sum(dim=-1, keepdim=True)
factor = floor_ste.apply(2**self.max_bit / exp_int_sum)
exp_int = floor_ste.apply(exp_int * factor / 2 ** (self.max_bit - self.output_bit))
scaling_factor = 1 / 2**self.output_bit
return exp_int * scaling_factor, scaling_factor
class IntLayerNorm(nn.Module):
"""
Quantized version of `torch.nn.LayerNorm`. Adds quantization-specific arguments on top of `torch.nn.LayerNorm`.
Args:
output_bit (`int`, *optional*, defaults to `8`):
Bitwidth for the layer output activation.
quant_mode (`bool`, *optional*, defaults to `False`):
Whether or not the layer is quantized.
force_dequant (`str`, *optional*, defaults to `"none"`):
Force dequantize the layer if either "layernorm" or "nonlinear" is given.
"""
def __init__(self, normalized_shape, eps, output_bit=8, quant_mode=False, force_dequant="none"):
super().__init__()
self.normalized_shape = normalized_shape
self.eps = eps
self.weight = nn.Parameter(torch.zeros(normalized_shape))
self.bias = nn.Parameter(torch.zeros(normalized_shape))
self.quant_mode = quant_mode
if force_dequant in ["nonlinear", "layernorm"]:
logger.info("Force dequantize layernorm")
self.quant_mode = False
self.register_buffer("shift", torch.zeros(1))
self.output_bit = output_bit
self.max_bit = 32
self.dim_sqrt = None
self.activation = QuantAct(self.output_bit, quant_mode=self.quant_mode)
def set_shift(self, y_int):
with torch.no_grad():
y_sq_int = y_int**2
var_int = torch.sum(y_sq_int, axis=2, keepdim=True)
shift = (torch.log2(torch.sqrt(var_int / 2**self.max_bit)).ceil()).max()
shift_old = self.shift
self.shift = torch.max(self.shift, shift)
logger.info(f"Dynamic shift adjustment: {int(shift_old)} -> {int(self.shift)}")
def overflow_fallback(self, y_int):
"""
This fallback function is called when overflow is detected during training time, and adjusts the `self.shift`
to avoid overflow in the subsequent runs.
"""
self.set_shift(y_int) # adjusts `self.shift`
y_int_shifted = floor_ste.apply(y_int / 2**self.shift)
y_sq_int = y_int_shifted**2
var_int = torch.sum(y_sq_int, axis=2, keepdim=True)
return var_int
def forward(self, x, scaling_factor=None):
if not self.quant_mode:
mean = x.mean(axis=2, keepdim=True)
y = x - mean
var = torch.mean(y**2, axis=2, keepdim=True)
x = y / torch.sqrt(self.eps + var)
x = x * self.weight + self.bias
return x, None
# compute sqrt of the feature dimension if it is the first run
if self.dim_sqrt is None:
n = torch.tensor(x.shape[2], dtype=torch.float)
self.dim_sqrt = torch.sqrt(n).to(x.device)
# Normalization: computes mean and variance(std)
x_int = x / scaling_factor
mean_int = round_ste.apply(x_int.mean(axis=2, keepdim=True))
y_int = x_int - mean_int
y_int_shifted = floor_ste.apply(y_int / 2**self.shift)
y_sq_int = y_int_shifted**2
var_int = torch.sum(y_sq_int, axis=2, keepdim=True)
# overflow handling in training time
if self.training:
# if overflow is detected
if var_int.max() >= 2**self.max_bit:
var_int = self.overflow_fallback(y_int)
assert var_int.max() < 2**self.max_bit + 0.1, (
"Error detected in overflow handling: "
"`var_int` exceeds `self.max_bit` (the maximum possible bit width)"
)
# To be replaced with integer-sqrt kernel that produces the same output
std_int = floor_ste.apply(torch.sqrt(var_int)) * 2**self.shift
factor = floor_ste.apply(2**31 / std_int)
y_int = floor_ste.apply(y_int * factor / 2)
scaling_factor = self.dim_sqrt / 2**30
# scaling and shifting
bias = self.bias.data.detach() / (self.weight.data.detach())
bias_int = floor_ste.apply(bias / scaling_factor)
y_int = y_int + bias_int
scaling_factor = scaling_factor * self.weight
x = y_int * scaling_factor
return x, scaling_factor
def get_percentile_min_max(input, lower_percentile, upper_percentile, output_tensor=False):
"""
Calculate the percentile max and min values in a given tensor
Args:
input (`torch.Tensor`):
The target tensor to calculate percentile max and min.
lower_percentile (`float`):
If 0.1, means we return the value of the smallest 0.1% value in the tensor as percentile min.
upper_percentile (`float`):
If 99.9, means we return the value of the largest 0.1% value in the tensor as percentile max.
output_tensor (`bool`, *optional*, defaults to `False`):
If True, this function returns tensors, otherwise it returns values.
Returns:
`Tuple(torch.Tensor, torch.Tensor)`: Percentile min and max value of *input*
"""
input_length = input.shape[0]
lower_index = round(input_length * (1 - lower_percentile * 0.01))
upper_index = round(input_length * upper_percentile * 0.01)
upper_bound = torch.kthvalue(input, k=upper_index).values
if lower_percentile == 0:
lower_bound = upper_bound * 0
# lower_index += 1
else:
lower_bound = -torch.kthvalue(-input, k=lower_index).values
if not output_tensor:
lower_bound = lower_bound.item()
upper_bound = upper_bound.item()
return lower_bound, upper_bound
def linear_quantize(input, scale, zero_point, inplace=False):
"""
Quantize single-precision input tensor to integers with the given scaling factor and zeropoint.
Args:
input (`torch.Tensor`):
Single-precision input tensor to be quantized.
scale (`torch.Tensor`):
Scaling factor for quantization.
zero_pint (`torch.Tensor`):
Shift for quantization.
inplace (`bool`, *optional*, defaults to `False`):
Whether to compute inplace or not.
Returns:
`torch.Tensor`: Linearly quantized value of *input* according to *scale* and *zero_point*.
"""
# reshape scale and zeropoint for convolutional weights and activation
if len(input.shape) == 4:
scale = scale.view(-1, 1, 1, 1)
zero_point = zero_point.view(-1, 1, 1, 1)
# reshape scale and zeropoint for linear weights
elif len(input.shape) == 2:
scale = scale.view(-1, 1)
zero_point = zero_point.view(-1, 1)
else:
scale = scale.view(-1)
zero_point = zero_point.view(-1)
# quantized = float / scale + zero_point
if inplace:
input.mul_(1.0 / scale).add_(zero_point).round_()
return input
return torch.round(1.0 / scale * input + zero_point)
def symmetric_linear_quantization_params(num_bits, saturation_min, saturation_max, per_channel=False):
"""
Compute the scaling factor with the given quantization range for symmetric quantization.
Args:
saturation_min (`torch.Tensor`):
Lower bound for quantization range.
saturation_max (`torch.Tensor`):
Upper bound for quantization range.
per_channel (`bool`, *optional*, defaults to `False`):
Whether to or not use channel-wise quantization.
Returns:
`torch.Tensor`: Scaling factor that linearly quantizes the given range between *saturation_min* and
*saturation_max*.
"""
# in this part, we do not need any gradient computation,
# in order to enforce this, we put torch.no_grad()
with torch.no_grad():
n = 2 ** (num_bits - 1) - 1
if per_channel:
scale, _ = torch.max(torch.stack([saturation_min.abs(), saturation_max.abs()], dim=1), dim=1)
scale = torch.clamp(scale, min=1e-8) / n
else:
scale = max(saturation_min.abs(), saturation_max.abs())
scale = torch.clamp(scale, min=1e-8) / n
return scale
class SymmetricQuantFunction(Function):
"""
Class to quantize the given floating-point values using symmetric quantization with given range and bitwidth.
"""
@staticmethod
def forward(ctx, x, k, percentile_mode, scale):
"""
Args:
x (`torch.Tensor`):
Floating point tensor to be quantized.
k (`int`):
Quantization bitwidth.
percentile_mode (`bool`):
Whether or not to use percentile calibration.
scale (`torch.Tensor`):
Pre-calculated scaling factor for *x*. Note that the current implementation of SymmetricQuantFunction
requires pre-calculated scaling factor.
Returns:
`torch.Tensor`: Symmetric-quantized value of *input*.
"""
zero_point = torch.tensor(0.0).to(scale.device)
n = 2 ** (k - 1) - 1
new_quant_x = linear_quantize(x, scale, zero_point, inplace=False)
new_quant_x = torch.clamp(new_quant_x, -n, n - 1)
ctx.scale = scale
return new_quant_x
@staticmethod
def backward(ctx, grad_output):
scale = ctx.scale
if len(grad_output.shape) == 4:
scale = scale.view(-1, 1, 1, 1)
# reshape scale and zeropoint for linear weights
elif len(grad_output.shape) == 2:
scale = scale.view(-1, 1)
else:
scale = scale.view(-1)
return grad_output.clone() / scale, None, None, None, None
class floor_ste(Function):
"""
Straight-through Estimator(STE) for torch.floor()
"""
@staticmethod
def forward(ctx, x):
return torch.floor(x)
@staticmethod
def backward(ctx, grad_output):
return grad_output.clone()
class round_ste(Function):
"""
Straight-through Estimator(STE) for torch.round()
"""
@staticmethod
def forward(ctx, x):
return torch.round(x)
@staticmethod
def backward(ctx, grad_output):
return grad_output.clone()
def batch_frexp(inputs, max_bit=31):
"""
Decompose the scaling factor into mantissa and twos exponent.
Args:
scaling_factor (`torch.Tensor`):
Target scaling factor to decompose.
Returns:
``Tuple(torch.Tensor, torch.Tensor)`: mantisa and exponent
"""
shape_of_input = inputs.size()
# trans the input to be a 1-d tensor
inputs = inputs.view(-1)
output_m, output_e = np.frexp(inputs.cpu().numpy())
tmp_m = []
for m in output_m:
int_m_shifted = int(
decimal.Decimal(m * (2**max_bit)).quantize(decimal.Decimal("1"), rounding=decimal.ROUND_HALF_UP)
)
tmp_m.append(int_m_shifted)
output_m = np.array(tmp_m)
output_e = float(max_bit) - output_e
return (
torch.from_numpy(output_m).to(inputs.device).view(shape_of_input),
torch.from_numpy(output_e).to(inputs.device).view(shape_of_input),
)
class FixedPointMul(Function):
"""
Function to perform fixed-point arithmetic that can match integer arithmetic on hardware.
Args:
pre_act (`torch.Tensor`):
Input tensor.
pre_act_scaling_factor (`torch.Tensor`):
Scaling factor of the input tensor *pre_act*.
bit_num (`int`):
Quantization bitwidth.
z_scaling_factor (`torch.Tensor`):
Scaling factor of the output tensor.
identity (`torch.Tensor`, *optional*):
Identity tensor, if exists.
identity_scaling_factor (`torch.Tensor`, *optional*):
Scaling factor of the identity tensor *identity*, if exists.
Returns:
`torch.Tensor`: Output tensor(*pre_act* if *identity* is not given, otherwise the addition of *pre_act* and
*identity*), whose scale is rescaled to *z_scaling_factor*.
"""
@staticmethod
def forward(
ctx,
pre_act,
pre_act_scaling_factor,
bit_num,
z_scaling_factor,
identity=None,
identity_scaling_factor=None,
):
if len(pre_act_scaling_factor.shape) == 3:
reshape = lambda x: x # noqa: E731
else:
reshape = lambda x: x.view(1, 1, -1) # noqa: E731
ctx.identity = identity
n = 2 ** (bit_num - 1) - 1
with torch.no_grad():
pre_act_scaling_factor = reshape(pre_act_scaling_factor)
if identity is not None:
identity_scaling_factor = reshape(identity_scaling_factor)
ctx.z_scaling_factor = z_scaling_factor
z_int = torch.round(pre_act / pre_act_scaling_factor)
_A = pre_act_scaling_factor.type(torch.double)
_B = (z_scaling_factor.type(torch.float)).type(torch.double)
new_scale = _A / _B
new_scale = reshape(new_scale)
m, e = batch_frexp(new_scale)
output = z_int.type(torch.double) * m.type(torch.double)
output = torch.round(output / (2.0**e))
if identity is not None:
# needs addition of identity activation
wx_int = torch.round(identity / identity_scaling_factor)
_A = identity_scaling_factor.type(torch.double)
_B = (z_scaling_factor.type(torch.float)).type(torch.double)
new_scale = _A / _B
new_scale = reshape(new_scale)
m1, e1 = batch_frexp(new_scale)
output1 = wx_int.type(torch.double) * m1.type(torch.double)
output1 = torch.round(output1 / (2.0**e1))
output = output1 + output
return torch.clamp(output.type(torch.float), -n - 1, n)
@staticmethod
def backward(ctx, grad_output):
identity_grad = None
if ctx.identity is not None:
identity_grad = grad_output.clone() / ctx.z_scaling_factor
return grad_output.clone() / ctx.z_scaling_factor, None, None, None, None, identity_grad, None
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ibert/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {"configuration_ibert": ["IBertConfig", "IBertOnnxConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_ibert"] = [
"IBertForMaskedLM",
"IBertForMultipleChoice",
"IBertForQuestionAnswering",
"IBertForSequenceClassification",
"IBertForTokenClassification",
"IBertModel",
"IBertPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_ibert import IBertConfig, IBertOnnxConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_ibert import (
IBertForMaskedLM,
IBertForMultipleChoice,
IBertForQuestionAnswering,
IBertForSequenceClassification,
IBertForTokenClassification,
IBertModel,
IBertPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ibert/modeling_ibert.py | # coding=utf-8
# Copyright 2021 The I-BERT Authors (Sehoon Kim, Amir Gholami, Zhewei Yao,
# Michael Mahoney, Kurt Keutzer - UC Berkeley) and The HuggingFace Inc. team.
# Copyright (c) 20121, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch I-BERT model."""
import math
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import gelu
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_ibert import IBertConfig
from .quant_modules import IntGELU, IntLayerNorm, IntSoftmax, QuantAct, QuantEmbedding, QuantLinear
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "kssteven/ibert-roberta-base"
_CONFIG_FOR_DOC = "IBertConfig"
class IBertEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.embedding_bit = 8
self.embedding_act_bit = 16
self.act_bit = 8
self.ln_input_bit = 22
self.ln_output_bit = 32
self.word_embeddings = QuantEmbedding(
config.vocab_size,
config.hidden_size,
padding_idx=config.pad_token_id,
weight_bit=self.embedding_bit,
quant_mode=self.quant_mode,
)
self.token_type_embeddings = QuantEmbedding(
config.type_vocab_size, config.hidden_size, weight_bit=self.embedding_bit, quant_mode=self.quant_mode
)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
# End copy
self.padding_idx = config.pad_token_id
self.position_embeddings = QuantEmbedding(
config.max_position_embeddings,
config.hidden_size,
padding_idx=self.padding_idx,
weight_bit=self.embedding_bit,
quant_mode=self.quant_mode,
)
# Integer-only addition between embeddings
self.embeddings_act1 = QuantAct(self.embedding_act_bit, quant_mode=self.quant_mode)
self.embeddings_act2 = QuantAct(self.embedding_act_bit, quant_mode=self.quant_mode)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(
self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(
input_ids, self.padding_idx, past_key_values_length
).to(input_ids.device)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds, inputs_embeds_scaling_factor = self.word_embeddings(input_ids)
else:
inputs_embeds_scaling_factor = None
token_type_embeddings, token_type_embeddings_scaling_factor = self.token_type_embeddings(token_type_ids)
embeddings, embeddings_scaling_factor = self.embeddings_act1(
inputs_embeds,
inputs_embeds_scaling_factor,
identity=token_type_embeddings,
identity_scaling_factor=token_type_embeddings_scaling_factor,
)
if self.position_embedding_type == "absolute":
position_embeddings, position_embeddings_scaling_factor = self.position_embeddings(position_ids)
embeddings, embeddings_scaling_factor = self.embeddings_act1(
embeddings,
embeddings_scaling_factor,
identity=position_embeddings,
identity_scaling_factor=position_embeddings_scaling_factor,
)
embeddings, embeddings_scaling_factor = self.LayerNorm(embeddings, embeddings_scaling_factor)
embeddings = self.dropout(embeddings)
embeddings, embeddings_scaling_factor = self.output_activation(embeddings, embeddings_scaling_factor)
return embeddings, embeddings_scaling_factor
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class IBertSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.quant_mode = config.quant_mode
self.weight_bit = 8
self.bias_bit = 32
self.act_bit = 8
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
# Q, K, V Linear layers
self.query = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.key = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.value = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
# Requantization (32bit -> 8bit) for Q, K, V activations
self.query_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.key_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.value_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
if self.position_embedding_type != "absolute":
raise ValueError("I-BERT only supports 'absolute' for `config.position_embedding_type`")
self.softmax = IntSoftmax(self.act_bit, quant_mode=self.quant_mode, force_dequant=config.force_dequant)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
# Projection
mixed_query_layer, mixed_query_layer_scaling_factor = self.query(hidden_states, hidden_states_scaling_factor)
mixed_key_layer, mixed_key_layer_scaling_factor = self.key(hidden_states, hidden_states_scaling_factor)
mixed_value_layer, mixed_value_layer_scaling_factor = self.value(hidden_states, hidden_states_scaling_factor)
# Requantization
query_layer, query_layer_scaling_factor = self.query_activation(
mixed_query_layer, mixed_query_layer_scaling_factor
)
key_layer, key_layer_scaling_factor = self.key_activation(mixed_key_layer, mixed_key_layer_scaling_factor)
value_layer, value_layer_scaling_factor = self.value_activation(
mixed_value_layer, mixed_value_layer_scaling_factor
)
# Transpose
query_layer = self.transpose_for_scores(query_layer)
key_layer = self.transpose_for_scores(key_layer)
value_layer = self.transpose_for_scores(value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
scale = math.sqrt(self.attention_head_size)
attention_scores = attention_scores / scale
if self.quant_mode:
attention_scores_scaling_factor = query_layer_scaling_factor * key_layer_scaling_factor / scale
else:
attention_scores_scaling_factor = None
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in IBertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs, attention_probs_scaling_factor = self.softmax(
attention_scores, attention_scores_scaling_factor
)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
if attention_probs_scaling_factor is not None:
context_layer_scaling_factor = attention_probs_scaling_factor * value_layer_scaling_factor
else:
context_layer_scaling_factor = None
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
# requantization: 32-bit -> 8-bit
context_layer, context_layer_scaling_factor = self.output_activation(
context_layer, context_layer_scaling_factor
)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
output_scaling_factor = (
(context_layer_scaling_factor, attention_probs_scaling_factor)
if output_attentions
else (context_layer_scaling_factor,)
)
return outputs, output_scaling_factor
class IBertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.ln_input_bit = 22
self.ln_output_bit = 32
self.dense = QuantLinear(
config.hidden_size,
config.hidden_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.ln_input_act = QuantAct(self.ln_input_bit, quant_mode=self.quant_mode)
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, hidden_states_scaling_factor, input_tensor, input_tensor_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states = self.dropout(hidden_states)
hidden_states, hidden_states_scaling_factor = self.ln_input_act(
hidden_states,
hidden_states_scaling_factor,
identity=input_tensor,
identity_scaling_factor=input_tensor_scaling_factor,
)
hidden_states, hidden_states_scaling_factor = self.LayerNorm(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.self = IBertSelfAttention(config)
self.output = IBertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
self_outputs, self_outputs_scaling_factor = self.self(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
head_mask,
output_attentions,
)
attention_output, attention_output_scaling_factor = self.output(
self_outputs[0], self_outputs_scaling_factor[0], hidden_states, hidden_states_scaling_factor
)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
outputs_scaling_factor = (attention_output_scaling_factor,) + self_outputs_scaling_factor[1:]
return outputs, outputs_scaling_factor
class IBertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.dense = QuantLinear(
config.hidden_size,
config.intermediate_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
if config.hidden_act != "gelu":
raise ValueError("I-BERT only supports 'gelu' for `config.hidden_act`")
self.intermediate_act_fn = IntGELU(quant_mode=self.quant_mode, force_dequant=config.force_dequant)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
def forward(self, hidden_states, hidden_states_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.intermediate_act_fn(
hidden_states, hidden_states_scaling_factor
)
# Requantization: 32bit -> 8-bit
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.ln_input_bit = 22
self.ln_output_bit = 32
self.dense = QuantLinear(
config.intermediate_size,
config.hidden_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.ln_input_act = QuantAct(self.ln_input_bit, quant_mode=self.quant_mode)
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, hidden_states_scaling_factor, input_tensor, input_tensor_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states = self.dropout(hidden_states)
hidden_states, hidden_states_scaling_factor = self.ln_input_act(
hidden_states,
hidden_states_scaling_factor,
identity=input_tensor,
identity_scaling_factor=input_tensor_scaling_factor,
)
hidden_states, hidden_states_scaling_factor = self.LayerNorm(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.seq_len_dim = 1
self.attention = IBertAttention(config)
self.intermediate = IBertIntermediate(config)
self.output = IBertOutput(config)
self.pre_intermediate_act = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.pre_output_act = QuantAct(self.act_bit, quant_mode=self.quant_mode)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
self_attention_outputs, self_attention_outputs_scaling_factor = self.attention(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
attention_output_scaling_factor = self_attention_outputs_scaling_factor[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
layer_output, layer_output_scaling_factor = self.feed_forward_chunk(
attention_output, attention_output_scaling_factor
)
outputs = (layer_output,) + outputs
return outputs
def feed_forward_chunk(self, attention_output, attention_output_scaling_factor):
attention_output, attention_output_scaling_factor = self.pre_intermediate_act(
attention_output, attention_output_scaling_factor
)
intermediate_output, intermediate_output_scaling_factor = self.intermediate(
attention_output, attention_output_scaling_factor
)
intermediate_output, intermediate_output_scaling_factor = self.pre_output_act(
intermediate_output, intermediate_output_scaling_factor
)
layer_output, layer_output_scaling_factor = self.output(
intermediate_output, intermediate_output_scaling_factor, attention_output, attention_output_scaling_factor
)
return layer_output, layer_output_scaling_factor
class IBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.quant_mode = config.quant_mode
self.layer = nn.ModuleList([IBertLayer(config) for _ in range(config.num_hidden_layers)])
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = None # `config.add_cross_attention` is not supported
next_decoder_cache = None # `config.use_cache` is not supported
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
layer_outputs = layer_module(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
layer_head_mask,
output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class IBertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class IBertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = IBertConfig
base_model_prefix = "ibert"
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (QuantLinear, nn.Linear)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, (QuantEmbedding, nn.Embedding)):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, (IntLayerNorm, nn.LayerNorm)):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def resize_token_embeddings(self, new_num_tokens=None):
raise NotImplementedError("`resize_token_embeddings` is not supported for I-BERT.")
IBERT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`IBertConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
IBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare I-BERT Model transformer outputting raw hidden-states without any specific head on top.",
IBERT_START_DOCSTRING,
)
class IBertModel(IBertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.quant_mode = config.quant_mode
self.embeddings = IBertEmbeddings(config)
self.encoder = IBertEncoder(config)
self.pooler = IBertPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[BaseModelOutputWithPoolingAndCrossAttentions, Tuple[torch.FloatTensor]]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length)), device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output, embedding_output_scaling_factor = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
)
encoder_outputs = self.encoder(
embedding_output,
embedding_output_scaling_factor,
attention_mask=extended_attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings("""I-BERT Model with a `language modeling` head on top.""", IBERT_START_DOCSTRING)
class IBertForMaskedLM(IBertPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.bias", "lm_head.decoder.weight"]
def __init__(self, config):
super().__init__(config)
self.ibert = IBertModel(config, add_pooling_layer=False)
self.lm_head = IBertLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
self.lm_head.bias = new_embeddings.bias
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[MaskedLMOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, *optional*, defaults to `{}`):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class IBertLMHead(nn.Module):
"""I-BERT Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
self.decoder.bias = self.bias
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x)
return x
def _tie_weights(self) -> None:
# For accelerate compatibility and to not break backward compatibility
if self.decoder.bias.device.type == "meta":
self.decoder.bias = self.bias
else:
# To tie those two weights if they get disconnected (on TPU or when the bias is resized)
self.bias = self.decoder.bias
@add_start_docstrings(
"""
I-BERT Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForSequenceClassification(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.classifier = IBertClassificationHead(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[SequenceClassifierOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
I-BERT Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForMultipleChoice(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.ibert = IBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[MultipleChoiceModelOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
flat_input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
flat_position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
flat_token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
flat_attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
flat_inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.ibert(
flat_input_ids,
position_ids=flat_position_ids,
token_type_ids=flat_token_type_ids,
attention_mask=flat_attention_mask,
head_mask=head_mask,
inputs_embeds=flat_inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
I-BERT Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForTokenClassification(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[TokenClassifierOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class IBertClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
hidden_states = features[:, 0, :] # take <s> token (equiv. to [CLS])
hidden_states = self.dropout(hidden_states)
hidden_states = self.dense(hidden_states)
hidden_states = torch.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
@add_start_docstrings(
"""
I-BERT Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
IBERT_START_DOCSTRING,
)
class IBertForQuestionAnswering(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[QuestionAnsweringModelOutput, Tuple[torch.FloatTensor]]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's *utils.make_positions*.
Args:
input_ids (`torch.LongTensor`):
Indices of input sequence tokens in the vocabulary.
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/starcoder2/configuration_starcoder2.py | # coding=utf-8
# Copyright 2024 BigCode and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Starcoder2 model configuration"""
from ...configuration_utils import PretrainedConfig
from ...modeling_rope_utils import rope_config_validation
from ...utils import logging
logger = logging.get_logger(__name__)
class Starcoder2Config(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`Starcoder2Model`]. It is used to instantiate a
Starcoder2 model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the [bigcode/starcoder2-7b](https://huggingface.co/bigcode/starcoder2-7b) model.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 49152):
Vocabulary size of the Starcoder2 model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`Starcoder2Model`]
hidden_size (`int`, *optional*, defaults to 3072):
Dimension of the hidden representations.
intermediate_size (`int`, *optional*, defaults to 12288):
Dimension of the MLP representations.
num_hidden_layers (`int`, *optional*, defaults to 30):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 24):
Number of attention heads for each attention layer in the Transformer encoder.
num_key_value_heads (`int`, *optional*, defaults to 2):
This is the number of key_value heads that should be used to implement Grouped Query Attention. If
`num_key_value_heads=num_attention_heads`, the model will use Multi Head Attention (MHA), if
`num_key_value_heads=1` the model will use Multi Query Attention (MQA) otherwise GQA is used. When
converting a multi-head checkpoint to a GQA checkpoint, each group key and value head should be constructed
by meanpooling all the original heads within that group. For more details checkout [this
paper](https://arxiv.org/pdf/2305.13245.pdf). If it is not specified, will default to `8`.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu_pytorch_tanh"`):
The non-linear activation function (function or string) in the decoder.
max_position_embeddings (`int`, *optional*, defaults to 4096):
The maximum sequence length that this model might ever be used with. Starcoder2's sliding window attention
allows sequence of up to 4096*32 tokens.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
norm_epsilon (`float`, *optional*, defaults to 1e-05):
Epsilon value for the layer norm
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
bos_token_id (`int`, *optional*, defaults to 50256):
The id of the "beginning-of-sequence" token.
eos_token_id (`int`, *optional*, defaults to 50256):
The id of the "end-of-sequence" token.
rope_theta (`float`, *optional*, defaults to 10000.0):
The base period of the RoPE embeddings.
rope_scaling (`Dict`, *optional*):
Dictionary containing the scaling configuration for the RoPE embeddings. NOTE: if you apply new rope type
and you expect the model to work on longer `max_position_embeddings`, we recommend you to update this value
accordingly.
Expected contents:
`rope_type` (`str`):
The sub-variant of RoPE to use. Can be one of ['default', 'linear', 'dynamic', 'yarn', 'longrope',
'llama3'], with 'default' being the original RoPE implementation.
`factor` (`float`, *optional*):
Used with all rope types except 'default'. The scaling factor to apply to the RoPE embeddings. In
most scaling types, a `factor` of x will enable the model to handle sequences of length x *
original maximum pre-trained length.
`original_max_position_embeddings` (`int`, *optional*):
Used with 'dynamic', 'longrope' and 'llama3'. The original max position embeddings used during
pretraining.
`attention_factor` (`float`, *optional*):
Used with 'yarn' and 'longrope'. The scaling factor to be applied on the attention
computation. If unspecified, it defaults to value recommended by the implementation, using the
`factor` field to infer the suggested value.
`beta_fast` (`float`, *optional*):
Only used with 'yarn'. Parameter to set the boundary for extrapolation (only) in the linear
ramp function. If unspecified, it defaults to 32.
`beta_slow` (`float`, *optional*):
Only used with 'yarn'. Parameter to set the boundary for interpolation (only) in the linear
ramp function. If unspecified, it defaults to 1.
`short_factor` (`List[float]`, *optional*):
Only used with 'longrope'. The scaling factor to be applied to short contexts (<
`original_max_position_embeddings`). Must be a list of numbers with the same length as the hidden
size divided by the number of attention heads divided by 2
`long_factor` (`List[float]`, *optional*):
Only used with 'longrope'. The scaling factor to be applied to long contexts (<
`original_max_position_embeddings`). Must be a list of numbers with the same length as the hidden
size divided by the number of attention heads divided by 2
`low_freq_factor` (`float`, *optional*):
Only used with 'llama3'. Scaling factor applied to low frequency components of the RoPE
`high_freq_factor` (`float`, *optional*):
Only used with 'llama3'. Scaling factor applied to high frequency components of the RoPE
sliding_window (`int`, *optional*):
Sliding window attention window size. If not specified, will default to `None` (no sliding window).
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
residual_dropout (`float`, *optional*, defaults to 0.0):
Residual connection dropout value.
embedding_dropout (`float`, *optional*, defaults to 0.0):
Embedding dropout.
use_bias (`bool`, *optional*, defaults to `True`):
Whether to use bias term on linear layers of the model.
```python
>>> from transformers import Starcoder2Model, Starcoder2Config
>>> # Initializing a Starcoder2 7B style configuration
>>> configuration = Starcoder2Config()
>>> # Initializing a model from the Starcoder2 7B style configuration
>>> model = Starcoder2Model(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "starcoder2"
keys_to_ignore_at_inference = ["past_key_values"]
# Default tensor parallel plan for base model `Starcoder2`
base_model_tp_plan = {
"layers.*.self_attn.q_proj": "colwise",
"layers.*.self_attn.k_proj": "colwise",
"layers.*.self_attn.v_proj": "colwise",
"layers.*.self_attn.o_proj": "rowwise",
"layers.*.mlp.c_fc": "colwise",
"layers.*.mlp.c_proj": "colwise",
}
def __init__(
self,
vocab_size=49152,
hidden_size=3072,
intermediate_size=12288,
num_hidden_layers=30,
num_attention_heads=24,
num_key_value_heads=2,
hidden_act="gelu_pytorch_tanh",
max_position_embeddings=4096,
initializer_range=0.018042,
norm_epsilon=1e-5,
use_cache=True,
bos_token_id=50256,
eos_token_id=50256,
rope_theta=10000.0,
rope_scaling=None,
sliding_window=None,
attention_dropout=0.0,
residual_dropout=0.0,
embedding_dropout=0.0,
use_bias=True,
**kwargs,
):
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.hidden_size = hidden_size
self.intermediate_size = intermediate_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.sliding_window = sliding_window
self.use_bias = use_bias
self.num_key_value_heads = num_key_value_heads
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.norm_epsilon = norm_epsilon
self.use_cache = use_cache
self.rope_theta = rope_theta
self.rope_scaling = rope_scaling
self.attention_dropout = attention_dropout
self.residual_dropout = residual_dropout
self.embedding_dropout = embedding_dropout
# Validate the correctness of rotary position embeddings parameters
# BC: if there is a 'type' field, move it to 'rope_type'.
if self.rope_scaling is not None and "type" in self.rope_scaling:
self.rope_scaling["rope_type"] = self.rope_scaling["type"]
rope_config_validation(self)
super().__init__(
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
**kwargs,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/starcoder2/modular_starcoder2.py | # coding=utf-8
# Copyright 2024 BigCode and the HuggingFace Inc. team. All rights reserved.
#
# This code is based on EleutherAI's GPT-NeoX library and the GPT-NeoX
# and OPT implementations in this library. It has been modified from its
# original forms to accommodate minor architectural differences compared
# to GPT-NeoX and OPT used by the Meta AI team that trained the model.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch Starcoder2 model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...cache_utils import Cache, DynamicCache
from ...modeling_outputs import (
BaseModelOutputWithPast,
)
from ...utils import (
add_start_docstrings_to_model_forward,
is_flash_attn_2_available,
is_flash_attn_greater_or_equal_2_10,
logging,
)
from ..llama.modeling_llama import (
LlamaForSequenceClassification,
LlamaForTokenClassification,
LlamaRotaryEmbedding,
apply_rotary_pos_emb,
repeat_kv,
)
from ..qwen2.modeling_qwen2 import Qwen2DecoderLayer, Qwen2ForCausalLM, Qwen2Model, Qwen2PreTrainedModel
from .configuration_starcoder2 import Starcoder2Config
if is_flash_attn_2_available():
from ...modeling_flash_attention_utils import _flash_attention_forward
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "Starcoder2Config"
_CHECKPOINT_FOR_DOC = "bigcode/starcoder2-7b"
class Starcoder2RotaryEmbedding(LlamaRotaryEmbedding):
pass
class Starcoder2MLP(nn.Module):
def __init__(self, config: Starcoder2Config):
super().__init__()
embed_dim = config.hidden_size
self.c_fc = nn.Linear(embed_dim, config.intermediate_size, bias=config.use_bias)
self.c_proj = nn.Linear(config.intermediate_size, embed_dim, bias=config.use_bias)
self.act = ACT2FN[config.hidden_act]
self.residual_dropout = config.residual_dropout
def forward(self, hidden_states: Optional[Tuple[torch.FloatTensor]]) -> torch.FloatTensor:
hidden_states = self.c_fc(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.c_proj(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.residual_dropout, training=self.training)
return hidden_states
class Starcoder2Attention(nn.Module):
"""
Multi-headed attention from 'Attention Is All You Need' paper. Modified to use sliding window attention: Longformer
and "Generating Long Sequences with Sparse Transformers".
"""
def __init__(self, config: Starcoder2Config, layer_idx: Optional[int] = None):
super().__init__()
self.config = config
self.layer_idx = layer_idx
if layer_idx is None:
logger.warning_once(
f"Instantiating {self.__class__.__name__} without passing a `layer_idx` is not recommended and will "
"lead to errors during the forward call if caching is used. Please make sure to provide a `layer_idx` "
"when creating this class."
)
self.hidden_size = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.hidden_size // self.num_heads
self.num_key_value_heads = config.num_key_value_heads
self.num_key_value_groups = self.num_heads // self.num_key_value_heads
self.rope_theta = config.rope_theta
self.use_bias = config.use_bias
self.is_causal = True
self.attention_dropout = config.attention_dropout
self.residual_dropout = config.residual_dropout
if (self.head_dim * self.num_heads) != self.hidden_size:
raise ValueError(
f"hidden_size must be divisible by num_heads (got `hidden_size`: {self.hidden_size}"
f" and `num_heads`: {self.num_heads})."
)
self.q_proj = nn.Linear(self.hidden_size, self.num_heads * self.head_dim, bias=self.use_bias)
self.k_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=self.use_bias)
self.v_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=self.use_bias)
self.o_proj = nn.Linear(self.num_heads * self.head_dim, self.hidden_size, bias=self.use_bias)
self.rotary_emb = Starcoder2RotaryEmbedding(config=self.config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
position_embeddings: Optional[Tuple[torch.Tensor, torch.Tensor]] = None, # will become mandatory in v4.46
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.46 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position} # Specific to RoPE models
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
# repeat k/v heads if n_kv_heads < n_heads
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
attn_weights = torch.matmul(query_states, key_states.transpose(2, 3)) / math.sqrt(self.head_dim)
if attention_mask is not None: # no matter the length, we just slice it
causal_mask = attention_mask[:, :, :, : key_states.shape[-2]]
attn_weights += causal_mask
# upcast attention to fp32
attn_weights = nn.functional.softmax(attn_weights, dim=-1, dtype=torch.float32).to(query_states.dtype)
attn_weights = nn.functional.dropout(attn_weights, p=self.attention_dropout, training=self.training)
attn_output = torch.matmul(attn_weights, value_states)
if attn_output.size() != (bsz, self.num_heads, q_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz, self.num_heads, q_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.reshape(bsz, q_len, self.hidden_size)
attn_output = self.o_proj(attn_output)
attn_output = nn.functional.dropout(attn_output, p=self.residual_dropout, training=self.training)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
class Starcoder2FlashAttention2(Starcoder2Attention):
"""
Starcoder2 flash attention module. This module inherits from `Starcoder2Attention` as the weights of the module stays
untouched. The only required change would be on the forward pass where it needs to correctly call the public API of
flash attention and deal with padding tokens in case the input contains any of them.
"""
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
# TODO: Should be removed once Flash Attention for RoCm is bumped to 2.1.
# flash_attn<2.1 generates top-left aligned causal mask, while what is needed here is bottom-right alignement, that was made default for flash_attn>=2.1. This attribute is used to handle this difference. Reference: https://github.com/Dao-AILab/flash-attention/releases/tag/v2.1.0.
# Beware that with flash_attn<2.1, using q_seqlen != k_seqlen (except for the case q_seqlen == 1) produces a wrong mask (top-left).
self._flash_attn_uses_top_left_mask = not is_flash_attn_greater_or_equal_2_10()
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
position_embeddings: Optional[Tuple[torch.Tensor, torch.Tensor]] = None, # will become mandatory in v4.46
):
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.46 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position} # Specific to RoPE models
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
# repeat k/v heads if n_kv_heads < n_heads
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
dropout_rate = 0.0 if not self.training else self.attention_dropout
# In PEFT, usually we cast the layer norms in float32 for training stability reasons
# therefore the input hidden states gets silently casted in float32. Hence, we need
# cast them back in float16 just to be sure everything works as expected.
input_dtype = query_states.dtype
if input_dtype == torch.float32:
if torch.is_autocast_enabled():
target_dtype = torch.get_autocast_gpu_dtype()
# Handle the case where the model is quantized
elif hasattr(self.config, "_pre_quantization_dtype"):
target_dtype = self.config._pre_quantization_dtype
else:
target_dtype = self.q_proj.weight.dtype
logger.warning_once(
f"The input hidden states seems to be silently casted in float32, this might be related to"
f" the fact you have upcasted embedding or layer norm layers in float32. We will cast back the input in"
f" {target_dtype}."
)
query_states = query_states.to(target_dtype)
key_states = key_states.to(target_dtype)
value_states = value_states.to(target_dtype)
# Reshape to the expected shape for Flash Attention
query_states = query_states.transpose(1, 2)
key_states = key_states.transpose(1, 2)
value_states = value_states.transpose(1, 2)
attn_output = _flash_attention_forward(
query_states,
key_states,
value_states,
attention_mask,
q_len,
position_ids=position_ids,
dropout=dropout_rate,
sliding_window=getattr(self.config, "sliding_window", None),
is_causal=self.is_causal,
use_top_left_mask=self._flash_attn_uses_top_left_mask,
)
attn_output = attn_output.reshape(bsz, q_len, self.hidden_size).contiguous()
attn_output = self.o_proj(attn_output)
attn_output = nn.functional.dropout(attn_output, p=self.residual_dropout, training=self.training)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
class Starcoder2SdpaAttention(Starcoder2Attention):
"""
Starcoder2 attention module using torch.nn.functional.scaled_dot_product_attention. This module inherits from
`Starcoder2Attention` as the weights of the module stays untouched. The only changes are on the forward pass to adapt to
SDPA API.
"""
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
position_embeddings: Optional[Tuple[torch.Tensor, torch.Tensor]] = None, # will become mandatory in v4.46
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
if output_attentions:
# TODO: Improve this warning with e.g. `model.config.attn_implementation = "manual"` once this is implemented.
logger.warning_once(
"Starcoder2Model is using Starcoder2SdpaAttention, but `torch.nn.functional.scaled_dot_product_attention` does not support `output_attentions=True`. Falling back to the manual attention implementation, "
'but specifying the manual implementation will be required from Transformers version v5.0.0 onwards. This warning can be removed using the argument `attn_implementation="eager"` when loading the model.'
)
return super().forward(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.46 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position} # Specific to RoPE models
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
causal_mask = attention_mask
if attention_mask is not None: # no matter the length, we just slice it
causal_mask = attention_mask[:, :, :, : key_states.shape[-2]]
# SDPA with memory-efficient backend is currently (torch==2.1.2) bugged with non-contiguous inputs with custom attn_mask,
# Reference: https://github.com/pytorch/pytorch/issues/112577.
if query_states.device.type == "cuda" and attention_mask is not None:
query_states = query_states.contiguous()
key_states = key_states.contiguous()
value_states = value_states.contiguous()
# We dispatch to SDPA's Flash Attention or Efficient kernels via this `is_causal` if statement instead of an inline conditional assignment
# in SDPA to support both torch.compile's dynamic shapes and full graph options. An inline conditional prevents dynamic shapes from compiling.
# # The q_len > 1 is necessary to match with AttentionMaskConverter.to_causal_4d that does not create a causal mask in case q_len == 1.
is_causal = True if causal_mask is None and q_len > 1 else False
attn_output = torch.nn.functional.scaled_dot_product_attention(
query_states,
key_states,
value_states,
attn_mask=causal_mask,
dropout_p=self.attention_dropout if self.training else 0.0,
is_causal=is_causal,
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.reshape(bsz, q_len, self.hidden_size)
attn_output = self.o_proj(attn_output)
# The difference with Mistral is that here it uses dropout
attn_output = nn.functional.dropout(attn_output, p=self.residual_dropout, training=self.training)
return attn_output, None, past_key_value
STARCODER2_ATTENTION_CLASSES = {
"eager": Starcoder2Attention,
"flash_attention_2": Starcoder2FlashAttention2,
"sdpa": Starcoder2SdpaAttention,
}
class Starcoder2DecoderLayer(Qwen2DecoderLayer, nn.Module):
def __init__(self, config: Starcoder2Config, layer_idx: int):
nn.Module.__init__(self)
self.hidden_size = config.hidden_size
self.self_attn = STARCODER2_ATTENTION_CLASSES[config._attn_implementation](config, layer_idx)
self.mlp = Starcoder2MLP(config)
self.input_layernorm = nn.LayerNorm(config.hidden_size, eps=config.norm_epsilon)
self.post_attention_layernorm = nn.LayerNorm(config.hidden_size, eps=config.norm_epsilon)
class Starcoder2PreTrainedModel(Qwen2PreTrainedModel):
pass
STARCODER2_INPUTS_DOCSTRING = None # will be automatically redefined
class Starcoder2Model(Qwen2Model):
"""
Transformer decoder consisting of *config.num_hidden_layers* layers. Each layer is a [`Starcoder2DecoderLayer`]
Args:
config: Starcoder2Config
"""
def __init__(self, config: Starcoder2Config):
super().__init__(config)
self.embedding_dropout = config.embedding_dropout
self.norm = nn.LayerNorm(config.hidden_size, eps=config.norm_epsilon)
@add_start_docstrings_to_model_forward(STARCODER2_INPUTS_DOCSTRING)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
) -> Union[Tuple, BaseModelOutputWithPast]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if (input_ids is None) ^ (inputs_embeds is not None):
raise ValueError("You must specify exactly one of input_ids or inputs_embeds")
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
# kept for BC (non `Cache` `past_key_values` inputs)
return_legacy_cache = False
if use_cache and not isinstance(past_key_values, Cache):
return_legacy_cache = True
if past_key_values is None:
past_key_values = DynamicCache()
else:
past_key_values = DynamicCache.from_legacy_cache(past_key_values)
logger.warning_once(
"We detected that you are passing `past_key_values` as a tuple of tuples. This is deprecated and "
"will be removed in v4.47. Please convert your cache or use an appropriate `Cache` class "
"(https://huggingface.co/docs/transformers/kv_cache#legacy-cache-format)"
)
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids)
if cache_position is None:
past_seen_tokens = past_key_values.get_seq_length() if past_key_values is not None else 0
cache_position = torch.arange(
past_seen_tokens, past_seen_tokens + inputs_embeds.shape[1], device=inputs_embeds.device
)
if position_ids is None:
position_ids = cache_position.unsqueeze(0)
causal_mask = self._update_causal_mask(
attention_mask, inputs_embeds, cache_position, past_key_values, output_attentions
)
hidden_states = inputs_embeds
hidden_states = nn.functional.dropout(hidden_states, p=self.embedding_dropout, training=self.training)
# create position embeddings to be shared across the decoder layers
position_embeddings = self.rotary_emb(hidden_states, position_ids)
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
next_decoder_cache = None
for decoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
causal_mask,
position_ids,
past_key_values,
output_attentions,
use_cache,
cache_position,
position_embeddings,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=causal_mask,
position_ids=position_ids,
past_key_value=past_key_values,
output_attentions=output_attentions,
use_cache=use_cache,
cache_position=cache_position,
position_embeddings=position_embeddings,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache = layer_outputs[2 if output_attentions else 1]
if output_attentions:
all_self_attns += (layer_outputs[1],)
hidden_states = self.norm(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if return_legacy_cache:
next_cache = next_cache.to_legacy_cache()
if not return_dict:
return tuple(v for v in [hidden_states, next_cache, all_hidden_states, all_self_attns] if v is not None)
return BaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
)
class Starcoder2ForCausalLM(Qwen2ForCausalLM):
pass
class Starcoder2ForSequenceClassification(LlamaForSequenceClassification):
pass
class Starcoder2ForTokenClassification(LlamaForTokenClassification):
pass
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/starcoder2/modeling_starcoder2.py | # 🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
# This file was automatically generated from src/transformers/models/starcoder2/modular_starcoder2.py.
# Do NOT edit this file manually as any edits will be overwritten by the generation of
# the file from the modular. If any change should be done, please apply the change to the
# modular_starcoder2.py file directly. One of our CI enforces this.
# 🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
# coding=utf-8
# Copyright 2024 BigCode and the HuggingFace Inc. team. All rights reserved.
#
# This code is based on EleutherAI's GPT-NeoX library and the GPT-NeoX
# and OPT implementations in this library. It has been modified from its
# original forms to accommodate minor architectural differences compared
# to GPT-NeoX and OPT used by the Meta AI team that trained the model.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
from typing import List, Optional, Tuple, Union
import torch
from torch import nn
from ...activations import ACT2FN
from ...cache_utils import Cache, DynamicCache, SlidingWindowCache, StaticCache
from ...generation import GenerationMixin
from ...modeling_attn_mask_utils import AttentionMaskConverter
from ...modeling_outputs import (
BaseModelOutputWithPast,
CausalLMOutputWithPast,
SequenceClassifierOutputWithPast,
TokenClassifierOutput,
)
from ...modeling_rope_utils import ROPE_INIT_FUNCTIONS
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_flash_attn_2_available,
is_flash_attn_greater_or_equal_2_10,
logging,
replace_return_docstrings,
)
from .configuration_starcoder2 import Starcoder2Config
if is_flash_attn_2_available():
from ...modeling_flash_attention_utils import _flash_attention_forward
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "bigcode/starcoder2-7b"
_CONFIG_FOR_DOC = "Starcoder2Config"
class Starcoder2RotaryEmbedding(nn.Module):
def __init__(
self,
dim=None,
max_position_embeddings=2048,
base=10000,
device=None,
scaling_factor=1.0,
rope_type="default",
config: Optional[Starcoder2Config] = None,
):
super().__init__()
# TODO (joao): remove the `if` below, only used for BC
self.rope_kwargs = {}
if config is None:
logger.warning_once(
"`Starcoder2RotaryEmbedding` can now be fully parameterized by passing the model config through the "
"`config` argument. All other arguments will be removed in v4.46"
)
self.rope_kwargs = {
"rope_type": rope_type,
"factor": scaling_factor,
"dim": dim,
"base": base,
"max_position_embeddings": max_position_embeddings,
}
self.rope_type = rope_type
self.max_seq_len_cached = max_position_embeddings
self.original_max_seq_len = max_position_embeddings
else:
# BC: "rope_type" was originally "type"
if config.rope_scaling is not None:
self.rope_type = config.rope_scaling.get("rope_type", config.rope_scaling.get("type"))
else:
self.rope_type = "default"
self.max_seq_len_cached = config.max_position_embeddings
self.original_max_seq_len = config.max_position_embeddings
self.config = config
self.rope_init_fn = ROPE_INIT_FUNCTIONS[self.rope_type]
inv_freq, self.attention_scaling = self.rope_init_fn(self.config, device, **self.rope_kwargs)
self.register_buffer("inv_freq", inv_freq, persistent=False)
self.original_inv_freq = self.inv_freq
def _dynamic_frequency_update(self, position_ids, device):
"""
dynamic RoPE layers should recompute `inv_freq` in the following situations:
1 - growing beyond the cached sequence length (allow scaling)
2 - the current sequence length is in the original scale (avoid losing precision with small sequences)
"""
seq_len = torch.max(position_ids) + 1
if seq_len > self.max_seq_len_cached: # growth
inv_freq, self.attention_scaling = self.rope_init_fn(
self.config, device, seq_len=seq_len, **self.rope_kwargs
)
self.register_buffer("inv_freq", inv_freq, persistent=False) # TODO joao: may break with compilation
self.max_seq_len_cached = seq_len
if seq_len < self.original_max_seq_len and self.max_seq_len_cached > self.original_max_seq_len: # reset
self.register_buffer("inv_freq", self.original_inv_freq, persistent=False)
self.max_seq_len_cached = self.original_max_seq_len
@torch.no_grad()
def forward(self, x, position_ids):
if "dynamic" in self.rope_type:
self._dynamic_frequency_update(position_ids, device=x.device)
# Core RoPE block
inv_freq_expanded = self.inv_freq[None, :, None].float().expand(position_ids.shape[0], -1, 1)
position_ids_expanded = position_ids[:, None, :].float()
# Force float32 (see https://github.com/huggingface/transformers/pull/29285)
device_type = x.device.type
device_type = device_type if isinstance(device_type, str) and device_type != "mps" else "cpu"
with torch.autocast(device_type=device_type, enabled=False):
freqs = (inv_freq_expanded.float() @ position_ids_expanded.float()).transpose(1, 2)
emb = torch.cat((freqs, freqs), dim=-1)
cos = emb.cos()
sin = emb.sin()
# Advanced RoPE types (e.g. yarn) apply a post-processing scaling factor, equivalent to scaling attention
cos = cos * self.attention_scaling
sin = sin * self.attention_scaling
return cos.to(dtype=x.dtype), sin.to(dtype=x.dtype)
class Starcoder2MLP(nn.Module):
def __init__(self, config: Starcoder2Config):
super().__init__()
embed_dim = config.hidden_size
self.c_fc = nn.Linear(embed_dim, config.intermediate_size, bias=config.use_bias)
self.c_proj = nn.Linear(config.intermediate_size, embed_dim, bias=config.use_bias)
self.act = ACT2FN[config.hidden_act]
self.residual_dropout = config.residual_dropout
def forward(self, hidden_states: Optional[Tuple[torch.FloatTensor]]) -> torch.FloatTensor:
hidden_states = self.c_fc(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.c_proj(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.residual_dropout, training=self.training)
return hidden_states
def rotate_half(x):
"""Rotates half the hidden dims of the input."""
x1 = x[..., : x.shape[-1] // 2]
x2 = x[..., x.shape[-1] // 2 :]
return torch.cat((-x2, x1), dim=-1)
def apply_rotary_pos_emb(q, k, cos, sin, position_ids=None, unsqueeze_dim=1):
"""Applies Rotary Position Embedding to the query and key tensors.
Args:
q (`torch.Tensor`): The query tensor.
k (`torch.Tensor`): The key tensor.
cos (`torch.Tensor`): The cosine part of the rotary embedding.
sin (`torch.Tensor`): The sine part of the rotary embedding.
position_ids (`torch.Tensor`, *optional*):
Deprecated and unused.
unsqueeze_dim (`int`, *optional*, defaults to 1):
The 'unsqueeze_dim' argument specifies the dimension along which to unsqueeze cos[position_ids] and
sin[position_ids] so that they can be properly broadcasted to the dimensions of q and k. For example, note
that cos[position_ids] and sin[position_ids] have the shape [batch_size, seq_len, head_dim]. Then, if q and
k have the shape [batch_size, heads, seq_len, head_dim], then setting unsqueeze_dim=1 makes
cos[position_ids] and sin[position_ids] broadcastable to the shapes of q and k. Similarly, if q and k have
the shape [batch_size, seq_len, heads, head_dim], then set unsqueeze_dim=2.
Returns:
`tuple(torch.Tensor)` comprising of the query and key tensors rotated using the Rotary Position Embedding.
"""
cos = cos.unsqueeze(unsqueeze_dim)
sin = sin.unsqueeze(unsqueeze_dim)
q_embed = (q * cos) + (rotate_half(q) * sin)
k_embed = (k * cos) + (rotate_half(k) * sin)
return q_embed, k_embed
def repeat_kv(hidden_states: torch.Tensor, n_rep: int) -> torch.Tensor:
"""
This is the equivalent of torch.repeat_interleave(x, dim=1, repeats=n_rep). The hidden states go from (batch,
num_key_value_heads, seqlen, head_dim) to (batch, num_attention_heads, seqlen, head_dim)
"""
batch, num_key_value_heads, slen, head_dim = hidden_states.shape
if n_rep == 1:
return hidden_states
hidden_states = hidden_states[:, :, None, :, :].expand(batch, num_key_value_heads, n_rep, slen, head_dim)
return hidden_states.reshape(batch, num_key_value_heads * n_rep, slen, head_dim)
class Starcoder2Attention(nn.Module):
"""
Multi-headed attention from 'Attention Is All You Need' paper. Modified to use sliding window attention: Longformer
and "Generating Long Sequences with Sparse Transformers".
"""
def __init__(self, config: Starcoder2Config, layer_idx: Optional[int] = None):
super().__init__()
self.config = config
self.layer_idx = layer_idx
if layer_idx is None:
logger.warning_once(
f"Instantiating {self.__class__.__name__} without passing a `layer_idx` is not recommended and will "
"lead to errors during the forward call if caching is used. Please make sure to provide a `layer_idx` "
"when creating this class."
)
self.hidden_size = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.hidden_size // self.num_heads
self.num_key_value_heads = config.num_key_value_heads
self.num_key_value_groups = self.num_heads // self.num_key_value_heads
self.rope_theta = config.rope_theta
self.use_bias = config.use_bias
self.is_causal = True
self.attention_dropout = config.attention_dropout
self.residual_dropout = config.residual_dropout
if (self.head_dim * self.num_heads) != self.hidden_size:
raise ValueError(
f"hidden_size must be divisible by num_heads (got `hidden_size`: {self.hidden_size}"
f" and `num_heads`: {self.num_heads})."
)
self.q_proj = nn.Linear(self.hidden_size, self.num_heads * self.head_dim, bias=self.use_bias)
self.k_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=self.use_bias)
self.v_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=self.use_bias)
self.o_proj = nn.Linear(self.num_heads * self.head_dim, self.hidden_size, bias=self.use_bias)
self.rotary_emb = Starcoder2RotaryEmbedding(config=self.config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
position_embeddings: Optional[Tuple[torch.Tensor, torch.Tensor]] = None, # will become mandatory in v4.46
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.46 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position} # Specific to RoPE models
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
# repeat k/v heads if n_kv_heads < n_heads
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
attn_weights = torch.matmul(query_states, key_states.transpose(2, 3)) / math.sqrt(self.head_dim)
if attention_mask is not None: # no matter the length, we just slice it
causal_mask = attention_mask[:, :, :, : key_states.shape[-2]]
attn_weights += causal_mask
# upcast attention to fp32
attn_weights = nn.functional.softmax(attn_weights, dim=-1, dtype=torch.float32).to(query_states.dtype)
attn_weights = nn.functional.dropout(attn_weights, p=self.attention_dropout, training=self.training)
attn_output = torch.matmul(attn_weights, value_states)
if attn_output.size() != (bsz, self.num_heads, q_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz, self.num_heads, q_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.reshape(bsz, q_len, self.hidden_size)
attn_output = self.o_proj(attn_output)
attn_output = nn.functional.dropout(attn_output, p=self.residual_dropout, training=self.training)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
class Starcoder2FlashAttention2(Starcoder2Attention):
"""
Starcoder2 flash attention module. This module inherits from `Starcoder2Attention` as the weights of the module stays
untouched. The only required change would be on the forward pass where it needs to correctly call the public API of
flash attention and deal with padding tokens in case the input contains any of them.
"""
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
# TODO: Should be removed once Flash Attention for RoCm is bumped to 2.1.
# flash_attn<2.1 generates top-left aligned causal mask, while what is needed here is bottom-right alignement, that was made default for flash_attn>=2.1. This attribute is used to handle this difference. Reference: https://github.com/Dao-AILab/flash-attention/releases/tag/v2.1.0.
# Beware that with flash_attn<2.1, using q_seqlen != k_seqlen (except for the case q_seqlen == 1) produces a wrong mask (top-left).
self._flash_attn_uses_top_left_mask = not is_flash_attn_greater_or_equal_2_10()
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
position_embeddings: Optional[Tuple[torch.Tensor, torch.Tensor]] = None, # will become mandatory in v4.46
):
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.46 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position} # Specific to RoPE models
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
# repeat k/v heads if n_kv_heads < n_heads
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
dropout_rate = 0.0 if not self.training else self.attention_dropout
# In PEFT, usually we cast the layer norms in float32 for training stability reasons
# therefore the input hidden states gets silently casted in float32. Hence, we need
# cast them back in float16 just to be sure everything works as expected.
input_dtype = query_states.dtype
if input_dtype == torch.float32:
if torch.is_autocast_enabled():
target_dtype = torch.get_autocast_gpu_dtype()
# Handle the case where the model is quantized
elif hasattr(self.config, "_pre_quantization_dtype"):
target_dtype = self.config._pre_quantization_dtype
else:
target_dtype = self.q_proj.weight.dtype
logger.warning_once(
f"The input hidden states seems to be silently casted in float32, this might be related to"
f" the fact you have upcasted embedding or layer norm layers in float32. We will cast back the input in"
f" {target_dtype}."
)
query_states = query_states.to(target_dtype)
key_states = key_states.to(target_dtype)
value_states = value_states.to(target_dtype)
# Reshape to the expected shape for Flash Attention
query_states = query_states.transpose(1, 2)
key_states = key_states.transpose(1, 2)
value_states = value_states.transpose(1, 2)
attn_output = _flash_attention_forward(
query_states,
key_states,
value_states,
attention_mask,
q_len,
position_ids=position_ids,
dropout=dropout_rate,
sliding_window=getattr(self.config, "sliding_window", None),
is_causal=self.is_causal,
use_top_left_mask=self._flash_attn_uses_top_left_mask,
)
attn_output = attn_output.reshape(bsz, q_len, self.hidden_size).contiguous()
attn_output = self.o_proj(attn_output)
attn_output = nn.functional.dropout(attn_output, p=self.residual_dropout, training=self.training)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
class Starcoder2SdpaAttention(Starcoder2Attention):
"""
Starcoder2 attention module using torch.nn.functional.scaled_dot_product_attention. This module inherits from
`Starcoder2Attention` as the weights of the module stays untouched. The only changes are on the forward pass to adapt to
SDPA API.
"""
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
position_embeddings: Optional[Tuple[torch.Tensor, torch.Tensor]] = None, # will become mandatory in v4.46
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
if output_attentions:
# TODO: Improve this warning with e.g. `model.config.attn_implementation = "manual"` once this is implemented.
logger.warning_once(
"Starcoder2Model is using Starcoder2SdpaAttention, but `torch.nn.functional.scaled_dot_product_attention` does not support `output_attentions=True`. Falling back to the manual attention implementation, "
'but specifying the manual implementation will be required from Transformers version v5.0.0 onwards. This warning can be removed using the argument `attn_implementation="eager"` when loading the model.'
)
return super().forward(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
if position_embeddings is None:
logger.warning_once(
"The attention layers in this model are transitioning from computing the RoPE embeddings internally "
"through `position_ids` (2D tensor with the indexes of the tokens), to using externally computed "
"`position_embeddings` (Tuple of tensors, containing cos and sin). In v4.46 `position_ids` will be "
"removed and `position_embeddings` will be mandatory."
)
cos, sin = self.rotary_emb(value_states, position_ids)
else:
cos, sin = position_embeddings
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position} # Specific to RoPE models
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
causal_mask = attention_mask
if attention_mask is not None: # no matter the length, we just slice it
causal_mask = attention_mask[:, :, :, : key_states.shape[-2]]
# SDPA with memory-efficient backend is currently (torch==2.1.2) bugged with non-contiguous inputs with custom attn_mask,
# Reference: https://github.com/pytorch/pytorch/issues/112577.
if query_states.device.type == "cuda" and attention_mask is not None:
query_states = query_states.contiguous()
key_states = key_states.contiguous()
value_states = value_states.contiguous()
# We dispatch to SDPA's Flash Attention or Efficient kernels via this `is_causal` if statement instead of an inline conditional assignment
# in SDPA to support both torch.compile's dynamic shapes and full graph options. An inline conditional prevents dynamic shapes from compiling.
# # The q_len > 1 is necessary to match with AttentionMaskConverter.to_causal_4d that does not create a causal mask in case q_len == 1.
is_causal = True if causal_mask is None and q_len > 1 else False
attn_output = torch.nn.functional.scaled_dot_product_attention(
query_states,
key_states,
value_states,
attn_mask=causal_mask,
dropout_p=self.attention_dropout if self.training else 0.0,
is_causal=is_causal,
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.reshape(bsz, q_len, self.hidden_size)
attn_output = self.o_proj(attn_output)
# The difference with Mistral is that here it uses dropout
attn_output = nn.functional.dropout(attn_output, p=self.residual_dropout, training=self.training)
return attn_output, None, past_key_value
STARCODER2_ATTENTION_CLASSES = {
"eager": Starcoder2Attention,
"flash_attention_2": Starcoder2FlashAttention2,
"sdpa": Starcoder2SdpaAttention,
}
class Starcoder2DecoderLayer(nn.Module):
def __init__(self, config: Starcoder2Config, layer_idx: int):
super().__init__()
self.hidden_size = config.hidden_size
self.self_attn = STARCODER2_ATTENTION_CLASSES[config._attn_implementation](config, layer_idx)
self.mlp = Starcoder2MLP(config)
self.input_layernorm = nn.LayerNorm(config.hidden_size, eps=config.norm_epsilon)
self.post_attention_layernorm = nn.LayerNorm(config.hidden_size, eps=config.norm_epsilon)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = False,
cache_position: Optional[torch.LongTensor] = None,
position_embeddings: Optional[Tuple[torch.Tensor, torch.Tensor]] = None, # will become mandatory in v4.46
**kwargs,
) -> Tuple[torch.FloatTensor, Optional[Tuple[torch.FloatTensor, torch.FloatTensor]]]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`, *optional*): attention mask of size
`(batch, sequence_length)` where padding elements are indicated by 0.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
past_key_value (`Tuple(torch.FloatTensor)`, *optional*): cached past key and value projection states
cache_position (`torch.LongTensor` of shape `(sequence_length)`, *optional*):
Indices depicting the position of the input sequence tokens in the sequence.
position_embeddings (`Tuple[torch.FloatTensor, torch.FloatTensor]`, *optional*):
Tuple containing the cosine and sine positional embeddings of shape `(batch_size, seq_len, head_dim)`,
with `head_dim` being the embedding dimension of each attention head.
kwargs (`dict`, *optional*):
Arbitrary kwargs to be ignored, used for FSDP and other methods that injects code
into the model
"""
residual = hidden_states
hidden_states = self.input_layernorm(hidden_states)
# Self Attention
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
cache_position=cache_position,
position_embeddings=position_embeddings,
)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.post_attention_layernorm(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights,)
if use_cache:
outputs += (present_key_value,)
return outputs
STARCODER2_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`Starcoder2Config`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
@add_start_docstrings(
"The bare Starcoder2 Model outputting raw hidden-states without any specific head on top.",
STARCODER2_START_DOCSTRING,
)
class Starcoder2PreTrainedModel(PreTrainedModel):
config_class = Starcoder2Config
base_model_prefix = "model"
supports_gradient_checkpointing = True
_no_split_modules = ["Starcoder2DecoderLayer"]
_skip_keys_device_placement = "past_key_values"
_supports_flash_attn_2 = True
_supports_sdpa = True
_supports_cache_class = True
_supports_quantized_cache = True
_supports_static_cache = True
def _init_weights(self, module):
std = self.config.initializer_range
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
STARCODER2_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
If `past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`.
[What are position IDs?](../glossary#position-ids)
past_key_values (`Cache` or `tuple(tuple(torch.FloatTensor))`, *optional*):
Pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used to speed up sequential decoding. This typically consists in the `past_key_values`
returned by the model at a previous stage of decoding, when `use_cache=True` or `config.use_cache=True`.
Two formats are allowed:
- a [`~cache_utils.Cache`] instance, see our
[kv cache guide](https://huggingface.co/docs/transformers/en/kv_cache);
- Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`). This is also known as the legacy
cache format.
The model will output the same cache format that is fed as input. If no `past_key_values` are passed, the
legacy cache format will be returned.
If `past_key_values` are used, the user can optionally input only the last `input_ids` (those that don't
have their past key value states given to this model) of shape `(batch_size, 1)` instead of all `input_ids`
of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
cache_position (`torch.LongTensor` of shape `(sequence_length)`, *optional*):
Indices depicting the position of the input sequence tokens in the sequence. Contrarily to `position_ids`,
this tensor is not affected by padding. It is used to update the cache in the correct position and to infer
the complete sequence length.
"""
@add_start_docstrings(
"The bare Starcoder2 Model outputting raw hidden-states without any specific head on top.",
STARCODER2_START_DOCSTRING,
)
class Starcoder2Model(Starcoder2PreTrainedModel):
"""
Transformer decoder consisting of *config.num_hidden_layers* layers. Each layer is a [`Starcoder2DecoderLayer`]
Args:
config: Starcoder2Config
"""
def __init__(self, config: Starcoder2Config):
super().__init__(config)
self.padding_idx = config.pad_token_id
self.vocab_size = config.vocab_size
self.embed_tokens = nn.Embedding(config.vocab_size, config.hidden_size, self.padding_idx)
self.layers = nn.ModuleList(
[Starcoder2DecoderLayer(config, layer_idx) for layer_idx in range(config.num_hidden_layers)]
)
self._attn_implementation = config._attn_implementation
self.norm = nn.LayerNorm(config.hidden_size, eps=config.norm_epsilon)
self.rotary_emb = Starcoder2RotaryEmbedding(config=config)
self.gradient_checkpointing = False
self.embedding_dropout = config.embedding_dropout
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
@add_start_docstrings_to_model_forward(STARCODER2_INPUTS_DOCSTRING)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
) -> Union[Tuple, BaseModelOutputWithPast]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if (input_ids is None) ^ (inputs_embeds is not None):
raise ValueError("You must specify exactly one of input_ids or inputs_embeds")
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
# kept for BC (non `Cache` `past_key_values` inputs)
return_legacy_cache = False
if use_cache and not isinstance(past_key_values, Cache):
return_legacy_cache = True
if past_key_values is None:
past_key_values = DynamicCache()
else:
past_key_values = DynamicCache.from_legacy_cache(past_key_values)
logger.warning_once(
"We detected that you are passing `past_key_values` as a tuple of tuples. This is deprecated and "
"will be removed in v4.47. Please convert your cache or use an appropriate `Cache` class "
"(https://huggingface.co/docs/transformers/kv_cache#legacy-cache-format)"
)
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids)
if cache_position is None:
past_seen_tokens = past_key_values.get_seq_length() if past_key_values is not None else 0
cache_position = torch.arange(
past_seen_tokens, past_seen_tokens + inputs_embeds.shape[1], device=inputs_embeds.device
)
if position_ids is None:
position_ids = cache_position.unsqueeze(0)
causal_mask = self._update_causal_mask(
attention_mask, inputs_embeds, cache_position, past_key_values, output_attentions
)
hidden_states = inputs_embeds
hidden_states = nn.functional.dropout(hidden_states, p=self.embedding_dropout, training=self.training)
# create position embeddings to be shared across the decoder layers
position_embeddings = self.rotary_emb(hidden_states, position_ids)
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
next_decoder_cache = None
for decoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
causal_mask,
position_ids,
past_key_values,
output_attentions,
use_cache,
cache_position,
position_embeddings,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=causal_mask,
position_ids=position_ids,
past_key_value=past_key_values,
output_attentions=output_attentions,
use_cache=use_cache,
cache_position=cache_position,
position_embeddings=position_embeddings,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache = layer_outputs[2 if output_attentions else 1]
if output_attentions:
all_self_attns += (layer_outputs[1],)
hidden_states = self.norm(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if return_legacy_cache:
next_cache = next_cache.to_legacy_cache()
if not return_dict:
return tuple(v for v in [hidden_states, next_cache, all_hidden_states, all_self_attns] if v is not None)
return BaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
)
def _update_causal_mask(
self,
attention_mask: torch.Tensor,
input_tensor: torch.Tensor,
cache_position: torch.Tensor,
past_key_values: Cache,
output_attentions: bool,
):
if self.config._attn_implementation == "flash_attention_2":
if attention_mask is not None and 0.0 in attention_mask:
return attention_mask
return None
# For SDPA, when possible, we will rely on its `is_causal` argument instead of its `attn_mask` argument, in
# order to dispatch on Flash Attention 2. This feature is not compatible with static cache, as SDPA will fail
# to infer the attention mask.
past_seen_tokens = past_key_values.get_seq_length() if past_key_values is not None else 0
using_static_cache = isinstance(past_key_values, StaticCache)
using_sliding_window_cache = isinstance(past_key_values, SlidingWindowCache)
# When output attentions is True, sdpa implementation's forward method calls the eager implementation's forward
if (
self.config._attn_implementation == "sdpa"
and not (using_static_cache or using_sliding_window_cache)
and not output_attentions
):
if AttentionMaskConverter._ignore_causal_mask_sdpa(
attention_mask,
inputs_embeds=input_tensor,
past_key_values_length=past_seen_tokens,
sliding_window=self.config.sliding_window,
is_training=self.training,
):
return None
dtype, device = input_tensor.dtype, input_tensor.device
min_dtype = torch.finfo(dtype).min
sequence_length = input_tensor.shape[1]
# SlidingWindowCache or StaticCache
if using_sliding_window_cache or using_static_cache:
target_length = past_key_values.get_max_cache_shape()
# DynamicCache or no cache
else:
target_length = (
attention_mask.shape[-1]
if isinstance(attention_mask, torch.Tensor)
else past_seen_tokens + sequence_length + 1
)
# In case the provided `attention` mask is 2D, we generate a causal mask here (4D).
causal_mask = self._prepare_4d_causal_attention_mask_with_cache_position(
attention_mask,
sequence_length=sequence_length,
target_length=target_length,
dtype=dtype,
device=device,
cache_position=cache_position,
batch_size=input_tensor.shape[0],
config=self.config,
past_key_values=past_key_values,
)
if (
self.config._attn_implementation == "sdpa"
and attention_mask is not None
and attention_mask.device.type == "cuda"
and not output_attentions
):
# Attend to all tokens in fully masked rows in the causal_mask, for example the relevant first rows when
# using left padding. This is required by F.scaled_dot_product_attention memory-efficient attention path.
# Details: https://github.com/pytorch/pytorch/issues/110213
causal_mask = AttentionMaskConverter._unmask_unattended(causal_mask, min_dtype)
return causal_mask
@staticmethod
def _prepare_4d_causal_attention_mask_with_cache_position(
attention_mask: torch.Tensor,
sequence_length: int,
target_length: int,
dtype: torch.dtype,
device: torch.device,
cache_position: torch.Tensor,
batch_size: int,
config: Starcoder2Config,
past_key_values: Cache,
):
"""
Creates a causal 4D mask of shape `(batch_size, 1, query_length, key_value_length)` from a 2D mask of shape
`(batch_size, key_value_length)`, or if the input `attention_mask` is already 4D, do nothing.
Args:
attention_mask (`torch.Tensor`):
A 2D attention mask of shape `(batch_size, key_value_length)` or a 4D attention mask of shape `(batch_size, 1, query_length, key_value_length)`.
sequence_length (`int`):
The sequence length being processed.
target_length (`int`):
The target length: when generating with static cache, the mask should be as long as the static cache, to account for the 0 padding, the part of the cache that is not filled yet.
dtype (`torch.dtype`):
The dtype to use for the 4D attention mask.
device (`torch.device`):
The device to plcae the 4D attention mask on.
cache_position (`torch.Tensor`):
Indices depicting the position of the input sequence tokens in the sequence.
batch_size (`torch.Tensor`):
Batch size.
config (`Starcoder2Config`):
The model's configuration class
past_key_values (`Cache`):
The cache class that is being used currently to generate
"""
if attention_mask is not None and attention_mask.dim() == 4:
# In this case we assume that the mask comes already in inverted form and requires no inversion or slicing.
causal_mask = attention_mask
else:
min_dtype = torch.finfo(dtype).min
causal_mask = torch.full(
(sequence_length, target_length), fill_value=min_dtype, dtype=dtype, device=device
)
diagonal_attend_mask = torch.arange(target_length, device=device) > cache_position.reshape(-1, 1)
if config.sliding_window is not None:
# if we have sliding window, we should not attend to tokens beyond sliding window length, so we mask them out also
# the check is needed to verify is current checkpoint was trained with sliding window or not
if not isinstance(past_key_values, SlidingWindowCache) or sequence_length > target_length:
sliding_attend_mask = torch.arange(target_length, device=device) <= (
cache_position.reshape(-1, 1) - config.sliding_window
)
diagonal_attend_mask.bitwise_or_(sliding_attend_mask)
causal_mask *= diagonal_attend_mask
causal_mask = causal_mask[None, None, :, :].expand(batch_size, 1, -1, -1)
if attention_mask is not None:
causal_mask = causal_mask.clone() # copy to contiguous memory for in-place edit
if attention_mask.shape[-1] > target_length:
attention_mask = attention_mask[:, :target_length]
mask_length = attention_mask.shape[-1]
padding_mask = causal_mask[:, :, :, :mask_length] + attention_mask[:, None, None, :]
padding_mask = padding_mask == 0
causal_mask[:, :, :, :mask_length] = causal_mask[:, :, :, :mask_length].masked_fill(
padding_mask, min_dtype
)
return causal_mask
class Starcoder2ForCausalLM(Starcoder2PreTrainedModel, GenerationMixin):
_tied_weights_keys = ["lm_head.weight"]
_tp_plan = {"lm_head": "colwise_rep"}
def __init__(self, config):
super().__init__(config)
self.model = Starcoder2Model(config)
self.vocab_size = config.vocab_size
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def set_decoder(self, decoder):
self.model = decoder
def get_decoder(self):
return self.model
@add_start_docstrings_to_model_forward(STARCODER2_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
num_logits_to_keep: int = 0,
**loss_kwargs,
) -> Union[Tuple, CausalLMOutputWithPast]:
r"""
Args:
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
num_logits_to_keep (`int`, *optional*):
Calculate logits for the last `num_logits_to_keep` tokens. If `0`, calculate logits for all
`input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, Starcoder2ForCausalLM
>>> model = Starcoder2ForCausalLM.from_pretrained(PATH_TO_CONVERTED_WEIGHTS)
>>> tokenizer = AutoTokenizer.from_pretrained(PATH_TO_CONVERTED_TOKENIZER)
>>> prompt = "Hey, are you conscious? Can you talk to me?"
>>> inputs = tokenizer(prompt, return_tensors="pt")
>>> # Generate
>>> generate_ids = model.generate(inputs.input_ids, max_length=30)
>>> tokenizer.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
"Hey, are you conscious? Can you talk to me?\nI'm not conscious, but I can talk to you."
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
cache_position=cache_position,
)
hidden_states = outputs[0]
# Only compute necessary logits, and do not upcast them to float if we are not computing the loss
logits = self.lm_head(hidden_states[:, -num_logits_to_keep:, :])
loss = None
if labels is not None:
loss = self.loss_function(logits, labels, self.vocab_size, **loss_kwargs)
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return CausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
The Starcoder2 Model transformer with a sequence classification head on top (linear layer).
[`Starcoder2ForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT-2) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
STARCODER2_START_DOCSTRING,
)
class Starcoder2ForSequenceClassification(Starcoder2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.model = Starcoder2Model(config)
self.score = nn.Linear(config.hidden_size, self.num_labels, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
@add_start_docstrings_to_model_forward(STARCODER2_INPUTS_DOCSTRING)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Union[Cache, List[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutputWithPast]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size = input_ids.shape[0]
else:
batch_size = inputs_embeds.shape[0]
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
pooled_logits = logits[torch.arange(batch_size, device=logits.device), sequence_lengths]
loss = None
if labels is not None:
loss = self.loss_function(logits=logits, labels=labels, pooled_logits=pooled_logits, config=self.config)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
The Starcoder2 Model transformer with a token classification head on top (a linear layer on top of the hidden-states
output) e.g. for Named-Entity-Recognition (NER) tasks.
""",
STARCODER2_START_DOCSTRING,
)
class Starcoder2ForTokenClassification(Starcoder2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.model = Starcoder2Model(config)
if getattr(config, "classifier_dropout", None) is not None:
classifier_dropout = config.classifier_dropout
elif getattr(config, "hidden_dropout", None) is not None:
classifier_dropout = config.hidden_dropout
else:
classifier_dropout = 0.1
self.dropout = nn.Dropout(classifier_dropout)
self.score = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
@add_start_docstrings_to_model_forward(STARCODER2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.score(sequence_output)
loss = None
if labels is not None:
loss = self.loss_function(logits, labels, self.config)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/starcoder2/__init__.py | # Copyright 2024 BigCode and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_torch_available,
)
_import_structure = {
"configuration_starcoder2": ["Starcoder2Config"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_starcoder2"] = [
"Starcoder2ForCausalLM",
"Starcoder2Model",
"Starcoder2PreTrainedModel",
"Starcoder2ForSequenceClassification",
"Starcoder2ForTokenClassification",
]
if TYPE_CHECKING:
from .configuration_starcoder2 import Starcoder2Config
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_starcoder2 import (
Starcoder2ForCausalLM,
Starcoder2ForSequenceClassification,
Starcoder2ForTokenClassification,
Starcoder2Model,
Starcoder2PreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bartpho/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_sentencepiece_available
_import_structure = {}
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_bartpho"] = ["BartphoTokenizer"]
if TYPE_CHECKING:
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_bartpho import BartphoTokenizer
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bartpho/tokenization_bartpho.py | # coding=utf-8
# Copyright 2021 VinAI Research and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License
"""Tokenization classes for BARTpho-syllable model."""
import os
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple
import sentencepiece as spm
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
SPIECE_UNDERLINE = "▁"
VOCAB_FILES_NAMES = {"vocab_file": "sentencepiece.bpe.model", "monolingual_vocab_file": "dict.txt"}
class BartphoTokenizer(PreTrainedTokenizer):
"""
Adapted from [`XLMRobertaTokenizer`]. Based on [SentencePiece](https://github.com/google/sentencepiece).
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file. This vocabulary is the pre-trained SentencePiece model available from the
multilingual XLM-RoBERTa, also used in mBART, consisting of 250K types.
monolingual_vocab_file (`str`):
Path to the monolingual vocabulary file. This monolingual vocabulary consists of Vietnamese-specialized
types extracted from the multilingual vocabulary vocab_file of 250K types.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
sp_model_kwargs (`dict`, *optional*):
Will be passed to the `SentencePieceProcessor.__init__()` method. The [Python wrapper for
SentencePiece](https://github.com/google/sentencepiece/tree/master/python) can be used, among other things,
to set:
- `enable_sampling`: Enable subword regularization.
- `nbest_size`: Sampling parameters for unigram. Invalid for BPE-Dropout.
- `nbest_size = {0,1}`: No sampling is performed.
- `nbest_size > 1`: samples from the nbest_size results.
- `nbest_size < 0`: assuming that nbest_size is infinite and samples from the all hypothesis (lattice)
using forward-filtering-and-backward-sampling algorithm.
- `alpha`: Smoothing parameter for unigram sampling, and dropout probability of merge operations for
BPE-dropout.
Attributes:
sp_model (`SentencePieceProcessor`):
The *SentencePiece* processor that is used for every conversion (string, tokens and IDs).
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
monolingual_vocab_file,
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
sp_model_kwargs: Optional[Dict[str, Any]] = None,
**kwargs,
) -> None:
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
self.vocab_file = vocab_file
self.monolingual_vocab_file = monolingual_vocab_file
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(str(vocab_file))
# Load the reduced vocab
# Keep order of special tokens for backward compatibility
self.fairseq_tokens_to_ids = {}
cnt = 0
for token in [bos_token, pad_token, eos_token, unk_token, sep_token, cls_token]:
if str(token) not in self.fairseq_tokens_to_ids:
self.fairseq_tokens_to_ids[str(token)] = cnt
cnt += 1
with open(monolingual_vocab_file, "r", encoding="utf-8") as f:
for line in f.readlines():
token = line.strip().split()[0]
self.fairseq_tokens_to_ids[token] = len(self.fairseq_tokens_to_ids)
if str(mask_token) not in self.fairseq_tokens_to_ids:
self.fairseq_tokens_to_ids[str(mask_token)] = len(self.fairseq_tokens_to_ids)
self.fairseq_ids_to_tokens = {v: k for k, v in self.fairseq_tokens_to_ids.items()}
super().__init__(
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
sp_model_kwargs=self.sp_model_kwargs,
**kwargs,
)
def __getstate__(self):
state = self.__dict__.copy()
state["sp_model"] = None
state["sp_model_proto"] = self.sp_model.serialized_model_proto()
return state
def __setstate__(self, d):
self.__dict__ = d
# for backward compatibility
if not hasattr(self, "sp_model_kwargs"):
self.sp_model_kwargs = {}
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.LoadFromSerializedProto(self.sp_model_proto)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An BARTPho sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s></s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1, 1] + ([0] * len(token_ids_1)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. BARTPho does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
@property
def vocab_size(self):
return len(self.fairseq_ids_to_tokens)
def get_vocab(self):
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
vocab.update(self.added_tokens_encoder)
return vocab
def _tokenize(self, text: str) -> List[str]:
return self.sp_model.encode(text, out_type=str)
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
if token in self.fairseq_tokens_to_ids:
return self.fairseq_tokens_to_ids[token]
else:
return self.unk_token_id
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.fairseq_ids_to_tokens[index]
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (strings for sub-words) in a single string."""
out_string = "".join(tokens).replace(SPIECE_UNDERLINE, " ").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
out_monolingual_vocab_file = os.path.join(
save_directory,
(filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["monolingual_vocab_file"],
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file) and os.path.isfile(self.vocab_file):
copyfile(self.vocab_file, out_vocab_file)
elif not os.path.isfile(self.vocab_file):
with open(out_vocab_file, "wb") as fi:
content_spiece_model = self.sp_model.serialized_model_proto()
fi.write(content_spiece_model)
if os.path.abspath(self.monolingual_vocab_file) != os.path.abspath(
out_monolingual_vocab_file
) and os.path.isfile(self.monolingual_vocab_file):
copyfile(self.monolingual_vocab_file, out_monolingual_vocab_file)
elif not os.path.isfile(self.monolingual_vocab_file):
with open(out_monolingual_vocab_file, "w", encoding="utf-8") as fp:
for token in self.fairseq_tokens_to_ids:
if token not in self.all_special_tokens:
fp.write(f"{str(token)} \n")
return out_vocab_file, out_monolingual_vocab_file
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/levit/convert_levit_timm_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert LeViT checkpoints from timm."""
import argparse
import json
from collections import OrderedDict
from functools import partial
from pathlib import Path
import timm
import torch
from huggingface_hub import hf_hub_download
from transformers import LevitConfig, LevitForImageClassificationWithTeacher, LevitImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger()
def convert_weight_and_push(
hidden_sizes: int, name: str, config: LevitConfig, save_directory: Path, push_to_hub: bool = True
):
print(f"Converting {name}...")
with torch.no_grad():
if hidden_sizes == 128:
if name[-1] == "S":
from_model = timm.create_model("levit_128s", pretrained=True)
else:
from_model = timm.create_model("levit_128", pretrained=True)
if hidden_sizes == 192:
from_model = timm.create_model("levit_192", pretrained=True)
if hidden_sizes == 256:
from_model = timm.create_model("levit_256", pretrained=True)
if hidden_sizes == 384:
from_model = timm.create_model("levit_384", pretrained=True)
from_model.eval()
our_model = LevitForImageClassificationWithTeacher(config).eval()
huggingface_weights = OrderedDict()
weights = from_model.state_dict()
og_keys = list(from_model.state_dict().keys())
new_keys = list(our_model.state_dict().keys())
print(len(og_keys), len(new_keys))
for i in range(len(og_keys)):
huggingface_weights[new_keys[i]] = weights[og_keys[i]]
our_model.load_state_dict(huggingface_weights)
x = torch.randn((2, 3, 224, 224))
out1 = from_model(x)
out2 = our_model(x).logits
assert torch.allclose(out1, out2), "The model logits don't match the original one."
checkpoint_name = name
print(checkpoint_name)
if push_to_hub:
our_model.save_pretrained(save_directory / checkpoint_name)
image_processor = LevitImageProcessor()
image_processor.save_pretrained(save_directory / checkpoint_name)
print(f"Pushed {checkpoint_name}")
def convert_weights_and_push(save_directory: Path, model_name: str = None, push_to_hub: bool = True):
filename = "imagenet-1k-id2label.json"
num_labels = 1000
expected_shape = (1, num_labels)
repo_id = "huggingface/label-files"
num_labels = num_labels
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
id2label = id2label
label2id = {v: k for k, v in id2label.items()}
ImageNetPreTrainedConfig = partial(LevitConfig, num_labels=num_labels, id2label=id2label, label2id=label2id)
names_to_hidden_sizes = {
"levit-128S": 128,
"levit-128": 128,
"levit-192": 192,
"levit-256": 256,
"levit-384": 384,
}
names_to_config = {
"levit-128S": ImageNetPreTrainedConfig(
hidden_sizes=[128, 256, 384],
num_attention_heads=[4, 6, 8],
depths=[2, 3, 4],
key_dim=[16, 16, 16],
drop_path_rate=0,
),
"levit-128": ImageNetPreTrainedConfig(
hidden_sizes=[128, 256, 384],
num_attention_heads=[4, 8, 12],
depths=[4, 4, 4],
key_dim=[16, 16, 16],
drop_path_rate=0,
),
"levit-192": ImageNetPreTrainedConfig(
hidden_sizes=[192, 288, 384],
num_attention_heads=[3, 5, 6],
depths=[4, 4, 4],
key_dim=[32, 32, 32],
drop_path_rate=0,
),
"levit-256": ImageNetPreTrainedConfig(
hidden_sizes=[256, 384, 512],
num_attention_heads=[4, 6, 8],
depths=[4, 4, 4],
key_dim=[32, 32, 32],
drop_path_rate=0,
),
"levit-384": ImageNetPreTrainedConfig(
hidden_sizes=[384, 512, 768],
num_attention_heads=[6, 9, 12],
depths=[4, 4, 4],
key_dim=[32, 32, 32],
drop_path_rate=0.1,
),
}
if model_name:
convert_weight_and_push(
names_to_hidden_sizes[model_name], model_name, names_to_config[model_name], save_directory, push_to_hub
)
else:
for model_name, config in names_to_config.items():
convert_weight_and_push(names_to_hidden_sizes[model_name], model_name, config, save_directory, push_to_hub)
return config, expected_shape
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_name",
default=None,
type=str,
help="The name of the model you wish to convert, it must be one of the supported Levit* architecture,",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default="levit-dump-folder/",
type=Path,
required=False,
help="Path to the output PyTorch model directory.",
)
parser.add_argument("--push_to_hub", action="store_true", help="Push model and image processor to the hub")
parser.add_argument(
"--no-push_to_hub",
dest="push_to_hub",
action="store_false",
help="Do not push model and image processor to the hub",
)
args = parser.parse_args()
pytorch_dump_folder_path: Path = args.pytorch_dump_folder_path
pytorch_dump_folder_path.mkdir(exist_ok=True, parents=True)
convert_weights_and_push(pytorch_dump_folder_path, args.model_name, args.push_to_hub)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/levit/configuration_levit.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""LeViT model configuration"""
from collections import OrderedDict
from typing import Mapping
from packaging import version
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class LevitConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`LevitModel`]. It is used to instantiate a LeViT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the LeViT
[facebook/levit-128S](https://huggingface.co/facebook/levit-128S) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
image_size (`int`, *optional*, defaults to 224):
The size of the input image.
num_channels (`int`, *optional*, defaults to 3):
Number of channels in the input image.
kernel_size (`int`, *optional*, defaults to 3):
The kernel size for the initial convolution layers of patch embedding.
stride (`int`, *optional*, defaults to 2):
The stride size for the initial convolution layers of patch embedding.
padding (`int`, *optional*, defaults to 1):
The padding size for the initial convolution layers of patch embedding.
patch_size (`int`, *optional*, defaults to 16):
The patch size for embeddings.
hidden_sizes (`List[int]`, *optional*, defaults to `[128, 256, 384]`):
Dimension of each of the encoder blocks.
num_attention_heads (`List[int]`, *optional*, defaults to `[4, 8, 12]`):
Number of attention heads for each attention layer in each block of the Transformer encoder.
depths (`List[int]`, *optional*, defaults to `[4, 4, 4]`):
The number of layers in each encoder block.
key_dim (`List[int]`, *optional*, defaults to `[16, 16, 16]`):
The size of key in each of the encoder blocks.
drop_path_rate (`int`, *optional*, defaults to 0):
The dropout probability for stochastic depths, used in the blocks of the Transformer encoder.
mlp_ratios (`List[int]`, *optional*, defaults to `[2, 2, 2]`):
Ratio of the size of the hidden layer compared to the size of the input layer of the Mix FFNs in the
encoder blocks.
attention_ratios (`List[int]`, *optional*, defaults to `[2, 2, 2]`):
Ratio of the size of the output dimension compared to input dimension of attention layers.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
Example:
```python
>>> from transformers import LevitConfig, LevitModel
>>> # Initializing a LeViT levit-128S style configuration
>>> configuration = LevitConfig()
>>> # Initializing a model (with random weights) from the levit-128S style configuration
>>> model = LevitModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "levit"
def __init__(
self,
image_size=224,
num_channels=3,
kernel_size=3,
stride=2,
padding=1,
patch_size=16,
hidden_sizes=[128, 256, 384],
num_attention_heads=[4, 8, 12],
depths=[4, 4, 4],
key_dim=[16, 16, 16],
drop_path_rate=0,
mlp_ratio=[2, 2, 2],
attention_ratio=[2, 2, 2],
initializer_range=0.02,
**kwargs,
):
super().__init__(**kwargs)
self.image_size = image_size
self.num_channels = num_channels
self.kernel_size = kernel_size
self.stride = stride
self.padding = padding
self.hidden_sizes = hidden_sizes
self.num_attention_heads = num_attention_heads
self.depths = depths
self.key_dim = key_dim
self.drop_path_rate = drop_path_rate
self.patch_size = patch_size
self.attention_ratio = attention_ratio
self.mlp_ratio = mlp_ratio
self.initializer_range = initializer_range
self.down_ops = [
["Subsample", key_dim[0], hidden_sizes[0] // key_dim[0], 4, 2, 2],
["Subsample", key_dim[0], hidden_sizes[1] // key_dim[0], 4, 2, 2],
]
# Copied from transformers.models.vit.configuration_vit.ViTOnnxConfig
class LevitOnnxConfig(OnnxConfig):
torch_onnx_minimum_version = version.parse("1.11")
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
return OrderedDict(
[
("pixel_values", {0: "batch", 1: "num_channels", 2: "height", 3: "width"}),
]
)
@property
def atol_for_validation(self) -> float:
return 1e-4
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/levit/image_processing_levit.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for LeViT."""
from typing import Dict, Iterable, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
get_resize_output_image_size,
resize,
to_channel_dimension_format,
)
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
infer_channel_dimension_format,
is_scaled_image,
make_list_of_images,
to_numpy_array,
valid_images,
validate_preprocess_arguments,
)
from ...utils import TensorType, filter_out_non_signature_kwargs, logging
logger = logging.get_logger(__name__)
class LevitImageProcessor(BaseImageProcessor):
r"""
Constructs a LeViT image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Wwhether to resize the shortest edge of the input to int(256/224 *`size`). Can be overridden by the
`do_resize` parameter in the `preprocess` method.
size (`Dict[str, int]`, *optional*, defaults to `{"shortest_edge": 224}`):
Size of the output image after resizing. If size is a dict with keys "width" and "height", the image will
be resized to `(size["height"], size["width"])`. If size is a dict with key "shortest_edge", the shortest
edge value `c` is rescaled to `int(c * (256/224))`. The smaller edge of the image will be matched to this
value i.e, if height > width, then image will be rescaled to `(size["shortest_egde"] * height / width,
size["shortest_egde"])`. Can be overridden by the `size` parameter in the `preprocess` method.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BICUBIC`):
Resampling filter to use if resizing the image. Can be overridden by the `resample` parameter in the
`preprocess` method.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether or not to center crop the input to `(crop_size["height"], crop_size["width"])`. Can be overridden
by the `do_center_crop` parameter in the `preprocess` method.
crop_size (`Dict`, *optional*, defaults to `{"height": 224, "width": 224}`):
Desired image size after `center_crop`. Can be overridden by the `crop_size` parameter in the `preprocess`
method.
do_rescale (`bool`, *optional*, defaults to `True`):
Controls whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the
`do_rescale` parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter in the
`preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Controls whether to normalize the image. Can be overridden by the `do_normalize` parameter in the
`preprocess` method.
image_mean (`List[int]`, *optional*, defaults to `[0.485, 0.456, 0.406]`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`List[int]`, *optional*, defaults to `[0.229, 0.224, 0.225]`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_center_crop: bool = True,
crop_size: Dict[str, int] = None,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, Iterable[float]]] = IMAGENET_DEFAULT_MEAN,
image_std: Optional[Union[float, Iterable[float]]] = IMAGENET_DEFAULT_STD,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"shortest_edge": 224}
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else {"height": 224, "width": 224}
crop_size = get_size_dict(crop_size, param_name="crop_size")
self.do_resize = do_resize
self.size = size
self.resample = resample
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image.
If size is a dict with keys "width" and "height", the image will be resized to `(size["height"],
size["width"])`.
If size is a dict with key "shortest_edge", the shortest edge value `c` is rescaled to `int(c * (256/224))`.
The smaller edge of the image will be matched to this value i.e, if height > width, then image will be rescaled
to `(size["shortest_egde"] * height / width, size["shortest_egde"])`.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Size of the output image after resizing. If size is a dict with keys "width" and "height", the image
will be resized to (height, width). If size is a dict with key "shortest_edge", the shortest edge value
`c` is rescaled to int(`c` * (256/224)). The smaller edge of the image will be matched to this value
i.e, if height > width, then image will be rescaled to (size * height / width, size).
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resiizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
size_dict = get_size_dict(size, default_to_square=False)
# size_dict is a dict with either keys "height" and "width" or "shortest_edge"
if "shortest_edge" in size:
shortest_edge = int((256 / 224) * size["shortest_edge"])
output_size = get_resize_output_image_size(
image, size=shortest_edge, default_to_square=False, input_data_format=input_data_format
)
size_dict = {"height": output_size[0], "width": output_size[1]}
if "height" not in size_dict or "width" not in size_dict:
raise ValueError(
f"Size dict must have keys 'height' and 'width' or 'shortest_edge'. Got {size_dict.keys()}"
)
return resize(
image,
size=(size_dict["height"], size_dict["width"]),
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
@filter_out_non_signature_kwargs()
def preprocess(
self,
images: ImageInput,
do_resize: Optional[bool] = None,
size: Optional[Dict[str, int]] = None,
resample: PILImageResampling = None,
do_center_crop: Optional[bool] = None,
crop_size: Optional[Dict[str, int]] = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, Iterable[float]]] = None,
image_std: Optional[Union[float, Iterable[float]]] = None,
return_tensors: Optional[TensorType] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> BatchFeature:
"""
Preprocess an image or batch of images to be used as input to a LeViT model.
Args:
images (`ImageInput`):
Image or batch of images to preprocess. Expects a single or batch of images with pixel values ranging
from 0 to 255. If passing in images with pixel values between 0 and 1, set `do_rescale=False`.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the output image after resizing. If size is a dict with keys "width" and "height", the image
will be resized to (height, width). If size is a dict with key "shortest_edge", the shortest edge value
`c` is rescaled to int(`c` * (256/224)). The smaller edge of the image will be matched to this value
i.e, if height > width, then image will be rescaled to (size * height / width, size).
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resiizing the image.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the image.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the output image after center cropping. Crops images to (crop_size["height"],
crop_size["width"]).
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image pixel values by `rescaling_factor` - typical to values between 0 and 1.
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Factor to rescale the image pixel values by.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image pixel values by `image_mean` and `image_std`.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Mean to normalize the image pixel values by.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Standard deviation to normalize the image pixel values by.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`str` or `ChannelDimension`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
resample = resample if resample is not None else self.resample
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
size = size if size is not None else self.size
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size")
images = make_list_of_images(images)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_center_crop=do_center_crop,
crop_size=crop_size,
do_resize=do_resize,
size=size,
resample=resample,
)
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
if do_resize:
images = [self.resize(image, size, resample, input_data_format=input_data_format) for image in images]
if do_center_crop:
images = [self.center_crop(image, crop_size, input_data_format=input_data_format) for image in images]
if do_rescale:
images = [self.rescale(image, rescale_factor, input_data_format=input_data_format) for image in images]
if do_normalize:
images = [
self.normalize(image, image_mean, image_std, input_data_format=input_data_format) for image in images
]
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format) for image in images
]
data = {"pixel_values": images}
return BatchFeature(data=data, tensor_type=return_tensors)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/levit/feature_extraction_levit.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for LeViT."""
import warnings
from ...utils import logging
from .image_processing_levit import LevitImageProcessor
logger = logging.get_logger(__name__)
class LevitFeatureExtractor(LevitImageProcessor):
def __init__(self, *args, **kwargs) -> None:
warnings.warn(
"The class LevitFeatureExtractor is deprecated and will be removed in version 5 of Transformers. Please"
" use LevitImageProcessor instead.",
FutureWarning,
)
super().__init__(*args, **kwargs)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/levit/__init__.py | # Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {"configuration_levit": ["LevitConfig", "LevitOnnxConfig"]}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["feature_extraction_levit"] = ["LevitFeatureExtractor"]
_import_structure["image_processing_levit"] = ["LevitImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_levit"] = [
"LevitForImageClassification",
"LevitForImageClassificationWithTeacher",
"LevitModel",
"LevitPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_levit import LevitConfig, LevitOnnxConfig
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_levit import LevitFeatureExtractor
from .image_processing_levit import LevitImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_levit import (
LevitForImageClassification,
LevitForImageClassificationWithTeacher,
LevitModel,
LevitPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/levit/modeling_levit.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch LeViT model."""
import itertools
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...modeling_outputs import (
BaseModelOutputWithNoAttention,
BaseModelOutputWithPoolingAndNoAttention,
ImageClassifierOutputWithNoAttention,
ModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_levit import LevitConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "LevitConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "facebook/levit-128S"
_EXPECTED_OUTPUT_SHAPE = [1, 16, 384]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "facebook/levit-128S"
_IMAGE_CLASS_EXPECTED_OUTPUT = "tabby, tabby cat"
@dataclass
class LevitForImageClassificationWithTeacherOutput(ModelOutput):
"""
Output type of [`LevitForImageClassificationWithTeacher`].
Args:
logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores as the average of the `cls_logits` and `distillation_logits`.
cls_logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the classification head (i.e. the linear layer on top of the final hidden state of the
class token).
distillation_logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the distillation head (i.e. the linear layer on top of the final hidden state of the
distillation token).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
"""
logits: torch.FloatTensor = None
cls_logits: torch.FloatTensor = None
distillation_logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
class LevitConvEmbeddings(nn.Module):
"""
LeViT Conv Embeddings with Batch Norm, used in the initial patch embedding layer.
"""
def __init__(
self, in_channels, out_channels, kernel_size, stride, padding, dilation=1, groups=1, bn_weight_init=1
):
super().__init__()
self.convolution = nn.Conv2d(
in_channels, out_channels, kernel_size, stride, padding, dilation=dilation, groups=groups, bias=False
)
self.batch_norm = nn.BatchNorm2d(out_channels)
def forward(self, embeddings):
embeddings = self.convolution(embeddings)
embeddings = self.batch_norm(embeddings)
return embeddings
class LevitPatchEmbeddings(nn.Module):
"""
LeViT patch embeddings, for final embeddings to be passed to transformer blocks. It consists of multiple
`LevitConvEmbeddings`.
"""
def __init__(self, config):
super().__init__()
self.embedding_layer_1 = LevitConvEmbeddings(
config.num_channels, config.hidden_sizes[0] // 8, config.kernel_size, config.stride, config.padding
)
self.activation_layer_1 = nn.Hardswish()
self.embedding_layer_2 = LevitConvEmbeddings(
config.hidden_sizes[0] // 8, config.hidden_sizes[0] // 4, config.kernel_size, config.stride, config.padding
)
self.activation_layer_2 = nn.Hardswish()
self.embedding_layer_3 = LevitConvEmbeddings(
config.hidden_sizes[0] // 4, config.hidden_sizes[0] // 2, config.kernel_size, config.stride, config.padding
)
self.activation_layer_3 = nn.Hardswish()
self.embedding_layer_4 = LevitConvEmbeddings(
config.hidden_sizes[0] // 2, config.hidden_sizes[0], config.kernel_size, config.stride, config.padding
)
self.num_channels = config.num_channels
def forward(self, pixel_values):
num_channels = pixel_values.shape[1]
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
embeddings = self.embedding_layer_1(pixel_values)
embeddings = self.activation_layer_1(embeddings)
embeddings = self.embedding_layer_2(embeddings)
embeddings = self.activation_layer_2(embeddings)
embeddings = self.embedding_layer_3(embeddings)
embeddings = self.activation_layer_3(embeddings)
embeddings = self.embedding_layer_4(embeddings)
return embeddings.flatten(2).transpose(1, 2)
class MLPLayerWithBN(nn.Module):
def __init__(self, input_dim, output_dim, bn_weight_init=1):
super().__init__()
self.linear = nn.Linear(in_features=input_dim, out_features=output_dim, bias=False)
self.batch_norm = nn.BatchNorm1d(output_dim)
def forward(self, hidden_state):
hidden_state = self.linear(hidden_state)
hidden_state = self.batch_norm(hidden_state.flatten(0, 1)).reshape_as(hidden_state)
return hidden_state
class LevitSubsample(nn.Module):
def __init__(self, stride, resolution):
super().__init__()
self.stride = stride
self.resolution = resolution
def forward(self, hidden_state):
batch_size, _, channels = hidden_state.shape
hidden_state = hidden_state.view(batch_size, self.resolution, self.resolution, channels)[
:, :: self.stride, :: self.stride
].reshape(batch_size, -1, channels)
return hidden_state
class LevitAttention(nn.Module):
def __init__(self, hidden_sizes, key_dim, num_attention_heads, attention_ratio, resolution):
super().__init__()
self.num_attention_heads = num_attention_heads
self.scale = key_dim**-0.5
self.key_dim = key_dim
self.attention_ratio = attention_ratio
self.out_dim_keys_values = attention_ratio * key_dim * num_attention_heads + key_dim * num_attention_heads * 2
self.out_dim_projection = attention_ratio * key_dim * num_attention_heads
self.queries_keys_values = MLPLayerWithBN(hidden_sizes, self.out_dim_keys_values)
self.activation = nn.Hardswish()
self.projection = MLPLayerWithBN(self.out_dim_projection, hidden_sizes, bn_weight_init=0)
points = list(itertools.product(range(resolution), range(resolution)))
len_points = len(points)
attention_offsets, indices = {}, []
for p1 in points:
for p2 in points:
offset = (abs(p1[0] - p2[0]), abs(p1[1] - p2[1]))
if offset not in attention_offsets:
attention_offsets[offset] = len(attention_offsets)
indices.append(attention_offsets[offset])
self.attention_bias_cache = {}
self.attention_biases = torch.nn.Parameter(torch.zeros(num_attention_heads, len(attention_offsets)))
self.register_buffer(
"attention_bias_idxs", torch.LongTensor(indices).view(len_points, len_points), persistent=False
)
@torch.no_grad()
def train(self, mode=True):
super().train(mode)
if mode and self.attention_bias_cache:
self.attention_bias_cache = {} # clear ab cache
def get_attention_biases(self, device):
if self.training:
return self.attention_biases[:, self.attention_bias_idxs]
else:
device_key = str(device)
if device_key not in self.attention_bias_cache:
self.attention_bias_cache[device_key] = self.attention_biases[:, self.attention_bias_idxs]
return self.attention_bias_cache[device_key]
def forward(self, hidden_state):
batch_size, seq_length, _ = hidden_state.shape
queries_keys_values = self.queries_keys_values(hidden_state)
query, key, value = queries_keys_values.view(batch_size, seq_length, self.num_attention_heads, -1).split(
[self.key_dim, self.key_dim, self.attention_ratio * self.key_dim], dim=3
)
query = query.permute(0, 2, 1, 3)
key = key.permute(0, 2, 1, 3)
value = value.permute(0, 2, 1, 3)
attention = query @ key.transpose(-2, -1) * self.scale + self.get_attention_biases(hidden_state.device)
attention = attention.softmax(dim=-1)
hidden_state = (attention @ value).transpose(1, 2).reshape(batch_size, seq_length, self.out_dim_projection)
hidden_state = self.projection(self.activation(hidden_state))
return hidden_state
class LevitAttentionSubsample(nn.Module):
def __init__(
self,
input_dim,
output_dim,
key_dim,
num_attention_heads,
attention_ratio,
stride,
resolution_in,
resolution_out,
):
super().__init__()
self.num_attention_heads = num_attention_heads
self.scale = key_dim**-0.5
self.key_dim = key_dim
self.attention_ratio = attention_ratio
self.out_dim_keys_values = attention_ratio * key_dim * num_attention_heads + key_dim * num_attention_heads
self.out_dim_projection = attention_ratio * key_dim * num_attention_heads
self.resolution_out = resolution_out
# resolution_in is the intial resolution, resoloution_out is final resolution after downsampling
self.keys_values = MLPLayerWithBN(input_dim, self.out_dim_keys_values)
self.queries_subsample = LevitSubsample(stride, resolution_in)
self.queries = MLPLayerWithBN(input_dim, key_dim * num_attention_heads)
self.activation = nn.Hardswish()
self.projection = MLPLayerWithBN(self.out_dim_projection, output_dim)
self.attention_bias_cache = {}
points = list(itertools.product(range(resolution_in), range(resolution_in)))
points_ = list(itertools.product(range(resolution_out), range(resolution_out)))
len_points, len_points_ = len(points), len(points_)
attention_offsets, indices = {}, []
for p1 in points_:
for p2 in points:
size = 1
offset = (abs(p1[0] * stride - p2[0] + (size - 1) / 2), abs(p1[1] * stride - p2[1] + (size - 1) / 2))
if offset not in attention_offsets:
attention_offsets[offset] = len(attention_offsets)
indices.append(attention_offsets[offset])
self.attention_biases = torch.nn.Parameter(torch.zeros(num_attention_heads, len(attention_offsets)))
self.register_buffer(
"attention_bias_idxs", torch.LongTensor(indices).view(len_points_, len_points), persistent=False
)
@torch.no_grad()
def train(self, mode=True):
super().train(mode)
if mode and self.attention_bias_cache:
self.attention_bias_cache = {} # clear ab cache
def get_attention_biases(self, device):
if self.training:
return self.attention_biases[:, self.attention_bias_idxs]
else:
device_key = str(device)
if device_key not in self.attention_bias_cache:
self.attention_bias_cache[device_key] = self.attention_biases[:, self.attention_bias_idxs]
return self.attention_bias_cache[device_key]
def forward(self, hidden_state):
batch_size, seq_length, _ = hidden_state.shape
key, value = (
self.keys_values(hidden_state)
.view(batch_size, seq_length, self.num_attention_heads, -1)
.split([self.key_dim, self.attention_ratio * self.key_dim], dim=3)
)
key = key.permute(0, 2, 1, 3)
value = value.permute(0, 2, 1, 3)
query = self.queries(self.queries_subsample(hidden_state))
query = query.view(batch_size, self.resolution_out**2, self.num_attention_heads, self.key_dim).permute(
0, 2, 1, 3
)
attention = query @ key.transpose(-2, -1) * self.scale + self.get_attention_biases(hidden_state.device)
attention = attention.softmax(dim=-1)
hidden_state = (attention @ value).transpose(1, 2).reshape(batch_size, -1, self.out_dim_projection)
hidden_state = self.projection(self.activation(hidden_state))
return hidden_state
class LevitMLPLayer(nn.Module):
"""
MLP Layer with `2X` expansion in contrast to ViT with `4X`.
"""
def __init__(self, input_dim, hidden_dim):
super().__init__()
self.linear_up = MLPLayerWithBN(input_dim, hidden_dim)
self.activation = nn.Hardswish()
self.linear_down = MLPLayerWithBN(hidden_dim, input_dim)
def forward(self, hidden_state):
hidden_state = self.linear_up(hidden_state)
hidden_state = self.activation(hidden_state)
hidden_state = self.linear_down(hidden_state)
return hidden_state
class LevitResidualLayer(nn.Module):
"""
Residual Block for LeViT
"""
def __init__(self, module, drop_rate):
super().__init__()
self.module = module
self.drop_rate = drop_rate
def forward(self, hidden_state):
if self.training and self.drop_rate > 0:
rnd = torch.rand(hidden_state.size(0), 1, 1, device=hidden_state.device)
rnd = rnd.ge_(self.drop_rate).div(1 - self.drop_rate).detach()
hidden_state = hidden_state + self.module(hidden_state) * rnd
return hidden_state
else:
hidden_state = hidden_state + self.module(hidden_state)
return hidden_state
class LevitStage(nn.Module):
"""
LeViT Stage consisting of `LevitMLPLayer` and `LevitAttention` layers.
"""
def __init__(
self,
config,
idx,
hidden_sizes,
key_dim,
depths,
num_attention_heads,
attention_ratio,
mlp_ratio,
down_ops,
resolution_in,
):
super().__init__()
self.layers = []
self.config = config
self.resolution_in = resolution_in
# resolution_in is the intial resolution, resolution_out is final resolution after downsampling
for _ in range(depths):
self.layers.append(
LevitResidualLayer(
LevitAttention(hidden_sizes, key_dim, num_attention_heads, attention_ratio, resolution_in),
self.config.drop_path_rate,
)
)
if mlp_ratio > 0:
hidden_dim = hidden_sizes * mlp_ratio
self.layers.append(
LevitResidualLayer(LevitMLPLayer(hidden_sizes, hidden_dim), self.config.drop_path_rate)
)
if down_ops[0] == "Subsample":
self.resolution_out = (self.resolution_in - 1) // down_ops[5] + 1
self.layers.append(
LevitAttentionSubsample(
*self.config.hidden_sizes[idx : idx + 2],
key_dim=down_ops[1],
num_attention_heads=down_ops[2],
attention_ratio=down_ops[3],
stride=down_ops[5],
resolution_in=resolution_in,
resolution_out=self.resolution_out,
)
)
self.resolution_in = self.resolution_out
if down_ops[4] > 0:
hidden_dim = self.config.hidden_sizes[idx + 1] * down_ops[4]
self.layers.append(
LevitResidualLayer(
LevitMLPLayer(self.config.hidden_sizes[idx + 1], hidden_dim), self.config.drop_path_rate
)
)
self.layers = nn.ModuleList(self.layers)
def get_resolution(self):
return self.resolution_in
def forward(self, hidden_state):
for layer in self.layers:
hidden_state = layer(hidden_state)
return hidden_state
class LevitEncoder(nn.Module):
"""
LeViT Encoder consisting of multiple `LevitStage` stages.
"""
def __init__(self, config):
super().__init__()
self.config = config
resolution = self.config.image_size // self.config.patch_size
self.stages = []
self.config.down_ops.append([""])
for stage_idx in range(len(config.depths)):
stage = LevitStage(
config,
stage_idx,
config.hidden_sizes[stage_idx],
config.key_dim[stage_idx],
config.depths[stage_idx],
config.num_attention_heads[stage_idx],
config.attention_ratio[stage_idx],
config.mlp_ratio[stage_idx],
config.down_ops[stage_idx],
resolution,
)
resolution = stage.get_resolution()
self.stages.append(stage)
self.stages = nn.ModuleList(self.stages)
def forward(self, hidden_state, output_hidden_states=False, return_dict=True):
all_hidden_states = () if output_hidden_states else None
for stage in self.stages:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
hidden_state = stage(hidden_state)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
if not return_dict:
return tuple(v for v in [hidden_state, all_hidden_states] if v is not None)
return BaseModelOutputWithNoAttention(last_hidden_state=hidden_state, hidden_states=all_hidden_states)
class LevitClassificationLayer(nn.Module):
"""
LeViT Classification Layer
"""
def __init__(self, input_dim, output_dim):
super().__init__()
self.batch_norm = nn.BatchNorm1d(input_dim)
self.linear = nn.Linear(input_dim, output_dim)
def forward(self, hidden_state):
hidden_state = self.batch_norm(hidden_state)
logits = self.linear(hidden_state)
return logits
class LevitPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = LevitConfig
base_model_prefix = "levit"
main_input_name = "pixel_values"
_no_split_modules = ["LevitResidualLayer"]
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, (nn.BatchNorm1d, nn.BatchNorm2d)):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
LEVIT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`LevitConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
LEVIT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`LevitImageProcessor.__call__`] for details.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Levit model outputting raw features without any specific head on top.",
LEVIT_START_DOCSTRING,
)
class LevitModel(LevitPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.patch_embeddings = LevitPatchEmbeddings(config)
self.encoder = LevitEncoder(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(LEVIT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndNoAttention,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
pixel_values: torch.FloatTensor = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPoolingAndNoAttention]:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
embeddings = self.patch_embeddings(pixel_values)
encoder_outputs = self.encoder(
embeddings,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_state = encoder_outputs[0]
# global average pooling, (batch_size, seq_length, hidden_sizes) -> (batch_size, hidden_sizes)
pooled_output = last_hidden_state.mean(dim=1)
if not return_dict:
return (last_hidden_state, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndNoAttention(
last_hidden_state=last_hidden_state,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
)
@add_start_docstrings(
"""
Levit Model with an image classification head on top (a linear layer on top of the pooled features), e.g. for
ImageNet.
""",
LEVIT_START_DOCSTRING,
)
class LevitForImageClassification(LevitPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.num_labels = config.num_labels
self.levit = LevitModel(config)
# Classifier head
self.classifier = (
LevitClassificationLayer(config.hidden_sizes[-1], config.num_labels)
if config.num_labels > 0
else torch.nn.Identity()
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(LEVIT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=ImageClassifierOutputWithNoAttention,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: torch.FloatTensor = None,
labels: Optional[torch.LongTensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, ImageClassifierOutputWithNoAttention]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.levit(pixel_values, output_hidden_states=output_hidden_states, return_dict=return_dict)
sequence_output = outputs[0]
sequence_output = sequence_output.mean(1)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return ImageClassifierOutputWithNoAttention(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
)
@add_start_docstrings(
"""
LeViT Model transformer with image classification heads on top (a linear layer on top of the final hidden state and
a linear layer on top of the final hidden state of the distillation token) e.g. for ImageNet. .. warning::
This model supports inference-only. Fine-tuning with distillation (i.e. with a teacher) is not yet
supported.
""",
LEVIT_START_DOCSTRING,
)
class LevitForImageClassificationWithTeacher(LevitPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.num_labels = config.num_labels
self.levit = LevitModel(config)
# Classifier head
self.classifier = (
LevitClassificationLayer(config.hidden_sizes[-1], config.num_labels)
if config.num_labels > 0
else torch.nn.Identity()
)
self.classifier_distill = (
LevitClassificationLayer(config.hidden_sizes[-1], config.num_labels)
if config.num_labels > 0
else torch.nn.Identity()
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(LEVIT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=LevitForImageClassificationWithTeacherOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: torch.FloatTensor = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, LevitForImageClassificationWithTeacherOutput]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.levit(pixel_values, output_hidden_states=output_hidden_states, return_dict=return_dict)
sequence_output = outputs[0]
sequence_output = sequence_output.mean(1)
cls_logits, distill_logits = self.classifier(sequence_output), self.classifier_distill(sequence_output)
logits = (cls_logits + distill_logits) / 2
if not return_dict:
output = (logits, cls_logits, distill_logits) + outputs[2:]
return output
return LevitForImageClassificationWithTeacherOutput(
logits=logits,
cls_logits=cls_logits,
distillation_logits=distill_logits,
hidden_states=outputs.hidden_states,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/tvp/processing_tvp.py | # coding=utf-8
# Copyright 2023 The Intel AIA Team Authors, and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License=, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing=, software
# distributed under the License is distributed on an "AS IS" BASIS=,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND=, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for TVP.
"""
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import BatchEncoding
class TvpProcessor(ProcessorMixin):
r"""
Constructs an TVP processor which wraps a TVP image processor and a Bert tokenizer into a single processor.
[`TvpProcessor`] offers all the functionalities of [`TvpImageProcessor`] and [`BertTokenizerFast`]. See the
[`~TvpProcessor.__call__`] and [`~TvpProcessor.decode`] for more information.
Args:
image_processor ([`TvpImageProcessor`], *optional*):
The image processor is a required input.
tokenizer ([`BertTokenizerFast`], *optional*):
The tokenizer is a required input.
"""
attributes = ["image_processor", "tokenizer"]
image_processor_class = "TvpImageProcessor"
tokenizer_class = ("BertTokenizer", "BertTokenizerFast")
def __init__(self, image_processor=None, tokenizer=None, **kwargs):
if image_processor is None:
raise ValueError("You need to specify an `image_processor`.")
if tokenizer is None:
raise ValueError("You need to specify a `tokenizer`.")
super().__init__(image_processor, tokenizer)
def __call__(self, text=None, videos=None, return_tensors=None, **kwargs):
"""
Main method to prepare for the model one or several sequences(s) and image(s). This method forwards the `text`
and `kwargs` arguments to BertTokenizerFast's [`~BertTokenizerFast.__call__`] if `text` is not `None` to encode
the text. To prepare the image(s), this method forwards the `videos` and `kwargs` arguments to
TvpImageProcessor's [`~TvpImageProcessor.__call__`] if `videos` is not `None`. Please refer to the doctsring of
the above two methods for more information.
Args:
text (`str`, `List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence can be a string or a list of strings
(pretokenized string). If the sequences are provided as list of strings (pretokenized), you must set
`is_split_into_words=True` (to lift the ambiguity with a batch of sequences).
videos (`List[PIL.Image.Image]`, `List[np.ndarray]`, `List[torch.Tensor]`, `List[List[PIL.Image.Image]]`, `List[List[np.ndarrray]]`,:
`List[List[torch.Tensor]]`): The video or batch of videos to be prepared. Each video should be a list
of frames, which can be either PIL images or NumPy arrays. In case of NumPy arrays/PyTorch tensors,
each frame should be of shape (H, W, C), where H and W are frame height and width, and C is a number of
channels.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors of a particular framework. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return NumPy `np.ndarray` objects.
- `'jax'`: Return JAX `jnp.ndarray` objects.
Returns:
[`BatchEncoding`]: A [`BatchEncoding`] with the following fields:
- **input_ids** -- List of token ids to be fed to a model. Returned when `text` is not `None`.
- **attention_mask** -- List of indices specifying which tokens should be attended to by the model (when
`return_attention_mask=True` or if *"attention_mask"* is in `self.model_input_names` and if `text` is not
`None`).
- **pixel_values** -- Pixel values to be fed to a model. Returned when `videos` is not `None`.
"""
max_text_length = kwargs.pop("max_text_length", None)
if text is None and videos is None:
raise ValueError("You have to specify either text or videos. Both cannot be none.")
encoding = {}
if text is not None:
textual_input = self.tokenizer.batch_encode_plus(
text,
truncation=True,
padding="max_length",
max_length=max_text_length,
pad_to_max_length=True,
return_tensors=return_tensors,
return_token_type_ids=False,
**kwargs,
)
encoding.update(textual_input)
if videos is not None:
image_features = self.image_processor(videos, return_tensors=return_tensors, **kwargs)
encoding.update(image_features)
return BatchEncoding(data=encoding, tensor_type=return_tensors)
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to BertTokenizerFast's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to BertTokenizerFast's [`~PreTrainedTokenizer.decode`]. Please refer to
the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
def post_process_video_grounding(self, logits, video_durations):
"""
Compute the time of the video.
Args:
logits (`torch.Tensor`):
The logits output of TvpForVideoGrounding.
video_durations (`float`):
The video's duration.
Returns:
start (`float`):
The start time of the video.
end (`float`):
The end time of the video.
"""
start, end = (
round(logits.tolist()[0][0] * video_durations, 1),
round(logits.tolist()[0][1] * video_durations, 1),
)
return start, end
@property
# Copied from transformers.models.blip.processing_blip.BlipProcessor.model_input_names
def model_input_names(self):
tokenizer_input_names = self.tokenizer.model_input_names
image_processor_input_names = self.image_processor.model_input_names
return list(dict.fromkeys(tokenizer_input_names + image_processor_input_names))
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/tvp/modeling_tvp.py | # coding=utf-8
# Copyright 2023 The Intel AIA Team Authors, and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License=, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing=, software
# distributed under the License is distributed on an "AS IS" BASIS=,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND=, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch TVP Model"""
import math
from dataclasses import dataclass
from typing import Optional, Tuple
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...file_utils import add_start_docstrings, add_start_docstrings_to_model_forward, replace_return_docstrings
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling, ModelOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import prune_linear_layer
from ...utils import logging
from ...utils.backbone_utils import load_backbone
from .configuration_tvp import TvpConfig
logger = logging.get_logger(__name__)
@dataclass
class TvpVideoGroundingOutput(ModelOutput):
"""
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `return_loss` is `True`):
Temporal-Distance IoU loss for video grounding.
logits (`torch.FloatTensor` of shape `(batch_size, 2)`):
Contains start_time/duration and end_time/duration. It is the time slot of the videos corresponding to the
input texts.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of
the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
class TvpLoss(nn.Module):
"""
This class computes the losses for `TvpForVideoGrounding`. The process happens in two steps: 1) we compute
hungarian assignment between ground truth boxes and the outputs of the model 2) we supervise each pair of matched
ground-truth / prediction (supervise class and box).
Args:
losses (`List[str]`):
List of all the losses to be applied.
"""
def __init__(self, losses):
super().__init__()
self.loss_map = {
"iou": self.loss_iou,
"distance": self.loss_distance,
"duration": self.loss_duration,
}
for loss in losses:
if loss not in self.loss_map:
raise ValueError(f"Loss {loss} not supported")
self.losses = losses
def loss_iou(self, start_time, end_time, candidates_start_time, candidates_end_time, duration):
"""
Measure the intersection over union.
"""
inter = torch.min(candidates_end_time, end_time) - torch.max(candidates_start_time, start_time)
union = torch.max(candidates_end_time, end_time) - torch.min(candidates_start_time, start_time)
iou = 1 - inter.clamp(min=0) / union
return iou
def loss_distance(self, start_time, end_time, candidates_start_time, candidates_end_time, duration):
"""
Measure the distance of mid points.
"""
mid_candidates = torch.div(torch.add(candidates_start_time, candidates_end_time), 2.0)
mid_groundtruth = torch.div(torch.add(start_time, end_time), 2.0)
distance_diff = torch.div(
torch.max(mid_candidates, mid_groundtruth) - torch.min(mid_candidates, mid_groundtruth), duration
).clamp(min=0.2)
return distance_diff
def loss_duration(self, start_time, end_time, candidates_start_time, candidates_end_time, duration):
"""
Measure the difference of duration.
"""
duration_candidates = torch.sub(candidates_end_time, candidates_start_time)
duration_groundtruth = torch.sub(end_time, start_time)
duration_diff = torch.square(torch.div(torch.sub(duration_candidates, duration_groundtruth), duration))
duration_diff = duration_diff.clamp(min=0.4)
return duration_diff
def forward(self, logits, labels):
"""
This performs the loss computation.
Args:
logits (`torch.FloatTensor`):
The output logits of head module.
labels (`List[torch.FloatTensor]`):
List of tensors ([start, end, duration]), which contains start time, end time of the video corresponding to the text, and also the duration.
"""
duration, start_time, end_time = labels
candidates = torch.mul(logits, duration)
candidates_start_time, candidates_end_time = candidates[:, 0].float(), candidates[:, 1].float()
losses_dict = {}
for loss in self.losses:
losses_dict.update(
{loss: self.loss_map[loss](start_time, end_time, candidates_start_time, candidates_end_time, duration)}
)
return losses_dict
class TvpVisionModel(nn.Module):
def __init__(self, config):
super().__init__()
self.backbone = load_backbone(config)
if config.backbone_config is not None:
in_channels = config.backbone_config.hidden_sizes[-1]
elif hasattr(self.backbone, "config") and hasattr(self.backbone.config, "hidden_sizes"):
in_channels = self.backbone.config.hidden_sizes[-1]
elif hasattr(self.backbone, "config") and hasattr(self.backbone.config, "hidden_size"):
in_channels = self.backbone.config.hidden_size
else:
raise ValueError("Backbone config not found")
self.grid_encoder_conv = nn.Conv2d(
in_channels,
config.hidden_size,
kernel_size=3,
stride=1,
padding=1,
groups=1,
bias=False,
)
def forward(self, pixel_values):
batch_size, num_frames, num_channels, height, width = pixel_values.shape
# (batch_size * num_frames, num_channels, height, width)
pixel_values = pixel_values.view(batch_size * num_frames, num_channels, height, width)
grid_feat_outputs = self.backbone(pixel_values)["feature_maps"][0]
grid = self.grid_encoder_conv(grid_feat_outputs)
grid = nn.functional.max_pool2d(grid, kernel_size=2, stride=2)
grid = nn.functional.relu(grid, inplace=True)
new_channel, new_height, new_width = grid.shape[-3:]
# (batch_size, num_frames, num_channels, height, width)
grid = grid.view(batch_size, num_frames, new_channel, new_height, new_width)
# (batch_size, num_frames, height, width, num_channels)
grid = grid.permute(0, 1, 3, 4, 2)
return grid
class TvpVisualInputEmbedding(nn.Module):
"""
Takes input of both image and video (multi-frame)
"""
def __init__(self, config):
super().__init__()
# sequence embedding
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.row_position_embeddings = nn.Embedding(config.max_grid_row_position_embeddings, config.hidden_size)
self.col_position_embeddings = nn.Embedding(config.max_grid_col_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(1, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.max_grid_row_position_embeddings = config.max_grid_row_position_embeddings
self.max_grid_col_position_embeddings = config.max_grid_col_position_embeddings
def interpolate_pos_encoding(self, embedding: torch.Tensor, height: int, width: int) -> torch.Tensor:
"""
This method allows to interpolate the pre-trained pad weights , to be able to use the model on collection of high
resolution images (high resolution videos).
"""
h0 = w0 = 1
# if height dimension is to be interpolated
if height > self.max_grid_row_position_embeddings:
h0 = height / self.max_grid_row_position_embeddings
# if width dimension is to be interpolated
if width > self.max_grid_col_position_embeddings:
w0 = width / self.max_grid_col_position_embeddings
embedding = embedding.permute(0, 3, 1, 2) # (batch_size, hidden_dim, height, width)
embedding = nn.functional.interpolate(
embedding,
scale_factor=(h0, w0),
mode="bicubic",
align_corners=False,
)
embedding = embedding.permute(0, 2, 3, 1) # (batch_size, height, width, hidden_dim)
return embedding
def add_2d_positional_embeddings(self, grid, interpolate_pos_encoding: bool = False):
"""
Args:
grid: (batch_size, height, width, hidden_dim)
interpolate_pos_encoding: (`bool`, *optional*, defaults to `False`):
Whether to interpolate the pre-trained position encodings.
Returns:
grid + col_position_embeddings.view(*col_shape): (batch_size, *, height, width, hidden_dim)
"""
batch_size, height, width, hidden_dim = grid.shape
# add row-wise position embeddings
# (height, )
row_height = min(self.max_grid_row_position_embeddings, height)
row_position_ids = torch.arange(row_height, dtype=torch.long, device=grid.device)
# (height, hidden_dim)
row_position_embeddings = self.row_position_embeddings(row_position_ids)
row_shape = (1,) * (len(grid.shape) - 3) + (row_height, 1, hidden_dim)
# (batch_size, height, 1, hidden_dim)
row_position_embeddings = row_position_embeddings.view(*row_shape)
# add column-wise position embeddings
row_width = min(self.max_grid_col_position_embeddings, width)
col_position_ids = torch.arange(row_width, dtype=torch.long, device=grid.device)
# (width, hidden_dim)
col_position_embeddings = self.col_position_embeddings(col_position_ids)
col_shape = (batch_size, 1, row_width, hidden_dim)
# (batch_size, 1, width, hidden_dim)
col_position_embeddings = col_position_embeddings.view(*col_shape)
# (batch_size, height, width, hidden_dim)
positional_embeddings = row_position_embeddings + col_position_embeddings
# This interpolation gets triggered ONLY when the input image dim is larger in any dimenstion than the original position embeddings
if interpolate_pos_encoding and (
height > self.max_grid_row_position_embeddings or width > self.max_grid_col_position_embeddings
):
grid = grid + self.interpolate_pos_encoding(positional_embeddings, height, width)
else:
grid = grid + positional_embeddings
return grid
def forward(self, grid, interpolate_pos_encoding: bool = False):
"""
Args:
grid: Array of shape (batch_size, num_frames, height, width, num_channels).
It contains processed frames extracted from videos, and is generated by Tvp image preprocessor. Note,
num_frames can be 1
interpolate_pos_encoding: (bool, *optional*, defaults to `False`):
Whether to interpolate the pre-trained position encodings.
Returns:
embeddings: The embedding of grid with size (batch_size, height*width, num_channels)
"""
batch_size, num_frames, height, width, num_channels = grid.shape
# temporal mean pooling, (batch_size, height, width, hidden_size)
grid = grid.mean(1)
grid = self.add_2d_positional_embeddings(grid, interpolate_pos_encoding=interpolate_pos_encoding)
# image token sequence, (batch_size, height*width, num_channels)
visual_tokens = grid.view(batch_size, -1, num_channels)
visual_tokens_shape = visual_tokens.shape[:-1]
device = visual_tokens.device
# image token type embeddings.
token_type_ids = torch.zeros(visual_tokens_shape, dtype=torch.long, device=device)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = visual_tokens + token_type_embeddings
embeddings = self.layer_norm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class TvpTextInputEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
if position_ids is None:
position_ids = torch.arange(seq_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0).expand(input_shape)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
position_embeddings = self.position_embeddings(position_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + position_embeddings + token_type_embeddings
embeddings = self.layer_norm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class TvpAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size {config.hidden_size} is not a multiple of the number of attention heads {config.num_attention_heads}"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.attn_dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
mask = torch.ones(self.num_attention_heads, self.attention_head_size)
heads = set(heads) - self.pruned_heads # Convert to set and remove already pruned heads
for head in heads:
# Compute how many pruned heads are before the head and move the index accordingly
head = head - sum(1 if h < head else 0 for h in self.pruned_heads)
mask[head] = 0
mask = mask.view(-1).contiguous().eq(1)
index = torch.arange(len(mask))[mask].long()
# Prune linear layers
self.query = prune_linear_layer(self.query, index)
self.key = prune_linear_layer(self.key, index)
self.value = prune_linear_layer(self.value, index)
self.dense = prune_linear_layer(self.dense, index, dim=1)
# Update hyper params and store pruned heads
self.num_attention_heads = self.num_attention_heads - len(heads)
self.all_head_size = self.attention_head_size * self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def _reshape(self, tensor: torch.Tensor, sequence_length: int, batch_size: int):
return (
tensor.view(batch_size, sequence_length, self.num_attention_heads, self.attention_head_size)
.transpose(1, 2)
.contiguous()
)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
output_attentions: Optional[bool] = None,
):
batch_size, sequence_length = hidden_states.shape[:2]
mixed_query_layer = self.query(hidden_states)
mixed_key_layer = self.key(hidden_states)
mixed_value_layer = self.value(hidden_states)
query_layer = self._reshape(mixed_query_layer, sequence_length, batch_size)
key_layer = self._reshape(mixed_key_layer, sequence_length, batch_size)
value_layer = self._reshape(mixed_value_layer, sequence_length, batch_size)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.attn_dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
attn_output = torch.matmul(attention_probs, value_layer)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.reshape(batch_size, sequence_length, self.all_head_size)
attn_output = self.dense(attn_output)
attn_output = self.dropout(attn_output)
attn_output = self.layer_norm(attn_output + hidden_states)
# add attentions if we output them
outputs = (attn_output, attention_probs) if output_attentions else (attn_output,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->Tvp
class TvpIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class TvpOutputLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.layer_norm(hidden_states + input_tensor)
return hidden_states
class TvpEncodeLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = TvpAttention(config)
self.intermediate = TvpIntermediate(config)
self.output = TvpOutputLayer(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
output_attentions: Optional[bool] = None,
):
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
outputs = (layer_output,) + outputs
return outputs
class TvpEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([TvpEncodeLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
return_dict = return_dict if return_dict is not None else self.config.return_dict
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
all_hidden_states = ()
all_attentions = ()
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
(head_mask[i] if head_mask is not None else None),
output_attentions,
)
else:
layer_outputs = layer_module(hidden_states, attention_mask, head_mask[i], output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
outputs = (hidden_states,)
if output_hidden_states:
outputs = outputs + (all_hidden_states,)
if output_attentions:
outputs = outputs + (all_attentions,)
return outputs # last-layer hidden state, (all hidden states), (all attentions)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states if output_hidden_states else None,
attentions=all_attentions if output_attentions else None,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler with Bert->Tvp
class TvpPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class TvpPreTrainedModel(PreTrainedModel):
"""An abstract class to handle weights initialization and
a simple interface for downloading and loading pretrained models.
"""
config_class = TvpConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Embedding)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
if isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
if isinstance(module, nn.Conv2d):
nn.init.kaiming_normal_(module.weight, mode="fan_out", nonlinearity="relu")
if module.bias is not None:
nn.init.constant_(module.bias, 0)
TVP_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`TvpConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
TVP_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Indices can be obtained using [`AutoTokenizer`]. See
[`PreTrainedTokenizer.encode`] and [`PreTrainedTokenizer.__call__`] for details. [What are input
IDs?](../glossary#input-ids)
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_frames, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`TvpImageProcessor`]. See [`TvpImageProcessor.__call__`]
for details.
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
interpolate_pos_encoding (`bool`, *optional*, defaults to `False`):
Whether to interpolate the pre-trained image pad prompter encodings and positional encodings.
"""
class TvpFrameDownPadPrompter(nn.Module):
"""
Pad frames extracted from videos only at the bottom.
"""
def __init__(self, config):
if config.visual_prompter_apply not in ("add", "replace", "remove"):
raise ValueError("`visual_prompter_apply` must be in (add, replace, remove)")
super().__init__()
self.visual_prompt_size = config.visual_prompt_size
self.frame_num = config.frame_num
self.max_img_size = config.max_img_size
self.visual_prompter_apply = config.visual_prompter_apply
self.pad_down = nn.Parameter(
torch.randn([1, config.frame_num, 3, config.visual_prompt_size, config.max_img_size])
)
def forward(self, pixel_values):
if self.visual_prompter_apply != "add":
visual_prompt_mask = torch.ones(
[self.max_img_size, self.max_img_size], dtype=pixel_values.dtype, device=pixel_values.device
)
visual_prompt_mask[self.max_img_size - self.visual_prompt_size : self.max_img_size, :] = 0.0
pixel_values *= visual_prompt_mask
if self.visual_prompter_apply != "remove":
prompt = torch.zeros(
[pixel_values.shape[0], pixel_values.shape[1], 3, self.max_img_size, self.max_img_size],
device=pixel_values.device,
)
start_point = self.max_img_size - self.visual_prompt_size
prompt[:, :, :, start_point : self.max_img_size, :] = self.pad_down
pixel_values += prompt.to(pixel_values.dtype)
return pixel_values
class TvpFramePadPrompter(nn.Module):
"""
Pad frames extracted from videos in the surroundings.
"""
def __init__(self, config):
if config.visual_prompter_apply not in ("add", "replace", "remove"):
raise ValueError("`visual_prompter_apply` must be in (add, replace, remove)")
super().__init__()
self.num_frames = config.num_frames
self.max_img_size = config.max_img_size
self.visual_prompter_apply = config.visual_prompter_apply
self.base_size = config.max_img_size - config.visual_prompt_size * 2
self.pad_up = nn.Parameter(
torch.randn([1, config.num_frames, 3, config.visual_prompt_size, config.max_img_size])
)
self.pad_down = nn.Parameter(
torch.randn([1, config.num_frames, 3, config.visual_prompt_size, config.max_img_size])
)
self.pad_left = nn.Parameter(
torch.randn(
[
1,
config.num_frames,
3,
config.max_img_size - config.visual_prompt_size * 2,
config.visual_prompt_size,
]
)
)
self.pad_right = nn.Parameter(
torch.randn(
[
1,
config.num_frames,
3,
config.max_img_size - config.visual_prompt_size * 2,
config.visual_prompt_size,
]
)
)
def interpolate_pad_encoding(self, prompt: torch.Tensor, height: int, width: int) -> torch.Tensor:
"""
This method allows to interpolate the pre-trained pad weights, to be able to use the model on collection of high
resolution images (high resolution videos).
"""
# creates scale factor from height and width of original image wrt to the config.max_img_size
h0, w0 = height / self.max_img_size, width / self.max_img_size
batch, num_frames, channels, prompt_height, prompt_width = prompt.shape
# reshaping the batch and num_frames dimension into a single one (i.e (b,frames,c,h,w)-->(b*frames,c,h,w)), to apply bicubic interpolation
prompt = prompt.reshape(batch * num_frames, channels, prompt_height, prompt_width)
prompt = nn.functional.interpolate(
prompt,
scale_factor=(h0, w0),
mode="bicubic",
align_corners=False,
)
# reversing back to (batch,frames,channels,height,width), where height and width is the new interpolated height and width
prompt = prompt.reshape(batch, num_frames, channels, height, width)
return prompt
def forward(self, pixel_values, interpolate_pad_encoding: bool = False):
height, width = (
(pixel_values.shape[-2], pixel_values.shape[-1])
if interpolate_pad_encoding
else (self.max_img_size, self.max_img_size)
)
if self.visual_prompter_apply not in ("add", "remove", "replace"):
raise ValueError(f"Invalid visual_prompter_apply value {self.visual_prompter_apply}")
if self.visual_prompter_apply in ("replace", "remove"):
visual_prompt_mask = torch.ones([height, width], dtype=pixel_values.dtype, device=pixel_values.device)
pixel_values *= visual_prompt_mask
if self.visual_prompter_apply in ("replace", "add"):
base = torch.zeros(1, self.num_frames, 3, self.base_size, self.base_size, device=pixel_values.device)
prompt = torch.cat([self.pad_left, base, self.pad_right], dim=4)
prompt = torch.cat([self.pad_up, prompt, self.pad_down], dim=3)
prompt = torch.cat(pixel_values.size(0) * [prompt])
if interpolate_pad_encoding:
prompt = self.interpolate_pad_encoding(prompt, height, width)
pixel_values = pixel_values + prompt.to(pixel_values.dtype)
return pixel_values
TVP_PROMPTER_CLASSES_MAPPING = {
"framedownpad": TvpFrameDownPadPrompter,
"framepad": TvpFramePadPrompter,
}
@add_start_docstrings(
"The bare Tvp Model transformer outputting BaseModelOutputWithPooling object without any specific head on" " top.",
TVP_START_DOCSTRING,
)
class TvpModel(TvpPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.vision_model = TvpVisionModel(config)
self.embeddings = TvpTextInputEmbeddings(config)
self.visual_embeddings = TvpVisualInputEmbedding(config)
self.encoder = TvpEncoder(config)
self.pooler = TvpPooler(config)
self.text_prompt = nn.Parameter(torch.randn([1, 10, config.hidden_size]))
self.dropout = nn.Dropout(config.hidden_dropout_prob)
if config.visual_prompter_type not in TVP_PROMPTER_CLASSES_MAPPING:
raise ValueError("`visual_prompter_type` must be in (framedownpad, framepad)")
self.visual_prompter = TVP_PROMPTER_CLASSES_MAPPING[config.visual_prompter_type](config)
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""Prunes heads of the model.
heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(TVP_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutputWithPooling, config_class=TvpConfig)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
interpolate_pos_encoding: bool = False,
):
r"""
Returns:
Examples:
```python
>>> import torch
>>> from transformers import AutoConfig, AutoTokenizer, TvpModel
>>> model = TvpModel.from_pretrained("Jiqing/tiny-random-tvp")
>>> tokenizer = AutoTokenizer.from_pretrained("Jiqing/tiny-random-tvp")
>>> pixel_values = torch.rand(1, 1, 3, 448, 448)
>>> text_inputs = tokenizer("This is an example input", return_tensors="pt")
>>> output = model(text_inputs.input_ids, pixel_values, text_inputs.attention_mask)
```"""
return_dict = return_dict if return_dict is not None else self.config.return_dict
# Add visual prompt, it compensates for the spatiotemporal information loss in 2D visual features.
pixel_values = self.vision_model(
self.visual_prompter(pixel_values, interpolate_pad_encoding=interpolate_pos_encoding)
)
# (batch_size, sequence_length, hidden_size)
text_embedding_output = self.embeddings(input_ids=input_ids)
# (batch_size, visual_sequence_length, hidden_size)
visual_embedding_output = self.visual_embeddings(
pixel_values, interpolate_pos_encoding=interpolate_pos_encoding
)
if attention_mask is not None:
# (batch_size, visual_sequence_length)
visual_attention_mask = attention_mask.new_ones(visual_embedding_output.shape[:2])
pt_mask = torch.ones(attention_mask.shape[0], 10).to(
device=attention_mask.device, dtype=attention_mask.dtype
)
attention_mask = torch.cat([pt_mask, attention_mask, visual_attention_mask], dim=-1)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
attention_mask = self.get_extended_attention_mask(attention_mask, input_ids.size()).to(input_ids.device)
text_prompt = self.text_prompt.expand(text_embedding_output.shape[0], -1, -1)
# (batch_size, sequence_length + visual_sequence_length, hidden_size)
embedding_output = torch.cat([text_prompt, text_embedding_output, visual_embedding_output], dim=1)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=attention_mask,
head_mask=self.get_head_mask(head_mask, self.config.num_hidden_layers),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_state = encoder_outputs.last_hidden_state if return_dict else encoder_outputs[0]
pooled_output = self.pooler(last_hidden_state)
last_hidden_state = self.dropout(last_hidden_state)
pooled_output = self.dropout(pooled_output)
if not return_dict:
return (last_hidden_state, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPooling(
last_hidden_state=last_hidden_state,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class TvpVideoGroundingHead(nn.Module):
def __init__(self, config):
super().__init__()
self.layer_0 = nn.Linear(config.hidden_size, config.hidden_size * 2)
self.layer_1 = nn.Linear(config.hidden_size * 2, 2)
self.activation_0 = nn.ReLU()
self.activation_1 = nn.Sigmoid()
def forward(self, pooler_output):
logits = self.activation_0(self.layer_0(pooler_output))
logits = self.activation_1(self.layer_1(logits))
return logits
@add_start_docstrings(
"""
Tvp Model with a video grounding head on top computing IoU, distance, and duration loss.
""",
TVP_START_DOCSTRING,
)
class TvpForVideoGrounding(TvpPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.model = TvpModel(config)
self.video_grounding_head = TvpVideoGroundingHead(config)
self.post_init()
@add_start_docstrings_to_model_forward(TVP_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TvpVideoGroundingOutput, config_class=TvpConfig)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
labels: Tuple[torch.Tensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
interpolate_pos_encoding: bool = False,
):
r"""
labels (`torch.FloatTensor` of shape `(batch_size, 3)`, *optional*):
The labels contains duration, start time, and end time of the video corresponding to the text.
Returns:
Examples:
```python
>>> import torch
>>> from transformers import AutoConfig, AutoTokenizer, TvpForVideoGrounding
>>> model = TvpForVideoGrounding.from_pretrained("Jiqing/tiny-random-tvp")
>>> tokenizer = AutoTokenizer.from_pretrained("Jiqing/tiny-random-tvp")
>>> pixel_values = torch.rand(1, 1, 3, 448, 448)
>>> text_inputs = tokenizer("This is an example input", return_tensors="pt")
>>> output = model(text_inputs.input_ids, pixel_values, text_inputs.attention_mask)
```"""
return_dict = return_dict if return_dict is not None else self.config.return_dict
outputs = self.model(
input_ids,
pixel_values,
attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
interpolate_pos_encoding=interpolate_pos_encoding,
)
pooler_output = outputs[1]
logits = self.video_grounding_head(pooler_output)
loss = None
if labels is not None:
criterion = TvpLoss(["iou", "distance", "duration"])
criterion.to(self.device)
loss_dict = criterion(logits, labels)
loss = (
loss_dict["iou"]
+ self.config.distance_loss_weight * loss_dict["distance"]
+ self.config.duration_loss_weight * loss_dict["duration"]
)
if not return_dict:
outputs = (logits,) + outputs[2:]
if loss is not None:
outputs = (loss,) + outputs
return outputs
return TvpVideoGroundingOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/tvp/configuration_tvp.py | # coding=utf-8
# Copyright 2023 The Intel AIA Team Authors, and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License=, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing=, software
# distributed under the License is distributed on an "AS IS" BASIS=,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND=, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TVP model configuration"""
import copy
from ...configuration_utils import PretrainedConfig
from ...utils import logging
from ...utils.backbone_utils import verify_backbone_config_arguments
from ..auto import CONFIG_MAPPING
logger = logging.get_logger(__name__)
class TvpConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`TvpModel`]. It is used to instantiate an Tvp
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the Tvp
[Intel/tvp-base](https://huggingface.co/Intel/tvp-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
backbone_config (`PretrainedConfig` or `dict`, *optional*):
The configuration of the backbone model.
backbone (`str`, *optional*):
Name of backbone to use when `backbone_config` is `None`. If `use_pretrained_backbone` is `True`, this
will load the corresponding pretrained weights from the timm or transformers library. If `use_pretrained_backbone`
is `False`, this loads the backbone's config and uses that to initialize the backbone with random weights.
use_pretrained_backbone (`bool`, *optional*, defaults to `False`):
Whether to use pretrained weights for the backbone.
use_timm_backbone (`bool`, *optional*, defaults to `False`):
Whether to load `backbone` from the timm library. If `False`, the backbone is loaded from the transformers
library.
backbone_kwargs (`dict`, *optional*):
Keyword arguments to be passed to AutoBackbone when loading from a checkpoint
e.g. `{'out_indices': (0, 1, 2, 3)}`. Cannot be specified if `backbone_config` is set.
distance_loss_weight (`float`, *optional*, defaults to 1.0):
The weight of distance loss.
duration_loss_weight (`float`, *optional*, defaults to 0.1):
The weight of duration loss.
visual_prompter_type (`str`, *optional*, defaults to `"framepad"`):
Visual prompt type. The type of padding. Framepad means padding on each frame. Should be one of "framepad"
or "framedownpad"
visual_prompter_apply (`str`, *optional*, defaults to `"replace"`):
The way of applying visual prompt. Replace means use the value of prompt to change the original value in
visual inputs. Should be one of "replace", or "add", or "remove".
visual_prompt_size (`int`, *optional*, defaults to 96):
The size of visual prompt.
max_img_size (`int`, *optional*, defaults to 448):
The maximum size of frame.
num_frames (`int`, *optional*, defaults to 48):
The number of frames extracted from a video.
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the Tvp text model. Defines the number of different tokens that can be represented by
the `inputs_ids` passed when calling [`TvpModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
max_grid_col_position_embeddings (`int`, *optional*, defaults to 100):
The largest number of horizontal patches from a video frame.
max_grid_row_position_embeddings (`int`, *optional*, defaults to 100):
The largest number of vertical patches from a video frame.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability of hidden layers.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` `"quick_gelu"` are supported.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability of attention layers.
"""
model_type = "tvp"
def __init__(
self,
backbone_config=None,
backbone=None,
use_pretrained_backbone=False,
use_timm_backbone=False,
backbone_kwargs=None,
distance_loss_weight=1.0,
duration_loss_weight=0.1,
visual_prompter_type="framepad",
visual_prompter_apply="replace",
visual_prompt_size=96,
max_img_size=448,
num_frames=48,
vocab_size=30522,
hidden_size=768,
intermediate_size=3072,
num_hidden_layers=12,
num_attention_heads=12,
max_position_embeddings=512,
max_grid_col_position_embeddings=100,
max_grid_row_position_embeddings=100,
hidden_dropout_prob=0.1,
hidden_act="gelu",
layer_norm_eps=1e-12,
initializer_range=0.02,
attention_probs_dropout_prob=0.1,
**kwargs,
):
super().__init__(**kwargs)
if backbone_config is None and backbone is None:
logger.info("`backbone_config` is `None`. Initializing the config with the default `ResNet` backbone.")
backbone_config = CONFIG_MAPPING["resnet"](out_features=["stage4"])
elif isinstance(backbone_config, dict):
backbone_model_type = backbone_config.get("model_type")
config_class = CONFIG_MAPPING[backbone_model_type]
backbone_config = config_class.from_dict(backbone_config)
verify_backbone_config_arguments(
use_timm_backbone=use_timm_backbone,
use_pretrained_backbone=use_pretrained_backbone,
backbone=backbone,
backbone_config=backbone_config,
backbone_kwargs=backbone_kwargs,
)
self.backbone_config = backbone_config
self.backbone = backbone
self.use_pretrained_backbone = use_pretrained_backbone
self.use_timm_backbone = use_timm_backbone
self.backbone_kwargs = backbone_kwargs
self.distance_loss_weight = distance_loss_weight
self.duration_loss_weight = duration_loss_weight
self.visual_prompter_type = visual_prompter_type
self.visual_prompter_apply = visual_prompter_apply
self.visual_prompt_size = visual_prompt_size
self.max_img_size = max_img_size
self.num_frames = num_frames
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.intermediate_size = intermediate_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.max_position_embeddings = max_position_embeddings
self.max_grid_col_position_embeddings = max_grid_col_position_embeddings
self.max_grid_row_position_embeddings = max_grid_row_position_embeddings
self.layer_norm_eps = layer_norm_eps
self.hidden_dropout_prob = hidden_dropout_prob
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.attention_probs_dropout_prob = attention_probs_dropout_prob
@classmethod
def from_backbone_config(cls, backbone_config: PretrainedConfig, **kwargs):
"""Instantiate a [`TvpConfig`] (or a derived class) from a pre-trained backbone model configuration.
Args:
backbone_config ([`PretrainedConfig`]):
The backbone configuration.
Returns:
[`TvpConfig`]: An instance of a configuration object
"""
return cls(backbone_config=backbone_config, **kwargs)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = copy.deepcopy(self.__dict__)
if output["backbone_config"] is not None:
output["backbone_config"] = self.backbone_config.to_dict()
output["model_type"] = self.__class__.model_type
return output
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/tvp/image_processing_tvp.py | # coding=utf-8
# Copyright 2023 The Intel AIA Team Authors, and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License=, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing=, software
# distributed under the License is distributed on an "AS IS" BASIS=,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND=, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for TVP."""
from typing import Dict, Iterable, List, Optional, Tuple, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
PaddingMode,
flip_channel_order,
pad,
resize,
to_channel_dimension_format,
)
from ...image_utils import (
IMAGENET_STANDARD_MEAN,
IMAGENET_STANDARD_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
is_valid_image,
to_numpy_array,
valid_images,
validate_preprocess_arguments,
)
from ...utils import TensorType, filter_out_non_signature_kwargs, is_vision_available, logging
if is_vision_available():
import PIL
logger = logging.get_logger(__name__)
# Copied from transformers.models.vivit.image_processing_vivit.make_batched
def make_batched(videos) -> List[List[ImageInput]]:
if isinstance(videos, (list, tuple)) and isinstance(videos[0], (list, tuple)) and is_valid_image(videos[0][0]):
return videos
elif isinstance(videos, (list, tuple)) and is_valid_image(videos[0]):
return [videos]
elif is_valid_image(videos):
return [[videos]]
raise ValueError(f"Could not make batched video from {videos}")
def get_resize_output_image_size(
input_image: np.ndarray,
max_size: int = 448,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> Tuple[int, int]:
height, width = get_image_size(input_image, input_data_format)
if height >= width:
ratio = width * 1.0 / height
new_height = max_size
new_width = new_height * ratio
else:
ratio = height * 1.0 / width
new_width = max_size
new_height = new_width * ratio
size = (int(new_height), int(new_width))
return size
class TvpImageProcessor(BaseImageProcessor):
r"""
Constructs a Tvp image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by the
`do_resize` parameter in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `{"longest_edge": 448}`):
Size of the output image after resizing. The longest edge of the image will be resized to
`size["longest_edge"]` while maintaining the aspect ratio of the original image. Can be overriden by
`size` in the `preprocess` method.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BILINEAR`):
Resampling filter to use if resizing the image. Can be overridden by the `resample` parameter in the
`preprocess` method.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether to center crop the image to the specified `crop_size`. Can be overridden by the `do_center_crop`
parameter in the `preprocess` method.
crop_size (`Dict[str, int]`, *optional*, defaults to `{"height": 448, "width": 448}`):
Size of the image after applying the center crop. Can be overridden by the `crop_size` parameter in the
`preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Defines the scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter
in the `preprocess` method.
do_pad (`bool`, *optional*, defaults to `True`):
Whether to pad the image. Can be overridden by the `do_pad` parameter in the `preprocess` method.
pad_size (`Dict[str, int]`, *optional*, defaults to `{"height": 448, "width": 448}`):
Size of the image after applying the padding. Can be overridden by the `pad_size` parameter in the
`preprocess` method.
constant_values (`Union[float, Iterable[float]]`, *optional*, defaults to 0):
The fill value to use when padding the image.
pad_mode (`PaddingMode`, *optional*, defaults to `PaddingMode.CONSTANT`):
Use what kind of mode in padding.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method.
do_flip_channel_order (`bool`, *optional*, defaults to `True`):
Whether to flip the color channels from RGB to BGR. Can be overridden by the `do_flip_channel_order`
parameter in the `preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BILINEAR,
do_center_crop: bool = True,
crop_size: Dict[str, int] = None,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_pad: bool = True,
pad_size: Dict[str, int] = None,
constant_values: Union[float, Iterable[float]] = 0,
pad_mode: PaddingMode = PaddingMode.CONSTANT,
do_normalize: bool = True,
do_flip_channel_order: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"longest_edge": 448}
crop_size = crop_size if crop_size is not None else {"height": 448, "width": 448}
pad_size = pad_size if pad_size is not None else {"height": 448, "width": 448}
self.do_resize = do_resize
self.size = size
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_pad = do_pad
self.pad_size = pad_size
self.constant_values = constant_values
self.pad_mode = pad_mode
self.do_normalize = do_normalize
self.do_flip_channel_order = do_flip_channel_order
self.image_mean = image_mean if image_mean is not None else IMAGENET_STANDARD_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_STANDARD_STD
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BILINEAR,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Size of the output image. If `size` is of the form `{"height": h, "width": w}`, the output image will
have the size `(h, w)`. If `size` is of the form `{"longest_edge": s}`, the output image will have its
longest edge of length `s` while keeping the aspect ratio of the original image.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BILINEAR`):
Resampling filter to use when resiizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
size = get_size_dict(size, default_to_square=False)
if "height" in size and "width" in size:
output_size = (size["height"], size["width"])
elif "longest_edge" in size:
output_size = get_resize_output_image_size(image, size["longest_edge"], input_data_format)
else:
raise ValueError(f"Size must have 'height' and 'width' or 'longest_edge' as keys. Got {size.keys()}")
return resize(
image,
size=output_size,
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
def pad_image(
self,
image: np.ndarray,
pad_size: Dict[str, int] = None,
constant_values: Union[float, Iterable[float]] = 0,
pad_mode: PaddingMode = PaddingMode.CONSTANT,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
):
"""
Pad an image with zeros to the given size.
Args:
image (`np.ndarray`):
Image to pad.
pad_size (`Dict[str, int]`)
Size of the output image with pad.
constant_values (`Union[float, Iterable[float]]`)
The fill value to use when padding the image.
pad_mode (`PaddingMode`)
The pad mode, default to PaddingMode.CONSTANT
data_format (`ChannelDimension` or `str`, *optional*)
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
height, width = get_image_size(image, channel_dim=input_data_format)
max_height = pad_size.get("height", height)
max_width = pad_size.get("width", width)
pad_right, pad_bottom = max_width - width, max_height - height
if pad_right < 0 or pad_bottom < 0:
raise ValueError("The padding size must be greater than image size")
padding = ((0, pad_bottom), (0, pad_right))
padded_image = pad(
image,
padding,
mode=pad_mode,
constant_values=constant_values,
data_format=data_format,
input_data_format=input_data_format,
)
return padded_image
def _preprocess_image(
self,
image: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: Dict[str, int] = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_pad: bool = True,
pad_size: Dict[str, int] = None,
constant_values: Union[float, Iterable[float]] = None,
pad_mode: PaddingMode = None,
do_normalize: bool = None,
do_flip_channel_order: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
data_format: Optional[ChannelDimension] = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""Preprocesses a single image."""
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_pad=do_pad,
size_divisibility=pad_size, # here the pad() method simply requires the pad_size argument.
do_center_crop=do_center_crop,
crop_size=crop_size,
do_resize=do_resize,
size=size,
resample=resample,
)
# All transformations expect numpy arrays.
image = to_numpy_array(image)
if do_resize:
image = self.resize(image=image, size=size, resample=resample, input_data_format=input_data_format)
if do_center_crop:
image = self.center_crop(image, size=crop_size, input_data_format=input_data_format)
if do_rescale:
image = self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
if do_normalize:
image = self.normalize(
image=image.astype(np.float32), mean=image_mean, std=image_std, input_data_format=input_data_format
)
if do_pad:
image = self.pad_image(
image=image,
pad_size=pad_size,
constant_values=constant_values,
pad_mode=pad_mode,
input_data_format=input_data_format,
)
# the pretrained checkpoints assume images are BGR, not RGB
if do_flip_channel_order:
image = flip_channel_order(image=image, input_data_format=input_data_format)
image = to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format)
return image
@filter_out_non_signature_kwargs()
def preprocess(
self,
videos: Union[ImageInput, List[ImageInput], List[List[ImageInput]]],
do_resize: bool = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: Dict[str, int] = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_pad: bool = None,
pad_size: Dict[str, int] = None,
constant_values: Union[float, Iterable[float]] = None,
pad_mode: PaddingMode = None,
do_normalize: bool = None,
do_flip_channel_order: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
videos (`ImageInput` or `List[ImageInput]` or `List[List[ImageInput]]`):
Frames to preprocess.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after applying resize.
resample (`PILImageResampling`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. This can be one of the enum `PILImageResampling`, Only
has an effect if `do_resize` is set to `True`.
do_center_crop (`bool`, *optional*, defaults to `self.do_centre_crop`):
Whether to centre crop the image.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the image after applying the centre crop.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_pad (`bool`, *optional*, defaults to `True`):
Whether to pad the image. Can be overridden by the `do_pad` parameter in the `preprocess` method.
pad_size (`Dict[str, int]`, *optional*, defaults to `{"height": 448, "width": 448}`):
Size of the image after applying the padding. Can be overridden by the `pad_size` parameter in the
`preprocess` method.
constant_values (`Union[float, Iterable[float]]`, *optional*, defaults to 0):
The fill value to use when padding the image.
pad_mode (`PaddingMode`, *optional*, defaults to "PaddingMode.CONSTANT"):
Use what kind of mode in padding.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
do_flip_channel_order (`bool`, *optional*, defaults to `self.do_flip_channel_order`):
Whether to flip the channel order of the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the inferred channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
resample = resample if resample is not None else self.resample
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_pad = do_pad if do_pad is not None else self.do_pad
pad_size = pad_size if pad_size is not None else self.pad_size
constant_values = constant_values if constant_values is not None else self.constant_values
pad_mode = pad_mode if pad_mode else self.pad_mode
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
do_flip_channel_order = (
do_flip_channel_order if do_flip_channel_order is not None else self.do_flip_channel_order
)
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
size = size if size is not None else self.size
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size")
if not valid_images(videos):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
videos = make_batched(videos)
videos = [
np.array(
[
self._preprocess_image(
image=img,
do_resize=do_resize,
size=size,
resample=resample,
do_center_crop=do_center_crop,
crop_size=crop_size,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_pad=do_pad,
pad_size=pad_size,
constant_values=constant_values,
pad_mode=pad_mode,
do_normalize=do_normalize,
do_flip_channel_order=do_flip_channel_order,
image_mean=image_mean,
image_std=image_std,
data_format=data_format,
input_data_format=input_data_format,
)
for img in video
]
)
for video in videos
]
data = {"pixel_values": videos}
return BatchFeature(data=data, tensor_type=return_tensors)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/tvp/__init__.py | # coding=utf-8
# Copyright 2023 The Intel AIA Team Authors, and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License=, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing=, software
# distributed under the License is distributed on an "AS IS" BASIS=,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND=, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {
"configuration_tvp": ["TvpConfig"],
"processing_tvp": ["TvpProcessor"],
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_tvp"] = ["TvpImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tvp"] = [
"TvpModel",
"TvpPreTrainedModel",
"TvpForVideoGrounding",
]
if TYPE_CHECKING:
from .configuration_tvp import (
TvpConfig,
)
from .processing_tvp import TvpProcessor
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_tvp import TvpImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tvp import (
TvpForVideoGrounding,
TvpModel,
TvpPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/llava_next_video/modeling_llava_next_video.py | # 🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
# This file was automatically generated from src/transformers/models/llava_next_video/modular_llava_next_video.py.
# Do NOT edit this file manually as any edits will be overwritten by the generation of
# the file from the modular. If any change should be done, please apply the change to the
# modular_llava_next_video.py file directly. One of our CI enforces this.
# 🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
# coding=utf-8
# Copyright 2024 HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import numpy as np
import torch
from torch import nn
from ...activations import ACT2FN
from ...generation import GenerationMixin
from ...image_processing_utils import select_best_resolution
from ...modeling_outputs import ModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from ..auto import AutoModel, AutoModelForCausalLM
from .configuration_llava_next_video import LlavaNextVideoConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "LlavaNextVideoConfig"
@dataclass
class LlavaNextVideoCausalLMOutputWithPast(ModelOutput):
"""
Base class for LlavaNextVideo causal language model (or autoregressive) outputs.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss (for next-token prediction).
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`)
Contains pre-computed hidden-states (key and values in the self-attention blocks) that can be used (see
`past_key_values` input) to speed up sequential decoding.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
image_hidden_states (`torch.FloatTensor`, *optional*):
A `torch.FloatTensor` of size (batch_size * num_patches, num_images, sequence_length, hidden_size)`.
image_hidden_states of the model produced by the vision encoder and after projecting the last hidden state.
video_hidden_states (`torch.FloatTensor`, *optional*):
A `torch.FloatTensor` of size `(batch_size * num_frames, num_videos, sequence_length, hidden_size)`.
video_hidden_states of the model produced by the vision encoder and after projecting the last hidden state.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
image_hidden_states: Optional[torch.FloatTensor] = None
video_hidden_states: Optional[torch.FloatTensor] = None
class LlavaNextVideoPooler(nn.Module):
def __init__(self, config):
super().__init__()
mode = config.spatial_pool_mode
stride = config.spatial_pool_stride
out_channels = getattr(config, "spatial_pool_out_channels", config.vision_config.hidden_size)
self.image_size = (config.vision_config.image_size // config.vision_config.patch_size) ** 2
if mode == "average":
self.pool = nn.AvgPool2d(kernel_size=stride, stride=stride)
elif mode == "max":
self.pool = nn.MaxPool2d(kernel_size=stride, stride=stride)
elif mode == "conv":
self.pool = nn.Conv2d(
in_channels=config.vision_config.hidden_size,
out_channels=out_channels,
kernel_size=stride,
stride=stride,
)
else:
raise ValueError(f"Unknown pooling mode: {mode}. Has to be one of [`average`, `max`, `conv`]")
def forward(self, image_features):
ori_width = int(math.sqrt(image_features.shape[1] * self.image_size // self.image_size))
ori_height = int(ori_width * self.image_size // self.image_size)
batch_size, _, dim = image_features.shape
image_features_spatial = image_features.view(batch_size, ori_height, ori_height, dim).permute(0, 3, 1, 2)
image_features_spatial_pool = self.pool(image_features_spatial)
return image_features_spatial_pool.flatten(2).transpose(1, 2).contiguous()
class LlavaNextVideoMultiModalProjector(nn.Module):
def __init__(self, config: LlavaNextVideoConfig):
super().__init__()
self.linear_1 = nn.Linear(config.vision_config.hidden_size, config.text_config.hidden_size, bias=True)
self.act = ACT2FN[config.projector_hidden_act]
self.linear_2 = nn.Linear(config.text_config.hidden_size, config.text_config.hidden_size, bias=True)
def forward(self, image_features):
hidden_states = self.linear_1(image_features)
hidden_states = self.act(hidden_states)
hidden_states = self.linear_2(hidden_states)
return hidden_states
LLAVA_NEXT_VIDEO_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`LlavaNextVideoConfig`] or [`LlavaNextVideoVisionConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
@add_start_docstrings(
"The bare LLaMA Model outputting raw hidden-states without any specific head on top.",
LLAVA_NEXT_VIDEO_START_DOCSTRING,
)
class LlavaNextVideoPreTrainedModel(PreTrainedModel):
config_class = LlavaNextVideoConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
_no_split_modules = ["LlavaNextVideoVisionAttention"]
_skip_keys_device_placement = "past_key_values"
_supports_cache_class = True
_supports_flash_attn_2 = True
_supports_sdpa = True
def _init_weights(self, module):
# important: this ported version of LlavaNextVideo isn't meant for training from scratch - only
# inference and fine-tuning - so the proper init weights code has been removed - the original codebase
# https://github.com/haotian-liu/LLaVA/tree/main/llava_next_video should serve for that purpose
std = (
self.config.initializer_range
if hasattr(self.config, "initializer_range")
else self.config.text_config.initializer_range
)
if hasattr(module, "class_embedding"):
module.class_embedding.data.normal_(mean=0.0, std=std)
if isinstance(module, (nn.Linear, nn.Conv2d)):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
def get_anyres_image_grid_shape(image_size, grid_pinpoints, patch_size):
"""
Calculate the shape of the image patch grid after the preprocessing for images of any resolution.
Args:
image_size (`tuple`):
The size of the input image in the format (width, height).
grid_pinpoints (`List`):
A list containing possible resolutions. Each item in the list should be a tuple or list
of the form `(height, width)`.
patch_size (`int`):
The size of each image patch.
Returns:
tuple: The shape of the image patch grid in the format (width, height).
"""
if not isinstance(grid_pinpoints, list):
raise TypeError("grid_pinpoints should be a list of tuples or lists")
# ! VERY IMPORTANT if image_size is tensor, must convert to into tuple, otherwise it will cause wrong calculate
if not isinstance(image_size, (list, tuple)):
if not isinstance(image_size, (torch.Tensor, np.ndarray)):
raise TypeError(
f"image_size invalid type: {type(image_size)} not valid, should be either list, tuple, np.ndarray or tensor"
)
image_size = image_size.tolist()
height, width = select_best_resolution(image_size, grid_pinpoints)
return height // patch_size, width // patch_size
def image_size_to_num_patches(image_size, grid_pinpoints, patch_size: int):
"""
Calculate the number of patches after the preprocessing for images of any resolution.
Args:
image_size (`torch.LongTensor` or `np.ndarray` or `Tuple[int, int]`):
The size of the input image in the format (height, width). ?
grid_pinpoints (`List`):
A list containing possible resolutions. Each item in the list should be a tuple or list
of the form `(height, width)`.
patch_size (`int`):
The size of each image patch.
Returns:
int: the number of patches
"""
if not isinstance(grid_pinpoints, list):
raise TypeError("grid_pinpoints should be a list of tuples or lists")
# ! VERY IMPORTANT if image_size is tensor, must convert to into tuple, otherwise it will cause wrong calculate
if not isinstance(image_size, (list, tuple)):
if not isinstance(image_size, (torch.Tensor, np.ndarray)):
raise TypeError(f"image_size invalid type {type(image_size)} with value {image_size}")
image_size = image_size.tolist()
best_resolution = select_best_resolution(image_size, grid_pinpoints)
height, width = best_resolution
num_patches = 0
# consider change to ceil(height/patch_size)*ceil(width/patch_size) + 1
for i in range(0, height, patch_size):
for j in range(0, width, patch_size):
num_patches += 1
# add the base patch
num_patches += 1
return num_patches
def unpad_image(tensor, original_size):
"""
Unpads a PyTorch tensor of a padded and resized image.
Args:
tensor (`torch.Tensor`):
The image tensor, assumed to be of shape (num_channels, height, width).
original_size (`tuple`):
The original size of the image (height, width).
Returns:
`torch.Tensor`: The unpadded image tensor.
"""
if not isinstance(original_size, (list, tuple)):
if not isinstance(original_size, (torch.Tensor, np.ndarray)):
raise TypeError(
f"image_size invalid type: {type(original_size)} not valid, should be either list, tuple, np.ndarray or tensor"
)
original_size = original_size.tolist()
original_height, original_width = original_size
current_height, current_width = tensor.shape[1:]
original_aspect_ratio = original_width / original_height
current_aspect_ratio = current_width / current_height
if original_aspect_ratio > current_aspect_ratio:
scale_factor = current_width / original_width
new_height = int(round(original_height * scale_factor, 7))
padding = (current_height - new_height) // 2
unpadded_tensor = tensor[:, padding : current_height - padding, :]
else:
scale_factor = current_height / original_height
new_width = int(round(original_width * scale_factor, 7))
padding = (current_width - new_width) // 2
unpadded_tensor = tensor[:, :, padding : current_width - padding]
return unpadded_tensor
LLAVA_NEXT_VIDEO_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, image_size, image_size)):
The tensors corresponding to the input images. Pixel values can be obtained using
[`AutoImageProcessor`]. See [`LlavaNextVideoImageProcessor.__call__`] for details. [`LlavaProcessor`] uses
[`LlavaNextVideoImageProcessor`] for processing images.
image_sizes (`torch.LongTensor` of shape `(batch_size, 2)`, *optional*):
The sizes of the images in the batch, being (height, width) for each image.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
If `past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`. [What are position IDs?](../glossary#position-ids)
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
vision_feature_layer (`int`, *optional*, defaults to -2):
The index of the layer to select the vision feature.
vision_feature_select_strategy (`str`, *optional*, defaults to `"default"`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`. If `"default"`, the CLS token is removed from the vision features.
If `"full"`, the full vision features are used.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
cache_position (`torch.LongTensor` of shape `(sequence_length)`, *optional*):
Indices depicting the position of the input sequence tokens in the sequence. Contrarily to `position_ids`,
this tensor is not affected by padding. It is used to update the cache in the correct position and to infer
the complete sequence length.
"""
@add_start_docstrings(
"""The LLAVA-NeXT model which consists of a vision backbone and a language model.""",
LLAVA_NEXT_VIDEO_START_DOCSTRING,
)
class LlavaNextVideoForConditionalGeneration(LlavaNextVideoPreTrainedModel, GenerationMixin):
def __init__(
self,
config: LlavaNextVideoConfig,
):
super().__init__(config)
self.vision_tower = AutoModel.from_config(config.vision_config)
self.multi_modal_projector = LlavaNextVideoMultiModalProjector(config)
embed_std = 1 / math.sqrt(config.text_config.hidden_size)
self.image_newline = nn.Parameter(torch.randn(config.text_config.hidden_size, dtype=self.dtype) * embed_std)
self.vocab_size = config.text_config.vocab_size
self.language_model = AutoModelForCausalLM.from_config(config.text_config)
self.pad_token_id = self.config.pad_token_id if self.config.pad_token_id is not None else -1
self._padding_side = "left" # set it to left by default, user can use setter to change padding_sides
self.vision_resampler = LlavaNextVideoPooler(config)
self.post_init()
@property
def padding_side(self):
return self._padding_side
@padding_side.setter
def padding_side(self, padding_side: str):
if padding_side not in ["left", "right"]:
raise ValueError(f"{padding_side} is not `left` or `right`.")
self._padding_side = padding_side
def get_input_embeddings(self):
return self.language_model.get_input_embeddings()
def set_input_embeddings(self, value):
self.language_model.set_input_embeddings(value)
def get_output_embeddings(self):
return self.language_model.get_output_embeddings()
def set_output_embeddings(self, new_embeddings):
self.language_model.set_output_embeddings(new_embeddings)
def set_decoder(self, decoder):
self.language_model.set_decoder(decoder)
def get_decoder(self):
return self.language_model.get_decoder()
def tie_weights(self):
return self.language_model.tie_weights()
def resize_token_embeddings(self, new_num_tokens: Optional[int] = None, pad_to_multiple_of=None) -> nn.Embedding:
model_embeds = self.language_model.resize_token_embeddings(new_num_tokens, pad_to_multiple_of)
# update vocab size
self.config.text_config.vocab_size = model_embeds.num_embeddings
self.vocab_size = model_embeds.num_embeddings
return model_embeds
def _merge_input_ids_with_image_features(
self,
image_features,
feature_lens,
inputs_embeds,
input_ids,
attention_mask,
position_ids=None,
labels=None,
image_token_index=None,
ignore_index=-100,
):
"""
Merge input_ids with with image features into final embeddings
Args:
image_features (`torch.Tensor` of shape `(all_feature_lens, embed_dim)`):
All vision vectors of all images in the batch
feature_lens (`torch.LongTensor` of shape `(num_images)`):
The length of visual embeddings of each image as stacked in `image_features`
inputs_embeds (`torch.Tensor` of shape `(batch_size, sequence_length, embed_dim)`):
Token embeddings before merging with visual embeddings
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Input_ids of tokens, possibly filled with image token
attention_mask (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Mask to avoid performing attention on padding token indices.
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`.
labels (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*)
:abels need to be recalculated to support training (if provided)
image_token_index (`int`, *optional*)
Token id used to indicate the special "image" token. Defaults to `config.image_token_index`
ignore_index (`int`, *optional*)
Value that is used to pad `labels` and will be ignored when calculated loss. Default: -100.
Returns:
final_embedding, final_attention_mask, position_ids, final_labels
Explanation:
each image has variable length embeddings, with length specified by feature_lens
image_features is concatenation of all visual embed vectors
task: fill each <image> with the correct number of visual embeddings
Example:
X (5 patches), Y (3 patches), Z (8)
X, Y are in the same sequence (in-context learning)
if right padding
input_ids: [
a b c d e f X g h i j k Y l m
o p q r Z s t u v _ _ _ _ _ _
]
input_ids should be: [
a b c d e f X X X X X g h i j k Y Y Y l m
o p q r Z Z Z Z Z Z Z Z s t u v _ _ _ _ _
]
labels should be: [
a b c d e f _ _ _ _ _ g h i j k _ _ _ l m
o p q r _ _ _ _ _ _ _ _ s t u v _ _ _ _ _
]
elif left padding
input_ids: [
a b c d e f X g h i j k Y l m
_ _ _ _ _ _ o p q r Z s t u v
]
input_ids should be: [
a b c d e f X X X X X g h i j k Y Y Y l m
_ _ _ _ _ o p q r Z Z Z Z Z Z Z Z s t u v
]
labels should be: [
a b c d e f _ _ _ _ _ g h i j k _ _ _ l m
_ _ _ _ _ o p q r _ _ _ _ _ _ _ _ s t u v
]
Edge cases:
* If tokens are same but image token sizes are different, then cannot infer left or right padding
```python
cat_img = Image.open(requests.get("http://images.cocodataset.org/val2017/000000039769.jpg", stream=True).raw)
chart_img = Image.open(requests.get("https://github.com/haotian-liu/LLaVA/blob/1a91fc274d7c35a9b50b3cb29c4247ae5837ce39/images/llava_v1_5_radar.jpg?raw=true", stream=True).raw)
prompts = [
"[INST] <image>\nWhat is shown in this image? [/INST]",
"[INST] <image>\nWhat is shown in this image? [/INST]",
]
inputs = processor(prompts, [chart_img, cat_img], return_tensors='pt', padding=True).to("cuda")
chart_img has 2634 tokens, while cat_img has 2340 tokens
```
input_ids: [
a b c d X g h
i j Y k l m n
]
where X is 3 tokens while Y is 5, this mean after merge
if left-padding (batched generation)
input_ids should be: [
_ _ a b c d X X X g h
i j Y Y Y Y Y k l m n
]
elif (right padding) (training)
input_ids should be: [
a b c d X X X g h _ _
i j Y Y Y Y Y k l m n
]
"""
image_token_index = image_token_index if image_token_index is not None else self.config.image_token_index
ignore_index = ignore_index if ignore_index is not None else self.config.ignore_index
if self.training and self.padding_side == "left":
logger.warning_once(
"Padding side is set to 'left' but the model is in training mode. For training "
"it is recommended to set `model.padding_side='right' and `processor.tokenizer.padding_side='right'`. "
"If that's intended, ignore this warning"
)
if not self.training and self.padding_side == "right":
logger.warning_once(
"Padding side is set to 'right' but the model is in inference mode. For correct "
"generation results, please set `model.padding_side='left'` and `processor.tokenizer.padding_side='left'`. "
"If that's intended, ignore this warning"
)
with torch.no_grad():
# ! in llava 1.6, number of patches is variable
num_images = feature_lens.size(0)
num_image_features, embed_dim = image_features.shape
if feature_lens.sum() != num_image_features:
raise ValueError(f"{feature_lens=} / {feature_lens.sum()} != {image_features.shape=}")
batch_size = input_ids.shape[0]
_left_padding = torch.any(attention_mask[:, 0] == 0)
_right_padding = torch.any(attention_mask[:, -1] == 0)
left_padding = self.padding_side == "left"
if batch_size > 1:
if _left_padding and _right_padding:
raise ValueError(f"both side of attention_mask has zero, invalid. {attention_mask}")
elif _right_padding and left_padding:
left_padding = False
elif _left_padding and not left_padding:
left_padding = True
# Whether to turn off right padding
# 1. Create a mask to know where special image tokens are
special_image_token_mask = input_ids == image_token_index
# special_image_token_mask: [bsz, seqlen]
num_special_image_tokens = torch.sum(special_image_token_mask, dim=-1)
# num_special_image_tokens: [bsz]
# Reserve for padding of num_images
total_num_special_image_tokens = torch.sum(special_image_token_mask)
if total_num_special_image_tokens != num_images:
raise ValueError(
f"Number of image tokens in input_ids ({total_num_special_image_tokens}) different from num_images ({num_images})."
)
# Compute the maximum embed dimension
# max_image_feature_lens is max_feature_lens per batch
feature_lens = feature_lens.to(input_ids.device)
feature_lens_batch = feature_lens.split(num_special_image_tokens.tolist(), dim=0)
feature_lens_batch_sum = torch.tensor([x.sum() for x in feature_lens_batch], device=input_ids.device)
embed_sequence_lengths = (
(attention_mask == 1).long().sum(-1) - num_special_image_tokens + feature_lens_batch_sum
)
max_embed_dim = embed_sequence_lengths.max()
batch_indices, non_image_indices = torch.where((input_ids != image_token_index) & (attention_mask == 1))
# 2. Compute the positions where text should be written
# Calculate new positions for text tokens in merged image-text sequence.
# `special_image_token_mask` identifies image tokens. Each image token will be replaced by `nb_text_tokens_per_images` text tokens.
# `torch.cumsum` computes how each image token shifts subsequent text token positions.
# - 1 to adjust for zero-based indexing, as `cumsum` inherently increases indices by one.
# ! instead of special_image_token_mask * (num_image_patches - 1)
# special_image_token_mask * (num_feature_len - 1)
special_image_token_mask = special_image_token_mask.long()
special_image_token_mask[special_image_token_mask == 1] = feature_lens - 1
new_token_positions = torch.cumsum((special_image_token_mask + 1), -1) - 1
if left_padding:
# shift right token positions so that they are ending at the same number
# the below here was incorrect? new_token_positions += new_token_positions[:, -1].max() - new_token_positions[:, -1:]
new_token_positions += max_embed_dim - 1 - new_token_positions[:, -1:]
text_to_overwrite = new_token_positions[batch_indices, non_image_indices]
# 3. Create the full embedding, already padded to the maximum position
final_embedding = torch.zeros(
batch_size, max_embed_dim, embed_dim, dtype=inputs_embeds.dtype, device=inputs_embeds.device
)
final_attention_mask = torch.zeros(
batch_size, max_embed_dim, dtype=attention_mask.dtype, device=inputs_embeds.device
)
final_input_ids = torch.full(
(batch_size, max_embed_dim), self.pad_token_id, dtype=input_ids.dtype, device=inputs_embeds.device
)
# In case the Vision model or the Language model has been offloaded to CPU, we need to manually
# set the corresponding tensors into their correct target device.
target_device = inputs_embeds.device
batch_indices, non_image_indices, text_to_overwrite = (
batch_indices.to(target_device),
non_image_indices.to(target_device),
text_to_overwrite.to(target_device),
)
attention_mask = attention_mask.to(target_device)
input_ids = input_ids.to(target_device)
# 4. Fill the embeddings based on the mask. If we have ["hey" "<image>", "how", "are"]
# we need to index copy on [0, 577, 578, 579] for the text and [1:576] for the image features
final_embedding[batch_indices, text_to_overwrite] = inputs_embeds[batch_indices, non_image_indices]
final_attention_mask[batch_indices, text_to_overwrite] = attention_mask[batch_indices, non_image_indices]
final_input_ids[batch_indices, text_to_overwrite] = input_ids[batch_indices, non_image_indices]
final_labels = None
if labels is not None:
labels = labels.to(target_device)
final_labels = torch.full_like(final_attention_mask, ignore_index).to(torch.long)
final_labels[batch_indices, text_to_overwrite] = labels[batch_indices, non_image_indices]
# 5. Fill the embeddings corresponding to the images. Anything that is not `text_positions` needs filling (#29835)
with torch.no_grad():
image_to_overwrite = torch.full(
(batch_size, max_embed_dim), True, dtype=torch.bool, device=inputs_embeds.device
)
image_to_overwrite[batch_indices, text_to_overwrite] = False
embed_indices = torch.arange(max_embed_dim).unsqueeze(0).to(target_device)
embed_indices = embed_indices.expand(batch_size, max_embed_dim)
embed_seq_lens = embed_sequence_lengths[:, None].to(target_device)
if left_padding:
# exclude padding on the left
max_embed_dim = max_embed_dim.to(target_device)
val = (max_embed_dim - embed_indices) <= embed_seq_lens
else:
# exclude padding on the right
val = embed_indices < embed_seq_lens
image_to_overwrite &= val
if image_to_overwrite.sum() != num_image_features:
raise ValueError(
f"{image_to_overwrite.sum()=} != {num_image_features=} The input provided to the model are wrong. "
f"The number of image tokens is {torch.sum(special_image_token_mask)} while"
f" the number of image given to the model is {num_images}. "
f"This prevents correct indexing and breaks batch generation."
)
final_embedding[image_to_overwrite] = image_features.contiguous().reshape(-1, embed_dim).to(target_device)
final_attention_mask |= image_to_overwrite
position_ids = (final_attention_mask.cumsum(-1) - 1).masked_fill_((final_attention_mask == 0), 1)
return final_embedding, final_attention_mask, position_ids, final_labels, final_input_ids
def pack_image_features(self, image_features, image_sizes, vision_feature_select_strategy, image_newline=None):
"""
Reshape, unpad and then pack each image_feature into a single image_features tensor containing all visual vectors.
Args:
image_features (`List[torch.Tensor]` of length num_images, each of shape `(num_patches, image_length, embed_dim)`)
List of image feature tensor, each contains all the visual feature of all patches.
image_sizes (`torch.Tensor` of shape `(num_images, 2)`)
Actual image size of each images (H, W).
vision_feature_select_strategy (`str`)
The feature selection strategy used to select the vision feature from the vision backbone.
image_newline (`torch.Tensor` of shape `(embed_dim)`)
New line embedding vector.
Returns:
image_features (`torch.Tensor` of shape `(all_feat_len, embed_dim)`)
feature_lens (`List[int]`)
token length of each image in image_features
"""
new_image_features = []
feature_lens = []
for image_idx, image_feature in enumerate(image_features):
if image_feature.shape[0] > 1:
base_image_feature = image_feature[0]
image_feature = image_feature[1:]
height = width = self.config.vision_config.image_size // self.config.vision_config.patch_size
if vision_feature_select_strategy == "default":
expected_num_patches = height * width
elif vision_feature_select_strategy == "full":
expected_num_patches = height * width + 1
if expected_num_patches != base_image_feature.shape[0]:
raise ValueError("The number of patches is not consistent with the image size.")
num_patch_height, num_patch_width = get_anyres_image_grid_shape(
image_sizes[image_idx],
self.config.image_grid_pinpoints,
self.config.vision_config.image_size,
)
image_feature = image_feature.view(num_patch_height, num_patch_width, height, width, -1)
image_feature = image_feature.permute(4, 0, 2, 1, 3).contiguous()
image_feature = image_feature.flatten(1, 2).flatten(2, 3)
image_feature = unpad_image(image_feature, image_sizes[image_idx])
if image_newline is not None:
image_feature = torch.cat(
(
image_feature,
image_newline[:, None, None].expand(*image_feature.shape[:-1], 1).to(image_feature.dtype),
),
dim=-1,
)
image_feature = image_feature.flatten(1, 2).transpose(0, 1)
image_feature = torch.cat((base_image_feature, image_feature), dim=0)
else:
image_feature = image_feature[0]
if image_newline is not None:
image_feature = torch.cat((image_feature, image_newline[None].to(image_feature)), dim=0)
new_image_features.append(image_feature)
feature_lens.append(image_feature.size(0))
image_features = torch.cat(new_image_features, dim=0)
feature_lens = torch.tensor(feature_lens, dtype=torch.long, device=image_features.device)
return image_features, feature_lens
def get_image_features(
self,
pixel_values: torch.FloatTensor,
image_sizes: torch.Tensor,
vision_feature_layer: int,
vision_feature_select_strategy: str,
):
"""
Obtains image last hidden states from the vision tower and apply multimodal projection.
Args:
pixel_values (`torch.FloatTensor]` of shape `(batch_size, num_patches, channels, height, width)`)
The tensors corresponding to the input images.
image_sizes (`torch.Tensor` of shape `(num_images, 2)`)
Actual image size of each images (H, W).
vision_feature_layer (`int`):
The index of the layer to select the vision feature.
vision_feature_select_strategy (`str`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`
Returns:
image_features (List[`torch.Tensor`]): List of image feature tensor, each contains all the visual feature of all patches
and are of shape `(num_patches, image_length, embed_dim)`).
"""
# ! infer image_num_patches from image_sizes
image_num_patches = [
image_size_to_num_patches(
image_size=imsize,
grid_pinpoints=self.config.image_grid_pinpoints,
patch_size=self.config.vision_config.image_size,
)
for imsize in image_sizes
]
if pixel_values.dim() == 5:
# stacked if input is (batch_size, num_patches, num_channels, height, width)
_pixel_values_list = [pix_val[:num_patch] for pix_val, num_patch in zip(pixel_values, image_num_patches)]
pixel_values = torch.cat(_pixel_values_list, dim=0)
elif pixel_values.dim() != 4:
# otherwise has to be stacked from list of (num_patches, num_channels, height, width)
raise ValueError(f"pixel_values of shape {pixel_values.shape}, expect to be of 4 or 5 dimensions")
image_features = self.vision_tower(pixel_values, output_hidden_states=True)
selected_image_feature = image_features.hidden_states[vision_feature_layer]
if vision_feature_select_strategy == "default":
selected_image_feature = selected_image_feature[:, 1:]
elif vision_feature_select_strategy == "full":
selected_image_feature = selected_image_feature
image_features = self.multi_modal_projector(selected_image_feature)
image_features = torch.split(image_features, image_num_patches, dim=0)
return image_features
@add_start_docstrings_to_model_forward(LLAVA_NEXT_VIDEO_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=LlavaNextVideoCausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: torch.LongTensor = None,
pixel_values: torch.FloatTensor = None,
pixel_values_videos: torch.FloatTensor = None,
image_sizes: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
vision_feature_layer: Optional[int] = None,
vision_feature_select_strategy: Optional[str] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
num_logits_to_keep: int = 0,
) -> Union[Tuple, LlavaNextVideoCausalLMOutputWithPast]:
r"""
Args:
pixel_values_videos (`torch.FloatTensor` of shape `(batch_size, num_frames, num_channels, image_size, image_size)):
The tensors corresponding to the input videos. Pixel values can be obtained using
[`AutoImageProcessor`]. See [`LlavaNextVideoVideoProcessor.__call__`] for details. [`LlavaProcessor`] uses
[`LlavaNextVideoVideoProcessor`] for processing videos.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
num_logits_to_keep (`int`, *optional*):
Calculate logits for the last `num_logits_to_keep` tokens. If `0`, calculate logits for all
`input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
Returns:
Example:
```python
>>> from PIL import Image
>>> import requests
>>> import av
>>> from transformers import AutoProcessor, LlavaNextVideoForConditionalGeneration
>>> def read_video_pyav(container, indices):
... '''
... Decode the video with PyAV decoder.
... Args:
... container (`av.container.input.InputContainer`): PyAV container.
... indices (`List[int]`): List of frame indices to decode.
... Returns:
... result (np.ndarray): np array of decoded frames of shape (num_frames, height, width, 3).
... '''
... frames = []
... container.seek(0)
... start_index = indices[0]
... end_index = indices[-1]
... for i, frame in enumerate(container.decode(video=0)):
... if i > end_index:
... break
... if i >= start_index and i in indices:
... frames.append(frame)
... return np.stack([x.to_ndarray(format="rgb24") for x in frames])
>>> model = LlavaNextVideoForConditionalGeneration.from_pretrained("llava-hf/LLaVA-NeXT-Video-7B-hf", device_map="auto")
>>> processor = AutoProcessor.from_pretrained("llava-hf/LLaVA-NeXT-Video-7B-hf")
>>> prompt = "USER: <video>\nWhy is this video funny? ASSISTANT:"
>>> video_path = hf_hub_download(repo_id="raushan-testing-hf/videos-test", filename="sample_demo_1.mp4", repo_type="dataset")
>>> container = av.open(video_path)
>>> # sample uniformly 8 frames from the video (model was trained with 32 frames per video, but this video is short)
>>> total_frames = container.streams.video[0].frames
>>> indices = np.arange(0, total_frames, total_frames / 8).astype(int)
>>> clip = read_video_pyav(container, indices)
>>> inputs_video = processor(text=prompt, videos=clip, return_tensors="pt").to(model.device)
>>> # load an image to generate from an image
>>> prompt = "USER:<image>\nWhat is shown in this image? ASSISTANT:"
>>> url = "https://www.ilankelman.org/stopsigns/australia.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs_image = processor(text=prompt, images=image, return_tensors="pt").to(model.device)
>>> # Generate from video
>>> generate_ids = model.generate(**inputs_video, max_length=50)
>>> processor.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
"USER:\nWhy is this video funny? ASSISTANT: The humor in this video comes from the unexpected and endearing sight of a baby wearing glasses and (...)"
>>> # Generate from image
>>> generate_ids = model.generate(**inputs_image, max_length=30)
>>> processor.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
"USER: \nWhat's the content of the image? ASSISTANT: The image shows a red stop sign on a pole, with a traditional Chinese archway (...)"
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
self.vision_feature_layer = (
vision_feature_layer if vision_feature_layer is not None else self.config.vision_feature_layer
)
self.vision_feature_select_strategy = (
vision_feature_select_strategy
if vision_feature_select_strategy is not None
else self.config.vision_feature_select_strategy
)
if (input_ids is None) ^ (inputs_embeds is not None):
raise ValueError("You must specify exactly one of input_ids or inputs_embeds")
if (pixel_values is not None or pixel_values_videos is not None) and inputs_embeds is not None:
raise ValueError(
"You cannot specify both `pixel_values`/`pixel_values_videos` and `inputs_embeds` at the same time, "
"and must specify either one"
)
legacy_processing = False
if inputs_embeds is None:
inputs_embeds = self.get_input_embeddings()(input_ids)
# if the number of image/video tokens is more than image embeddings seq length, then prob we expanded it in processing
# not very reliable, but we don't expect one to actually pass 500+ images for one prompt
img_token_not_enough = (input_ids == self.config.image_token_index).sum(
1
).max() < self.config.image_seq_length
video_token_not_enough = (input_ids == self.config.video_token_index).sum(
1
).max() < self.config.video_seq_length
inputs_not_expanded = (img_token_not_enough and pixel_values is not None) or (
video_token_not_enough and pixel_values_videos is not None
)
pixels_present = input_ids.shape[-1] == 1 and (pixel_values is not None or pixel_values_videos is not None)
legacy_processing = inputs_not_expanded or pixels_present
image_features = feature_lens = None
if pixel_values is not None and pixel_values.size(0) > 0:
image_features = self.get_image_features(
pixel_values,
image_sizes,
vision_feature_layer=self.vision_feature_layer,
vision_feature_select_strategy=self.vision_feature_select_strategy,
)
image_features, feature_lens = self.pack_image_features(
image_features,
image_sizes,
self.vision_feature_select_strategy,
image_newline=self.image_newline,
)
video_features = video_feature_lens = None
if pixel_values_videos is not None and pixel_values_videos.size(0) > 0:
video_features = self.get_video_features(
pixel_values_videos,
vision_feature_layer=self.vision_feature_layer,
vision_feature_select_strategy=self.vision_feature_select_strategy,
)
video_features = [feature.flatten(0, 1) for feature in video_features]
video_feature_lens = [feature.size(0) for feature in video_features]
video_features = torch.cat(video_features, dim=0)
video_feature_lens = torch.tensor(video_feature_lens, dtype=torch.long, device=video_features.device)
if legacy_processing:
logger.warning_once(
"Expanding inputs for image.video tokens in LLaVa-NeXT-Video should be done in processing. "
"Please add `patch_size` and `vision_feature_select_strategy` to the model's processing config or set directly "
"with `processor.patch_size = {{patch_size}}` and processor.vision_feature_select_strategy = {{vision_feature_select_strategy}}`. "
"Using processors without these attributes in the config is deprecated and will throw an error in v4.47."
)
if input_ids.shape[1] != 1:
iterator = (
(image_features, feature_lens, self.config.image_token_index),
(video_features, video_feature_lens, self.config.video_token_index),
)
for features, lens, special_token in iterator:
if features is not None:
(
inputs_embeds,
attention_mask,
position_ids,
labels,
input_ids,
) = self._merge_input_ids_with_image_features(
features,
lens,
inputs_embeds,
input_ids,
attention_mask,
position_ids,
labels=labels,
image_token_index=special_token,
)
cache_position = torch.arange(attention_mask.shape[1], device=attention_mask.device)
else:
# Retrieve the first layer to inspect the logits and mask out the hidden states that are set to 0
first_layer_past_key_value = past_key_values[0][0][:, :, :, 0]
# Sum all dimensions of head_dim (-2) to avoid random errors such as: https://github.com/huggingface/transformers/pull/28032#issuecomment-1863691941
batch_index, non_attended_tokens = torch.where(first_layer_past_key_value.float().sum(-2) == 0)
# Get the target length
target_length = input_ids.shape[1]
past_length = first_layer_past_key_value.shape[-1]
extended_attention_mask = torch.ones(
(attention_mask.shape[0], past_length),
dtype=attention_mask.dtype,
device=attention_mask.device,
)
# Filter out only the tokens that can be un-attended, this can happen
# if one uses Llava + Fused modules where the cache on the
# first iteration is already big enough, or if one passes custom cache
valid_indices = non_attended_tokens < extended_attention_mask.size(-1)
new_batch_index = batch_index[valid_indices]
new_non_attended_tokens = non_attended_tokens[valid_indices]
# Zero-out the places where we don't need to attend
extended_attention_mask[new_batch_index, new_non_attended_tokens] = 0
attention_mask = torch.cat((extended_attention_mask, attention_mask[:, -target_length:]), dim=1)
position_ids = torch.sum(attention_mask, dim=1).unsqueeze(-1) - 1
cache_position = torch.arange(attention_mask.shape[1], device=attention_mask.device)[-target_length:]
# TODO: @raushan retain only the new behavior after v4.47
else:
if image_features is not None:
n_image_tokens = (input_ids == self.config.image_token_index).sum().item()
n_image_features = image_features.shape[0]
if n_image_tokens != n_image_features:
raise ValueError(
f"Image features and image tokens do not match: tokens: {n_image_tokens}, features {n_image_features}"
)
special_image_mask = (
(input_ids == self.config.image_token_index)
.unsqueeze(-1)
.expand_as(inputs_embeds)
.to(inputs_embeds.device)
)
image_features = image_features.to(inputs_embeds.device, inputs_embeds.dtype)
inputs_embeds = inputs_embeds.masked_scatter(special_image_mask, image_features)
if video_features is not None:
n_video_tokens = (input_ids == self.config.video_token_index).sum().item()
n_video_features = video_features.shape[0]
if n_video_tokens != n_video_features:
raise ValueError(
f"Video features and video tokens do not match: tokens: {n_video_tokens}, features {n_video_features}"
)
special_image_mask = (
(input_ids == self.config.video_token_index)
.unsqueeze(-1)
.expand_as(inputs_embeds)
.to(inputs_embeds.device)
)
video_features = video_features.to(inputs_embeds.device, inputs_embeds.dtype)
inputs_embeds = inputs_embeds.masked_scatter(special_image_mask, video_features)
outputs = self.language_model(
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
cache_position=cache_position,
num_logits_to_keep=num_logits_to_keep,
)
logits = outputs[0]
loss = None
if labels is not None:
# Shift so that tokens < n predict n
if attention_mask is not None:
# we use the input attention mask to shift the logits and labels, because it is 2D.
# we also crop attn mask in case it is longer, which happens in PrefixTuning with peft
shift_attention_mask = attention_mask[:, -(logits.shape[1] - 1) :].to(logits.device)
shift_logits = logits[..., :-1, :][shift_attention_mask.to(logits.device) != 0].contiguous()
shift_labels = labels[..., 1:][shift_attention_mask.to(labels.device) != 0].contiguous()
else:
shift_logits = logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = nn.CrossEntropyLoss()
loss = loss_fct(
shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1).to(shift_logits.device)
)
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return LlavaNextVideoCausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
image_hidden_states=image_features if pixel_values is not None else None,
video_hidden_states=video_features if pixel_values_videos is not None else None,
)
def prepare_inputs_for_generation(
self,
input_ids,
past_key_values=None,
inputs_embeds=None,
pixel_values=None,
pixel_values_videos=None,
image_sizes=None,
attention_mask=None,
cache_position=None,
num_logits_to_keep=None,
**kwargs,
):
# Overwritten -- extra custom processing
model_inputs = self.language_model.prepare_inputs_for_generation(
input_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
attention_mask=attention_mask,
cache_position=cache_position,
num_logits_to_keep=num_logits_to_keep,
**kwargs,
)
# If we're in cached decoding stage, pixel values should be None because input ids do not contain special image token anymore
# Otherwise we need pixel values to be passed to model
if cache_position[0] == 0:
model_inputs["pixel_values"] = pixel_values
model_inputs["pixel_values_videos"] = pixel_values_videos
model_inputs["image_sizes"] = image_sizes
return model_inputs
def get_video_features(
self, pixel_values: torch.FloatTensor, vision_feature_layer: int, vision_feature_select_strategy: str
):
"""
Obtains video last hidden states from the vision tower and apply multimodal projection.
Args:
pixel_values (`torch.FloatTensor]` of shape `(batch_size, num_frames, channels, height, width)`)
The tensors corresponding to the input video.
vision_feature_layer (`int`):
The index of the layer to select the vision feature.
vision_feature_select_strategy (`str`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`
Returns:
video_features (List[`torch.Tensor`]): List of video feature tensor, each contains all the visual feature of all patches
and are of shape `(num_videos, video_length, embed_dim)`).
"""
batch_size, frames, channels, height, width = pixel_values.shape
pixel_values = pixel_values.reshape(batch_size * frames, channels, height, width)
video_features = self.vision_tower(pixel_values, output_hidden_states=True)
selected_video_features = video_features.hidden_states[vision_feature_layer]
if vision_feature_select_strategy == "default":
selected_video_features = selected_video_features[:, 1:]
elif vision_feature_select_strategy == "full":
selected_video_features = selected_video_features
# Same as image features except that video has pooling layer
video_features = self.vision_resampler(selected_video_features)
video_features = self.multi_modal_projector(video_features)
video_features = torch.split(video_features, frames, dim=0)
return video_features
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/llava_next_video/modular_llava_next_video.py | # coding=utf-8
# Copyright 2024 HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from transformers.models.llava_next.modeling_llava_next import (
LlavaNextCausalLMOutputWithPast,
LlavaNextForConditionalGeneration,
image_size_to_num_patches,
)
from ...configuration_utils import PretrainedConfig
from ...utils import (
logging,
)
from ..auto import CONFIG_MAPPING, AutoConfig
logger = logging.get_logger(__name__)
class LlavaNextVideoConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`LlavaNextVideoForConditionalGeneration`]. It is used to instantiate an
Llava-NeXT model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the [llava-hf/LLaVA-NeXT-Video-7B-hf](https://huggingface.co/llava-hf/LLaVA-NeXT-Video-7B-hf)
model.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vision_config (`Union[AutoConfig, dict]`, *optional*, defaults to `CLIPVisionConfig`):
The config object or dictionary of the vision backbone.
text_config (`Union[AutoConfig, dict]`, *optional*, defaults to `LlamaConfig`):
The config object or dictionary of the text backbone.
ignore_index (`int`, *optional*, defaults to -100):
The ignore index for the loss function.
image_token_index (`int`, *optional*, defaults to 32001):
The image token index to encode the image prompt.
projector_hidden_act (`str`, *optional*, defaults to `"gelu"`):
The activation function used by the multimodal projector.
vision_feature_select_strategy (`str`, *optional*, defaults to `"default"`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`. If `"default"`, the CLS token is removed from the vision features.
If `"full"`, the full vision features are used.
vision_feature_layer (`int`, *optional*, defaults to -2):
The index of the layer to select the vision feature.
image_grid_pinpoints (`List`, *optional*, defaults to `[[336, 672], [672, 336], [672, 672], [1008, 336], [336, 1008]]`):
A list of possible resolutions to use for processing high resolution images. Each item in the list should be a tuple or list
of the form `(height, width)`.
tie_word_embeddings (`bool`, *optional*, defaults to `False`):
Whether the model's input and output word embeddings should be tied.
video_token_index (`int`, *optional*, defaults to 32000):
The video token index to encode the image prompt.
spatial_pool_mode (`str`, *optional*, defaults to `"average"`):
Pooling mode to use for videos. Can be "average", "max" or "conv".
spatial_pool_stride (`int`, *optional*, defaults to 2):
Stride used in the pooling layer for videos.
image_seq_length (`int`, *optional*, defaults to 576):
Sequence length of one image embedding.
video_seq_length (`int`, *optional*, defaults to 288):
Sequence length of one video embedding.
Example:
```python
>>> from transformers import LlavaNextVideoForConditionalGeneration, LlavaNextVideoConfig, CLIPVisionConfig, LlamaConfig
>>> # Initializing a CLIP-vision config
>>> vision_config = CLIPVisionConfig()
>>> # Initializing a Llama config
>>> text_config = LlamaConfig()
>>> configuration = LlavaNextVideoConfig(vision_config, text_config)
>>> model = LlavaNextVideoForConditionalGeneration(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "llava_next_video"
sub_configs = {"text_config": AutoConfig, "vision_config": AutoConfig}
def __init__(
self,
vision_config=None,
text_config=None,
ignore_index=-100,
image_token_index=32001,
projector_hidden_act="gelu",
vision_feature_select_strategy="default",
vision_feature_layer=-2,
image_grid_pinpoints=None,
tie_word_embeddings=False,
video_token_index=32000,
spatial_pool_mode="average",
spatial_pool_stride=2,
image_seq_length=576,
video_seq_length=288,
**kwargs,
):
self.video_token_index = video_token_index
self.spatial_pool_mode = spatial_pool_mode
self.spatial_pool_stride = spatial_pool_stride
self.image_seq_length = image_seq_length
self.video_seq_length = video_seq_length
self.ignore_index = ignore_index
self.image_token_index = image_token_index
self.projector_hidden_act = projector_hidden_act
if vision_feature_select_strategy not in ["default", "full"]:
raise ValueError(
"vision_feature_select_strategy should be one of 'default', 'full'."
f"Got: {vision_feature_select_strategy}"
)
self.vision_feature_select_strategy = vision_feature_select_strategy
self.vision_feature_layer = vision_feature_layer
image_grid_pinpoints = (
image_grid_pinpoints
if image_grid_pinpoints is not None
else [[336, 672], [672, 336], [672, 672], [1008, 336], [336, 1008]]
)
self.image_grid_pinpoints = image_grid_pinpoints
if isinstance(vision_config, dict):
vision_config["model_type"] = (
vision_config["model_type"] if "model_type" in vision_config else "clip_vision_model"
)
vision_config = CONFIG_MAPPING[vision_config["model_type"]](**vision_config)
elif vision_config is None:
vision_config = CONFIG_MAPPING["clip_vision_model"](
intermediate_size=4096,
hidden_size=1024,
patch_size=14,
image_size=336,
num_hidden_layers=24,
num_attention_heads=16,
vocab_size=32000,
projection_dim=768,
)
self.vision_config = vision_config
if isinstance(text_config, dict):
text_config["model_type"] = text_config["model_type"] if "model_type" in text_config else "llama"
text_config = CONFIG_MAPPING[text_config["model_type"]](**text_config)
elif text_config is None:
text_config = CONFIG_MAPPING["llama"]()
self.text_config = text_config
super().__init__(tie_word_embeddings=tie_word_embeddings, **kwargs)
@dataclass
class LlavaNextVideoCausalLMOutputWithPast(LlavaNextCausalLMOutputWithPast):
"""
video_hidden_states (`torch.FloatTensor`, *optional*):
A `torch.FloatTensor` of size `(batch_size * num_frames, num_videos, sequence_length, hidden_size)`.
video_hidden_states of the model produced by the vision encoder and after projecting the last hidden state.
"""
video_hidden_states: Optional[torch.FloatTensor] = None
class LlavaNextVideoPooler(nn.Module):
def __init__(self, config):
super().__init__()
mode = config.spatial_pool_mode
stride = config.spatial_pool_stride
out_channels = getattr(config, "spatial_pool_out_channels", config.vision_config.hidden_size)
self.image_size = (config.vision_config.image_size // config.vision_config.patch_size) ** 2
if mode == "average":
self.pool = nn.AvgPool2d(kernel_size=stride, stride=stride)
elif mode == "max":
self.pool = nn.MaxPool2d(kernel_size=stride, stride=stride)
elif mode == "conv":
self.pool = nn.Conv2d(
in_channels=config.vision_config.hidden_size,
out_channels=out_channels,
kernel_size=stride,
stride=stride,
)
else:
raise ValueError(f"Unknown pooling mode: {mode}. Has to be one of [`average`, `max`, `conv`]")
def forward(self, image_features):
ori_width = int(math.sqrt(image_features.shape[1] * self.image_size // self.image_size))
ori_height = int(ori_width * self.image_size // self.image_size)
batch_size, _, dim = image_features.shape
image_features_spatial = image_features.view(batch_size, ori_height, ori_height, dim).permute(0, 3, 1, 2)
image_features_spatial_pool = self.pool(image_features_spatial)
return image_features_spatial_pool.flatten(2).transpose(1, 2).contiguous()
class LlavaNextVideoForConditionalGeneration(LlavaNextForConditionalGeneration):
def __init__(self, config: LlavaNextVideoConfig, **super_kwargs):
super().__init__(config, **super_kwargs)
self.vision_resampler = LlavaNextVideoPooler(config)
self.post_init()
def get_image_features(
self,
pixel_values: torch.FloatTensor,
image_sizes: torch.Tensor,
vision_feature_layer: int,
vision_feature_select_strategy: str,
):
"""
Obtains image last hidden states from the vision tower and apply multimodal projection.
Args:
pixel_values (`torch.FloatTensor]` of shape `(batch_size, num_patches, channels, height, width)`)
The tensors corresponding to the input images.
image_sizes (`torch.Tensor` of shape `(num_images, 2)`)
Actual image size of each images (H, W).
vision_feature_layer (`int`):
The index of the layer to select the vision feature.
vision_feature_select_strategy (`str`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`
Returns:
image_features (List[`torch.Tensor`]): List of image feature tensor, each contains all the visual feature of all patches
and are of shape `(num_patches, image_length, embed_dim)`).
"""
# ! infer image_num_patches from image_sizes
image_num_patches = [
image_size_to_num_patches(
image_size=imsize,
grid_pinpoints=self.config.image_grid_pinpoints,
patch_size=self.config.vision_config.image_size,
)
for imsize in image_sizes
]
if pixel_values.dim() == 5:
# stacked if input is (batch_size, num_patches, num_channels, height, width)
_pixel_values_list = [pix_val[:num_patch] for pix_val, num_patch in zip(pixel_values, image_num_patches)]
pixel_values = torch.cat(_pixel_values_list, dim=0)
elif pixel_values.dim() != 4:
# otherwise has to be stacked from list of (num_patches, num_channels, height, width)
raise ValueError(f"pixel_values of shape {pixel_values.shape}, expect to be of 4 or 5 dimensions")
image_features = self.vision_tower(pixel_values, output_hidden_states=True)
selected_image_feature = image_features.hidden_states[vision_feature_layer]
if vision_feature_select_strategy == "default":
selected_image_feature = selected_image_feature[:, 1:]
elif vision_feature_select_strategy == "full":
selected_image_feature = selected_image_feature
image_features = self.multi_modal_projector(selected_image_feature)
image_features = torch.split(image_features, image_num_patches, dim=0)
return image_features
def get_video_features(
self, pixel_values: torch.FloatTensor, vision_feature_layer: int, vision_feature_select_strategy: str
):
"""
Obtains video last hidden states from the vision tower and apply multimodal projection.
Args:
pixel_values (`torch.FloatTensor]` of shape `(batch_size, num_frames, channels, height, width)`)
The tensors corresponding to the input video.
vision_feature_layer (`int`):
The index of the layer to select the vision feature.
vision_feature_select_strategy (`str`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`
Returns:
video_features (List[`torch.Tensor`]): List of video feature tensor, each contains all the visual feature of all patches
and are of shape `(num_videos, video_length, embed_dim)`).
"""
batch_size, frames, channels, height, width = pixel_values.shape
pixel_values = pixel_values.reshape(batch_size * frames, channels, height, width)
video_features = self.vision_tower(pixel_values, output_hidden_states=True)
selected_video_features = video_features.hidden_states[vision_feature_layer]
if vision_feature_select_strategy == "default":
selected_video_features = selected_video_features[:, 1:]
elif vision_feature_select_strategy == "full":
selected_video_features = selected_video_features
# Same as image features except that video has pooling layer
video_features = self.vision_resampler(selected_video_features)
video_features = self.multi_modal_projector(video_features)
video_features = torch.split(video_features, frames, dim=0)
return video_features
def forward(
self,
input_ids: torch.LongTensor = None,
pixel_values: torch.FloatTensor = None,
pixel_values_videos: torch.FloatTensor = None,
image_sizes: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
vision_feature_layer: Optional[int] = None,
vision_feature_select_strategy: Optional[str] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
num_logits_to_keep: int = 0,
) -> Union[Tuple, LlavaNextVideoCausalLMOutputWithPast]:
r"""
Args:
pixel_values_videos (`torch.FloatTensor` of shape `(batch_size, num_frames, num_channels, image_size, image_size)):
The tensors corresponding to the input videos. Pixel values can be obtained using
[`AutoImageProcessor`]. See [`LlavaNextVideoVideoProcessor.__call__`] for details. [`LlavaProcessor`] uses
[`LlavaNextVideoVideoProcessor`] for processing videos.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
num_logits_to_keep (`int`, *optional*):
Calculate logits for the last `num_logits_to_keep` tokens. If `0`, calculate logits for all
`input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
Returns:
Example:
```python
>>> from PIL import Image
>>> import requests
>>> import av
>>> from transformers import AutoProcessor, LlavaNextVideoForConditionalGeneration
>>> def read_video_pyav(container, indices):
... '''
... Decode the video with PyAV decoder.
... Args:
... container (`av.container.input.InputContainer`): PyAV container.
... indices (`List[int]`): List of frame indices to decode.
... Returns:
... result (np.ndarray): np array of decoded frames of shape (num_frames, height, width, 3).
... '''
... frames = []
... container.seek(0)
... start_index = indices[0]
... end_index = indices[-1]
... for i, frame in enumerate(container.decode(video=0)):
... if i > end_index:
... break
... if i >= start_index and i in indices:
... frames.append(frame)
... return np.stack([x.to_ndarray(format="rgb24") for x in frames])
>>> model = LlavaNextVideoForConditionalGeneration.from_pretrained("llava-hf/LLaVA-NeXT-Video-7B-hf", device_map="auto")
>>> processor = AutoProcessor.from_pretrained("llava-hf/LLaVA-NeXT-Video-7B-hf")
>>> prompt = "USER: <video>\nWhy is this video funny? ASSISTANT:"
>>> video_path = hf_hub_download(repo_id="raushan-testing-hf/videos-test", filename="sample_demo_1.mp4", repo_type="dataset")
>>> container = av.open(video_path)
>>> # sample uniformly 8 frames from the video (model was trained with 32 frames per video, but this video is short)
>>> total_frames = container.streams.video[0].frames
>>> indices = np.arange(0, total_frames, total_frames / 8).astype(int)
>>> clip = read_video_pyav(container, indices)
>>> inputs_video = processor(text=prompt, videos=clip, return_tensors="pt").to(model.device)
>>> # load an image to generate from an image
>>> prompt = "USER:<image>\nWhat is shown in this image? ASSISTANT:"
>>> url = "https://www.ilankelman.org/stopsigns/australia.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs_image = processor(text=prompt, images=image, return_tensors="pt").to(model.device)
>>> # Generate from video
>>> generate_ids = model.generate(**inputs_video, max_length=50)
>>> processor.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
"USER:\nWhy is this video funny? ASSISTANT: The humor in this video comes from the unexpected and endearing sight of a baby wearing glasses and (...)"
>>> # Generate from image
>>> generate_ids = model.generate(**inputs_image, max_length=30)
>>> processor.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
"USER: \nWhat's the content of the image? ASSISTANT: The image shows a red stop sign on a pole, with a traditional Chinese archway (...)"
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
self.vision_feature_layer = (
vision_feature_layer if vision_feature_layer is not None else self.config.vision_feature_layer
)
self.vision_feature_select_strategy = (
vision_feature_select_strategy
if vision_feature_select_strategy is not None
else self.config.vision_feature_select_strategy
)
if (input_ids is None) ^ (inputs_embeds is not None):
raise ValueError("You must specify exactly one of input_ids or inputs_embeds")
if (pixel_values is not None or pixel_values_videos is not None) and inputs_embeds is not None:
raise ValueError(
"You cannot specify both `pixel_values`/`pixel_values_videos` and `inputs_embeds` at the same time, "
"and must specify either one"
)
legacy_processing = False
if inputs_embeds is None:
inputs_embeds = self.get_input_embeddings()(input_ids)
# if the number of image/video tokens is more than image embeddings seq length, then prob we expanded it in processing
# not very reliable, but we don't expect one to actually pass 500+ images for one prompt
img_token_not_enough = (input_ids == self.config.image_token_index).sum(
1
).max() < self.config.image_seq_length
video_token_not_enough = (input_ids == self.config.video_token_index).sum(
1
).max() < self.config.video_seq_length
inputs_not_expanded = (img_token_not_enough and pixel_values is not None) or (
video_token_not_enough and pixel_values_videos is not None
)
pixels_present = input_ids.shape[-1] == 1 and (pixel_values is not None or pixel_values_videos is not None)
legacy_processing = inputs_not_expanded or pixels_present
image_features = feature_lens = None
if pixel_values is not None and pixel_values.size(0) > 0:
image_features = self.get_image_features(
pixel_values,
image_sizes,
vision_feature_layer=self.vision_feature_layer,
vision_feature_select_strategy=self.vision_feature_select_strategy,
)
image_features, feature_lens = self.pack_image_features(
image_features,
image_sizes,
self.vision_feature_select_strategy,
image_newline=self.image_newline,
)
video_features = video_feature_lens = None
if pixel_values_videos is not None and pixel_values_videos.size(0) > 0:
video_features = self.get_video_features(
pixel_values_videos,
vision_feature_layer=self.vision_feature_layer,
vision_feature_select_strategy=self.vision_feature_select_strategy,
)
video_features = [feature.flatten(0, 1) for feature in video_features]
video_feature_lens = [feature.size(0) for feature in video_features]
video_features = torch.cat(video_features, dim=0)
video_feature_lens = torch.tensor(video_feature_lens, dtype=torch.long, device=video_features.device)
if legacy_processing:
logger.warning_once(
"Expanding inputs for image.video tokens in LLaVa-NeXT-Video should be done in processing. "
"Please add `patch_size` and `vision_feature_select_strategy` to the model's processing config or set directly "
"with `processor.patch_size = {{patch_size}}` and processor.vision_feature_select_strategy = {{vision_feature_select_strategy}}`. "
"Using processors without these attributes in the config is deprecated and will throw an error in v4.47."
)
if input_ids.shape[1] != 1:
iterator = (
(image_features, feature_lens, self.config.image_token_index),
(video_features, video_feature_lens, self.config.video_token_index),
)
for features, lens, special_token in iterator:
if features is not None:
(
inputs_embeds,
attention_mask,
position_ids,
labels,
input_ids,
) = self._merge_input_ids_with_image_features(
features,
lens,
inputs_embeds,
input_ids,
attention_mask,
position_ids,
labels=labels,
image_token_index=special_token,
)
cache_position = torch.arange(attention_mask.shape[1], device=attention_mask.device)
else:
# Retrieve the first layer to inspect the logits and mask out the hidden states that are set to 0
first_layer_past_key_value = past_key_values[0][0][:, :, :, 0]
# Sum all dimensions of head_dim (-2) to avoid random errors such as: https://github.com/huggingface/transformers/pull/28032#issuecomment-1863691941
batch_index, non_attended_tokens = torch.where(first_layer_past_key_value.float().sum(-2) == 0)
# Get the target length
target_length = input_ids.shape[1]
past_length = first_layer_past_key_value.shape[-1]
extended_attention_mask = torch.ones(
(attention_mask.shape[0], past_length),
dtype=attention_mask.dtype,
device=attention_mask.device,
)
# Filter out only the tokens that can be un-attended, this can happen
# if one uses Llava + Fused modules where the cache on the
# first iteration is already big enough, or if one passes custom cache
valid_indices = non_attended_tokens < extended_attention_mask.size(-1)
new_batch_index = batch_index[valid_indices]
new_non_attended_tokens = non_attended_tokens[valid_indices]
# Zero-out the places where we don't need to attend
extended_attention_mask[new_batch_index, new_non_attended_tokens] = 0
attention_mask = torch.cat((extended_attention_mask, attention_mask[:, -target_length:]), dim=1)
position_ids = torch.sum(attention_mask, dim=1).unsqueeze(-1) - 1
cache_position = torch.arange(attention_mask.shape[1], device=attention_mask.device)[-target_length:]
# TODO: @raushan retain only the new behavior after v4.47
else:
if image_features is not None:
n_image_tokens = (input_ids == self.config.image_token_index).sum().item()
n_image_features = image_features.shape[0]
if n_image_tokens != n_image_features:
raise ValueError(
f"Image features and image tokens do not match: tokens: {n_image_tokens}, features {n_image_features}"
)
special_image_mask = (
(input_ids == self.config.image_token_index)
.unsqueeze(-1)
.expand_as(inputs_embeds)
.to(inputs_embeds.device)
)
image_features = image_features.to(inputs_embeds.device, inputs_embeds.dtype)
inputs_embeds = inputs_embeds.masked_scatter(special_image_mask, image_features)
if video_features is not None:
n_video_tokens = (input_ids == self.config.video_token_index).sum().item()
n_video_features = video_features.shape[0]
if n_video_tokens != n_video_features:
raise ValueError(
f"Video features and video tokens do not match: tokens: {n_video_tokens}, features {n_video_features}"
)
special_image_mask = (
(input_ids == self.config.video_token_index)
.unsqueeze(-1)
.expand_as(inputs_embeds)
.to(inputs_embeds.device)
)
video_features = video_features.to(inputs_embeds.device, inputs_embeds.dtype)
inputs_embeds = inputs_embeds.masked_scatter(special_image_mask, video_features)
outputs = self.language_model(
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
cache_position=cache_position,
num_logits_to_keep=num_logits_to_keep,
)
logits = outputs[0]
loss = None
if labels is not None:
# Shift so that tokens < n predict n
if attention_mask is not None:
# we use the input attention mask to shift the logits and labels, because it is 2D.
# we also crop attn mask in case it is longer, which happens in PrefixTuning with peft
shift_attention_mask = attention_mask[:, -(logits.shape[1] - 1) :].to(logits.device)
shift_logits = logits[..., :-1, :][shift_attention_mask.to(logits.device) != 0].contiguous()
shift_labels = labels[..., 1:][shift_attention_mask.to(labels.device) != 0].contiguous()
else:
shift_logits = logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = nn.CrossEntropyLoss()
loss = loss_fct(
shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1).to(shift_logits.device)
)
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return LlavaNextVideoCausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
image_hidden_states=image_features if pixel_values is not None else None,
video_hidden_states=video_features if pixel_values_videos is not None else None,
)
def prepare_inputs_for_generation(
self,
input_ids,
past_key_values=None,
inputs_embeds=None,
pixel_values=None,
pixel_values_videos=None,
image_sizes=None,
attention_mask=None,
cache_position=None,
num_logits_to_keep=None,
**kwargs,
):
# Overwritten -- extra custom processing
model_inputs = self.language_model.prepare_inputs_for_generation(
input_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
attention_mask=attention_mask,
cache_position=cache_position,
num_logits_to_keep=num_logits_to_keep,
**kwargs,
)
# If we're in cached decoding stage, pixel values should be None because input ids do not contain special image token anymore
# Otherwise we need pixel values to be passed to model
if cache_position[0] == 0:
model_inputs["pixel_values"] = pixel_values
model_inputs["pixel_values_videos"] = pixel_values_videos
model_inputs["image_sizes"] = image_sizes
return model_inputs
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/llava_next_video/convert_llava_next_video_weights_to_hf.py | # Copyright 2024 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert LLaVa-NeXT-Video checkpoints from the original repository.
URL: https://github.com/LLaVA-VL/LLaVA-NeXT/tree/inference
"""
import argparse
import glob
import json
from pathlib import Path
import torch
from accelerate import init_empty_weights
from huggingface_hub import hf_hub_download, snapshot_download
from safetensors import safe_open
from transformers import (
AddedToken,
AutoConfig,
AutoTokenizer,
LlavaNextImageProcessor,
LlavaNextVideoConfig,
LlavaNextVideoForConditionalGeneration,
LlavaNextVideoImageProcessor,
LlavaNextVideoProcessor,
)
KEYS_TO_MODIFY_MAPPING = {
"model.vision_tower.": "",
".vision_resampler": "", # all lmms-lab models do avg pooling, so no vision_resampler
"model.mm_projector": "multi_modal_projector",
"model": "model.model",
"vision_model.model": "vision_model",
"lm_head": "language_model.lm_head",
"model.model": "language_model.model",
"multi_modal_projector.0": "multi_modal_projector.linear_1",
"multi_modal_projector.2": "multi_modal_projector.linear_2",
"language_model.model.image_newline": "image_newline",
}
# {{SYSTEM_PROMPT}} USER: <image>\n{{PROMPT}} ASSISTANT:" assistant end with "</s> "
chat_vicuna = (
"{% for message in messages %}"
"{% if message['role'] == 'system' %}"
"{{ message['content'][0]['text'] }}"
"{% else %}"
"{{ message['role'].upper() + ': '}}"
"{% endif %}"
"{# Render all images first #}"
"{% for content in message['content'] | selectattr('type', 'equalto', 'image') %}"
"{{ '<image>\n' }}"
"{% endfor %}"
"{# Render all text next #}"
"{% for content in message['content'] | selectattr('type', 'equalto', 'text') %}"
"{{ content['text'] + ' '}}"
"{% endfor %}"
"{% endfor %}"
"{% if add_generation_prompt %}"
"{{ 'ASSISTANT:' }}"
"{% endif %}"
)
# "[INST] <image>\nWhat is shown in this image? [/INST]" assistant end with "</s> "
chat_mistral = (
"{% for message in messages %}"
"{% if message['role'] == 'user' %}"
"{{ '[INST] ' }}"
"{# Render all images first #}"
"{% for content in message['content'] | selectattr('type', 'equalto', 'image') %}"
"{{ '<image>\n' }}"
"{% endfor %}"
"{# Render all text next #}"
"{% for content in message['content'] | selectattr('type', 'equalto', 'text') %}"
"{{ content['text'] }}"
"{% endfor %}"
"{{' [/INST]' }}"
"{% elif message['role'] == 'assistant' %}"
r"{{ ' ' + message['content'][0]['text'] + '<\s> '}}"
"{% else %}"
"{{ raise_exception('Only user and assistant roles are supported!') }}"
"{% endif %}"
"{% endfor %}"
)
# "<|im_start|>system\nAnswer the questions.<|im_end|><|im_start|>user\n<image>\nWhat is shown in this image?<|im_end|><|im_start|>assistant\n"
chat_yi = (
"{% for message in messages %}"
"{{'<|im_start|>' + message['role'] + '\n'}}"
"{# Render all images first #}"
"{% for content in message['content'] | selectattr('type', 'equalto', 'image') %}"
"{{ '<image>\n' }}"
"{% endfor %}"
"{# Render all text next #}"
"{% for content in message['content'] | selectattr('type', 'equalto', 'text') %}"
"{{ content['text'] }}"
"{% endfor %}"
"{{'<|im_end|>' + '\n'}}"
"{% endfor %}"
"{% if add_generation_prompt %}"
"{{ '<|im_start|>assistant\n' }}"
"{% endif %}"
)
model2template = {
"lmms-lab/LLaVA-NeXT-Video-7B-32K": chat_mistral,
"lmms-lab/LLaVA-NeXT-Video-7B": chat_vicuna,
"lmms-lab/LLaVA-NeXT-Video-7B-DPO": chat_vicuna,
"lmms-lab/LLaVA-NeXT-Video-34B": chat_yi,
"lmms-lab/LLaVA-NeXT-Video-34B-DPO": chat_yi,
}
def load_original_state_dict(model_id):
directory_path = snapshot_download(repo_id=model_id, allow_patterns=["*.safetensors"])
original_state_dict = {}
for path in glob.glob(f"{directory_path}/*"):
if path.endswith(".safetensors"):
with safe_open(path, framework="pt", device="cpu") as f:
for key in f.keys():
original_state_dict[key] = f.get_tensor(key)
return original_state_dict
def convert_state_dict_to_hf(state_dict):
new_state_dict = {}
for key, value in state_dict.items():
if key.endswith(".inv_freq"):
continue
for key_to_modify, new_key in KEYS_TO_MODIFY_MAPPING.items():
if key_to_modify in key:
key = key.replace(key_to_modify, new_key)
new_state_dict[key] = value.to(torch.bfloat16)
return new_state_dict
def convert_llava_to_hf(model_id, pytorch_dump_folder_path, push_to_hub=False):
# load original config
filepath = hf_hub_download(repo_id=model_id, filename="config.json", repo_type="model")
with open(filepath) as f:
data = json.load(f)
print(data)
if model_id == "lmms-lab/LLaVA-NeXT-Video-7B-32K":
text_model_id = "mistralai/Mistral-7B-Instruct-v0.2"
video_token_index = 32000
image_token_index = 32001
overwrite_text_config = {}
elif model_id in ["lmms-lab/LLaVA-NeXT-Video-7B", "lmms-lab/LLaVA-NeXT-Video-7B-DPO"]:
text_model_id = "lmsys/vicuna-7b-v1.5"
video_token_index = 32000
image_token_index = 32001
overwrite_text_config = {"factor": 2.0, "type": "linear"}
elif model_id in ["lmms-lab/LLaVA-NeXT-Video-34B", "lmms-lab/LLaVA-NeXT-Video-34B-DPO"]:
text_model_id = "NousResearch/Nous-Hermes-2-Yi-34B"
video_token_index = 64000
image_token_index = 64001
overwrite_text_config = {}
else:
raise ValueError("Incorrect checkpoint referenced. Text model-id not identified!")
vision_model_id = data["mm_vision_tower"]
torch.set_default_dtype(torch.bfloat16)
text_config = AutoConfig.from_pretrained(text_model_id)
text_config = text_config.to_dict()
text_config.update(overwrite_text_config)
tokenizer = AutoTokenizer.from_pretrained(text_model_id, use_fast=True, padding_side="left")
tokenizer.add_tokens(AddedToken("<video>", special=True, normalized=False), special_tokens=True)
tokenizer.add_tokens(AddedToken("<image>", special=True, normalized=False), special_tokens=True)
image_processor = LlavaNextImageProcessor.from_pretrained(vision_model_id)
video_processor = LlavaNextVideoImageProcessor.from_pretrained(vision_model_id)
processor = LlavaNextVideoProcessor(
tokenizer=tokenizer,
video_processor=video_processor,
image_processor=image_processor,
chat_template=model2template[model_id],
)
config = LlavaNextVideoConfig(
text_config=text_config,
image_grid_pinpoints=image_processor.image_grid_pinpoints,
use_image_newline_parameter=True,
video_token_index=video_token_index,
image_token_index=image_token_index,
)
with init_empty_weights():
model = LlavaNextVideoForConditionalGeneration(config)
# load original state dict
state_dict = load_original_state_dict(model_id)
state_dict = convert_state_dict_to_hf(state_dict)
model.load_state_dict(state_dict, assign=True, strict=True)
# See https://nlp.stanford.edu/~johnhew/vocab-expansion.html for why we get mean/stdev this way to expand embeddings
pre_expansion_embeddings = model.language_model.model.embed_tokens.weight.data
mu = torch.mean(pre_expansion_embeddings, dim=0).float()
n = pre_expansion_embeddings.size()[0]
sigma = ((pre_expansion_embeddings - mu).T @ (pre_expansion_embeddings - mu)) / n
dist = torch.distributions.multivariate_normal.MultivariateNormal(mu, covariance_matrix=1e-5 * sigma)
# We add an image token so we resize the model
# Pad to 64 for performance reasons
pad_shape = 64
vocab_size = config.text_config.vocab_size
# this one has 2 additional tokens, namely <image>, <video> and <pad>
num_tokens = vocab_size + 3
model.resize_token_embeddings(num_tokens, pad_to_multiple_of=pad_shape)
model.language_model.model.embed_tokens.weight.data[vocab_size:] = torch.stack(
tuple(
(dist.sample() for _ in range(model.language_model.model.embed_tokens.weight.data[vocab_size:].shape[0]))
),
dim=0,
)
model.language_model.lm_head.weight.data[vocab_size:] = torch.stack(
tuple((dist.sample() for _ in range(model.language_model.lm_head.weight.data[vocab_size:].shape[0]))),
dim=0,
)
if pytorch_dump_folder_path is not None:
print(f"Saving model and processor for {model_id} to {pytorch_dump_folder_path}")
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
model.save_pretrained(pytorch_dump_folder_path)
processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
repo_id = model_id.split("/")[-1]
print(f"Pushing model to hub repo: {repo_id}")
model.push_to_hub(f"llava-hf/{repo_id}-hf")
processor.push_to_hub(f"llava-hf/{repo_id}-hf")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_id",
help="Hub location of the model to convert",
default="lmms-lab/LLaVA-NeXT-Video-7B",
choices=[
"lmms-lab/LLaVA-NeXT-Video-7B",
"lmms-lab/LLaVA-NeXT-Video-7B-DPO",
"lmms-lab/LLaVA-NeXT-Video-7B-32K",
"lmms-lab/LLaVA-NeXT-Video-34B",
"lmms-lab/LLaVA-NeXT-Video-34B-DPO",
],
required=False,
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model directory."
)
parser.add_argument(
"--push_to_hub", action="store_true", help="Whether or not to push the converted model to the 🤗 hub."
)
args = parser.parse_args()
convert_llava_to_hf(args.model_id, args.pytorch_dump_folder_path, args.push_to_hub)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/llava_next_video/image_processing_llava_next_video.py | # coding=utf-8
# Copyright 2024 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for LLaVa-NeXT-Video."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
convert_to_rgb,
get_resize_output_image_size,
resize,
to_channel_dimension_format,
)
from ...image_utils import (
OPENAI_CLIP_MEAN,
OPENAI_CLIP_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
VideoInput,
infer_channel_dimension_format,
is_scaled_image,
is_valid_image,
make_list_of_images,
to_numpy_array,
validate_preprocess_arguments,
)
from ...utils import TensorType, is_vision_available, logging
logger = logging.get_logger(__name__)
if is_vision_available():
from PIL import Image
def make_batched_videos(videos) -> List[VideoInput]:
if isinstance(videos, (list, tuple)) and isinstance(videos[0], (list, tuple)) and is_valid_image(videos[0][0]):
return videos
elif isinstance(videos, (list, tuple)) and is_valid_image(videos[0]):
if isinstance(videos[0], Image.Image):
return [videos]
elif len(videos[0].shape) == 4:
return [list(video) for video in videos]
elif is_valid_image(videos) and len(videos.shape) == 4:
return [list(videos)]
raise ValueError(f"Could not make batched video from {videos}")
class LlavaNextVideoImageProcessor(BaseImageProcessor):
r"""
Constructs a LLaVa-NeXT-Video video processor. Based on [`CLIPImageProcessor`] with incorporation of processing each video frame.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by
`do_resize` in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `{"shortest_edge": 224}`):
Size of the image after resizing. The shortest edge of the image is resized to size["shortest_edge"], with
the longest edge resized to keep the input aspect ratio. Can be overridden by `size` in the `preprocess`
method.
image_grid_pinpoints (`List` *optional*, defaults to `[[672, 336], [336, 672], [672, 672], [336, 1008], [1008, 336]]`):
A list of possible resolutions to use for processing high resolution images. The best resolution is selected
based on the original size of the image. Can be overridden by `image_grid_pinpoints` in the `preprocess`
method. Not used for processinf videos.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BICUBIC`):
Resampling filter to use if resizing the image. Can be overridden by `resample` in the `preprocess` method.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether to center crop the image to the specified `crop_size`. Can be overridden by `do_center_crop` in the
`preprocess` method.
crop_size (`Dict[str, int]` *optional*, defaults to 224):
Size of the output image after applying `center_crop`. Can be overridden by `crop_size` in the `preprocess`
method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by `do_rescale` in
the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by `rescale_factor` in the `preprocess`
method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by `do_normalize` in the `preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `[0.48145466, 0.4578275, 0.40821073]`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `[0.26862954, 0.26130258, 0.27577711]`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
Can be overridden by the `image_std` parameter in the `preprocess` method.
do_convert_rgb (`bool`, *optional*, defaults to `True`):
Whether to convert the image to RGB.
"""
model_input_names = ["pixel_values_videos"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
image_grid_pinpoints: List = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_center_crop: bool = True,
crop_size: Dict[str, int] = None,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_convert_rgb: bool = True,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"shortest_edge": 224}
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else {"height": 224, "width": 224}
crop_size = get_size_dict(crop_size, default_to_square=True, param_name="crop_size")
self.do_resize = do_resize
self.size = size
self.image_grid_pinpoints = image_grid_pinpoints
self.resample = resample
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else OPENAI_CLIP_MEAN
self.image_std = image_std if image_std is not None else OPENAI_CLIP_STD
self.do_convert_rgb = do_convert_rgb
# Copied from transformers.models.clip.image_processing_clip.CLIPImageProcessor.resize with CLIP->LLaVa
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image. The shortest edge of the image is resized to size["shortest_edge"], with the longest edge
resized to keep the input aspect ratio.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Size of the output image.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resiizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
default_to_square = True
if "shortest_edge" in size:
size = size["shortest_edge"]
default_to_square = False
elif "height" in size and "width" in size:
size = (size["height"], size["width"])
else:
raise ValueError("Size must contain either 'shortest_edge' or 'height' and 'width'.")
output_size = get_resize_output_image_size(
image,
size=size,
default_to_square=default_to_square,
input_data_format=input_data_format,
)
return resize(
image,
size=output_size,
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
def _preprocess(
self,
images: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: int = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_convert_rgb: bool = None,
data_format: Optional[ChannelDimension] = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> Image.Image:
"""
Preprocess an image or batch of images. Copy of the `preprocess` method from `CLIPImageProcessor`.
Args:
images (`ImageInput`):
Batch of frames (one video) to preprocess. Expects a batch of frames with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after resizing. Shortest edge of the image is resized to size["shortest_edge"], with
the longest edge resized to keep the input aspect ratio.
resample (`int`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. This can be one of the enum `PILImageResampling`. Only
has an effect if `do_resize` is set to `True`.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the image.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the center crop. Only has an effect if `do_center_crop` is set to `True`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image.
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to use for normalization. Only has an effect if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to use for normalization. Only has an effect if `do_normalize` is set to
`True`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
images = make_list_of_images(images)
if do_convert_rgb:
images = [convert_to_rgb(image) for image in images]
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
all_images = []
for image in images:
if do_resize:
image = self.resize(image=image, size=size, resample=resample, input_data_format=input_data_format)
if do_center_crop:
image = self.center_crop(image=image, size=crop_size, input_data_format=input_data_format)
if do_rescale:
image = self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
if do_normalize:
image = self.normalize(
image=image, mean=image_mean, std=image_std, input_data_format=input_data_format
)
all_images.append(image)
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format)
for image in all_images
]
return images
def preprocess(
self,
images: VideoInput,
do_resize: bool = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: int = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_convert_rgb: bool = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Optional[ChannelDimension] = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
):
"""
Args:
images (`VideoInput`):
Videos to preprocess. Expects a single or batch of videos with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the video.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the video after resizing. Shortest edge of the video is resized to size["shortest_edge"], with
the longest edge resized to keep the input aspect ratio.
resample (`int`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the video. This can be one of the enum `PILImageResampling`. Only
has an effect if `do_resize` is set to `True`.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the video.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the center crop. Only has an effect if `do_center_crop` is set to `True`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the video.
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the video by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the video.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Frame mean to use for normalization. Only has an effect if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Frame standard deviation to use for normalization. Only has an effect if `do_normalize` is set to
`True`.
do_convert_rgb (`bool`, *optional*, defaults to `self.do_convert_rgb`):
Whether to convert the video to RGB.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
size = size if size is not None else self.size
size = get_size_dict(size, param_name="size", default_to_square=False)
resample = resample if resample is not None else self.resample
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size", default_to_square=True)
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
do_convert_rgb = do_convert_rgb if do_convert_rgb is not None else self.do_convert_rgb
images = make_batched_videos(images)
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_center_crop=do_center_crop,
crop_size=crop_size,
do_resize=do_resize,
size=size,
resample=resample,
)
# preprocess each video frame by frame
pixel_values = [
self._preprocess(
frames,
do_resize=do_resize,
size=size,
resample=resample,
do_center_crop=do_center_crop,
crop_size=crop_size,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
data_format=data_format,
input_data_format=input_data_format,
)
for frames in images
]
data = {"pixel_values_videos": pixel_values}
return BatchFeature(data=data, tensor_type=return_tensors)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/llava_next_video/configuration_llava_next_video.py | # 🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
# This file was automatically generated from src/transformers/models/llava_next_video/modular_llava_next_video.py.
# Do NOT edit this file manually as any edits will be overwritten by the generation of
# the file from the modular. If any change should be done, please apply the change to the
# modular_llava_next_video.py file directly. One of our CI enforces this.
# 🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
# coding=utf-8
# Copyright 2024 HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from ...configuration_utils import PretrainedConfig
from ..auto import CONFIG_MAPPING, AutoConfig
class LlavaNextVideoConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`LlavaNextVideoForConditionalGeneration`]. It is used to instantiate an
Llava-NeXT model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the [llava-hf/LLaVA-NeXT-Video-7B-hf](https://huggingface.co/llava-hf/LLaVA-NeXT-Video-7B-hf)
model.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vision_config (`Union[AutoConfig, dict]`, *optional*, defaults to `CLIPVisionConfig`):
The config object or dictionary of the vision backbone.
text_config (`Union[AutoConfig, dict]`, *optional*, defaults to `LlamaConfig`):
The config object or dictionary of the text backbone.
ignore_index (`int`, *optional*, defaults to -100):
The ignore index for the loss function.
image_token_index (`int`, *optional*, defaults to 32001):
The image token index to encode the image prompt.
projector_hidden_act (`str`, *optional*, defaults to `"gelu"`):
The activation function used by the multimodal projector.
vision_feature_select_strategy (`str`, *optional*, defaults to `"default"`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`. If `"default"`, the CLS token is removed from the vision features.
If `"full"`, the full vision features are used.
vision_feature_layer (`int`, *optional*, defaults to -2):
The index of the layer to select the vision feature.
image_grid_pinpoints (`List`, *optional*, defaults to `[[336, 672], [672, 336], [672, 672], [1008, 336], [336, 1008]]`):
A list of possible resolutions to use for processing high resolution images. Each item in the list should be a tuple or list
of the form `(height, width)`.
tie_word_embeddings (`bool`, *optional*, defaults to `False`):
Whether the model's input and output word embeddings should be tied.
video_token_index (`int`, *optional*, defaults to 32000):
The video token index to encode the image prompt.
spatial_pool_mode (`str`, *optional*, defaults to `"average"`):
Pooling mode to use for videos. Can be "average", "max" or "conv".
spatial_pool_stride (`int`, *optional*, defaults to 2):
Stride used in the pooling layer for videos.
image_seq_length (`int`, *optional*, defaults to 576):
Sequence length of one image embedding.
video_seq_length (`int`, *optional*, defaults to 288):
Sequence length of one video embedding.
Example:
```python
>>> from transformers import LlavaNextVideoForConditionalGeneration, LlavaNextVideoConfig, CLIPVisionConfig, LlamaConfig
>>> # Initializing a CLIP-vision config
>>> vision_config = CLIPVisionConfig()
>>> # Initializing a Llama config
>>> text_config = LlamaConfig()
>>> configuration = LlavaNextVideoConfig(vision_config, text_config)
>>> model = LlavaNextVideoForConditionalGeneration(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "llava_next_video"
sub_configs = {"text_config": AutoConfig, "vision_config": AutoConfig}
def __init__(
self,
vision_config=None,
text_config=None,
ignore_index=-100,
image_token_index=32001,
projector_hidden_act="gelu",
vision_feature_select_strategy="default",
vision_feature_layer=-2,
image_grid_pinpoints=None,
tie_word_embeddings=False,
video_token_index=32000,
spatial_pool_mode="average",
spatial_pool_stride=2,
image_seq_length=576,
video_seq_length=288,
**kwargs,
):
self.video_token_index = video_token_index
self.spatial_pool_mode = spatial_pool_mode
self.spatial_pool_stride = spatial_pool_stride
self.image_seq_length = image_seq_length
self.video_seq_length = video_seq_length
self.ignore_index = ignore_index
self.image_token_index = image_token_index
self.projector_hidden_act = projector_hidden_act
if vision_feature_select_strategy not in ["default", "full"]:
raise ValueError(
"vision_feature_select_strategy should be one of 'default', 'full'."
f"Got: {vision_feature_select_strategy}"
)
self.vision_feature_select_strategy = vision_feature_select_strategy
self.vision_feature_layer = vision_feature_layer
image_grid_pinpoints = (
image_grid_pinpoints
if image_grid_pinpoints is not None
else [[336, 672], [672, 336], [672, 672], [1008, 336], [336, 1008]]
)
self.image_grid_pinpoints = image_grid_pinpoints
if isinstance(vision_config, dict):
vision_config["model_type"] = (
vision_config["model_type"] if "model_type" in vision_config else "clip_vision_model"
)
vision_config = CONFIG_MAPPING[vision_config["model_type"]](**vision_config)
elif vision_config is None:
vision_config = CONFIG_MAPPING["clip_vision_model"](
intermediate_size=4096,
hidden_size=1024,
patch_size=14,
image_size=336,
num_hidden_layers=24,
num_attention_heads=16,
vocab_size=32000,
projection_dim=768,
)
self.vision_config = vision_config
if isinstance(text_config, dict):
text_config["model_type"] = text_config["model_type"] if "model_type" in text_config else "llama"
text_config = CONFIG_MAPPING[text_config["model_type"]](**text_config)
elif text_config is None:
text_config = CONFIG_MAPPING["llama"]()
self.text_config = text_config
super().__init__(tie_word_embeddings=tie_word_embeddings, **kwargs)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/llava_next_video/processing_llava_next_video.py | # coding=utf-8
# Copyright 2024 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for LLaVa-NeXT-Video.
"""
from typing import TYPE_CHECKING, List, Optional, Union
from ...feature_extraction_utils import BatchFeature
from ...image_processing_utils import select_best_resolution
from ...image_utils import ImageInput, VideoInput, get_image_size, to_numpy_array
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import PaddingStrategy, PreTokenizedInput, TextInput, TruncationStrategy
from ...utils import TensorType, logging
if TYPE_CHECKING:
pass
logger = logging.get_logger(__name__)
class LlavaNextVideoProcessor(ProcessorMixin):
r"""
Constructs a LLaVa-NeXT-Video processor which wraps a LLaVa-NeXT image processor, LLaVa-NeXT-Video video processor and
a LLaMa tokenizer into a single processor.
[`LlavaNextVideoProcessor`] offers all the functionalities of [`LlavaNextImageProcessor`], [`LlavaNextVideoImageProcessor`] and
[`LlamaTokenizerFast`]. See the [`~LlavaNextVideoProcessor.__call__`] and [`~LlavaNextVideoProcessor.decode`] for more information.
Args:
video_processor ([`LlavaNextVideoImageProcessor`], *optional*):
The video processor is a required input.
image_processor ([`LlavaNextImageProcessor`], *optional*):
The image processor is a required input.
tokenizer ([`LlamaTokenizerFast`], *optional*):
The tokenizer is a required input.
chat_template (`str`, *optional*):
Jinja chat template that will be used in tokenizer's `apply_chat_template`
patch_size (`int`, *optional*):
Patch size from the vision tower.
vision_feature_select_strategy (`str`, *optional*):
The feature selection strategy used to select the vision feature from the vision backbone.
Shoudl be same as in model's config
video_token (`str`, *optional*, defaults to `"<video>"`):
Special token used to denote video location.
image_token (`str`, *optional*, defaults to `"<image>"`):
Special token used to denote image location.
num_additional_image_tokens (`int`, *optional*, defaults to 0):
Number of additional tokens added to the image embeddings, such as CLS (+1). If the backbone has no CLS or other
extra tokens appended, no need to set this arg.
"""
# video and image processor share same args, but have different processing logic
# only image processor config is saved in the hub
attributes = ["video_processor", "image_processor", "tokenizer"]
valid_kwargs = [
"chat_template",
"patch_size",
"vision_feature_select_strategy",
"image_token",
"video_token",
"num_additional_image_tokens",
]
image_processor_class = "LlavaNextImageProcessor"
video_processor_class = "LlavaNextVideoImageProcessor"
tokenizer_class = ("LlamaTokenizer", "LlamaTokenizerFast")
def __init__(
self,
video_processor=None,
image_processor=None,
tokenizer=None,
chat_template=None,
patch_size=None,
vision_feature_select_strategy=None,
video_token="<video>",
image_token="<image>",
num_additional_image_tokens=0,
**kwargs,
):
self.patch_size = patch_size
self.num_additional_image_tokens = num_additional_image_tokens
self.vision_feature_select_strategy = vision_feature_select_strategy
self.image_token = tokenizer.image_token if hasattr(tokenizer, "image_token") else image_token
self.video_token = tokenizer.video_token if hasattr(tokenizer, "video_token") else video_token
super().__init__(video_processor, image_processor, tokenizer, chat_template=chat_template)
def __call__(
self,
text: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]],
images: ImageInput = None,
videos: VideoInput = None,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: int = None,
return_tensors: Optional[Union[str, TensorType]] = TensorType.PYTORCH,
) -> BatchFeature:
"""
Main method to prepare for the model one or several sequences(s) and image(s). This method forwards the `text`
and `kwargs` arguments to LlamaTokenizerFast's [`~LlamaTokenizerFast.__call__`] if `text` is not `None` to encode
the text. To prepare the image(s), this method forwards the `images` and `kwrags` arguments to
LlavaNextImageProcessor's [`~LlavaNextImageProcessor.__call__`] if `images` is not `None`. To prepare the video(s),
this method forwards the `videos` and `kwrags` arguments to LlavaNextVideoImageProcessor's
[`~LlavaNextVideoImageProcessor.__call__`] if `videos` is not `None`. Please refer to the doctsring
of the above two methods for more information.
Args:
text (`str`, `List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence can be a string or a list of strings
(pretokenized string). If the sequences are provided as list of strings (pretokenized), you must set
`is_split_into_words=True` (to lift the ambiguity with a batch of sequences).
images (`PIL.Image.Image`, `np.ndarray`, `torch.Tensor`, `List[PIL.Image.Image]`, `List[np.ndarray]`, `List[torch.Tensor]`):
The image or batch of images to be prepared. Each image can be a PIL image, NumPy array or PyTorch
tensor. Both channels-first and channels-last formats are supported.
videos (`np.ndarray`, `torch.Tensor`, `List[np.ndarray]`, `List[torch.Tensor]`):
The image or batch of videos to be prepared. Each video can be a 4D NumPy array or PyTorch
tensor, or a nested list of 3D frames. Both channels-first and channels-last formats are supported.
padding (`bool`, `str` or [`~utils.PaddingStrategy`], *optional*, defaults to `False`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding
index) among:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the maximum
acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of different
lengths).
max_length (`int`, *optional*):
Maximum length of the returned list and optionally padding length (see above).
truncation (`bool`, *optional*):
Activates truncation to cut input sequences longer than `max_length` to `max_length`.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors of a particular framework. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return NumPy `np.ndarray` objects.
- `'jax'`: Return JAX `jnp.ndarray` objects.
Returns:
[`BatchFeature`]: A [`BatchFeature`] with the following fields:
- **input_ids** -- List of token ids to be fed to a model. Returned when `text` is not `None`.
- **attention_mask** -- List of indices specifying which tokens should be attended to by the model (when
`return_attention_mask=True` or if *"attention_mask"* is in `self.model_input_names` and if `text` is not
`None`).
- **pixel_values** -- Pixel values to be fed to a model. Returned when `images` is not `None`.
"""
if images is not None:
image_inputs = self.image_processor(images, return_tensors=return_tensors)
else:
image_inputs = {}
if videos is not None:
videos_inputs = self.video_processor(videos, return_tensors=return_tensors)
else:
videos_inputs = {}
if isinstance(text, str):
text = [text]
elif not isinstance(text, list) and not isinstance(text[0], str):
raise ValueError("Invalid input text. Please provide a string, or a list of strings")
if self.patch_size is None or self.vision_feature_select_strategy is None:
logger.warning_once(
"Expanding inputs for image/video tokens in LLaVa-NeXT-Video should be done in processing. "
"Please add `patch_size`, `num_additional_image_tokens` and `vision_feature_select_strategy` to the model's processing config or set directly "
"with `processor.patch_size = {{patch_size}}`, `processor.num_additional_image_tokens = {{num_additional_image_tokens}}` "
"and processor.vision_feature_select_strategy = {{vision_feature_select_strategy}}`. "
"Using processors without these attributes in the config is deprecated and will throw an error in v4.47."
)
else:
# images expand taking into account num_of_patches in each image
if image_inputs:
image_sizes = iter(image_inputs["image_sizes"])
height, width = get_image_size(to_numpy_array(image_inputs["pixel_values"][0][0]))
prompt_strings = []
for sample in text:
while self.image_token in sample:
image_size = next(image_sizes)
if not isinstance(image_size, (list, tuple)):
# cast to list to avoid numerical precision errors when calculating unpadding
image_size = image_size.tolist()
orig_height, orig_width = image_size
num_image_tokens = self._get_number_of_features(orig_height, orig_width, height, width)
if self.vision_feature_select_strategy == "default":
num_image_tokens -= self.num_additional_image_tokens
sample = sample.replace(self.image_token, "<placeholder>" * num_image_tokens, 1)
prompt_strings.append(sample)
text = [sample.replace("<placeholder>", self.image_token) for sample in prompt_strings]
# videos are easier, simply get frames and multiply
if videos_inputs:
one_video = to_numpy_array(videos_inputs.get("pixel_values_videos")[0])
height, width = get_image_size(one_video[0])
num_frames = one_video.shape[0] # frame dim is always after batch dim
# no `self.num_additional_image_tokens` added because video always has a default feature selection strategy
num_image_tokens = (height // self.patch_size) * (width // self.patch_size)
num_video_tokens = num_image_tokens // 4 * num_frames # divide by 4 needed for avg pooling layer
prompt_strings = []
for sample in text:
sample = sample.replace(self.video_token, self.video_token * num_video_tokens)
prompt_strings.append(sample)
text = prompt_strings
text_inputs = self.tokenizer(
text,
return_tensors=return_tensors,
padding=padding,
truncation=truncation,
max_length=max_length,
)
return BatchFeature(data={**text_inputs, **image_inputs, **videos_inputs})
# Copied from transformers.models.llava_next.processing_llava_next.LlavaNextProcessor._get_number_of_features
def _get_number_of_features(self, orig_height: int, orig_width: int, height: int, width: int) -> int:
image_grid_pinpoints = self.image_processor.image_grid_pinpoints
height_best_resolution, width_best_resolution = select_best_resolution(
[orig_height, orig_width], image_grid_pinpoints
)
scale_height, scale_width = height_best_resolution // height, width_best_resolution // width
patches_height = height // self.patch_size
patches_width = width // self.patch_size
unpadded_features, newline_features = self._get_unpadded_features(
orig_height, orig_width, patches_height, patches_width, scale_height, scale_width
)
# The base patch covers the entire image (+1 for the CLS)
base_features = patches_height * patches_width + self.num_additional_image_tokens
num_image_tokens = unpadded_features + newline_features + base_features
return num_image_tokens
# Copied from transformers.models.llava_next.processing_llava_next.LlavaNextProcessor._get_unpadded_features
def _get_unpadded_features(self, height, width, patches_height, patches_width, scale_height, scale_width):
"""
Get number of features for a given image with height/width. LLaVA-NeXT is different from LLaVA
because it divided each image into patches depending on its resolution. Therefore we need to calculate how many
patches an image is divided into and get the number of features from that.
"""
current_height = patches_height * scale_height
current_width = patches_width * scale_width
original_aspect_ratio = width / height
current_aspect_ratio = current_width / current_height
if original_aspect_ratio > current_aspect_ratio:
new_height = (height * current_width) // width
padding = (current_height - new_height) // 2
current_height -= padding * 2
else:
new_width = (width * current_height) // height
padding = (current_width - new_width) // 2
current_width -= padding * 2
unpadded_features = current_height * current_width
newline_features = current_height
return (unpadded_features, newline_features)
# Copied from transformers.models.clip.processing_clip.CLIPProcessor.batch_decode with CLIP->Llama
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to LlamaTokenizerFast's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
# Copied from transformers.models.clip.processing_clip.CLIPProcessor.decode with CLIP->Llama
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to LlamaTokenizerFast's [`~PreTrainedTokenizer.decode`]. Please refer to
the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
@property
# Copied from transformers.models.clip.processing_clip.CLIPProcessor.model_input_names
def model_input_names(self):
tokenizer_input_names = self.tokenizer.model_input_names
image_processor_input_names = self.image_processor.model_input_names
return list(dict.fromkeys(tokenizer_input_names + image_processor_input_names))
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/llava_next_video/__init__.py | # Copyright 2024 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {
"configuration_llava_next_video": ["LlavaNextVideoConfig"],
"processing_llava_next_video": ["LlavaNextVideoProcessor"],
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_llava_next_video"] = ["LlavaNextVideoImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_llava_next_video"] = [
"LlavaNextVideoForConditionalGeneration",
"LlavaNextVideoPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_llava_next_video import LlavaNextVideoConfig
from .processing_llava_next_video import LlavaNextVideoProcessor
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_llava_next_video import LlavaNextVideoImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_llava_next_video import (
LlavaNextVideoForConditionalGeneration,
LlavaNextVideoPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bert_japanese/tokenization_bert_japanese.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes."""
import collections
import copy
import os
import unicodedata
from typing import Any, Dict, List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import is_sentencepiece_available, is_sudachi_projection_available, logging
if is_sentencepiece_available():
import sentencepiece as spm
else:
spm = None
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt", "spm_file": "spiece.model"}
SPIECE_UNDERLINE = "▁"
# Copied from transformers.models.bert.tokenization_bert.load_vocab
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab
# Copied from transformers.models.bert.tokenization_bert.whitespace_tokenize
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens
class BertJapaneseTokenizer(PreTrainedTokenizer):
r"""
Construct a BERT tokenizer for Japanese text.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer
to: this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to a one-wordpiece-per-line vocabulary file.
spm_file (`str`, *optional*):
Path to [SentencePiece](https://github.com/google/sentencepiece) file (generally has a .spm or .model
extension) that contains the vocabulary.
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether to lower case the input. Only has an effect when do_basic_tokenize=True.
do_word_tokenize (`bool`, *optional*, defaults to `True`):
Whether to do word tokenization.
do_subword_tokenize (`bool`, *optional*, defaults to `True`):
Whether to do subword tokenization.
word_tokenizer_type (`str`, *optional*, defaults to `"basic"`):
Type of word tokenizer. Choose from ["basic", "mecab", "sudachi", "jumanpp"].
subword_tokenizer_type (`str`, *optional*, defaults to `"wordpiece"`):
Type of subword tokenizer. Choose from ["wordpiece", "character", "sentencepiece",].
mecab_kwargs (`dict`, *optional*):
Dictionary passed to the `MecabTokenizer` constructor.
sudachi_kwargs (`dict`, *optional*):
Dictionary passed to the `SudachiTokenizer` constructor.
jumanpp_kwargs (`dict`, *optional*):
Dictionary passed to the `JumanppTokenizer` constructor.
"""
vocab_files_names = VOCAB_FILES_NAMES
def __init__(
self,
vocab_file,
spm_file=None,
do_lower_case=False,
do_word_tokenize=True,
do_subword_tokenize=True,
word_tokenizer_type="basic",
subword_tokenizer_type="wordpiece",
never_split=None,
unk_token="[UNK]",
sep_token="[SEP]",
pad_token="[PAD]",
cls_token="[CLS]",
mask_token="[MASK]",
mecab_kwargs=None,
sudachi_kwargs=None,
jumanpp_kwargs=None,
**kwargs,
):
if subword_tokenizer_type == "sentencepiece":
if not os.path.isfile(spm_file):
raise ValueError(
f"Can't find a vocabulary file at path '{spm_file}'. To load the vocabulary from a Google"
" pretrained model use `tokenizer = AutoTokenizer.from_pretrained(PRETRAINED_MODEL_NAME)`"
)
self.spm_file = spm_file
else:
if not os.path.isfile(vocab_file):
raise ValueError(
f"Can't find a vocabulary file at path '{vocab_file}'. To load the vocabulary from a Google"
" pretrained model use `tokenizer = AutoTokenizer.from_pretrained(PRETRAINED_MODEL_NAME)`"
)
self.vocab = load_vocab(vocab_file)
self.ids_to_tokens = collections.OrderedDict([(ids, tok) for tok, ids in self.vocab.items()])
self.do_word_tokenize = do_word_tokenize
self.word_tokenizer_type = word_tokenizer_type
self.lower_case = do_lower_case
self.never_split = never_split
self.mecab_kwargs = copy.deepcopy(mecab_kwargs)
self.sudachi_kwargs = copy.deepcopy(sudachi_kwargs)
self.jumanpp_kwargs = copy.deepcopy(jumanpp_kwargs)
if do_word_tokenize:
if word_tokenizer_type == "basic":
self.word_tokenizer = BasicTokenizer(
do_lower_case=do_lower_case, never_split=never_split, tokenize_chinese_chars=False
)
elif word_tokenizer_type == "mecab":
self.word_tokenizer = MecabTokenizer(
do_lower_case=do_lower_case, never_split=never_split, **(mecab_kwargs or {})
)
elif word_tokenizer_type == "sudachi":
self.word_tokenizer = SudachiTokenizer(
do_lower_case=do_lower_case, never_split=never_split, **(sudachi_kwargs or {})
)
elif word_tokenizer_type == "jumanpp":
self.word_tokenizer = JumanppTokenizer(
do_lower_case=do_lower_case, never_split=never_split, **(jumanpp_kwargs or {})
)
else:
raise ValueError(f"Invalid word_tokenizer_type '{word_tokenizer_type}' is specified.")
self.do_subword_tokenize = do_subword_tokenize
self.subword_tokenizer_type = subword_tokenizer_type
if do_subword_tokenize:
if subword_tokenizer_type == "wordpiece":
self.subword_tokenizer = WordpieceTokenizer(vocab=self.vocab, unk_token=str(unk_token))
elif subword_tokenizer_type == "character":
self.subword_tokenizer = CharacterTokenizer(vocab=self.vocab, unk_token=str(unk_token))
elif subword_tokenizer_type == "sentencepiece":
self.subword_tokenizer = SentencepieceTokenizer(vocab=self.spm_file, unk_token=str(unk_token))
else:
raise ValueError(f"Invalid subword_tokenizer_type '{subword_tokenizer_type}' is specified.")
super().__init__(
spm_file=spm_file,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
do_lower_case=do_lower_case,
do_word_tokenize=do_word_tokenize,
do_subword_tokenize=do_subword_tokenize,
word_tokenizer_type=word_tokenizer_type,
subword_tokenizer_type=subword_tokenizer_type,
never_split=never_split,
mecab_kwargs=mecab_kwargs,
sudachi_kwargs=sudachi_kwargs,
jumanpp_kwargs=jumanpp_kwargs,
**kwargs,
)
@property
def do_lower_case(self):
return self.lower_case
def __getstate__(self):
state = dict(self.__dict__)
if self.word_tokenizer_type in ["mecab", "sudachi", "jumanpp"]:
del state["word_tokenizer"]
return state
def __setstate__(self, state):
self.__dict__ = state
if self.word_tokenizer_type == "mecab":
self.word_tokenizer = MecabTokenizer(
do_lower_case=self.do_lower_case, never_split=self.never_split, **(self.mecab_kwargs or {})
)
elif self.word_tokenizer_type == "sudachi":
self.word_tokenizer = SudachiTokenizer(
do_lower_case=self.do_lower_case, never_split=self.never_split, **(self.sudachi_kwargs or {})
)
elif self.word_tokenizer_type == "jumanpp":
self.word_tokenizer = JumanppTokenizer(
do_lower_case=self.do_lower_case, never_split=self.never_split, **(self.jumanpp_kwargs or {})
)
def _tokenize(self, text):
if self.do_word_tokenize:
tokens = self.word_tokenizer.tokenize(text, never_split=self.all_special_tokens)
else:
tokens = [text]
if self.do_subword_tokenize:
split_tokens = [sub_token for token in tokens for sub_token in self.subword_tokenizer.tokenize(token)]
else:
split_tokens = tokens
return split_tokens
@property
def vocab_size(self):
if self.subword_tokenizer_type == "sentencepiece":
return len(self.subword_tokenizer.sp_model)
return len(self.vocab)
def get_vocab(self):
if self.subword_tokenizer_type == "sentencepiece":
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
vocab.update(self.added_tokens_encoder)
return vocab
return dict(self.vocab, **self.added_tokens_encoder)
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
if self.subword_tokenizer_type == "sentencepiece":
return self.subword_tokenizer.sp_model.PieceToId(token)
return self.vocab.get(token, self.vocab.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
if self.subword_tokenizer_type == "sentencepiece":
return self.subword_tokenizer.sp_model.IdToPiece(index)
return self.ids_to_tokens.get(index, self.unk_token)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
if self.subword_tokenizer_type == "sentencepiece":
return self.subword_tokenizer.sp_model.decode(tokens)
out_string = " ".join(tokens).replace(" ##", "").strip()
return out_string
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.build_inputs_with_special_tokens
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A BERT sequence has the following format:
- single sequence: `[CLS] X [SEP]`
- pair of sequences: `[CLS] A [SEP] B [SEP]`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + token_ids_1 + sep
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.get_special_tokens_mask
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is not None:
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1]
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.create_token_type_ids_from_sequences
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. A BERT sequence
pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if os.path.isdir(save_directory):
if self.subword_tokenizer_type == "sentencepiece":
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["spm_file"]
)
else:
vocab_file = os.path.join(
save_directory,
(filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"],
)
else:
vocab_file = (filename_prefix + "-" if filename_prefix else "") + save_directory
if self.subword_tokenizer_type == "sentencepiece":
with open(vocab_file, "wb") as writer:
content_spiece_model = self.subword_tokenizer.sp_model.serialized_model_proto()
writer.write(content_spiece_model)
else:
with open(vocab_file, "w", encoding="utf-8") as writer:
index = 0
for token, token_index in sorted(self.vocab.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {vocab_file}: vocabulary indices are not consecutive."
" Please check that the vocabulary is not corrupted!"
)
index = token_index
writer.write(token + "\n")
index += 1
return (vocab_file,)
class MecabTokenizer:
"""Runs basic tokenization with MeCab morphological parser."""
def __init__(
self,
do_lower_case=False,
never_split=None,
normalize_text=True,
mecab_dic: Optional[str] = "unidic_lite",
mecab_option: Optional[str] = None,
):
"""
Constructs a MecabTokenizer.
Args:
**do_lower_case**: (*optional*) boolean (default True)
Whether to lowercase the input.
**never_split**: (*optional*) list of str
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of tokens not to split.
**normalize_text**: (*optional*) boolean (default True)
Whether to apply unicode normalization to text before tokenization.
**mecab_dic**: (*optional*) string (default "ipadic")
Name of dictionary to be used for MeCab initialization. If you are using a system-installed dictionary,
set this option to `None` and modify *mecab_option*.
**mecab_option**: (*optional*) string
String passed to MeCab constructor.
"""
self.do_lower_case = do_lower_case
self.never_split = never_split if never_split is not None else []
self.normalize_text = normalize_text
try:
import fugashi
except ModuleNotFoundError as error:
raise error.__class__(
"You need to install fugashi to use MecabTokenizer. "
"See https://pypi.org/project/fugashi/ for installation."
)
mecab_option = mecab_option or ""
if mecab_dic is not None:
if mecab_dic == "ipadic":
try:
import ipadic
except ModuleNotFoundError as error:
raise error.__class__(
"The ipadic dictionary is not installed. "
"See https://github.com/polm/ipadic-py for installation."
)
dic_dir = ipadic.DICDIR
elif mecab_dic == "unidic_lite":
try:
import unidic_lite
except ModuleNotFoundError as error:
raise error.__class__(
"The unidic_lite dictionary is not installed. "
"See https://github.com/polm/unidic-lite for installation."
)
dic_dir = unidic_lite.DICDIR
elif mecab_dic == "unidic":
try:
import unidic
except ModuleNotFoundError as error:
raise error.__class__(
"The unidic dictionary is not installed. "
"See https://github.com/polm/unidic-py for installation."
)
dic_dir = unidic.DICDIR
if not os.path.isdir(dic_dir):
raise RuntimeError(
"The unidic dictionary itself is not found. "
"See https://github.com/polm/unidic-py for installation."
)
else:
raise ValueError("Invalid mecab_dic is specified.")
mecabrc = os.path.join(dic_dir, "mecabrc")
mecab_option = f'-d "{dic_dir}" -r "{mecabrc}" ' + mecab_option
self.mecab = fugashi.GenericTagger(mecab_option)
def tokenize(self, text, never_split=None, **kwargs):
"""Tokenizes a piece of text."""
if self.normalize_text:
text = unicodedata.normalize("NFKC", text)
never_split = self.never_split + (never_split if never_split is not None else [])
tokens = []
for word in self.mecab(text):
token = word.surface
if self.do_lower_case and token not in never_split:
token = token.lower()
tokens.append(token)
return tokens
class SudachiTokenizer:
"""Runs basic tokenization with Sudachi morphological parser."""
def __init__(
self,
do_lower_case=False,
never_split=None,
normalize_text=True,
trim_whitespace=False,
sudachi_split_mode="A",
sudachi_config_path=None,
sudachi_resource_dir=None,
sudachi_dict_type="core",
sudachi_projection=None,
):
"""
Constructs a SudachiTokenizer.
Args:
**do_lower_case**: (*optional*) boolean (default True)
Whether to lowercase the input.
**never_split**: (*optional*) list of str
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of tokens not to split.
**normalize_text**: (*optional*) boolean (default True)
Whether to apply unicode normalization to text before tokenization.
**trim_whitespace**: (*optional*) boolean (default False)
Whether to trim all whitespace, tab, newline from tokens.
**sudachi_split_mode**: (*optional*) string
Split mode of sudachi, choose from `["A", "B", "C"]`.
**sudachi_config_path**: (*optional*) string
**sudachi_resource_dir**: (*optional*) string
**sudachi_dict_type**: (*optional*) string
dict type of sudachi, choose from `["small", "core", "full"]`.
**sudachi_projection**: (*optional*) string
Word projection mode of sudachi, choose from `["surface", "normalized", "reading", "dictionary", "dictionary_and_surface", "normalized_and_surface", "normalized_nouns"]`.
"""
self.do_lower_case = do_lower_case
self.never_split = never_split if never_split is not None else []
self.normalize_text = normalize_text
self.trim_whitespace = trim_whitespace
try:
from sudachipy import dictionary, tokenizer
except ImportError:
raise ImportError(
"You need to install sudachipy to use SudachiTokenizer. "
"See https://github.com/WorksApplications/SudachiPy for installation."
)
if sudachi_split_mode == "A":
self.split_mode = tokenizer.Tokenizer.SplitMode.A
elif sudachi_split_mode == "B":
self.split_mode = tokenizer.Tokenizer.SplitMode.B
elif sudachi_split_mode == "C":
self.split_mode = tokenizer.Tokenizer.SplitMode.C
else:
raise ValueError("Invalid sudachi_split_mode is specified.")
self.projection = sudachi_projection
sudachi_dictionary = dictionary.Dictionary(
config_path=sudachi_config_path, resource_dir=sudachi_resource_dir, dict=sudachi_dict_type
)
if is_sudachi_projection_available():
self.sudachi = sudachi_dictionary.create(self.split_mode, projection=self.projection)
elif self.projection is not None:
raise ImportError("You need to install sudachipy>=0.6.8 to specify `projection` field in sudachi_kwargs.")
else:
self.sudachi = sudachi_dictionary.create(self.split_mode)
def tokenize(self, text, never_split=None, **kwargs):
"""Tokenizes a piece of text."""
if self.normalize_text:
text = unicodedata.normalize("NFKC", text)
never_split = self.never_split + (never_split if never_split is not None else [])
tokens = []
for word in self.sudachi.tokenize(text):
token = word.surface()
if self.do_lower_case and token not in never_split:
token = token.lower()
if self.trim_whitespace:
if token.strip() == "":
continue
else:
token = token.strip()
tokens.append(token)
return tokens
class JumanppTokenizer:
"""Runs basic tokenization with jumanpp morphological parser."""
def __init__(
self,
do_lower_case=False,
never_split=None,
normalize_text=True,
trim_whitespace=False,
):
"""
Constructs a JumanppTokenizer.
Args:
**do_lower_case**: (*optional*) boolean (default True)
Whether to lowercase the input.
**never_split**: (*optional*) list of str
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of tokens not to split.
**normalize_text**: (*optional*) boolean (default True)
Whether to apply unicode normalization to text before tokenization.
**trim_whitespace**: (*optional*) boolean (default False)
Whether to trim all whitespace, tab, newline from tokens.
"""
self.do_lower_case = do_lower_case
self.never_split = never_split if never_split is not None else []
self.normalize_text = normalize_text
self.trim_whitespace = trim_whitespace
try:
import rhoknp
except ImportError:
raise ImportError(
"You need to install rhoknp to use JumanppTokenizer. "
"See https://github.com/ku-nlp/rhoknp for installation."
)
self.juman = rhoknp.Jumanpp()
def tokenize(self, text, never_split=None, **kwargs):
"""Tokenizes a piece of text."""
if self.normalize_text:
text = unicodedata.normalize("NFKC", text)
text = text.strip()
never_split = self.never_split + (never_split if never_split is not None else [])
tokens = []
for mrph in self.juman.apply_to_sentence(text).morphemes:
token = mrph.text
if self.do_lower_case and token not in never_split:
token = token.lower()
if self.trim_whitespace:
if token.strip() == "":
continue
else:
token = token.strip()
tokens.append(token)
return tokens
class CharacterTokenizer:
"""Runs Character tokenization."""
def __init__(self, vocab, unk_token, normalize_text=True):
"""
Constructs a CharacterTokenizer.
Args:
**vocab**:
Vocabulary object.
**unk_token**: str
A special symbol for out-of-vocabulary token.
**normalize_text**: (`optional`) boolean (default True)
Whether to apply unicode normalization to text before tokenization.
"""
self.vocab = vocab
self.unk_token = unk_token
self.normalize_text = normalize_text
def tokenize(self, text):
"""
Tokenizes a piece of text into characters.
For example, `input = "apple""` wil return as output `["a", "p", "p", "l", "e"]`.
Args:
text: A single token or whitespace separated tokens.
This should have already been passed through *BasicTokenizer*.
Returns:
A list of characters.
"""
if self.normalize_text:
text = unicodedata.normalize("NFKC", text)
output_tokens = []
for char in text:
if char not in self.vocab:
output_tokens.append(self.unk_token)
continue
output_tokens.append(char)
return output_tokens
# Copied from transformers.models.bert.tokenization_bert.BasicTokenizer
class BasicTokenizer:
"""
Constructs a BasicTokenizer that will run basic tokenization (punctuation splitting, lower casing, etc.).
Args:
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
never_split (`Iterable`, *optional*):
Collection of tokens which will never be split during tokenization. Only has an effect when
`do_basic_tokenize=True`
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters.
This should likely be deactivated for Japanese (see this
[issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
do_split_on_punc (`bool`, *optional*, defaults to `True`):
In some instances we want to skip the basic punctuation splitting so that later tokenization can capture
the full context of the words, such as contractions.
"""
def __init__(
self,
do_lower_case=True,
never_split=None,
tokenize_chinese_chars=True,
strip_accents=None,
do_split_on_punc=True,
):
if never_split is None:
never_split = []
self.do_lower_case = do_lower_case
self.never_split = set(never_split)
self.tokenize_chinese_chars = tokenize_chinese_chars
self.strip_accents = strip_accents
self.do_split_on_punc = do_split_on_punc
def tokenize(self, text, never_split=None):
"""
Basic Tokenization of a piece of text. For sub-word tokenization, see WordPieceTokenizer.
Args:
never_split (`List[str]`, *optional*)
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of token not to split.
"""
# union() returns a new set by concatenating the two sets.
never_split = self.never_split.union(set(never_split)) if never_split else self.never_split
text = self._clean_text(text)
# This was added on November 1st, 2018 for the multilingual and Chinese
# models. This is also applied to the English models now, but it doesn't
# matter since the English models were not trained on any Chinese data
# and generally don't have any Chinese data in them (there are Chinese
# characters in the vocabulary because Wikipedia does have some Chinese
# words in the English Wikipedia.).
if self.tokenize_chinese_chars:
text = self._tokenize_chinese_chars(text)
# prevents treating the same character with different unicode codepoints as different characters
unicode_normalized_text = unicodedata.normalize("NFC", text)
orig_tokens = whitespace_tokenize(unicode_normalized_text)
split_tokens = []
for token in orig_tokens:
if token not in never_split:
if self.do_lower_case:
token = token.lower()
if self.strip_accents is not False:
token = self._run_strip_accents(token)
elif self.strip_accents:
token = self._run_strip_accents(token)
split_tokens.extend(self._run_split_on_punc(token, never_split))
output_tokens = whitespace_tokenize(" ".join(split_tokens))
return output_tokens
def _run_strip_accents(self, text):
"""Strips accents from a piece of text."""
text = unicodedata.normalize("NFD", text)
output = []
for char in text:
cat = unicodedata.category(char)
if cat == "Mn":
continue
output.append(char)
return "".join(output)
def _run_split_on_punc(self, text, never_split=None):
"""Splits punctuation on a piece of text."""
if not self.do_split_on_punc or (never_split is not None and text in never_split):
return [text]
chars = list(text)
i = 0
start_new_word = True
output = []
while i < len(chars):
char = chars[i]
if _is_punctuation(char):
output.append([char])
start_new_word = True
else:
if start_new_word:
output.append([])
start_new_word = False
output[-1].append(char)
i += 1
return ["".join(x) for x in output]
def _tokenize_chinese_chars(self, text):
"""Adds whitespace around any CJK character."""
output = []
for char in text:
cp = ord(char)
if self._is_chinese_char(cp):
output.append(" ")
output.append(char)
output.append(" ")
else:
output.append(char)
return "".join(output)
def _is_chinese_char(self, cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def _clean_text(self, text):
"""Performs invalid character removal and whitespace cleanup on text."""
output = []
for char in text:
cp = ord(char)
if cp == 0 or cp == 0xFFFD or _is_control(char):
continue
if _is_whitespace(char):
output.append(" ")
else:
output.append(char)
return "".join(output)
# Copied from transformers.models.bert.tokenization_bert.WordpieceTokenizer
class WordpieceTokenizer:
"""Runs WordPiece tokenization."""
def __init__(self, vocab, unk_token, max_input_chars_per_word=100):
self.vocab = vocab
self.unk_token = unk_token
self.max_input_chars_per_word = max_input_chars_per_word
def tokenize(self, text):
"""
Tokenizes a piece of text into its word pieces. This uses a greedy longest-match-first algorithm to perform
tokenization using the given vocabulary.
For example, `input = "unaffable"` wil return as output `["un", "##aff", "##able"]`.
Args:
text: A single token or whitespace separated tokens. This should have
already been passed through *BasicTokenizer*.
Returns:
A list of wordpiece tokens.
"""
output_tokens = []
for token in whitespace_tokenize(text):
chars = list(token)
if len(chars) > self.max_input_chars_per_word:
output_tokens.append(self.unk_token)
continue
is_bad = False
start = 0
sub_tokens = []
while start < len(chars):
end = len(chars)
cur_substr = None
while start < end:
substr = "".join(chars[start:end])
if start > 0:
substr = "##" + substr
if substr in self.vocab:
cur_substr = substr
break
end -= 1
if cur_substr is None:
is_bad = True
break
sub_tokens.append(cur_substr)
start = end
if is_bad:
output_tokens.append(self.unk_token)
else:
output_tokens.extend(sub_tokens)
return output_tokens
class SentencepieceTokenizer:
"""
Runs sentencepiece tokenization. Based on transformers.models.albert.tokenization_albert.AlbertTokenizer.
"""
def __init__(
self,
vocab,
unk_token,
do_lower_case=False,
remove_space=True,
keep_accents=True,
sp_model_kwargs: Optional[Dict[str, Any]] = None,
):
self.vocab = vocab
self.unk_token = unk_token
self.do_lower_case = do_lower_case
self.remove_space = remove_space
self.keep_accents = keep_accents
self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(self.vocab)
def preprocess_text(self, inputs):
if self.remove_space:
outputs = " ".join(inputs.strip().split())
else:
outputs = inputs
outputs = outputs.replace("``", '"').replace("''", '"')
if not self.keep_accents:
outputs = unicodedata.normalize("NFKD", outputs)
outputs = "".join([c for c in outputs if not unicodedata.combining(c)])
if self.do_lower_case:
outputs = outputs.lower()
return outputs
def tokenize(self, text):
"""
Tokenizes text by sentencepiece. Based on [SentencePiece](https://github.com/google/sentencepiece).
Tokenization needs the given vocabulary.
Args:
text: A string needs to be tokenized.
Returns:
A list of sentencepiece tokens.
"""
text = self.preprocess_text(text)
pieces = self.sp_model.encode(text, out_type=str)
new_pieces = []
for piece in pieces:
if len(piece) > 1 and piece[-1] == str(",") and piece[-2].isdigit():
cur_pieces = self.sp_model.EncodeAsPieces(piece[:-1].replace(SPIECE_UNDERLINE, ""))
if piece[0] != SPIECE_UNDERLINE and cur_pieces[0][0] == SPIECE_UNDERLINE:
if len(cur_pieces[0]) == 1:
cur_pieces = cur_pieces[1:]
else:
cur_pieces[0] = cur_pieces[0][1:]
cur_pieces.append(piece[-1])
new_pieces.extend(cur_pieces)
else:
new_pieces.append(piece)
return new_pieces
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bert_japanese/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import _LazyModule
_import_structure = {"tokenization_bert_japanese": ["BertJapaneseTokenizer", "CharacterTokenizer", "MecabTokenizer"]}
if TYPE_CHECKING:
from .tokenization_bert_japanese import BertJapaneseTokenizer, CharacterTokenizer, MecabTokenizer
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2_with_lm/processing_wav2vec2_with_lm.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Speech processor class for Wav2Vec2
"""
import os
import warnings
from contextlib import contextmanager, nullcontext
from dataclasses import dataclass
from multiprocessing import Pool, get_context, get_start_method
from typing import TYPE_CHECKING, Dict, Iterable, List, Optional, Union
import numpy as np
from ...processing_utils import ProcessorMixin
from ...utils import ModelOutput, logging, requires_backends
logger = logging.get_logger(__name__)
if TYPE_CHECKING:
from pyctcdecode import BeamSearchDecoderCTC
from ...feature_extraction_utils import FeatureExtractionMixin
from ...tokenization_utils import PreTrainedTokenizerBase
ListOfDict = List[Dict[str, Union[int, str]]]
@dataclass
class Wav2Vec2DecoderWithLMOutput(ModelOutput):
"""
Output type of [`Wav2Vec2DecoderWithLM`], with transcription.
Args:
text (list of `str` or `str`):
Decoded logits in text from. Usually the speech transcription.
logit_score (list of `float` or `float`):
Total logit score of the beams associated with produced text.
lm_score (list of `float`):
Fused lm_score of the beams associated with produced text.
word_offsets (list of `List[Dict[str, Union[int, str]]]` or `List[Dict[str, Union[int, str]]]`):
Offsets of the decoded words. In combination with sampling rate and model downsampling rate word offsets
can be used to compute time stamps for each word.
"""
text: Union[List[List[str]], List[str], str]
logit_score: Union[List[List[float]], List[float], float] = None
lm_score: Union[List[List[float]], List[float], float] = None
word_offsets: Union[List[List[ListOfDict]], List[ListOfDict], ListOfDict] = None
class Wav2Vec2ProcessorWithLM(ProcessorMixin):
r"""
Constructs a Wav2Vec2 processor which wraps a Wav2Vec2 feature extractor, a Wav2Vec2 CTC tokenizer and a decoder
with language model support into a single processor for language model boosted speech recognition decoding.
Args:
feature_extractor ([`Wav2Vec2FeatureExtractor`] or [`SeamlessM4TFeatureExtractor`]):
An instance of [`Wav2Vec2FeatureExtractor`] or [`SeamlessM4TFeatureExtractor`]. The feature extractor is a required input.
tokenizer ([`Wav2Vec2CTCTokenizer`]):
An instance of [`Wav2Vec2CTCTokenizer`]. The tokenizer is a required input.
decoder (`pyctcdecode.BeamSearchDecoderCTC`):
An instance of [`pyctcdecode.BeamSearchDecoderCTC`]. The decoder is a required input.
"""
feature_extractor_class = "AutoFeatureExtractor"
tokenizer_class = "Wav2Vec2CTCTokenizer"
def __init__(
self,
feature_extractor: "FeatureExtractionMixin",
tokenizer: "PreTrainedTokenizerBase",
decoder: "BeamSearchDecoderCTC",
):
from pyctcdecode import BeamSearchDecoderCTC
super().__init__(feature_extractor, tokenizer)
if not isinstance(decoder, BeamSearchDecoderCTC):
raise TypeError(f"`decoder` has to be of type {BeamSearchDecoderCTC.__class__}, but is {type(decoder)}")
if feature_extractor.__class__.__name__ not in ["Wav2Vec2FeatureExtractor", "SeamlessM4TFeatureExtractor"]:
raise ValueError(
f"`feature_extractor` has to be of type `Wav2Vec2FeatureExtractor` or `SeamlessM4TFeatureExtractor`, but is {type(feature_extractor)}"
)
# make sure that decoder's alphabet and tokenizer's vocab match in content
missing_decoder_tokens = self.get_missing_alphabet_tokens(decoder, tokenizer)
if len(missing_decoder_tokens) > 0:
raise ValueError(
f"The tokens {missing_decoder_tokens} are defined in the tokenizer's "
"vocabulary, but not in the decoder's alphabet. "
f"Make sure to include {missing_decoder_tokens} in the decoder's alphabet."
)
self.decoder = decoder
self.current_processor = self.feature_extractor
self._in_target_context_manager = False
def save_pretrained(self, save_directory):
super().save_pretrained(save_directory)
self.decoder.save_to_dir(save_directory)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, **kwargs):
r"""
Instantiate a [`Wav2Vec2ProcessorWithLM`] from a pretrained Wav2Vec2 processor.
<Tip>
This class method is simply calling the feature extractor's
[`~feature_extraction_utils.FeatureExtractionMixin.from_pretrained`], Wav2Vec2CTCTokenizer's
[`~tokenization_utils_base.PreTrainedTokenizerBase.from_pretrained`], and
[`pyctcdecode.BeamSearchDecoderCTC.load_from_hf_hub`].
Please refer to the docstrings of the methods above for more information.
</Tip>
Args:
pretrained_model_name_or_path (`str` or `os.PathLike`):
This can be either:
- a string, the *model id* of a pretrained feature_extractor hosted inside a model repo on
huggingface.co.
- a path to a *directory* containing a feature extractor file saved using the
[`~SequenceFeatureExtractor.save_pretrained`] method, e.g., `./my_model_directory/`.
- a path or url to a saved feature extractor JSON *file*, e.g.,
`./my_model_directory/preprocessor_config.json`.
**kwargs
Additional keyword arguments passed along to both [`SequenceFeatureExtractor`] and
[`PreTrainedTokenizer`]
"""
requires_backends(cls, "pyctcdecode")
from pyctcdecode import BeamSearchDecoderCTC
feature_extractor, tokenizer = super()._get_arguments_from_pretrained(pretrained_model_name_or_path, **kwargs)
if os.path.isdir(pretrained_model_name_or_path) or os.path.isfile(pretrained_model_name_or_path):
unigram_encoding = kwargs.get("unigram_encoding", "utf-8")
decoder = BeamSearchDecoderCTC.load_from_dir(pretrained_model_name_or_path, unigram_encoding)
else:
# BeamSearchDecoderCTC has no auto class
kwargs.pop("_from_auto", None)
# snapshot_download has no `trust_remote_code` flag
kwargs.pop("trust_remote_code", None)
# make sure that only relevant filenames are downloaded
language_model_filenames = os.path.join(BeamSearchDecoderCTC._LANGUAGE_MODEL_SERIALIZED_DIRECTORY, "*")
alphabet_filename = BeamSearchDecoderCTC._ALPHABET_SERIALIZED_FILENAME
allow_patterns = [language_model_filenames, alphabet_filename]
decoder = BeamSearchDecoderCTC.load_from_hf_hub(
pretrained_model_name_or_path, allow_patterns=allow_patterns, **kwargs
)
# set language model attributes
for attribute in ["alpha", "beta", "unk_score_offset", "score_boundary"]:
value = kwargs.pop(attribute, None)
if value is not None:
cls._set_language_model_attribute(decoder, attribute, value)
# make sure that decoder's alphabet and tokenizer's vocab match in content
missing_decoder_tokens = cls.get_missing_alphabet_tokens(decoder, tokenizer)
if len(missing_decoder_tokens) > 0:
raise ValueError(
f"The tokens {missing_decoder_tokens} are defined in the tokenizer's "
"vocabulary, but not in the decoder's alphabet. "
f"Make sure to include {missing_decoder_tokens} in the decoder's alphabet."
)
return cls(feature_extractor=feature_extractor, tokenizer=tokenizer, decoder=decoder)
@staticmethod
def _set_language_model_attribute(decoder: "BeamSearchDecoderCTC", attribute: str, value: float):
setattr(decoder.model_container[decoder._model_key], attribute, value)
@property
def language_model(self):
return self.decoder.model_container[self.decoder._model_key]
@staticmethod
def get_missing_alphabet_tokens(decoder, tokenizer):
from pyctcdecode.alphabet import BLANK_TOKEN_PTN, UNK_TOKEN, UNK_TOKEN_PTN
# we need to make sure that all of the tokenizer's except the special tokens
# are present in the decoder's alphabet. Retrieve missing alphabet token
# from decoder
tokenizer_vocab_list = list(tokenizer.get_vocab().keys())
# replace special tokens
for i, token in enumerate(tokenizer_vocab_list):
if BLANK_TOKEN_PTN.match(token):
tokenizer_vocab_list[i] = ""
if token == tokenizer.word_delimiter_token:
tokenizer_vocab_list[i] = " "
if UNK_TOKEN_PTN.match(token):
tokenizer_vocab_list[i] = UNK_TOKEN
# are any of the extra tokens no special tokenizer tokens?
missing_tokens = set(tokenizer_vocab_list) - set(decoder._alphabet.labels)
return missing_tokens
def __call__(self, *args, **kwargs):
"""
When used in normal mode, this method forwards all its arguments to the feature extractor's
[`~FeatureExtractionMixin.__call__`] and returns its output. If used in the context
[`~Wav2Vec2ProcessorWithLM.as_target_processor`] this method forwards all its arguments to
Wav2Vec2CTCTokenizer's [`~Wav2Vec2CTCTokenizer.__call__`]. Please refer to the docstring of the above two
methods for more information.
"""
# For backward compatibility
if self._in_target_context_manager:
return self.current_processor(*args, **kwargs)
if "raw_speech" in kwargs:
warnings.warn("Using `raw_speech` as a keyword argument is deprecated. Use `audio` instead.")
audio = kwargs.pop("raw_speech")
else:
audio = kwargs.pop("audio", None)
sampling_rate = kwargs.pop("sampling_rate", None)
text = kwargs.pop("text", None)
if len(args) > 0:
audio = args[0]
args = args[1:]
if audio is None and text is None:
raise ValueError("You need to specify either an `audio` or `text` input to process.")
if audio is not None:
inputs = self.feature_extractor(audio, *args, sampling_rate=sampling_rate, **kwargs)
if text is not None:
encodings = self.tokenizer(text, **kwargs)
if text is None:
return inputs
elif audio is None:
return encodings
else:
inputs["labels"] = encodings["input_ids"]
return inputs
def pad(self, *args, **kwargs):
"""
When used in normal mode, this method forwards all its arguments to the feature extractor's
[`~FeatureExtractionMixin.pad`] and returns its output. If used in the context
[`~Wav2Vec2ProcessorWithLM.as_target_processor`] this method forwards all its arguments to
Wav2Vec2CTCTokenizer's [`~Wav2Vec2CTCTokenizer.pad`]. Please refer to the docstring of the above two methods
for more information.
"""
# For backward compatibility
if self._in_target_context_manager:
return self.current_processor.pad(*args, **kwargs)
input_features = kwargs.pop("input_features", None)
labels = kwargs.pop("labels", None)
if len(args) > 0:
input_features = args[0]
args = args[1:]
if input_features is not None:
input_features = self.feature_extractor.pad(input_features, *args, **kwargs)
if labels is not None:
labels = self.tokenizer.pad(labels, **kwargs)
if labels is None:
return input_features
elif input_features is None:
return labels
else:
input_features["labels"] = labels["input_ids"]
return input_features
def batch_decode(
self,
logits: np.ndarray,
pool: Optional[Pool] = None,
num_processes: Optional[int] = None,
beam_width: Optional[int] = None,
beam_prune_logp: Optional[float] = None,
token_min_logp: Optional[float] = None,
hotwords: Optional[Iterable[str]] = None,
hotword_weight: Optional[float] = None,
alpha: Optional[float] = None,
beta: Optional[float] = None,
unk_score_offset: Optional[float] = None,
lm_score_boundary: Optional[bool] = None,
output_word_offsets: bool = False,
n_best: int = 1,
):
"""
Batch decode output logits to audio transcription with language model support.
<Tip>
This function makes use of Python's multiprocessing. Currently, multiprocessing is available only on Unix
systems (see this [issue](https://github.com/kensho-technologies/pyctcdecode/issues/65)).
If you are decoding multiple batches, consider creating a `Pool` and passing it to `batch_decode`. Otherwise,
`batch_decode` will be very slow since it will create a fresh `Pool` for each call. See usage example below.
</Tip>
Args:
logits (`np.ndarray`):
The logits output vector of the model representing the log probabilities for each token.
pool (`multiprocessing.Pool`, *optional*):
An optional user-managed pool. If not set, one will be automatically created and closed. The pool
should be instantiated *after* `Wav2Vec2ProcessorWithLM`. Otherwise, the LM won't be available to the
pool's sub-processes.
<Tip>
Currently, only pools created with a 'fork' context can be used. If a 'spawn' pool is passed, it will
be ignored and sequential decoding will be used instead.
</Tip>
num_processes (`int`, *optional*):
If `pool` is not set, number of processes on which the function should be parallelized over. Defaults
to the number of available CPUs.
beam_width (`int`, *optional*):
Maximum number of beams at each step in decoding. Defaults to pyctcdecode's DEFAULT_BEAM_WIDTH.
beam_prune_logp (`int`, *optional*):
Beams that are much worse than best beam will be pruned Defaults to pyctcdecode's DEFAULT_PRUNE_LOGP.
token_min_logp (`int`, *optional*):
Tokens below this logp are skipped unless they are argmax of frame Defaults to pyctcdecode's
DEFAULT_MIN_TOKEN_LOGP.
hotwords (`List[str]`, *optional*):
List of words with extra importance, can be OOV for LM
hotword_weight (`int`, *optional*):
Weight factor for hotword importance Defaults to pyctcdecode's DEFAULT_HOTWORD_WEIGHT.
alpha (`float`, *optional*):
Weight for language model during shallow fusion
beta (`float`, *optional*):
Weight for length score adjustment of during scoring
unk_score_offset (`float`, *optional*):
Amount of log score offset for unknown tokens
lm_score_boundary (`bool`, *optional*):
Whether to have kenlm respect boundaries when scoring
output_word_offsets (`bool`, *optional*, defaults to `False`):
Whether or not to output word offsets. Word offsets can be used in combination with the sampling rate
and model downsampling rate to compute the time-stamps of transcribed words.
n_best (`int`, *optional*, defaults to `1`):
Number of best hypotheses to return. If `n_best` is greater than 1, the returned `text` will be a list
of lists of strings, `logit_score` will be a list of lists of floats, and `lm_score` will be a list of
lists of floats, where the length of the outer list will correspond to the batch size and the length of
the inner list will correspond to the number of returned hypotheses . The value should be >= 1.
<Tip>
Please take a look at the Example of [`~Wav2Vec2ProcessorWithLM.decode`] to better understand how to
make use of `output_word_offsets`. [`~Wav2Vec2ProcessorWithLM.batch_decode`] works the same way with
batched output.
</Tip>
Returns:
[`~models.wav2vec2.Wav2Vec2DecoderWithLMOutput`].
Example:
See [Decoding multiple audios](#decoding-multiple-audios).
"""
from pyctcdecode.constants import (
DEFAULT_BEAM_WIDTH,
DEFAULT_HOTWORD_WEIGHT,
DEFAULT_MIN_TOKEN_LOGP,
DEFAULT_PRUNE_LOGP,
)
# set defaults
beam_width = beam_width if beam_width is not None else DEFAULT_BEAM_WIDTH
beam_prune_logp = beam_prune_logp if beam_prune_logp is not None else DEFAULT_PRUNE_LOGP
token_min_logp = token_min_logp if token_min_logp is not None else DEFAULT_MIN_TOKEN_LOGP
hotword_weight = hotword_weight if hotword_weight is not None else DEFAULT_HOTWORD_WEIGHT
# reset params at every forward call. It's just a `set` method in pyctcdecode
self.decoder.reset_params(
alpha=alpha, beta=beta, unk_score_offset=unk_score_offset, lm_score_boundary=lm_score_boundary
)
# create multiprocessing pool and list numpy arrays
# filter out logits padding
logits_list = [array[(array != -100.0).all(axis=-1)] for array in logits]
# create a pool if necessary while also using it as a context manager to close itself
if pool is None:
# fork is safe to use only on Unix, see "Contexts and start methods" section on
# multiprocessing's docs (https://docs.python.org/3/library/multiprocessing.html#contexts-and-start-methods)
default_context = get_start_method()
if default_context == "fork":
cm = pool = get_context().Pool(num_processes)
else:
logger.warning(
"Parallel batch decoding is not currently supported in this platform. "
"Falling back to sequential decoding."
)
cm = nullcontext()
else:
# pool is managed by the user, so we don't need to close it
cm = nullcontext()
if num_processes is not None:
logger.warning(
"Parameter `num_process` was passed, but it will be ignored since `pool` was also specified."
)
# pyctcdecode
with cm:
decoded_beams = self.decoder.decode_beams_batch(
pool=pool,
logits_list=logits_list,
beam_width=beam_width,
beam_prune_logp=beam_prune_logp,
token_min_logp=token_min_logp,
hotwords=hotwords,
hotword_weight=hotword_weight,
)
# extract text and scores
batch_texts, logit_scores, lm_scores, word_offsets = [], [], [], []
for d in decoded_beams:
batch_texts.append([beam[0] for beam in d])
logit_scores.append([beam[-2] for beam in d])
lm_scores.append([beam[-1] for beam in d])
# word_offsets.append([{"word": t[0], "start_offset": t[1][0], "end_offset": t[1][1]} for t in d[0][1]])
word_offsets.append(
[
[
{"word": word, "start_offset": start_offset, "end_offset": end_offset}
for word, (start_offset, end_offset) in beam[1]
]
for beam in d
]
)
word_offsets = word_offsets if output_word_offsets else None
if n_best == 1:
return Wav2Vec2DecoderWithLMOutput(
text=[hyps[0] for hyps in batch_texts],
logit_score=[hyps[0] for hyps in logit_scores],
lm_score=[hyps[0] for hyps in lm_scores],
word_offsets=[hyps[0] for hyps in word_offsets] if word_offsets is not None else None,
)
else:
return Wav2Vec2DecoderWithLMOutput(
text=[hyps[:n_best] for hyps in batch_texts],
logit_score=[hyps[:n_best] for hyps in logit_scores],
lm_score=[hyps[:n_best] for hyps in lm_scores],
word_offsets=[hyps[:n_best] for hyps in word_offsets] if word_offsets is not None else None,
)
def decode(
self,
logits: np.ndarray,
beam_width: Optional[int] = None,
beam_prune_logp: Optional[float] = None,
token_min_logp: Optional[float] = None,
hotwords: Optional[Iterable[str]] = None,
hotword_weight: Optional[float] = None,
alpha: Optional[float] = None,
beta: Optional[float] = None,
unk_score_offset: Optional[float] = None,
lm_score_boundary: Optional[bool] = None,
output_word_offsets: bool = False,
n_best: int = 1,
):
"""
Decode output logits to audio transcription with language model support.
Args:
logits (`np.ndarray`):
The logits output vector of the model representing the log probabilities for each token.
beam_width (`int`, *optional*):
Maximum number of beams at each step in decoding. Defaults to pyctcdecode's DEFAULT_BEAM_WIDTH.
beam_prune_logp (`int`, *optional*):
A threshold to prune beams with log-probs less than best_beam_logp + beam_prune_logp. The value should
be <= 0. Defaults to pyctcdecode's DEFAULT_PRUNE_LOGP.
token_min_logp (`int`, *optional*):
Tokens with log-probs below token_min_logp are skipped unless they are have the maximum log-prob for an
utterance. Defaults to pyctcdecode's DEFAULT_MIN_TOKEN_LOGP.
hotwords (`List[str]`, *optional*):
List of words with extra importance which can be missing from the LM's vocabulary, e.g. ["huggingface"]
hotword_weight (`int`, *optional*):
Weight multiplier that boosts hotword scores. Defaults to pyctcdecode's DEFAULT_HOTWORD_WEIGHT.
alpha (`float`, *optional*):
Weight for language model during shallow fusion
beta (`float`, *optional*):
Weight for length score adjustment of during scoring
unk_score_offset (`float`, *optional*):
Amount of log score offset for unknown tokens
lm_score_boundary (`bool`, *optional*):
Whether to have kenlm respect boundaries when scoring
output_word_offsets (`bool`, *optional*, defaults to `False`):
Whether or not to output word offsets. Word offsets can be used in combination with the sampling rate
and model downsampling rate to compute the time-stamps of transcribed words.
n_best (`int`, *optional*, defaults to `1`):
Number of best hypotheses to return. If `n_best` is greater than 1, the returned `text` will be a list
of strings, `logit_score` will be a list of floats, and `lm_score` will be a list of floats, where the
length of these lists will correspond to the number of returned hypotheses. The value should be >= 1.
<Tip>
Please take a look at the example below to better understand how to make use of `output_word_offsets`.
</Tip>
Returns:
[`~models.wav2vec2.Wav2Vec2DecoderWithLMOutput`].
Example:
```python
>>> # Let's see how to retrieve time steps for a model
>>> from transformers import AutoTokenizer, AutoProcessor, AutoModelForCTC
>>> from datasets import load_dataset
>>> import datasets
>>> import torch
>>> # import model, feature extractor, tokenizer
>>> model = AutoModelForCTC.from_pretrained("patrickvonplaten/wav2vec2-base-100h-with-lm")
>>> processor = AutoProcessor.from_pretrained("patrickvonplaten/wav2vec2-base-100h-with-lm")
>>> # load first sample of English common_voice
>>> dataset = load_dataset("mozilla-foundation/common_voice_11_0", "en", split="train", streaming=True, trust_remote_code=True)
>>> dataset = dataset.cast_column("audio", datasets.Audio(sampling_rate=16_000))
>>> dataset_iter = iter(dataset)
>>> sample = next(dataset_iter)
>>> # forward sample through model to get greedily predicted transcription ids
>>> input_values = processor(sample["audio"]["array"], return_tensors="pt").input_values
>>> with torch.no_grad():
... logits = model(input_values).logits[0].cpu().numpy()
>>> # retrieve word stamps (analogous commands for `output_char_offsets`)
>>> outputs = processor.decode(logits, output_word_offsets=True)
>>> # compute `time_offset` in seconds as product of downsampling ratio and sampling_rate
>>> time_offset = model.config.inputs_to_logits_ratio / processor.feature_extractor.sampling_rate
>>> word_offsets = [
... {
... "word": d["word"],
... "start_time": round(d["start_offset"] * time_offset, 2),
... "end_time": round(d["end_offset"] * time_offset, 2),
... }
... for d in outputs.word_offsets
... ]
>>> # compare word offsets with audio `en_train_0/common_voice_en_19121553.mp3` online on the dataset viewer:
>>> # https://huggingface.co/datasets/mozilla-foundation/common_voice_11_0/viewer/en
>>> word_offsets[:4]
[{'word': 'THE', 'start_time': 0.68, 'end_time': 0.78}, {'word': 'TRACK', 'start_time': 0.88, 'end_time': 1.1}, {'word': 'APPEARS', 'start_time': 1.18, 'end_time': 1.66}, {'word': 'ON', 'start_time': 1.86, 'end_time': 1.92}]
```"""
from pyctcdecode.constants import (
DEFAULT_BEAM_WIDTH,
DEFAULT_HOTWORD_WEIGHT,
DEFAULT_MIN_TOKEN_LOGP,
DEFAULT_PRUNE_LOGP,
)
# set defaults
beam_width = beam_width if beam_width is not None else DEFAULT_BEAM_WIDTH
beam_prune_logp = beam_prune_logp if beam_prune_logp is not None else DEFAULT_PRUNE_LOGP
token_min_logp = token_min_logp if token_min_logp is not None else DEFAULT_MIN_TOKEN_LOGP
hotword_weight = hotword_weight if hotword_weight is not None else DEFAULT_HOTWORD_WEIGHT
# reset params at every forward call. It's just a `set` method in pyctcdecode
self.decoder.reset_params(
alpha=alpha, beta=beta, unk_score_offset=unk_score_offset, lm_score_boundary=lm_score_boundary
)
# pyctcdecode
decoded_beams = self.decoder.decode_beams(
logits,
beam_width=beam_width,
beam_prune_logp=beam_prune_logp,
token_min_logp=token_min_logp,
hotwords=hotwords,
hotword_weight=hotword_weight,
)
word_offsets = None
if output_word_offsets:
word_offsets = [
[
{"word": word, "start_offset": start_offset, "end_offset": end_offset}
for word, (start_offset, end_offset) in beam[2]
]
for beam in decoded_beams
]
logit_scores = [beam[-2] for beam in decoded_beams]
lm_scores = [beam[-1] for beam in decoded_beams]
hypotheses = [beam[0] for beam in decoded_beams]
if n_best > len(decoded_beams):
logger.info(
"N-best size is larger than the number of generated hypotheses, all hypotheses will be returned."
)
if n_best == 1:
return Wav2Vec2DecoderWithLMOutput(
text=hypotheses[0],
logit_score=logit_scores[0],
lm_score=lm_scores[0],
word_offsets=word_offsets[0] if word_offsets is not None else None,
)
else:
return Wav2Vec2DecoderWithLMOutput(
text=hypotheses[:n_best],
logit_score=logit_scores[:n_best],
lm_score=lm_scores[:n_best],
word_offsets=word_offsets[:n_best] if word_offsets is not None else None,
)
@contextmanager
def as_target_processor(self):
"""
Temporarily sets the processor for processing the target. Useful for encoding the labels when fine-tuning
Wav2Vec2.
"""
warnings.warn(
"`as_target_processor` is deprecated and will be removed in v5 of Transformers. You can process your "
"labels by using the argument `text` of the regular `__call__` method (either in the same call as "
"your audio inputs, or in a separate call."
)
self._in_target_context_manager = True
self.current_processor = self.tokenizer
yield
self.current_processor = self.feature_extractor
self._in_target_context_manager = False
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2_with_lm/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import _LazyModule
_import_structure = {"processing_wav2vec2_with_lm": ["Wav2Vec2ProcessorWithLM"]}
if TYPE_CHECKING:
from .processing_wav2vec2_with_lm import Wav2Vec2ProcessorWithLM
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/modeling_wav2vec2.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch Wav2Vec2 model."""
import math
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...integrations.deepspeed import is_deepspeed_zero3_enabled
from ...integrations.fsdp import is_fsdp_managed_module
from ...modeling_outputs import (
BaseModelOutput,
CausalLMOutput,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
Wav2Vec2BaseModelOutput,
XVectorOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import is_torch_greater_or_equal_than_1_13
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
cached_file,
is_flash_attn_2_available,
is_flash_attn_greater_or_equal_2_10,
is_peft_available,
is_safetensors_available,
logging,
replace_return_docstrings,
)
from .configuration_wav2vec2 import Wav2Vec2Config
WAV2VEC2_ADAPTER_PT_FILE = "adapter.{}.bin"
WAV2VEC2_ADAPTER_SAFE_FILE = "adapter.{}.safetensors"
if is_safetensors_available():
from safetensors.torch import load_file as safe_load_file
if is_flash_attn_2_available():
from ...modeling_flash_attention_utils import _flash_attention_forward
logger = logging.get_logger(__name__)
_HIDDEN_STATES_START_POSITION = 2
# General docstring
_CONFIG_FOR_DOC = "Wav2Vec2Config"
# Base docstring
_CHECKPOINT_FOR_DOC = "facebook/wav2vec2-base-960h"
_EXPECTED_OUTPUT_SHAPE = [1, 292, 768]
# CTC docstring
_CTC_EXPECTED_OUTPUT = "'MISTER QUILTER IS THE APOSTLE OF THE MIDDLE CLASSES AND WE ARE GLAD TO WELCOME HIS GOSPEL'"
_CTC_EXPECTED_LOSS = 53.48
# Audio class docstring
_SEQ_CLASS_CHECKPOINT = "superb/wav2vec2-base-superb-ks"
_SEQ_CLASS_EXPECTED_OUTPUT = "'_unknown_'"
_SEQ_CLASS_EXPECTED_LOSS = 6.54
# Frame class docstring
_FRAME_CLASS_CHECKPOINT = "anton-l/wav2vec2-base-superb-sd"
_FRAME_EXPECTED_OUTPUT = [0, 0]
# Speaker Verification docstring
_XVECTOR_CHECKPOINT = "anton-l/wav2vec2-base-superb-sv"
_XVECTOR_EXPECTED_OUTPUT = 0.98
@dataclass
class Wav2Vec2ForPreTrainingOutput(ModelOutput):
"""
Output type of [`Wav2Vec2ForPreTraining`], with potential hidden states and attentions.
Args:
loss (*optional*, returned when `sample_negative_indices` are passed, `torch.FloatTensor` of shape `(1,)`):
Total loss as the sum of the contrastive loss (L_m) and the diversity loss (L_d) as stated in the [official
paper](https://arxiv.org/pdf/2006.11477.pdf) . (classification) loss.
projected_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.proj_codevector_dim)`):
Hidden-states of the model projected to *config.proj_codevector_dim* that can be used to predict the masked
projected quantized states.
projected_quantized_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.proj_codevector_dim)`):
Quantized extracted feature vectors projected to *config.proj_codevector_dim* representing the positive
target vectors for contrastive loss.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
contrastive_loss (*optional*, returned when `sample_negative_indices` are passed, `torch.FloatTensor` of shape `(1,)`):
The contrastive loss (L_m) as stated in the [official paper](https://arxiv.org/pdf/2006.11477.pdf) .
diversity_loss (*optional*, returned when `sample_negative_indices` are passed, `torch.FloatTensor` of shape `(1,)`):
The diversity loss (L_d) as stated in the [official paper](https://arxiv.org/pdf/2006.11477.pdf) .
"""
loss: Optional[torch.FloatTensor] = None
projected_states: torch.FloatTensor = None
projected_quantized_states: torch.FloatTensor = None
codevector_perplexity: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
contrastive_loss: Optional[torch.FloatTensor] = None
diversity_loss: Optional[torch.FloatTensor] = None
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[torch.LongTensor] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: The shape for which to compute masks. This should be of a tuple of size 2 where
the first element is the batch size and the second element is the length of the axis to span.
mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of
independently generated mask spans of length `mask_length` is computed by
`mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the
actual percentage will be smaller.
mask_length: size of the mask
min_masks: minimum number of masked spans
attention_mask: A (right-padded) attention mask which independently shortens the feature axis of
each batch dimension.
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length}"
f" and `sequence_length`: {sequence_length}`"
)
# epsilon is used for probabilistic rounding
epsilon = np.random.rand(1).item()
def compute_num_masked_span(input_length):
"""Given input length, compute how many spans should be masked"""
num_masked_span = int(mask_prob * input_length / mask_length + epsilon)
num_masked_span = max(num_masked_span, min_masks)
# make sure num masked span <= sequence_length
if num_masked_span * mask_length > sequence_length:
num_masked_span = sequence_length // mask_length
# make sure num_masked span is also <= input_length - (mask_length - 1)
if input_length - (mask_length - 1) < num_masked_span:
num_masked_span = max(input_length - (mask_length - 1), 0)
return num_masked_span
# compute number of masked spans in batch
input_lengths = (
attention_mask.sum(-1).detach().tolist()
if attention_mask is not None
else [sequence_length for _ in range(batch_size)]
)
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
spec_aug_mask_idxs = []
max_num_masked_span = compute_num_masked_span(sequence_length)
if max_num_masked_span == 0:
return spec_aug_mask
for input_length in input_lengths:
# compute num of masked spans for this input
num_masked_span = compute_num_masked_span(input_length)
# get random indices to mask
spec_aug_mask_idx = np.random.choice(
np.arange(input_length - (mask_length - 1)), num_masked_span, replace=False
)
# pick first sampled index that will serve as a dummy index to pad vector
# to ensure same dimension for all batches due to probabilistic rounding
# Picking first sample just pads those vectors twice.
if len(spec_aug_mask_idx) == 0:
# this case can only happen if `input_length` is strictly smaller then
# `sequence_length` in which case the last token has to be a padding
# token which we can use as a dummy mask id
dummy_mask_idx = sequence_length - 1
else:
dummy_mask_idx = spec_aug_mask_idx[0]
spec_aug_mask_idx = np.concatenate(
[spec_aug_mask_idx, np.ones(max_num_masked_span - num_masked_span, dtype=np.int32) * dummy_mask_idx]
)
spec_aug_mask_idxs.append(spec_aug_mask_idx)
spec_aug_mask_idxs = np.array(spec_aug_mask_idxs)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(
spec_aug_mask_idxs[:, :, None], (batch_size, max_num_masked_span, mask_length)
)
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, max_num_masked_span * mask_length)
# add offset to the starting indexes so that indexes now create a span
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, max_num_masked_span, mask_length)).reshape(
batch_size, max_num_masked_span * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# ensure that we cannot have indices larger than sequence_length
if spec_aug_mask_idxs.max() > sequence_length - 1:
spec_aug_mask_idxs[spec_aug_mask_idxs > sequence_length - 1] = sequence_length - 1
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
return spec_aug_mask
def _sample_negative_indices(
features_shape: Tuple, num_negatives: int, mask_time_indices: Optional[np.ndarray] = None
):
"""
Sample `num_negatives` vectors from feature vectors.
"""
batch_size, sequence_length = features_shape
# generate indices of the positive vectors themselves, repeat them `num_negatives` times
sequence_length_range = np.arange(sequence_length)
# get `num_negatives` random vector indices from the same utterance
sampled_negative_indices = np.zeros(shape=(batch_size, sequence_length, num_negatives), dtype=np.int32)
mask_time_indices = (
mask_time_indices.astype(bool) if mask_time_indices is not None else np.ones(features_shape, dtype=bool)
)
for batch_idx in range(batch_size):
high = mask_time_indices[batch_idx].sum() - 1
mapped_masked_indices = sequence_length_range[mask_time_indices[batch_idx]]
feature_indices = np.broadcast_to(np.arange(high + 1)[:, None], (high + 1, num_negatives))
sampled_indices = np.random.randint(0, high, size=(high + 1, num_negatives))
# avoid sampling the same positive vector, but keep the distribution uniform
sampled_indices[sampled_indices >= feature_indices] += 1
# remap to actual indices
sampled_negative_indices[batch_idx][mask_time_indices[batch_idx]] = mapped_masked_indices[sampled_indices]
# correct for batch size
sampled_negative_indices[batch_idx] += batch_idx * sequence_length
return sampled_negative_indices
class Wav2Vec2NoLayerNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
class Wav2Vec2LayerNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.layer_norm = nn.LayerNorm(self.out_conv_dim, elementwise_affine=True)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = hidden_states.transpose(-2, -1)
hidden_states = self.layer_norm(hidden_states)
hidden_states = hidden_states.transpose(-2, -1)
hidden_states = self.activation(hidden_states)
return hidden_states
class Wav2Vec2GroupNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.activation = ACT2FN[config.feat_extract_activation]
self.layer_norm = nn.GroupNorm(num_groups=self.out_conv_dim, num_channels=self.out_conv_dim, affine=True)
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
class Wav2Vec2PositionalConvEmbedding(nn.Module):
def __init__(self, config):
super().__init__()
self.conv = nn.Conv1d(
config.hidden_size,
config.hidden_size,
kernel_size=config.num_conv_pos_embeddings,
padding=config.num_conv_pos_embeddings // 2,
groups=config.num_conv_pos_embedding_groups,
)
weight_norm = nn.utils.weight_norm
if hasattr(nn.utils.parametrizations, "weight_norm"):
weight_norm = nn.utils.parametrizations.weight_norm
if is_deepspeed_zero3_enabled():
import deepspeed
with deepspeed.zero.GatheredParameters(self.conv.weight, modifier_rank=0):
self.conv = weight_norm(self.conv, name="weight", dim=2)
if hasattr(self.conv, "parametrizations"):
weight_g = self.conv.parametrizations.weight.original0
weight_v = self.conv.parametrizations.weight.original1
else:
weight_g = self.conv.weight_g
weight_v = self.conv.weight_v
deepspeed.zero.register_external_parameter(self, weight_v)
deepspeed.zero.register_external_parameter(self, weight_g)
else:
self.conv = weight_norm(self.conv, name="weight", dim=2)
self.padding = Wav2Vec2SamePadLayer(config.num_conv_pos_embeddings)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = hidden_states.transpose(1, 2)
hidden_states = self.conv(hidden_states)
hidden_states = self.padding(hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = hidden_states.transpose(1, 2)
return hidden_states
class Wav2Vec2SamePadLayer(nn.Module):
def __init__(self, num_conv_pos_embeddings):
super().__init__()
self.num_pad_remove = 1 if num_conv_pos_embeddings % 2 == 0 else 0
def forward(self, hidden_states):
if self.num_pad_remove > 0:
hidden_states = hidden_states[:, :, : -self.num_pad_remove]
return hidden_states
class Wav2Vec2FeatureEncoder(nn.Module):
"""Construct the features from raw audio waveform"""
def __init__(self, config):
super().__init__()
if config.feat_extract_norm == "group":
conv_layers = [Wav2Vec2GroupNormConvLayer(config, layer_id=0)] + [
Wav2Vec2NoLayerNormConvLayer(config, layer_id=i + 1) for i in range(config.num_feat_extract_layers - 1)
]
elif config.feat_extract_norm == "layer":
conv_layers = [
Wav2Vec2LayerNormConvLayer(config, layer_id=i) for i in range(config.num_feat_extract_layers)
]
else:
raise ValueError(
f"`config.feat_extract_norm` is {config.feat_extract_norm}, but has to be one of ['group', 'layer']"
)
self.conv_layers = nn.ModuleList(conv_layers)
self.gradient_checkpointing = False
self._requires_grad = True
def _freeze_parameters(self):
for param in self.parameters():
param.requires_grad = False
self._requires_grad = False
def forward(self, input_values):
hidden_states = input_values[:, None]
# make sure hidden_states require grad for gradient_checkpointing
if self._requires_grad and self.training:
hidden_states.requires_grad = True
for conv_layer in self.conv_layers:
if self._requires_grad and self.gradient_checkpointing and self.training:
hidden_states = self._gradient_checkpointing_func(
conv_layer.__call__,
hidden_states,
)
else:
hidden_states = conv_layer(hidden_states)
return hidden_states
class Wav2Vec2FeatureExtractor(Wav2Vec2FeatureEncoder):
def __init__(self, config):
super().__init__(config)
warnings.warn(
f"The class `{self.__class__.__name__}` has been depreciated "
"and will be removed in Transformers v5. "
f"Use `{self.__class__.__bases__[0].__name__}` instead.",
FutureWarning,
)
class Wav2Vec2FeatureProjection(nn.Module):
def __init__(self, config):
super().__init__()
self.layer_norm = nn.LayerNorm(config.conv_dim[-1], eps=config.layer_norm_eps)
self.projection = nn.Linear(config.conv_dim[-1], config.hidden_size)
self.dropout = nn.Dropout(config.feat_proj_dropout)
def forward(self, hidden_states):
# non-projected hidden states are needed for quantization
norm_hidden_states = self.layer_norm(hidden_states)
hidden_states = self.projection(norm_hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states, norm_hidden_states
# Copied from transformers.models.bart.modeling_bart.BartAttention with Bart->Wav2Vec2
class Wav2Vec2Attention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
is_causal: bool = False,
config: Optional[Wav2Vec2Config] = None,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
self.config = config
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.is_causal = is_causal
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, _ = hidden_states.size()
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
# `past_key_value[0].shape[2] == key_value_states.shape[1]`
# is checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
if (
is_cross_attention
and past_key_value is not None
and past_key_value[0].shape[2] == key_value_states.shape[1]
):
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0], key_states], dim=2)
value_states = torch.cat([past_key_value[1], value_states], dim=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, tgt_len, bsz).view(*proj_shape)
key_states = key_states.reshape(*proj_shape)
value_states = value_states.reshape(*proj_shape)
src_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (bsz * self.num_heads, tgt_len, src_len):
raise ValueError(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (bsz, 1, tgt_len, src_len):
raise ValueError(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is {attention_mask.size()}"
)
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len) + attention_mask
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if layer_head_mask is not None:
if layer_head_mask.size() != (self.num_heads,):
raise ValueError(
f"Head mask for a single layer should be of size {(self.num_heads,)}, but is"
f" {layer_head_mask.size()}"
)
attn_weights = layer_head_mask.view(1, -1, 1, 1) * attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to be reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights_reshaped.view(bsz * self.num_heads, tgt_len, src_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (bsz * self.num_heads, tgt_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz * self.num_heads, tgt_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(bsz, self.num_heads, tgt_len, self.head_dim)
attn_output = attn_output.transpose(1, 2)
# Use the `embed_dim` from the config (stored in the class) rather than `hidden_state` because `attn_output` can be
# partitioned across GPUs when using tensor-parallelism.
attn_output = attn_output.reshape(bsz, tgt_len, self.embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped, past_key_value
# Copied from transformers.models.bart.modeling_bart.BartFlashAttention2 with Bart->Wav2Vec2
class Wav2Vec2FlashAttention2(Wav2Vec2Attention):
"""
Wav2Vec2 flash attention module. This module inherits from `Wav2Vec2Attention` as the weights of the module stays
untouched. The only required change would be on the forward pass where it needs to correctly call the public API of
flash attention and deal with padding tokens in case the input contains any of them.
"""
# Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2.__init__
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
# TODO: Should be removed once Flash Attention for RoCm is bumped to 2.1.
# flash_attn<2.1 generates top-left aligned causal mask, while what is needed here is bottom-right alignement, that was made default for flash_attn>=2.1. This attribute is used to handle this difference. Reference: https://github.com/Dao-AILab/flash-attention/releases/tag/v2.1.0.
# Beware that with flash_attn<2.1, using q_seqlen != k_seqlen (except for the case q_seqlen == 1) produces a wrong mask (top-left).
self._flash_attn_uses_top_left_mask = not is_flash_attn_greater_or_equal_2_10()
def _reshape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim)
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
# Wav2Vec2FlashAttention2 attention does not support output_attentions
if output_attentions:
raise ValueError("Wav2Vec2FlashAttention2 attention does not support output_attentions")
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, q_len, _ = hidden_states.size()
# get query proj
query_states = self._reshape(self.q_proj(hidden_states), -1, bsz)
# get key, value proj
# `past_key_value[0].shape[2] == key_value_states.shape[1]`
# is checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
if (
is_cross_attention
and past_key_value is not None
and past_key_value[0].shape[2] == key_value_states.shape[1]
):
# reuse k,v, cross_attentions
key_states = past_key_value[0].transpose(1, 2)
value_states = past_key_value[1].transpose(1, 2)
elif is_cross_attention:
# cross_attentions
key_states = self._reshape(self.k_proj(key_value_states), -1, bsz)
value_states = self._reshape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._reshape(self.k_proj(hidden_states), -1, bsz)
value_states = self._reshape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0].transpose(1, 2), key_states], dim=1)
value_states = torch.cat([past_key_value[1].transpose(1, 2), value_states], dim=1)
else:
# self_attention
key_states = self._reshape(self.k_proj(hidden_states), -1, bsz)
value_states = self._reshape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states.transpose(1, 2), value_states.transpose(1, 2))
kv_seq_len = key_states.shape[-2]
if past_key_value is not None:
kv_seq_len += past_key_value[0].shape[-2]
# In PEFT, usually we cast the layer norms in float32 for training stability reasons
# therefore the input hidden states gets silently casted in float32. Hence, we need
# cast them back in the correct dtype just to be sure everything works as expected.
# This might slowdown training & inference so it is recommended to not cast the LayerNorms
# in fp32. (LlamaRMSNorm handles it correctly)
input_dtype = query_states.dtype
if input_dtype == torch.float32:
if torch.is_autocast_enabled():
target_dtype = torch.get_autocast_gpu_dtype()
# Handle the case where the model is quantized
elif hasattr(self.config, "_pre_quantization_dtype"):
target_dtype = self.config._pre_quantization_dtype
else:
target_dtype = self.q_proj.weight.dtype
logger.warning_once(
f"The input hidden states seems to be silently casted in float32, this might be related to"
f" the fact you have upcasted embedding or layer norm layers in float32. We will cast back the input in"
f" {target_dtype}."
)
query_states = query_states.to(target_dtype)
key_states = key_states.to(target_dtype)
value_states = value_states.to(target_dtype)
attn_output = _flash_attention_forward(
query_states,
key_states,
value_states,
attention_mask,
q_len,
dropout=self.dropout if self.training else 0.0,
is_causal=self.is_causal,
use_top_left_mask=self._flash_attn_uses_top_left_mask,
)
attn_output = attn_output.reshape(bsz, q_len, -1)
attn_output = self.out_proj(attn_output)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
class Wav2Vec2SdpaAttention(Wav2Vec2Attention):
# Copied from transformers.models.bart.modeling_bart.BartSdpaAttention.forward with Bart->Wav2Vec2
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
if output_attentions or layer_head_mask is not None:
# TODO: Improve this warning with e.g. `model.config._attn_implementation = "manual"` once this is implemented.
logger.warning_once(
"Wav2Vec2Model is using Wav2Vec2SdpaAttention, but `torch.nn.functional.scaled_dot_product_attention` does not support `output_attentions=True` or `layer_head_mask` not None. Falling back to the manual attention"
' implementation, but specifying the manual implementation will be required from Transformers version v5.0.0 onwards. This warning can be removed using the argument `attn_implementation="eager"` when loading the model.'
)
return super().forward(
hidden_states,
key_value_states=key_value_states,
past_key_value=past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, _ = hidden_states.size()
# get query proj
query_states = self.q_proj(hidden_states)
# get key, value proj
# `past_key_value[0].shape[2] == key_value_states.shape[1]`
# is checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
if (
is_cross_attention
and past_key_value is not None
and past_key_value[0].shape[2] == key_value_states.shape[1]
):
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0], key_states], dim=2)
value_states = torch.cat([past_key_value[1], value_states], dim=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
query_states = self._shape(query_states, tgt_len, bsz)
# We dispatch to SDPA's Flash Attention or Efficient kernels via this `is_causal` if statement instead of an inline conditional assignment
# in SDPA to support both torch.compile's dynamic shapes and full graph options. An inline conditional prevents dynamic shapes from compiling.
# The tgt_len > 1 is necessary to match with AttentionMaskConverter.to_causal_4d that does not create a causal mask in case tgt_len == 1.
is_causal = True if self.is_causal and attention_mask is None and tgt_len > 1 else False
# NOTE: SDPA with memory-efficient backend is currently (torch==2.1.2) bugged when using non-contiguous inputs and a custom attn_mask,
# but we are fine here as `_shape` do call `.contiguous()`. Reference: https://github.com/pytorch/pytorch/issues/112577
attn_output = torch.nn.functional.scaled_dot_product_attention(
query_states,
key_states,
value_states,
attn_mask=attention_mask,
dropout_p=self.dropout if self.training else 0.0,
is_causal=is_causal,
)
if attn_output.size() != (bsz, self.num_heads, tgt_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.transpose(1, 2)
# Use the `embed_dim` from the config (stored in the class) rather than `hidden_state` because `attn_output` can be
# partitioned across GPUs when using tensor-parallelism.
attn_output = attn_output.reshape(bsz, tgt_len, self.embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, None, past_key_value
WAV2VEC2_ATTENTION_CLASSES = {
"eager": Wav2Vec2Attention,
"sdpa": Wav2Vec2SdpaAttention,
"flash_attention_2": Wav2Vec2FlashAttention2,
}
class Wav2Vec2FeedForward(nn.Module):
def __init__(self, config):
super().__init__()
self.intermediate_dropout = nn.Dropout(config.activation_dropout)
self.intermediate_dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
self.output_dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.output_dropout = nn.Dropout(config.hidden_dropout)
def forward(self, hidden_states):
hidden_states = self.intermediate_dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
hidden_states = self.intermediate_dropout(hidden_states)
hidden_states = self.output_dense(hidden_states)
hidden_states = self.output_dropout(hidden_states)
return hidden_states
class Wav2Vec2EncoderLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = WAV2VEC2_ATTENTION_CLASSES[config._attn_implementation](
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.feed_forward = Wav2Vec2FeedForward(config)
self.final_layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states, attention_mask=None, output_attentions=False):
attn_residual = hidden_states
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = self.dropout(hidden_states)
hidden_states = attn_residual + hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states = hidden_states + self.feed_forward(hidden_states)
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class Wav2Vec2EncoderLayerStableLayerNorm(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = WAV2VEC2_ATTENTION_CLASSES[config._attn_implementation](
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.feed_forward = Wav2Vec2FeedForward(config)
self.final_layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
if getattr(config, "adapter_attn_dim", None) is not None:
self.adapter_layer = Wav2Vec2AttnAdapterLayer(config)
else:
self.adapter_layer = None
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
):
attn_residual = hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = self.dropout(hidden_states)
hidden_states = attn_residual + hidden_states
hidden_states = hidden_states + self.feed_forward(self.final_layer_norm(hidden_states))
if self.adapter_layer is not None:
hidden_states = hidden_states + self.adapter_layer(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class Wav2Vec2Encoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.pos_conv_embed = Wav2Vec2PositionalConvEmbedding(config)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layers = nn.ModuleList([Wav2Vec2EncoderLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
self._use_flash_attention_2 = config._attn_implementation == "flash_attention_2"
def forward(
self,
hidden_states: torch.tensor,
attention_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
# make sure padded tokens output 0
expand_attention_mask = attention_mask.unsqueeze(-1).repeat(1, 1, hidden_states.shape[2])
hidden_states[~expand_attention_mask] = 0
if self._use_flash_attention_2:
# 2d mask is passed through the layers
attention_mask = attention_mask if (attention_mask is not None and 0 in attention_mask) else None
else:
# extend attention_mask
attention_mask = 1.0 - attention_mask[:, None, None, :].to(dtype=hidden_states.dtype)
attention_mask = attention_mask * torch.finfo(hidden_states.dtype).min
attention_mask = attention_mask.expand(
attention_mask.shape[0], 1, attention_mask.shape[-1], attention_mask.shape[-1]
)
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.dropout(hidden_states)
synced_gpus = is_deepspeed_zero3_enabled() or is_fsdp_managed_module(self)
for layer in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = torch.rand([])
skip_the_layer = True if self.training and (dropout_probability < self.config.layerdrop) else False
if not skip_the_layer or synced_gpus:
# under fsdp or deepspeed zero3 all gpus must run in sync
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer.__call__,
hidden_states,
attention_mask,
output_attentions,
)
else:
layer_outputs = layer(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = layer_outputs[0]
if skip_the_layer:
layer_outputs = (None, None)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class Wav2Vec2EncoderStableLayerNorm(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.pos_conv_embed = Wav2Vec2PositionalConvEmbedding(config)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layers = nn.ModuleList(
[Wav2Vec2EncoderLayerStableLayerNorm(config) for _ in range(config.num_hidden_layers)]
)
self.gradient_checkpointing = False
self._use_flash_attention_2 = config._attn_implementation == "flash_attention_2"
def forward(
self,
hidden_states,
attention_mask=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
# make sure padded tokens are not attended to
expand_attention_mask = attention_mask.unsqueeze(-1).repeat(1, 1, hidden_states.shape[2])
hidden_states = hidden_states * expand_attention_mask.to(dtype=hidden_states.dtype)
if self._use_flash_attention_2:
# 2d mask is passed through the layers
attention_mask = attention_mask if (attention_mask is not None and 0 in attention_mask) else None
else:
# extend attention_mask
attention_mask = 1.0 - attention_mask[:, None, None, :].to(dtype=hidden_states.dtype)
attention_mask = attention_mask * torch.finfo(hidden_states.dtype).min
attention_mask = attention_mask.expand(
attention_mask.shape[0], 1, attention_mask.shape[-1], attention_mask.shape[-1]
)
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.dropout(hidden_states)
synced_gpus = is_deepspeed_zero3_enabled() or is_fsdp_managed_module(self)
for layer in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = torch.rand([])
skip_the_layer = True if self.training and (dropout_probability < self.config.layerdrop) else False
if not skip_the_layer or synced_gpus:
# under fsdp or deepspeed zero3 all gpus must run in sync
# XXX: could optimize this like synced_gpus in generate_utils but not sure if it's worth the code complication
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer.__call__,
hidden_states,
attention_mask,
output_attentions,
)
else:
layer_outputs = layer(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = layer_outputs[0]
if skip_the_layer:
layer_outputs = (None, None)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
hidden_states = self.layer_norm(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class Wav2Vec2GumbelVectorQuantizer(nn.Module):
"""
Vector quantization using gumbel softmax. See `[CATEGORICAL REPARAMETERIZATION WITH
GUMBEL-SOFTMAX](https://arxiv.org/pdf/1611.01144.pdf) for more information.
"""
def __init__(self, config):
super().__init__()
self.num_groups = config.num_codevector_groups
self.num_vars = config.num_codevectors_per_group
if config.codevector_dim % self.num_groups != 0:
raise ValueError(
f"`config.codevector_dim {config.codevector_dim} must be divisible "
f"by `config.num_codevector_groups` {self.num_groups} for concatenation"
)
# storage for codebook variables (codewords)
self.codevectors = nn.Parameter(
torch.FloatTensor(1, self.num_groups * self.num_vars, config.codevector_dim // self.num_groups)
)
self.weight_proj = nn.Linear(config.conv_dim[-1], self.num_groups * self.num_vars)
# can be decayed for training
self.temperature = 2
@staticmethod
def _compute_perplexity(probs, mask=None):
if mask is not None:
mask_extended = mask.flatten()[:, None, None].expand(probs.shape)
probs = torch.where(mask_extended, probs, torch.zeros_like(probs))
marginal_probs = probs.sum(dim=0) / mask.sum()
else:
marginal_probs = probs.mean(dim=0)
perplexity = torch.exp(-torch.sum(marginal_probs * torch.log(marginal_probs + 1e-7), dim=-1)).sum()
return perplexity
def forward(self, hidden_states, mask_time_indices=None):
batch_size, sequence_length, hidden_size = hidden_states.shape
# project to codevector dim
hidden_states = self.weight_proj(hidden_states)
hidden_states = hidden_states.view(batch_size * sequence_length * self.num_groups, -1)
if self.training:
# sample code vector probs via gumbel in differentiateable way
codevector_probs = nn.functional.gumbel_softmax(
hidden_states.float(), tau=self.temperature, hard=True
).type_as(hidden_states)
# compute perplexity
codevector_soft_dist = torch.softmax(
hidden_states.view(batch_size * sequence_length, self.num_groups, -1).float(), dim=-1
)
perplexity = self._compute_perplexity(codevector_soft_dist, mask_time_indices)
else:
# take argmax in non-differentiable way
# comptute hard codevector distribution (one hot)
codevector_idx = hidden_states.argmax(dim=-1)
codevector_probs = hidden_states.new_zeros(hidden_states.shape).scatter_(
-1, codevector_idx.view(-1, 1), 1.0
)
codevector_probs = codevector_probs.view(batch_size * sequence_length, self.num_groups, -1)
perplexity = self._compute_perplexity(codevector_probs, mask_time_indices)
codevector_probs = codevector_probs.view(batch_size * sequence_length, -1)
# use probs to retrieve codevectors
codevectors_per_group = codevector_probs.unsqueeze(-1) * self.codevectors
codevectors = codevectors_per_group.view(batch_size * sequence_length, self.num_groups, self.num_vars, -1)
codevectors = codevectors.sum(-2).view(batch_size, sequence_length, -1)
return codevectors, perplexity
class Wav2Vec2Adapter(nn.Module):
def __init__(self, config):
super().__init__()
# feature dim might need to be down-projected
if config.output_hidden_size != config.hidden_size:
self.proj = nn.Linear(config.hidden_size, config.output_hidden_size)
self.proj_layer_norm = nn.LayerNorm(config.output_hidden_size)
else:
self.proj = self.proj_layer_norm = None
self.layers = nn.ModuleList(Wav2Vec2AdapterLayer(config) for _ in range(config.num_adapter_layers))
self.layerdrop = config.layerdrop
def forward(self, hidden_states):
# down project hidden_states if necessary
if self.proj is not None and self.proj_layer_norm is not None:
hidden_states = self.proj(hidden_states)
hidden_states = self.proj_layer_norm(hidden_states)
hidden_states = hidden_states.transpose(1, 2)
for layer in self.layers:
layerdrop_prob = np.random.random()
if not self.training or (layerdrop_prob > self.layerdrop):
hidden_states = layer(hidden_states)
hidden_states = hidden_states.transpose(1, 2)
return hidden_states
class Wav2Vec2AdapterLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.conv = nn.Conv1d(
config.output_hidden_size,
2 * config.output_hidden_size,
config.adapter_kernel_size,
stride=config.adapter_stride,
padding=1,
)
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = nn.functional.glu(hidden_states, dim=1)
return hidden_states
class Wav2Vec2AttnAdapterLayer(nn.Module):
def __init__(self, config):
"""
Implements adapter modules directly with 3D tensor weight as parameters and without using ModuleList to speed
up training throughput.
"""
super().__init__()
self.input_dim = config.adapter_attn_dim
self.hidden_dim = config.hidden_size
self.norm = nn.LayerNorm(self.hidden_dim)
self.linear_1 = nn.Linear(self.hidden_dim, self.input_dim)
self.act_fn = nn.ReLU()
self.linear_2 = nn.Linear(self.input_dim, self.hidden_dim)
def forward(self, hidden_states: torch.FloatTensor):
hidden_states = self.norm(hidden_states)
hidden_states = self.linear_1(hidden_states)
hidden_states = self.act_fn(hidden_states)
hidden_states = self.linear_2(hidden_states)
return hidden_states
class Wav2Vec2PreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = Wav2Vec2Config
base_model_prefix = "wav2vec2"
main_input_name = "input_values"
supports_gradient_checkpointing = True
_supports_flash_attn_2 = True
_supports_sdpa = True
def _init_weights(self, module):
"""Initialize the weights"""
# Wav2Vec2ForPreTraining last 2 linear layers need standard Linear init.
if isinstance(module, Wav2Vec2ForPreTraining):
module.project_hid.reset_parameters()
module.project_q.reset_parameters()
module.project_hid._is_hf_initialized = True
module.project_q._is_hf_initialized = True
# gumbel softmax requires special init
elif isinstance(module, Wav2Vec2GumbelVectorQuantizer):
module.weight_proj.weight.data.normal_(mean=0.0, std=1)
module.weight_proj.bias.data.zero_()
nn.init.uniform_(module.codevectors)
elif isinstance(module, Wav2Vec2PositionalConvEmbedding):
nn.init.normal_(
module.conv.weight,
mean=0,
std=2 * math.sqrt(1 / (module.conv.kernel_size[0] * module.conv.in_channels)),
)
nn.init.constant_(module.conv.bias, 0)
elif isinstance(module, Wav2Vec2FeatureProjection):
k = math.sqrt(1 / module.projection.in_features)
nn.init.uniform_(module.projection.weight, a=-k, b=k)
nn.init.uniform_(module.projection.bias, a=-k, b=k)
elif isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, (nn.LayerNorm, nn.GroupNorm)):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, nn.Conv1d):
nn.init.kaiming_normal_(module.weight)
if module.bias is not None:
k = math.sqrt(module.groups / (module.in_channels * module.kernel_size[0]))
nn.init.uniform_(module.bias, a=-k, b=k)
def _get_feat_extract_output_lengths(
self, input_lengths: Union[torch.LongTensor, int], add_adapter: Optional[bool] = None
):
"""
Computes the output length of the convolutional layers
"""
add_adapter = self.config.add_adapter if add_adapter is None else add_adapter
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return torch.div(input_length - kernel_size, stride, rounding_mode="floor") + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
if add_adapter:
for _ in range(self.config.num_adapter_layers):
input_lengths = _conv_out_length(input_lengths, 1, self.config.adapter_stride)
return input_lengths
def _get_feature_vector_attention_mask(
self, feature_vector_length: int, attention_mask: torch.LongTensor, add_adapter=None
):
# Effectively attention_mask.sum(-1), but not inplace to be able to run
# on inference mode.
non_padded_lengths = attention_mask.cumsum(dim=-1)[:, -1]
output_lengths = self._get_feat_extract_output_lengths(non_padded_lengths, add_adapter=add_adapter)
output_lengths = output_lengths.to(torch.long)
batch_size = attention_mask.shape[0]
attention_mask = torch.zeros(
(batch_size, feature_vector_length), dtype=attention_mask.dtype, device=attention_mask.device
)
# these two operations makes sure that all values before the output lengths idxs are attended to
attention_mask[(torch.arange(attention_mask.shape[0], device=attention_mask.device), output_lengths - 1)] = 1
attention_mask = attention_mask.flip([-1]).cumsum(-1).flip([-1]).bool()
return attention_mask
def _get_adapters(self):
if self.config.adapter_attn_dim is None:
raise ValueError(f"{self.__class__} has no adapter layers. Make sure to define `config.adapter_attn_dim`.")
adapter_weights = {}
for name, module in self.named_modules():
if isinstance(module, Wav2Vec2AttnAdapterLayer):
for param_name, param in module.named_parameters():
adapter_weights[".".join([name, param_name])] = param
if isinstance(self, Wav2Vec2ForCTC):
for name, param in self.lm_head.named_parameters():
adapter_weights[".".join(["lm_head", name])] = param
return adapter_weights
def init_adapter_layers(self):
"""
(Re-)initialize attention adapter layers and lm head for adapter-only fine-tuning
"""
# init attention adapters
for module in self.modules():
if isinstance(module, Wav2Vec2AttnAdapterLayer):
self._init_weights(module)
# init lm head
if isinstance(self, Wav2Vec2ForCTC):
self._init_weights(self.lm_head)
def load_adapter(self, target_lang: str, force_load=True, **kwargs):
r"""
Load a language adapter model from a pre-trained adapter model.
Parameters:
target_lang (`str`):
Has to be a language id of an existing adapter weight. Adapter weights are stored in the format
adapter.<lang>.safetensors or adapter.<lang>.bin
force_load (`bool`, defaults to `True`):
Whether the weights shall be loaded even if `target_lang` matches `self.target_lang`.
cache_dir (`Union[str, os.PathLike]`, *optional*):
Path to a directory in which a downloaded pretrained model configuration should be cached if the
standard cache should not be used.
force_download (`bool`, *optional*, defaults to `False`):
Whether or not to force the (re-)download of the model weights and configuration files, overriding the
cached versions if they exist.
resume_download:
Deprecated and ignored. All downloads are now resumed by default when possible.
Will be removed in v5 of Transformers.
proxies (`Dict[str, str]`, *optional*):
A dictionary of proxy servers to use by protocol or endpoint, e.g., `{'http': 'foo.bar:3128',
'http://hostname': 'foo.bar:4012'}`. The proxies are used on each request.
local_files_only(`bool`, *optional*, defaults to `False`):
Whether or not to only look at local files (i.e., do not try to download the model).
token (`str` or `bool`, *optional*):
The token to use as HTTP bearer authorization for remote files. If `True`, or not specified, will use
the token generated when running `huggingface-cli login` (stored in `~/.huggingface`).
revision (`str`, *optional*, defaults to `"main"`):
The specific model version to use. It can be a branch name, a tag name, or a commit id, since we use a
git-based system for storing models and other artifacts on huggingface.co, so `revision` can be any
identifier allowed by git.
<Tip>
To test a pull request you made on the Hub, you can pass `revision="refs/pr/<pr_number>"`.
</Tip>
mirror (`str`, *optional*):
Mirror source to accelerate downloads in China. If you are from China and have an accessibility
problem, you can set this option to resolve it. Note that we do not guarantee the timeliness or safety.
Please refer to the mirror site for more information.
<Tip>
Activate the special ["offline-mode"](https://huggingface.co/transformers/installation.html#offline-mode) to
use this method in a firewalled environment.
</Tip>
Examples:
```python
>>> from transformers import Wav2Vec2ForCTC, AutoProcessor
>>> ckpt = "facebook/mms-1b-all"
>>> processor = AutoProcessor.from_pretrained(ckpt)
>>> model = Wav2Vec2ForCTC.from_pretrained(ckpt, target_lang="eng")
>>> # set specific language
>>> processor.tokenizer.set_target_lang("spa")
>>> model.load_adapter("spa")
```
"""
if self.config.adapter_attn_dim is None:
raise ValueError(f"Cannot load_adapter for {target_lang} if `config.adapter_attn_dim` is not defined.")
if target_lang == self.target_lang and not force_load:
logger.warning(f"Adapter weights are already set to {target_lang}.")
return
cache_dir = kwargs.pop("cache_dir", None)
force_download = kwargs.pop("force_download", False)
resume_download = kwargs.pop("resume_download", None)
proxies = kwargs.pop("proxies", None)
local_files_only = kwargs.pop("local_files_only", False)
token = kwargs.pop("token", None)
use_auth_token = kwargs.pop("use_auth_token", None)
revision = kwargs.pop("revision", None)
use_safetensors = kwargs.pop("use_safetensors", None if is_safetensors_available() else False)
if use_auth_token is not None:
warnings.warn(
"The `use_auth_token` argument is deprecated and will be removed in v5 of Transformers. Please use `token` instead.",
FutureWarning,
)
if token is not None:
raise ValueError(
"`token` and `use_auth_token` are both specified. Please set only the argument `token`."
)
token = use_auth_token
model_path_or_id = self.config._name_or_path
state_dict = None
# 1. Let's first try loading a safetensors adapter weight
if use_safetensors is not False:
filepath = WAV2VEC2_ADAPTER_SAFE_FILE.format(target_lang)
try:
weight_path = cached_file(
model_path_or_id,
filename=filepath,
force_download=force_download,
resume_download=resume_download,
proxies=proxies,
local_files_only=local_files_only,
token=token,
revision=revision,
cache_dir=cache_dir,
)
state_dict = safe_load_file(weight_path)
except EnvironmentError:
if use_safetensors:
# Raise any environment error raise by `cached_file`. It will have a helpful error message adapted
# to the original exception.
raise
except Exception:
# For any other exception, we throw a generic error.
if use_safetensors:
raise EnvironmentError(
f"Can't load the model for '{model_path_or_id}'. If you were trying to load it"
" from 'https://huggingface.co/models', make sure you don't have a local directory with the"
f" same name. Otherwise, make sure '{model_path_or_id}' is the correct path to a"
f" directory containing a file named {filepath}."
)
# 2. If this didn't work let's try loading a PyTorch adapter weight
if state_dict is None:
filepath = WAV2VEC2_ADAPTER_PT_FILE.format(target_lang)
try:
weight_path = cached_file(
model_path_or_id,
filename=filepath,
force_download=force_download,
resume_download=resume_download,
proxies=proxies,
local_files_only=local_files_only,
token=token,
revision=revision,
cache_dir=cache_dir,
)
weights_only_kwarg = {"weights_only": True} if is_torch_greater_or_equal_than_1_13 else {}
state_dict = torch.load(
weight_path,
map_location="cpu",
**weights_only_kwarg,
)
except EnvironmentError:
# Raise any environment error raise by `cached_file`. It will have a helpful error message adapted
# to the original exception.
raise
except Exception:
# For any other exception, we throw a generic error.
raise EnvironmentError(
f"Can't load the model for '{model_path_or_id}'. If you were trying to load it"
" from 'https://huggingface.co/models', make sure you don't have a local directory with the"
f" same name. Otherwise, make sure '{model_path_or_id}' is the correct path to a"
f" directory containing a file named {filepath}."
)
adapter_weights = self._get_adapters()
unexpected_keys = set(state_dict.keys()) - set(adapter_weights.keys())
missing_keys = set(adapter_weights.keys()) - set(state_dict.keys())
if len(unexpected_keys) > 0:
raise ValueError(f"The adapter weights {weight_path} has unexpected keys: {', '.join(unexpected_keys)}.")
elif len(missing_keys) > 0:
raise ValueError(f"The adapter weights {weight_path} has missing keys: {', '.join(missing_keys)}.")
# make sure now vocab size is correct
target_vocab_size = state_dict["lm_head.weight"].shape[0]
if target_vocab_size != self.config.vocab_size:
self.lm_head = nn.Linear(
self.config.output_hidden_size, target_vocab_size, device=self.device, dtype=self.dtype
)
self.config.vocab_size = target_vocab_size
# make sure that adapter weights are put in exactly the same precision and device placement and overwritten adapter weights
state_dict = {k: v.to(adapter_weights[k]) for k, v in state_dict.items()}
self.load_state_dict(state_dict, strict=False)
# set target language corectly
self.target_lang = target_lang
WAV_2_VEC_2_START_DOCSTRING = r"""
Wav2Vec2 was proposed in [wav2vec 2.0: A Framework for Self-Supervised Learning of Speech
Representations](https://arxiv.org/abs/2006.11477) by Alexei Baevski, Henry Zhou, Abdelrahman Mohamed, Michael
Auli.
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving etc.).
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`Wav2Vec2Config`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
WAV_2_VEC_2_INPUTS_DOCSTRING = r"""
Args:
input_values (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Float values of input raw speech waveform. Values can be obtained by loading a `.flac` or `.wav` audio file
into an array of type `List[float]` or a `numpy.ndarray`, *e.g.* via the soundfile library (`pip install
soundfile`). To prepare the array into `input_values`, the [`AutoProcessor`] should be used for padding and
conversion into a tensor of type `torch.FloatTensor`. See [`Wav2Vec2Processor.__call__`] for details.
attention_mask (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing convolution and attention on padding token indices. Mask values selected in `[0,
1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
<Tip warning={true}>
`attention_mask` should only be passed if the corresponding processor has `config.return_attention_mask ==
True`. For all models whose processor has `config.return_attention_mask == False`, such as
[wav2vec2-base](https://huggingface.co/facebook/wav2vec2-base-960h), `attention_mask` should **not** be
passed to avoid degraded performance when doing batched inference. For such models `input_values` should
simply be padded with 0 and passed without `attention_mask`. Be aware that these models also yield slightly
different results depending on whether `input_values` is padded or not.
</Tip>
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Wav2Vec2 Model transformer outputting raw hidden-states without any specific head on top.",
WAV_2_VEC_2_START_DOCSTRING,
)
class Wav2Vec2Model(Wav2Vec2PreTrainedModel):
def __init__(self, config: Wav2Vec2Config):
super().__init__(config)
self.config = config
self.feature_extractor = Wav2Vec2FeatureEncoder(config)
self.feature_projection = Wav2Vec2FeatureProjection(config)
# model only needs masking vector if mask prob is > 0.0
if config.mask_time_prob > 0.0 or config.mask_feature_prob > 0.0:
self.masked_spec_embed = nn.Parameter(torch.Tensor(config.hidden_size).uniform_())
if config.do_stable_layer_norm:
self.encoder = Wav2Vec2EncoderStableLayerNorm(config)
else:
self.encoder = Wav2Vec2Encoder(config)
self.adapter = Wav2Vec2Adapter(config) if config.add_adapter else None
# Initialize weights and apply final processing
self.post_init()
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.feature_extractor._freeze_parameters()
def _mask_hidden_states(
self,
hidden_states: torch.FloatTensor,
mask_time_indices: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
):
"""
Masks extracted features along time axis and/or along feature axis according to
[SpecAugment](https://arxiv.org/abs/1904.08779).
"""
# `config.apply_spec_augment` can set masking to False
if not getattr(self.config, "apply_spec_augment", True):
return hidden_states
# generate indices & apply SpecAugment along time axis
batch_size, sequence_length, hidden_size = hidden_states.size()
if mask_time_indices is not None:
# apply SpecAugment along time axis with given mask_time_indices
hidden_states[mask_time_indices] = self.masked_spec_embed.to(hidden_states.dtype)
elif self.config.mask_time_prob > 0 and self.training:
mask_time_indices = _compute_mask_indices(
(batch_size, sequence_length),
mask_prob=self.config.mask_time_prob,
mask_length=self.config.mask_time_length,
attention_mask=attention_mask,
min_masks=self.config.mask_time_min_masks,
)
mask_time_indices = torch.tensor(mask_time_indices, device=hidden_states.device, dtype=torch.bool)
hidden_states[mask_time_indices] = self.masked_spec_embed.to(hidden_states.dtype)
if self.config.mask_feature_prob > 0 and self.training:
# generate indices & apply SpecAugment along feature axis
mask_feature_indices = _compute_mask_indices(
(batch_size, hidden_size),
mask_prob=self.config.mask_feature_prob,
mask_length=self.config.mask_feature_length,
min_masks=self.config.mask_feature_min_masks,
)
mask_feature_indices = torch.tensor(mask_feature_indices, device=hidden_states.device, dtype=torch.bool)
mask_feature_indices = mask_feature_indices[:, None].expand(-1, sequence_length, -1)
hidden_states[mask_feature_indices] = 0
return hidden_states
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=Wav2Vec2BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
modality="audio",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
mask_time_indices: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, Wav2Vec2BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
extract_features = self.feature_extractor(input_values)
extract_features = extract_features.transpose(1, 2)
if attention_mask is not None:
# compute reduced attention_mask corresponding to feature vectors
attention_mask = self._get_feature_vector_attention_mask(
extract_features.shape[1], attention_mask, add_adapter=False
)
hidden_states, extract_features = self.feature_projection(extract_features)
hidden_states = self._mask_hidden_states(
hidden_states, mask_time_indices=mask_time_indices, attention_mask=attention_mask
)
encoder_outputs = self.encoder(
hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = encoder_outputs[0]
if self.adapter is not None:
hidden_states = self.adapter(hidden_states)
if not return_dict:
return (hidden_states, extract_features) + encoder_outputs[1:]
return Wav2Vec2BaseModelOutput(
last_hidden_state=hidden_states,
extract_features=extract_features,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
@add_start_docstrings("""Wav2Vec2 Model with a quantizer and `VQ` head on top.""", WAV_2_VEC_2_START_DOCSTRING)
class Wav2Vec2ForPreTraining(Wav2Vec2PreTrainedModel):
def __init__(self, config: Wav2Vec2Config):
super().__init__(config)
self.wav2vec2 = Wav2Vec2Model(config)
self.dropout_features = nn.Dropout(config.feat_quantizer_dropout)
self.quantizer = Wav2Vec2GumbelVectorQuantizer(config)
self.project_hid = nn.Linear(config.hidden_size, config.proj_codevector_dim)
self.project_q = nn.Linear(config.codevector_dim, config.proj_codevector_dim)
# Initialize weights and apply final processing
self.post_init()
def set_gumbel_temperature(self, temperature: int):
"""
Set the Gumbel softmax temperature to a given value. Only necessary for training
"""
self.quantizer.temperature = temperature
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.wav2vec2.feature_extractor._freeze_parameters()
@staticmethod
def compute_contrastive_logits(
target_features: torch.FloatTensor,
negative_features: torch.FloatTensor,
predicted_features: torch.FloatTensor,
temperature: int = 0.1,
):
"""
Compute logits for contrastive loss based using cosine similarity as the distance measure between
`[positive_feature, negative_features]` and `[predicted_features]`. Additionally, temperature can be applied.
"""
target_features = torch.cat([target_features, negative_features], dim=0)
logits = torch.cosine_similarity(predicted_features.float(), target_features.float(), dim=-1).type_as(
target_features
)
# apply temperature
logits = logits / temperature
return logits
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Wav2Vec2ForPreTrainingOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
mask_time_indices: Optional[torch.BoolTensor] = None,
sampled_negative_indices: Optional[torch.BoolTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, Wav2Vec2ForPreTrainingOutput]:
r"""
mask_time_indices (`torch.BoolTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices to mask extracted features for contrastive loss. When in training mode, model learns to predict
masked extracted features in *config.proj_codevector_dim* space.
sampled_negative_indices (`torch.BoolTensor` of shape `(batch_size, sequence_length, num_negatives)`, *optional*):
Indices indicating which quantized target vectors are used as negative sampled vectors in contrastive loss.
Required input for pre-training.
Returns:
Example:
```python
>>> import torch
>>> from transformers import AutoFeatureExtractor, Wav2Vec2ForPreTraining
>>> from transformers.models.wav2vec2.modeling_wav2vec2 import _compute_mask_indices, _sample_negative_indices
>>> from datasets import load_dataset
>>> feature_extractor = AutoFeatureExtractor.from_pretrained("facebook/wav2vec2-base")
>>> model = Wav2Vec2ForPreTraining.from_pretrained("facebook/wav2vec2-base")
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> input_values = feature_extractor(ds[0]["audio"]["array"], return_tensors="pt").input_values # Batch size 1
>>> # compute masked indices
>>> batch_size, raw_sequence_length = input_values.shape
>>> sequence_length = model._get_feat_extract_output_lengths(raw_sequence_length).item()
>>> mask_time_indices = _compute_mask_indices(
... shape=(batch_size, sequence_length), mask_prob=0.2, mask_length=2
... )
>>> sampled_negative_indices = _sample_negative_indices(
... features_shape=(batch_size, sequence_length),
... num_negatives=model.config.num_negatives,
... mask_time_indices=mask_time_indices,
... )
>>> mask_time_indices = torch.tensor(data=mask_time_indices, device=input_values.device, dtype=torch.long)
>>> sampled_negative_indices = torch.tensor(
... data=sampled_negative_indices, device=input_values.device, dtype=torch.long
... )
>>> with torch.no_grad():
... outputs = model(input_values, mask_time_indices=mask_time_indices)
>>> # compute cosine similarity between predicted (=projected_states) and target (=projected_quantized_states)
>>> cosine_sim = torch.cosine_similarity(outputs.projected_states, outputs.projected_quantized_states, dim=-1)
>>> # show that cosine similarity is much higher than random
>>> cosine_sim[mask_time_indices.to(torch.bool)].mean() > 0.5
tensor(True)
>>> # for contrastive loss training model should be put into train mode
>>> model = model.train()
>>> loss = model(
... input_values, mask_time_indices=mask_time_indices, sampled_negative_indices=sampled_negative_indices
... ).loss
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if mask_time_indices is not None:
mask_time_indices = mask_time_indices.to(torch.bool)
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
mask_time_indices=mask_time_indices,
return_dict=return_dict,
)
# 1. project all transformed features (including masked) to final vq dim
transformer_features = self.project_hid(outputs[0])
# 2. quantize all (unmasked) extracted features and project to final vq dim
extract_features = self.dropout_features(outputs[1])
if attention_mask is not None:
# compute reduced attention_mask correponding to feature vectors
attention_mask = self._get_feature_vector_attention_mask(
extract_features.shape[1], attention_mask, add_adapter=False
)
quantized_features, codevector_perplexity = self.quantizer(
extract_features, mask_time_indices=mask_time_indices
)
quantized_features = quantized_features.to(self.project_q.weight.dtype)
quantized_features = self.project_q(quantized_features)
loss = contrastive_loss = diversity_loss = None
if sampled_negative_indices is not None:
batch_size, sequence_length, hidden_size = quantized_features.shape
# for training, we sample negatives
# 3. sample K negatives (distractors) quantized states for contrastive loss
# if attention_mask is passed, make sure that padded feature vectors cannot be sampled
# sample negative quantized vectors BTC => (BxT)C
negative_quantized_features = quantized_features.view(-1, hidden_size)[
sampled_negative_indices.long().view(-1)
]
negative_quantized_features = negative_quantized_features.view(
batch_size, sequence_length, -1, hidden_size
).permute(2, 0, 1, 3)
# 4. compute logits, corresponding to `logs = sim(c_t, [q_t, \sim{q}_t]) / \kappa`
# of equation (3) in https://arxiv.org/pdf/2006.11477.pdf
logits = self.compute_contrastive_logits(
quantized_features[None, :],
negative_quantized_features,
transformer_features,
self.config.contrastive_logits_temperature,
)
# 5. if a negative vector is identical to the positive (i.e. when codebook utilization is low),
# its cosine similarity will be masked
neg_is_pos = (quantized_features == negative_quantized_features).all(-1)
if neg_is_pos.any():
logits[1:][neg_is_pos] = float("-inf")
# 6. compute contrastive loss \mathbf{L}_m = cross_entropy(logs) =
# -log(exp(sim(c_t, q_t)/\kappa) / \sum_{\sim{q}} exp(sim(c_t, \sim{q})/\kappa))
logits = logits.transpose(0, 2).reshape(-1, logits.size(0))
target = ((1 - mask_time_indices.long()) * -100).transpose(0, 1).flatten()
contrastive_loss = nn.functional.cross_entropy(logits.float(), target, reduction="sum")
# 7. compute diversity loss: \mathbf{L}_d
num_codevectors = self.config.num_codevectors_per_group * self.config.num_codevector_groups
diversity_loss = ((num_codevectors - codevector_perplexity) / num_codevectors) * mask_time_indices.sum()
# 8. \mathbf{L} = \mathbf{L}_m + \alpha * \mathbf{L}_d
loss = contrastive_loss + self.config.diversity_loss_weight * diversity_loss
if not return_dict:
if loss is not None:
return (loss, transformer_features, quantized_features, codevector_perplexity) + outputs[2:]
return (transformer_features, quantized_features, codevector_perplexity) + outputs[2:]
return Wav2Vec2ForPreTrainingOutput(
loss=loss,
projected_states=transformer_features,
projected_quantized_states=quantized_features,
codevector_perplexity=codevector_perplexity,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
contrastive_loss=contrastive_loss,
diversity_loss=diversity_loss,
)
@add_start_docstrings("""Wav2Vec2 Model with a `language modeling` head on top.""", WAV_2_VEC_2_START_DOCSTRING)
class Wav2Vec2ForMaskedLM(Wav2Vec2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
warnings.warn(
"The class `Wav2Vec2ForMaskedLM` is deprecated. Please use `Wav2Vec2ForCTC` instead.", FutureWarning
)
self.wav2vec2 = Wav2Vec2Model(config)
self.dropout = nn.Dropout(config.final_dropout)
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
def forward(
self,
input_values: torch.FloatTensor,
attention_mask: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, MaskedLMOutput]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.wav2vec2(
input_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states)
logits = self.lm_head(hidden_states)
if not return_dict:
output = (logits,) + outputs[2:]
return output
return MaskedLMOutput(logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions)
@add_start_docstrings(
"""Wav2Vec2 Model with a `language modeling` head on top for Connectionist Temporal Classification (CTC).""",
WAV_2_VEC_2_START_DOCSTRING,
"""
target_lang (`str`, *optional*):
Language id of adapter weights. Adapter weights are stored in the format adapter.<lang>.safetensors or
adapter.<lang>.bin. Only relevant when using an instance of [`Wav2Vec2ForCTC`] with adapters. Uses 'eng' by
default.
""",
)
class Wav2Vec2ForCTC(Wav2Vec2PreTrainedModel):
def __init__(self, config, target_lang: Optional[str] = None):
super().__init__(config)
self.wav2vec2 = Wav2Vec2Model(config)
self.dropout = nn.Dropout(config.final_dropout)
self.target_lang = target_lang
if config.vocab_size is None:
raise ValueError(
f"You are trying to instantiate {self.__class__} with a configuration that "
"does not define the vocabulary size of the language model head. Please "
"instantiate the model as follows: `Wav2Vec2ForCTC.from_pretrained(..., vocab_size=vocab_size)`. "
"or define `vocab_size` of your model's configuration."
)
output_hidden_size = (
config.output_hidden_size if hasattr(config, "add_adapter") and config.add_adapter else config.hidden_size
)
self.lm_head = nn.Linear(output_hidden_size, config.vocab_size)
# Initialize weights and apply final processing
self.post_init()
def tie_weights(self):
"""
This method overwrites [`~PreTrainedModel.tie_weights`] so that adapter weights can be correctly loaded when
passing `target_lang=...` to `from_pretrained(...)`.
This method is **not** supposed to be called by the user and is prone to be changed in the future.
"""
# Note that `tie_weights` is usually used to tie input and output embedding weights. The method is re-purposed to
# correctly load adapter layers for Wav2Vec2 so that we do not have to introduce a new API to
# [`PreTrainedModel`]. While slightly hacky, Wav2Vec2 never has to tie input and output embeddings, so that it is
# ok to repurpose this function here.
target_lang = self.target_lang
if target_lang is not None and getattr(self.config, "adapter_attn_dim", None) is None:
raise ValueError(f"Cannot pass `target_lang`: {target_lang} if `config.adapter_attn_dim` is not defined.")
elif target_lang is None and getattr(self.config, "adapter_attn_dim", None) is not None:
logger.info("By default `target_lang` is set to 'eng'.")
elif target_lang is not None:
self.load_adapter(target_lang, force_load=True)
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.wav2vec2.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.wav2vec2.parameters():
param.requires_grad = False
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_CTC_EXPECTED_OUTPUT,
expected_loss=_CTC_EXPECTED_LOSS,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, CausalLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, target_length)`, *optional*):
Labels for connectionist temporal classification. Note that `target_length` has to be smaller or equal to
the sequence length of the output logits. Indices are selected in `[-100, 0, ..., config.vocab_size - 1]`.
All labels set to `-100` are ignored (masked), the loss is only computed for labels in `[0, ...,
config.vocab_size - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None and labels.max() >= self.config.vocab_size:
raise ValueError(f"Label values must be <= vocab_size: {self.config.vocab_size}")
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states)
logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# retrieve loss input_lengths from attention_mask
attention_mask = (
attention_mask if attention_mask is not None else torch.ones_like(input_values, dtype=torch.long)
)
input_lengths = self._get_feat_extract_output_lengths(attention_mask.sum(-1)).to(torch.long)
# assuming that padded tokens are filled with -100
# when not being attended to
labels_mask = labels >= 0
target_lengths = labels_mask.sum(-1)
flattened_targets = labels.masked_select(labels_mask)
# ctc_loss doesn't support fp16
log_probs = nn.functional.log_softmax(logits, dim=-1, dtype=torch.float32).transpose(0, 1)
with torch.backends.cudnn.flags(enabled=False):
loss = nn.functional.ctc_loss(
log_probs,
flattened_targets,
input_lengths,
target_lengths,
blank=self.config.pad_token_id,
reduction=self.config.ctc_loss_reduction,
zero_infinity=self.config.ctc_zero_infinity,
)
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutput(
loss=loss, logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions
)
@add_start_docstrings(
"""
Wav2Vec2 Model with a sequence classification head on top (a linear layer over the pooled output) for tasks like
SUPERB Keyword Spotting.
""",
WAV_2_VEC_2_START_DOCSTRING,
)
class Wav2Vec2ForSequenceClassification(Wav2Vec2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
if hasattr(config, "add_adapter") and config.add_adapter:
raise ValueError(
"Sequence classification does not support the use of Wav2Vec2 adapters (config.add_adapter=True)"
)
self.wav2vec2 = Wav2Vec2Model(config)
num_layers = config.num_hidden_layers + 1 # transformer layers + input embeddings
if config.use_weighted_layer_sum:
self.layer_weights = nn.Parameter(torch.ones(num_layers) / num_layers)
self.projector = nn.Linear(config.hidden_size, config.classifier_proj_size)
self.classifier = nn.Linear(config.classifier_proj_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.wav2vec2.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.wav2vec2.parameters():
param.requires_grad = False
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_SEQ_CLASS_CHECKPOINT,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
modality="audio",
expected_output=_SEQ_CLASS_EXPECTED_OUTPUT,
expected_loss=_SEQ_CLASS_EXPECTED_LOSS,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = True if self.config.use_weighted_layer_sum else output_hidden_states
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if self.config.use_weighted_layer_sum:
hidden_states = outputs[_HIDDEN_STATES_START_POSITION]
hidden_states = torch.stack(hidden_states, dim=1)
norm_weights = nn.functional.softmax(self.layer_weights, dim=-1)
hidden_states = (hidden_states * norm_weights.view(-1, 1, 1)).sum(dim=1)
else:
hidden_states = outputs[0]
hidden_states = self.projector(hidden_states)
if attention_mask is None:
pooled_output = hidden_states.mean(dim=1)
else:
padding_mask = self._get_feature_vector_attention_mask(hidden_states.shape[1], attention_mask)
hidden_states[~padding_mask] = 0.0
pooled_output = hidden_states.sum(dim=1) / padding_mask.sum(dim=1).view(-1, 1)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Wav2Vec2 Model with a frame classification head on top for tasks like Speaker Diarization.
""",
WAV_2_VEC_2_START_DOCSTRING,
)
class Wav2Vec2ForAudioFrameClassification(Wav2Vec2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
if hasattr(config, "add_adapter") and config.add_adapter:
raise ValueError(
"Audio frame classification does not support the use of Wav2Vec2 adapters (config.add_adapter=True)"
)
self.wav2vec2 = Wav2Vec2Model(config)
num_layers = config.num_hidden_layers + 1 # transformer layers + input embeddings
if config.use_weighted_layer_sum:
self.layer_weights = nn.Parameter(torch.ones(num_layers) / num_layers)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.num_labels = config.num_labels
self.init_weights()
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.wav2vec2.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.wav2vec2.parameters():
param.requires_grad = False
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_FRAME_CLASS_CHECKPOINT,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
modality="audio",
expected_output=_FRAME_EXPECTED_OUTPUT,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = True if self.config.use_weighted_layer_sum else output_hidden_states
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if self.config.use_weighted_layer_sum:
hidden_states = outputs[_HIDDEN_STATES_START_POSITION]
hidden_states = torch.stack(hidden_states, dim=1)
norm_weights = nn.functional.softmax(self.layer_weights, dim=-1)
hidden_states = (hidden_states * norm_weights.view(-1, 1, 1)).sum(dim=1)
else:
hidden_states = outputs[0]
logits = self.classifier(hidden_states)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), torch.argmax(labels.view(-1, self.num_labels), axis=1))
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class AMSoftmaxLoss(nn.Module):
def __init__(self, input_dim, num_labels, scale=30.0, margin=0.4):
super(AMSoftmaxLoss, self).__init__()
self.scale = scale
self.margin = margin
self.num_labels = num_labels
self.weight = nn.Parameter(torch.randn(input_dim, num_labels), requires_grad=True)
self.loss = nn.CrossEntropyLoss()
def forward(self, hidden_states, labels):
labels = labels.flatten()
weight = nn.functional.normalize(self.weight, dim=0)
hidden_states = nn.functional.normalize(hidden_states, dim=1)
cos_theta = torch.mm(hidden_states, weight)
psi = cos_theta - self.margin
onehot = nn.functional.one_hot(labels, self.num_labels)
logits = self.scale * torch.where(onehot.bool(), psi, cos_theta)
loss = self.loss(logits, labels)
return loss
class TDNNLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.tdnn_dim[layer_id - 1] if layer_id > 0 else config.tdnn_dim[layer_id]
self.out_conv_dim = config.tdnn_dim[layer_id]
self.kernel_size = config.tdnn_kernel[layer_id]
self.dilation = config.tdnn_dilation[layer_id]
self.kernel = nn.Linear(self.in_conv_dim * self.kernel_size, self.out_conv_dim)
self.activation = nn.ReLU()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
if is_peft_available():
from peft.tuners.lora import LoraLayer
if isinstance(self.kernel, LoraLayer):
warnings.warn(
"Detected LoRA on TDNNLayer. LoRA weights won't be applied due to optimization. "
"You should exclude TDNNLayer from LoRA's target modules.",
)
# for backward compatibility, we keep nn.Linear but call F.conv1d for speed up
hidden_states = hidden_states.transpose(1, 2)
weight = self.kernel.weight.view(self.out_conv_dim, self.kernel_size, self.in_conv_dim).transpose(1, 2)
hidden_states = nn.functional.conv1d(hidden_states, weight, self.kernel.bias, dilation=self.dilation)
hidden_states = hidden_states.transpose(1, 2)
hidden_states = self.activation(hidden_states)
return hidden_states
@add_start_docstrings(
"""
Wav2Vec2 Model with an XVector feature extraction head on top for tasks like Speaker Verification.
""",
WAV_2_VEC_2_START_DOCSTRING,
)
class Wav2Vec2ForXVector(Wav2Vec2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.wav2vec2 = Wav2Vec2Model(config)
num_layers = config.num_hidden_layers + 1 # transformer layers + input embeddings
if config.use_weighted_layer_sum:
self.layer_weights = nn.Parameter(torch.ones(num_layers) / num_layers)
self.projector = nn.Linear(config.hidden_size, config.tdnn_dim[0])
tdnn_layers = [TDNNLayer(config, i) for i in range(len(config.tdnn_dim))]
self.tdnn = nn.ModuleList(tdnn_layers)
self.feature_extractor = nn.Linear(config.tdnn_dim[-1] * 2, config.xvector_output_dim)
self.classifier = nn.Linear(config.xvector_output_dim, config.xvector_output_dim)
self.objective = AMSoftmaxLoss(config.xvector_output_dim, config.num_labels)
self.init_weights()
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.wav2vec2.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.wav2vec2.parameters():
param.requires_grad = False
def _get_tdnn_output_lengths(self, input_lengths: Union[torch.LongTensor, int]):
"""
Computes the output length of the TDNN layers
"""
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return (input_length - kernel_size) // stride + 1
for kernel_size in self.config.tdnn_kernel:
input_lengths = _conv_out_length(input_lengths, kernel_size, 1)
return input_lengths
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_XVECTOR_CHECKPOINT,
output_type=XVectorOutput,
config_class=_CONFIG_FOR_DOC,
modality="audio",
expected_output=_XVECTOR_EXPECTED_OUTPUT,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, XVectorOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = True if self.config.use_weighted_layer_sum else output_hidden_states
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if self.config.use_weighted_layer_sum:
hidden_states = outputs[_HIDDEN_STATES_START_POSITION]
hidden_states = torch.stack(hidden_states, dim=1)
norm_weights = nn.functional.softmax(self.layer_weights, dim=-1)
hidden_states = (hidden_states * norm_weights.view(-1, 1, 1)).sum(dim=1)
else:
hidden_states = outputs[0]
hidden_states = self.projector(hidden_states)
for tdnn_layer in self.tdnn:
hidden_states = tdnn_layer(hidden_states)
# Statistic Pooling
if attention_mask is None:
mean_features = hidden_states.mean(dim=1)
std_features = hidden_states.std(dim=1)
else:
feat_extract_output_lengths = self._get_feat_extract_output_lengths(attention_mask.sum(dim=1))
tdnn_output_lengths = self._get_tdnn_output_lengths(feat_extract_output_lengths)
mean_features = []
std_features = []
for i, length in enumerate(tdnn_output_lengths):
mean_features.append(hidden_states[i, :length].mean(dim=0))
std_features.append(hidden_states[i, :length].std(dim=0))
mean_features = torch.stack(mean_features)
std_features = torch.stack(std_features)
statistic_pooling = torch.cat([mean_features, std_features], dim=-1)
output_embeddings = self.feature_extractor(statistic_pooling)
logits = self.classifier(output_embeddings)
loss = None
if labels is not None:
loss = self.objective(logits, labels)
if not return_dict:
output = (logits, output_embeddings) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return XVectorOutput(
loss=loss,
logits=logits,
embeddings=output_embeddings,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/feature_extraction_wav2vec2.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Feature extractor class for Wav2Vec2
"""
from typing import List, Optional, Union
import numpy as np
from ...feature_extraction_sequence_utils import SequenceFeatureExtractor
from ...feature_extraction_utils import BatchFeature
from ...utils import PaddingStrategy, TensorType, logging
logger = logging.get_logger(__name__)
class Wav2Vec2FeatureExtractor(SequenceFeatureExtractor):
r"""
Constructs a Wav2Vec2 feature extractor.
This feature extractor inherits from [`~feature_extraction_sequence_utils.SequenceFeatureExtractor`] which contains
most of the main methods. Users should refer to this superclass for more information regarding those methods.
Args:
feature_size (`int`, *optional*, defaults to 1):
The feature dimension of the extracted features.
sampling_rate (`int`, *optional*, defaults to 16000):
The sampling rate at which the audio files should be digitalized expressed in hertz (Hz).
padding_value (`float`, *optional*, defaults to 0.0):
The value that is used to fill the padding values.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether or not to zero-mean unit-variance normalize the input. Normalizing can help to significantly
improve the performance for some models, *e.g.*,
[wav2vec2-lv60](https://huggingface.co/models?search=lv60).
return_attention_mask (`bool`, *optional*, defaults to `False`):
Whether or not [`~Wav2Vec2FeatureExtractor.__call__`] should return `attention_mask`.
<Tip>
Wav2Vec2 models that have set `config.feat_extract_norm == "group"`, such as
[wav2vec2-base](https://huggingface.co/facebook/wav2vec2-base-960h), have **not** been trained using
`attention_mask`. For such models, `input_values` should simply be padded with 0 and no `attention_mask`
should be passed.
For Wav2Vec2 models that have set `config.feat_extract_norm == "layer"`, such as
[wav2vec2-lv60](https://huggingface.co/facebook/wav2vec2-large-960h-lv60-self), `attention_mask` should be
passed for batched inference.
</Tip>"""
model_input_names = ["input_values", "attention_mask"]
def __init__(
self,
feature_size=1,
sampling_rate=16000,
padding_value=0.0,
return_attention_mask=False,
do_normalize=True,
**kwargs,
):
super().__init__(feature_size=feature_size, sampling_rate=sampling_rate, padding_value=padding_value, **kwargs)
self.return_attention_mask = return_attention_mask
self.do_normalize = do_normalize
@staticmethod
def zero_mean_unit_var_norm(
input_values: List[np.ndarray], attention_mask: List[np.ndarray], padding_value: float = 0.0
) -> List[np.ndarray]:
"""
Every array in the list is normalized to have zero mean and unit variance
"""
if attention_mask is not None:
attention_mask = np.array(attention_mask, np.int32)
normed_input_values = []
for vector, length in zip(input_values, attention_mask.sum(-1)):
normed_slice = (vector - vector[:length].mean()) / np.sqrt(vector[:length].var() + 1e-7)
if length < normed_slice.shape[0]:
normed_slice[length:] = padding_value
normed_input_values.append(normed_slice)
else:
normed_input_values = [(x - x.mean()) / np.sqrt(x.var() + 1e-7) for x in input_values]
return normed_input_values
def __call__(
self,
raw_speech: Union[np.ndarray, List[float], List[np.ndarray], List[List[float]]],
padding: Union[bool, str, PaddingStrategy] = False,
max_length: Optional[int] = None,
truncation: bool = False,
pad_to_multiple_of: Optional[int] = None,
return_attention_mask: Optional[bool] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
sampling_rate: Optional[int] = None,
**kwargs,
) -> BatchFeature:
"""
Main method to featurize and prepare for the model one or several sequence(s).
Args:
raw_speech (`np.ndarray`, `List[float]`, `List[np.ndarray]`, `List[List[float]]`):
The sequence or batch of sequences to be padded. Each sequence can be a numpy array, a list of float
values, a list of numpy arrays or a list of list of float values. Must be mono channel audio, not
stereo, i.e. single float per timestep.
padding (`bool`, `str` or [`~utils.PaddingStrategy`], *optional*, defaults to `False`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding
index) among:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the maximum
acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of different
lengths).
max_length (`int`, *optional*):
Maximum length of the returned list and optionally padding length (see above).
truncation (`bool`):
Activates truncation to cut input sequences longer than *max_length* to *max_length*.
pad_to_multiple_of (`int`, *optional*):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability
`>= 7.5` (Volta), or on TPUs which benefit from having sequence lengths be a multiple of 128.
return_attention_mask (`bool`, *optional*):
Whether to return the attention mask. If left to the default, will return the attention mask according
to the specific feature_extractor's default.
[What are attention masks?](../glossary#attention-mask)
<Tip>
Wav2Vec2 models that have set `config.feat_extract_norm == "group"`, such as
[wav2vec2-base](https://huggingface.co/facebook/wav2vec2-base-960h), have **not** been trained using
`attention_mask`. For such models, `input_values` should simply be padded with 0 and no
`attention_mask` should be passed.
For Wav2Vec2 models that have set `config.feat_extract_norm == "layer"`, such as
[wav2vec2-lv60](https://huggingface.co/facebook/wav2vec2-large-960h-lv60-self), `attention_mask` should
be passed for batched inference.
</Tip>
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
sampling_rate (`int`, *optional*):
The sampling rate at which the `raw_speech` input was sampled. It is strongly recommended to pass
`sampling_rate` at the forward call to prevent silent errors.
padding_value (`float`, *optional*, defaults to 0.0):
"""
if sampling_rate is not None:
if sampling_rate != self.sampling_rate:
raise ValueError(
f"The model corresponding to this feature extractor: {self} was trained using a sampling rate of"
f" {self.sampling_rate}. Please make sure that the provided `raw_speech` input was sampled with"
f" {self.sampling_rate} and not {sampling_rate}."
)
else:
logger.warning(
"It is strongly recommended to pass the ``sampling_rate`` argument to this function. "
"Failing to do so can result in silent errors that might be hard to debug."
)
is_batched_numpy = isinstance(raw_speech, np.ndarray) and len(raw_speech.shape) > 1
if is_batched_numpy and len(raw_speech.shape) > 2:
raise ValueError(f"Only mono-channel audio is supported for input to {self}")
is_batched = is_batched_numpy or (
isinstance(raw_speech, (list, tuple)) and (isinstance(raw_speech[0], (np.ndarray, tuple, list)))
)
# always return batch
if not is_batched:
raw_speech = [raw_speech]
# convert into correct format for padding
encoded_inputs = BatchFeature({"input_values": raw_speech})
padded_inputs = self.pad(
encoded_inputs,
padding=padding,
max_length=max_length,
truncation=truncation,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
)
# convert input values to correct format
input_values = padded_inputs["input_values"]
if not isinstance(input_values[0], np.ndarray):
padded_inputs["input_values"] = [np.asarray(array, dtype=np.float32) for array in input_values]
elif (
not isinstance(input_values, np.ndarray)
and isinstance(input_values[0], np.ndarray)
and input_values[0].dtype is np.dtype(np.float64)
):
padded_inputs["input_values"] = [array.astype(np.float32) for array in input_values]
elif isinstance(input_values, np.ndarray) and input_values.dtype is np.dtype(np.float64):
padded_inputs["input_values"] = input_values.astype(np.float32)
# convert attention_mask to correct format
attention_mask = padded_inputs.get("attention_mask")
if attention_mask is not None:
padded_inputs["attention_mask"] = [np.asarray(array, dtype=np.int32) for array in attention_mask]
# zero-mean and unit-variance normalization
if self.do_normalize:
attention_mask = (
attention_mask
if self._get_padding_strategies(padding, max_length=max_length) is not PaddingStrategy.DO_NOT_PAD
else None
)
padded_inputs["input_values"] = self.zero_mean_unit_var_norm(
padded_inputs["input_values"], attention_mask=attention_mask, padding_value=self.padding_value
)
if return_tensors is not None:
padded_inputs = padded_inputs.convert_to_tensors(return_tensors)
return padded_inputs
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/tokenization_wav2vec2.py | # coding=utf-8
# Copyright 2021 The Facebook Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization class for Wav2Vec2."""
import json
import os
import warnings
from dataclasses import dataclass
from itertools import groupby
from typing import TYPE_CHECKING, Dict, List, Optional, Tuple, Union
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer
from ...tokenization_utils_base import AddedToken, BatchEncoding
from ...utils import (
ModelOutput,
PaddingStrategy,
TensorType,
add_end_docstrings,
is_flax_available,
is_tf_available,
is_torch_available,
logging,
to_py_obj,
)
logger = logging.get_logger(__name__)
if TYPE_CHECKING:
if is_torch_available():
import torch
if is_tf_available():
import tensorflow as tf
if is_flax_available():
import jax.numpy as jnp # noqa: F401
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"tokenizer_config_file": "tokenizer_config.json",
}
# Wav2Vec2 has no max input length
WAV2VEC2_KWARGS_DOCSTRING = r"""
padding (`bool`, `str` or [`~utils.PaddingStrategy`], *optional*, defaults to `False`):
Activates and controls padding. Accepts the following values:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the maximum
acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of different
lengths).
max_length (`int`, *optional*):
Controls the maximum length to use by one of the truncation/padding parameters.
If left unset or set to `None`, this will use the predefined model maximum length if a maximum length
is required by one of the truncation/padding parameters. If the model has no specific maximum input
length (like XLNet) truncation/padding to a maximum length will be deactivated.
pad_to_multiple_of (`int`, *optional*):
If set will pad the sequence to a multiple of the provided value. This is especially useful to enable
the use of Tensor Cores on NVIDIA hardware with compute capability `>= 7.5` (Volta).
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
verbose (`bool`, *optional*, defaults to `True`):
Whether or not to print more information and warnings.
"""
ListOfDict = List[Dict[str, Union[int, str]]]
@dataclass
class Wav2Vec2CTCTokenizerOutput(ModelOutput):
"""
Output type of [` Wav2Vec2CTCTokenizer`], with transcription.
Args:
text (list of `str` or `str`):
Decoded logits in text from. Usually the speech transcription.
char_offsets (list of `List[Dict[str, Union[int, str]]]` or `List[Dict[str, Union[int, str]]]`):
Offsets of the decoded characters. In combination with sampling rate and model downsampling rate char
offsets can be used to compute time stamps for each charater. Total logit score of the beam associated with
produced text.
word_offsets (list of `List[Dict[str, Union[int, str]]]` or `List[Dict[str, Union[int, str]]]`):
Offsets of the decoded words. In combination with sampling rate and model downsampling rate word offsets
can be used to compute time stamps for each word.
"""
text: Union[List[str], str]
char_offsets: Union[List[ListOfDict], ListOfDict] = None
word_offsets: Union[List[ListOfDict], ListOfDict] = None
class Wav2Vec2CTCTokenizer(PreTrainedTokenizer):
"""
Constructs a Wav2Vec2CTC tokenizer.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains some of the main methods. Users should refer to
the superclass for more information regarding such methods.
Args:
vocab_file (`str`):
File containing the vocabulary.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sentence token.
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sentence token.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
word_delimiter_token (`str`, *optional*, defaults to `"|"`):
The token used for defining the end of a word.
do_lower_case (`bool`, *optional*, defaults to `False`):
Whether or not to accept lowercase input and lowercase the output when decoding.
target_lang (`str`, *optional*):
A target language the tokenizer should set by default. `target_lang` has to be defined for multi-lingual,
nested vocabulary such as [facebook/mms-1b-all](https://huggingface.co/facebook/mms-1b-all).
**kwargs
Additional keyword arguments passed along to [`PreTrainedTokenizer`]
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
bos_token="<s>",
eos_token="</s>",
unk_token="<unk>",
pad_token="<pad>",
word_delimiter_token="|",
replace_word_delimiter_char=" ",
do_lower_case=False,
target_lang=None,
**kwargs,
):
self._word_delimiter_token = word_delimiter_token
self.do_lower_case = do_lower_case
self.replace_word_delimiter_char = replace_word_delimiter_char
self.target_lang = target_lang
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.vocab = json.load(vocab_handle)
# if target lang is defined vocab must be a nested dict
# with each target lang being one vocabulary
if target_lang is not None:
self.encoder = self.vocab[target_lang]
else:
self.encoder = self.vocab
self.decoder = {v: k for k, v in self.encoder.items()}
super().__init__(
unk_token=unk_token,
bos_token=bos_token,
eos_token=eos_token,
pad_token=pad_token,
do_lower_case=do_lower_case,
word_delimiter_token=word_delimiter_token,
replace_word_delimiter_char=replace_word_delimiter_char,
target_lang=target_lang,
**kwargs,
)
# make sure that tokens made of several
# characters are not split at tokenization
for token in self.encoder.keys():
if len(token) > 1:
self.add_tokens(AddedToken(token, rstrip=True, lstrip=True, normalized=False))
def set_target_lang(self, target_lang: str):
"""
Set the target language of a nested multi-lingual dictionary
"""
if self.vocab == self.encoder:
raise ValueError(f"{self.vocab} is not a multi-lingual, nested tokenizer. Cannot set target language.")
if target_lang not in self.vocab:
raise ValueError(f"{target_lang} does not exist. Choose one of {', '.join(self.vocab.keys())}.")
self.target_lang = target_lang
self.init_kwargs["target_lang"] = target_lang
self.encoder = self.vocab[target_lang]
self.decoder = {v: k for k, v in self.encoder.items()}
# make sure that tokens made of several
# characters are not split at tokenization
for token in self.encoder.keys():
if len(token) > 1:
self.add_tokens(AddedToken(token, rstrip=True, lstrip=True, normalized=False))
@property
def word_delimiter_token(self) -> str:
"""
`str`: Word delimiter token. Log an error if used while not having been set.
"""
if self._word_delimiter_token is None and self.verbose:
logger.error("Using word_delimiter_token, but it is not set yet.")
return None
return str(self._word_delimiter_token)
@property
def word_delimiter_token_id(self) -> Optional[int]:
"""
`Optional[int]`: Id of the word_delimiter_token in the vocabulary. Returns `None` if the token has not been
set.
"""
if self._word_delimiter_token is None:
return None
return self.convert_tokens_to_ids(self.word_delimiter_token)
@word_delimiter_token.setter
def word_delimiter_token(self, value):
self._word_delimiter_token = value
@word_delimiter_token_id.setter
def word_delimiter_token_id(self, value):
self._word_delimiter_token = self.convert_tokens_to_ids(value)
@property
def vocab_size(self) -> int:
return len(self.decoder)
def get_vocab(self) -> Dict:
vocab = dict(self.encoder)
vocab.update(self.added_tokens_encoder)
return vocab
def _add_tokens(self, new_tokens: Union[List[str], List[AddedToken]], special_tokens: bool = False) -> int:
# Overwritten to never strip!
to_add = []
for token in new_tokens:
if isinstance(token, str):
to_add.append(AddedToken(token, rstrip=False, lstrip=False, normalized=False))
else:
to_add.append(token)
return super()._add_tokens(to_add, special_tokens)
def _tokenize(self, text, **kwargs):
"""
Converts a string into a sequence of tokens (string), using the tokenizer.
"""
if self.do_lower_case:
text = text.upper()
return list(text.replace(" ", self.word_delimiter_token))
def _convert_token_to_id(self, token: str) -> int:
"""Converts a token (str) in an index (integer) using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index: int) -> str:
"""Converts an index (integer) in a token (str) using the vocab."""
result = self.decoder.get(index, self.unk_token)
return result
def convert_tokens_to_string(
self,
tokens: List[str],
group_tokens: bool = True,
spaces_between_special_tokens: bool = False,
output_char_offsets: bool = False,
output_word_offsets: bool = False,
) -> Dict[str, Union[str, float]]:
"""
Converts a connectionist-temporal-classification (CTC) output tokens into a single string.
"""
if len(tokens) == 0:
return {"text": "", "char_offsets": [], "word_offsets": []}
# group same tokens into non-repeating tokens in CTC style decoding
if group_tokens:
chars, char_repetitions = zip(*((token, len(list(group_iter))) for token, group_iter in groupby(tokens)))
else:
chars = tokens
char_repetitions = len(tokens) * [1]
# filter self.pad_token which is used as CTC-blank token
processed_chars = list(filter(lambda char: char != self.pad_token, chars))
# replace delimiter token
processed_chars = [
self.replace_word_delimiter_char if char == self.word_delimiter_token else char for char in processed_chars
]
# retrieve offsets
char_offsets = word_offsets = None
if output_char_offsets or output_word_offsets:
char_offsets = self._compute_offsets(char_repetitions, chars, self.pad_token)
if len(char_offsets) != len(processed_chars):
raise ValueError(
f"`char_offsets`: {char_offsets} and `processed_tokens`: {processed_chars}"
" have to be of the same length, but are: "
f"`len(offsets)`: {len(char_offsets)} and `len(processed_tokens)`:"
f" {len(processed_chars)}"
)
# set tokens to correct processed token
for i, char in enumerate(processed_chars):
char_offsets[i]["char"] = char
# retrieve word offsets from character offsets
word_offsets = None
if output_word_offsets:
word_offsets = self._get_word_offsets(char_offsets, self.replace_word_delimiter_char)
# don't output chars if not set to True
if not output_char_offsets:
char_offsets = None
# join to string
join_char = " " if spaces_between_special_tokens else ""
string = join_char.join(processed_chars).strip()
if self.do_lower_case:
string = string.lower()
return {"text": string, "char_offsets": char_offsets, "word_offsets": word_offsets}
@staticmethod
def _compute_offsets(
char_repetitions: List[int], chars: List[str], ctc_token: int
) -> List[Dict[str, Union[str, int]]]:
end_indices = np.asarray(char_repetitions).cumsum()
start_indices = np.concatenate(([0], end_indices[:-1]))
offsets = [
{"char": t, "start_offset": s, "end_offset": e} for t, s, e in zip(chars, start_indices, end_indices)
]
# filter out CTC token
offsets = list(filter(lambda offsets: offsets["char"] != ctc_token, offsets))
return offsets
@staticmethod
def _get_word_offsets(
offsets: Dict[str, Union[str, float]], word_delimiter_char: str = " "
) -> Dict[str, Union[str, float]]:
word_offsets = []
last_state = "SPACE"
word = ""
start_offset = 0
end_offset = 0
for i, offset in enumerate(offsets):
char = offset["char"]
state = "SPACE" if char == word_delimiter_char else "WORD"
if state == last_state:
# If we are in the same state as before, we simply repeat what we've done before
end_offset = offset["end_offset"]
word += char
else:
# Switching state
if state == "SPACE":
# Finishing a word
word_offsets.append({"word": word, "start_offset": start_offset, "end_offset": end_offset})
else:
# Starting a new word
start_offset = offset["start_offset"]
end_offset = offset["end_offset"]
word = char
last_state = state
if last_state == "WORD":
word_offsets.append({"word": word, "start_offset": start_offset, "end_offset": end_offset})
return word_offsets
def prepare_for_tokenization(self, text, is_split_into_words=False, **kwargs):
if is_split_into_words:
text = " " + text
return (text, kwargs)
def _decode(
self,
token_ids: List[int],
skip_special_tokens: bool = False,
clean_up_tokenization_spaces: bool = None,
group_tokens: bool = True,
spaces_between_special_tokens: bool = False,
output_word_offsets: Optional[bool] = False,
output_char_offsets: Optional[bool] = False,
) -> str:
"""
special _decode function is needed for Wav2Vec2Tokenizer because added tokens should be treated exactly the
same as tokens of the base vocabulary and therefore the function `convert_tokens_to_string` has to be called on
the whole token list and not individually on added tokens
"""
filtered_tokens = self.convert_ids_to_tokens(token_ids, skip_special_tokens=skip_special_tokens)
result = []
for token in filtered_tokens:
if skip_special_tokens and (
token in self.all_special_ids or (token != self.pad_token and token in self.all_special_tokens)
):
continue
result.append(token)
string_output = self.convert_tokens_to_string(
result,
group_tokens=group_tokens,
spaces_between_special_tokens=spaces_between_special_tokens,
output_word_offsets=output_word_offsets,
output_char_offsets=output_char_offsets,
)
text = string_output["text"]
clean_up_tokenization_spaces = (
clean_up_tokenization_spaces
if clean_up_tokenization_spaces is not None
else self.clean_up_tokenization_spaces
)
if clean_up_tokenization_spaces:
text = self.clean_up_tokenization(text)
if output_word_offsets or output_char_offsets:
return Wav2Vec2CTCTokenizerOutput(
text=text,
char_offsets=string_output["char_offsets"],
word_offsets=string_output["word_offsets"],
)
else:
return text
# overwritten from `tokenization_utils_base.py` because tokenizer can output
# `ModelOutput` which should not be a list for batched output and
# because we need docs for `output_char_offsets` here
def batch_decode(
self,
sequences: Union[List[int], List[List[int]], "np.ndarray", "torch.Tensor", "tf.Tensor"],
skip_special_tokens: bool = False,
clean_up_tokenization_spaces: bool = None,
output_char_offsets: bool = False,
output_word_offsets: bool = False,
**kwargs,
) -> List[str]:
"""
Convert a list of lists of token ids into a list of strings by calling decode.
Args:
sequences (`Union[List[int], List[List[int]], np.ndarray, torch.Tensor, tf.Tensor]`):
List of tokenized input ids. Can be obtained using the `__call__` method.
skip_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not to remove special tokens in the decoding.
clean_up_tokenization_spaces (`bool`, *optional*):
Whether or not to clean up the tokenization spaces.
output_char_offsets (`bool`, *optional*, defaults to `False`):
Whether or not to output character offsets. Character offsets can be used in combination with the
sampling rate and model downsampling rate to compute the time-stamps of transcribed characters.
<Tip>
Please take a look at the Example of [`~Wav2Vec2CTCTokenizer.decode`] to better understand how to make
use of `output_char_offsets`. [`~Wav2Vec2CTCTokenizer.batch_decode`] works the same way with batched
output.
</Tip>
output_word_offsets (`bool`, *optional*, defaults to `False`):
Whether or not to output word offsets. Word offsets can be used in combination with the sampling rate
and model downsampling rate to compute the time-stamps of transcribed words.
<Tip>
Please take a look at the Example of [`~Wav2Vec2CTCTokenizer.decode`] to better understand how to make
use of `output_word_offsets`. [`~Wav2Vec2CTCTokenizer.batch_decode`] works the same way with batched
output.
</Tip>
kwargs (additional keyword arguments, *optional*):
Will be passed to the underlying model specific decode method.
Returns:
`List[str]` or [`~models.wav2vec2.tokenization_wav2vec2.Wav2Vec2CTCTokenizerOutput`]: The list of decoded
sentences. Will be a [`~models.wav2vec2.tokenization_wav2vec2.Wav2Vec2CTCTokenizerOutput`] when
`output_char_offsets == True` or `output_word_offsets == True`.
"""
batch_decoded = [
self.decode(
seq,
skip_special_tokens=skip_special_tokens,
clean_up_tokenization_spaces=clean_up_tokenization_spaces,
output_char_offsets=output_char_offsets,
output_word_offsets=output_word_offsets,
**kwargs,
)
for seq in sequences
]
if output_char_offsets or output_word_offsets:
# transform list of dicts to dict of lists
return Wav2Vec2CTCTokenizerOutput({k: [d[k] for d in batch_decoded] for k in batch_decoded[0]})
return batch_decoded
# overwritten from `tokenization_utils_base.py` because we need docs for `output_char_offsets`
# and `output_word_offsets` here
def decode(
self,
token_ids: Union[int, List[int], "np.ndarray", "torch.Tensor", "tf.Tensor"],
skip_special_tokens: bool = False,
clean_up_tokenization_spaces: bool = None,
output_char_offsets: bool = False,
output_word_offsets: bool = False,
**kwargs,
) -> str:
"""
Converts a sequence of ids in a string, using the tokenizer and vocabulary with options to remove special
tokens and clean up tokenization spaces.
Similar to doing `self.convert_tokens_to_string(self.convert_ids_to_tokens(token_ids))`.
Args:
token_ids (`Union[int, List[int], np.ndarray, torch.Tensor, tf.Tensor]`):
List of tokenized input ids. Can be obtained using the `__call__` method.
skip_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not to remove special tokens in the decoding.
clean_up_tokenization_spaces (`bool`, *optional*):
Whether or not to clean up the tokenization spaces.
output_char_offsets (`bool`, *optional*, defaults to `False`):
Whether or not to output character offsets. Character offsets can be used in combination with the
sampling rate and model downsampling rate to compute the time-stamps of transcribed characters.
<Tip>
Please take a look at the example below to better understand how to make use of `output_char_offsets`.
</Tip>
output_word_offsets (`bool`, *optional*, defaults to `False`):
Whether or not to output word offsets. Word offsets can be used in combination with the sampling rate
and model downsampling rate to compute the time-stamps of transcribed words.
<Tip>
Please take a look at the example below to better understand how to make use of `output_word_offsets`.
</Tip>
kwargs (additional keyword arguments, *optional*):
Will be passed to the underlying model specific decode method.
Returns:
`str` or [`~models.wav2vec2.tokenization_wav2vec2.Wav2Vec2CTCTokenizerOutput`]: The list of decoded
sentences. Will be a [`~models.wav2vec2.tokenization_wav2vec2.Wav2Vec2CTCTokenizerOutput`] when
`output_char_offsets == True` or `output_word_offsets == True`.
Example:
```python
>>> # Let's see how to retrieve time steps for a model
>>> from transformers import AutoTokenizer, AutoFeatureExtractor, AutoModelForCTC
>>> from datasets import load_dataset
>>> import datasets
>>> import torch
>>> # import model, feature extractor, tokenizer
>>> model = AutoModelForCTC.from_pretrained("facebook/wav2vec2-base-960h")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/wav2vec2-base-960h")
>>> feature_extractor = AutoFeatureExtractor.from_pretrained("facebook/wav2vec2-base-960h")
>>> # load first sample of English common_voice
>>> dataset = load_dataset("mozilla-foundation/common_voice_11_0", "en", split="train", streaming=True, trust_remote_code=True)
>>> dataset = dataset.cast_column("audio", datasets.Audio(sampling_rate=16_000))
>>> dataset_iter = iter(dataset)
>>> sample = next(dataset_iter)
>>> # forward sample through model to get greedily predicted transcription ids
>>> input_values = feature_extractor(sample["audio"]["array"], return_tensors="pt").input_values
>>> logits = model(input_values).logits[0]
>>> pred_ids = torch.argmax(logits, axis=-1)
>>> # retrieve word stamps (analogous commands for `output_char_offsets`)
>>> outputs = tokenizer.decode(pred_ids, output_word_offsets=True)
>>> # compute `time_offset` in seconds as product of downsampling ratio and sampling_rate
>>> time_offset = model.config.inputs_to_logits_ratio / feature_extractor.sampling_rate
>>> word_offsets = [
... {
... "word": d["word"],
... "start_time": round(d["start_offset"] * time_offset, 2),
... "end_time": round(d["end_offset"] * time_offset, 2),
... }
... for d in outputs.word_offsets
... ]
>>> # compare word offsets with audio `en_train_0/common_voice_en_19121553.mp3` online on the dataset viewer:
>>> # https://huggingface.co/datasets/mozilla-foundation/common_voice_11_0/viewer/en
>>> word_offsets[:3]
[{'word': 'THE', 'start_time': 0.7, 'end_time': 0.78}, {'word': 'TRICK', 'start_time': 0.88, 'end_time': 1.08}, {'word': 'APPEARS', 'start_time': 1.2, 'end_time': 1.64}]
```"""
# Convert inputs to python lists
token_ids = to_py_obj(token_ids)
return self._decode(
token_ids=token_ids,
skip_special_tokens=skip_special_tokens,
clean_up_tokenization_spaces=clean_up_tokenization_spaces,
output_char_offsets=output_char_offsets,
output_word_offsets=output_word_offsets,
**kwargs,
)
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.vocab, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
return (vocab_file,)
class Wav2Vec2Tokenizer(PreTrainedTokenizer):
"""
Constructs a Wav2Vec2 tokenizer.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains some of the main methods. Users should refer to
the superclass for more information regarding such methods.
Args:
vocab_file (`str`):
File containing the vocabulary.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sentence token.
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sentence token.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
word_delimiter_token (`str`, *optional*, defaults to `"|"`):
The token used for defining the end of a word.
do_lower_case (`bool`, *optional*, defaults to `False`):
Whether or not to lowercase the output when decoding.
do_normalize (`bool`, *optional*, defaults to `False`):
Whether or not to zero-mean unit-variance normalize the input. Normalizing can help to significantly
improve the performance for some models, *e.g.*,
[wav2vec2-lv60](https://huggingface.co/models?search=lv60).
return_attention_mask (`bool`, *optional*, defaults to `False`):
Whether or not [`~Wav2Vec2Tokenizer.__call__`] should return `attention_mask`.
<Tip>
Wav2Vec2 models that have set `config.feat_extract_norm == "group"`, such as
[wav2vec2-base](https://huggingface.co/facebook/wav2vec2-base-960h), have **not** been trained using
`attention_mask`. For such models, `input_values` should simply be padded with 0 and no `attention_mask`
should be passed.
For Wav2Vec2 models that have set `config.feat_extract_norm == "layer"`, such as
[wav2vec2-lv60](https://huggingface.co/facebook/wav2vec2-large-960h-lv60-self), `attention_mask` should be
passed for batched inference.
</Tip>
**kwargs
Additional keyword arguments passed along to [`PreTrainedTokenizer`]
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = {
"vocab_file": {
"facebook/wav2vec2-base-960h": "https://huggingface.co/facebook/wav2vec2-base-960h/resolve/main/vocab.json"
},
"tokenizer_config_file": {
"facebook/wav2vec2-base-960h": (
"https://huggingface.co/facebook/wav2vec2-base-960h/resolve/main/tokenizer.json"
),
},
}
model_input_names = ["input_values", "attention_mask"]
def __init__(
self,
vocab_file,
bos_token="<s>",
eos_token="</s>",
unk_token="<unk>",
pad_token="<pad>",
word_delimiter_token="|",
do_lower_case=False,
do_normalize=False,
return_attention_mask=False,
**kwargs,
):
warnings.warn(
"The class `Wav2Vec2Tokenizer` is deprecated and will be removed in version 5 of Transformers. Please use"
" `Wav2Vec2Processor` or `Wav2Vec2CTCTokenizer` instead.",
FutureWarning,
)
self._word_delimiter_token = word_delimiter_token
self.do_lower_case = do_lower_case
self.return_attention_mask = return_attention_mask
self.do_normalize = do_normalize
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
super().__init__(
unk_token=unk_token,
bos_token=bos_token,
eos_token=eos_token,
pad_token=pad_token,
do_lower_case=do_lower_case,
do_normalize=do_normalize,
return_attention_mask=return_attention_mask,
word_delimiter_token=word_delimiter_token,
**kwargs,
)
@property
def word_delimiter_token(self) -> str:
"""
`str`: Padding token. Log an error if used while not having been set.
"""
if self._word_delimiter_token is None and self.verbose:
logger.error("Using word_delimiter_token, but it is not set yet.")
return None
return str(self._word_delimiter_token)
@property
def word_delimiter_token_id(self) -> Optional[int]:
"""
`Optional[int]`: Id of the word_delimiter_token in the vocabulary. Returns `None` if the token has not been
set.
"""
if self._word_delimiter_token is None:
return None
return self.convert_tokens_to_ids(self.word_delimiter_token)
@word_delimiter_token.setter
def word_delimiter_token(self, value):
self._word_delimiter_token = value
@word_delimiter_token_id.setter
def word_delimiter_token_id(self, value):
self._word_delimiter_token = self.convert_tokens_to_ids(value)
@add_end_docstrings(WAV2VEC2_KWARGS_DOCSTRING)
def __call__(
self,
raw_speech: Union[np.ndarray, List[float], List[np.ndarray], List[List[float]]],
padding: Union[bool, str, PaddingStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
padding_side: Optional[bool] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
"""
Main method to tokenize and prepare for the model one or several sequence(s) or one or several pair(s) of
sequences.
Args:
raw_speech (`np.ndarray`, `List[float]`, `List[np.ndarray]`, `List[List[float]]`):
The sequence or batch of sequences to be padded. Each sequence can be a numpy array, a list of float
values, a list of numpy array or a list of list of float values. Must be mono channel audio, not
stereo, i.e. single float per timestep.
padding_side (`str`, *optional*):
The side on which the model should have padding applied. Should be selected between ['right', 'left'].
Default value is picked from the class attribute of the same name.
"""
is_batched_numpy = isinstance(raw_speech, np.ndarray) and len(raw_speech.shape) > 1
if is_batched_numpy and len(raw_speech.shape) > 2:
raise ValueError(f"Only mono-channel audio is supported for input to {self}")
is_batched = is_batched_numpy or (
isinstance(raw_speech, (list, tuple)) and (isinstance(raw_speech[0], (np.ndarray, tuple, list)))
)
# make sure input is in list format
if is_batched and not isinstance(raw_speech[0], np.ndarray):
raw_speech = [np.asarray(speech) for speech in raw_speech]
elif not is_batched and not isinstance(raw_speech, np.ndarray):
raw_speech = np.asarray(raw_speech)
# always return batch
if not is_batched:
raw_speech = [raw_speech]
# zero-mean and unit-variance normalization
if self.do_normalize:
raw_speech = [(x - np.mean(x)) / np.sqrt(np.var(x) + 1e-5) for x in raw_speech]
# convert into correct format for padding
encoded_inputs = BatchEncoding({"input_values": raw_speech})
padded_inputs = self.pad(
encoded_inputs,
padding=padding,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
padding_side=padding_side,
return_attention_mask=self.return_attention_mask,
return_tensors=return_tensors,
verbose=verbose,
)
return padded_inputs
@property
def vocab_size(self) -> int:
return len(self.decoder)
def get_vocab(self) -> Dict:
return dict(self.encoder, **self.added_tokens_encoder)
def _convert_token_to_id(self, token: str) -> int:
"""Converts a token (str) in an index (integer) using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index: int) -> str:
"""Converts an index (integer) in a token (str) using the vocab."""
result = self.decoder.get(index, self.unk_token)
return result
def convert_tokens_to_string(self, tokens: List[str]) -> str:
"""
Converts a connectionist-temporal-classification (CTC) output tokens into a single string.
"""
# group same tokens into non-repeating tokens in CTC style decoding
grouped_tokens = [token_group[0] for token_group in groupby(tokens)]
# filter self.pad_token which is used as CTC-blank token
filtered_tokens = list(filter(lambda token: token != self.pad_token, grouped_tokens))
# replace delimiter token
string = "".join([" " if token == self.word_delimiter_token else token for token in filtered_tokens]).strip()
if self.do_lower_case:
string = string.lower()
return string
def _decode(
self,
token_ids: List[int],
skip_special_tokens: bool = False,
clean_up_tokenization_spaces: bool = None,
**kwargs,
) -> str:
"""
special _decode function is needed for Wav2Vec2Tokenizer because added tokens should be treated exactly the
same as tokens of the base vocabulary and therefore the function `convert_tokens_to_string` has to be called on
the whole token list and not individually on added tokens
"""
filtered_tokens = self.convert_ids_to_tokens(token_ids, skip_special_tokens=skip_special_tokens)
result = []
for token in filtered_tokens:
if skip_special_tokens and (
token in self.all_special_ids or (token != self.pad_token and token in self.all_special_tokens)
):
continue
result.append(token)
text = self.convert_tokens_to_string(result)
clean_up_tokenization_spaces = (
clean_up_tokenization_spaces
if clean_up_tokenization_spaces is not None
else self.clean_up_tokenization_spaces
)
if clean_up_tokenization_spaces:
clean_text = self.clean_up_tokenization(text)
return clean_text
else:
return text
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
return (vocab_file,)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/convert_wav2vec2_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Wav2Vec2 checkpoint."""
import argparse
import json
import os
import fairseq
import torch
from fairseq.data import Dictionary
from transformers import (
Wav2Vec2Config,
Wav2Vec2CTCTokenizer,
Wav2Vec2FeatureExtractor,
Wav2Vec2ForCTC,
Wav2Vec2ForPreTraining,
Wav2Vec2Processor,
logging,
)
from transformers.models.wav2vec2.modeling_wav2vec2 import Wav2Vec2ForSequenceClassification
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
MAPPING = {
"post_extract_proj": "feature_projection.projection",
"encoder.pos_conv.0": "encoder.pos_conv_embed.conv",
"self_attn.k_proj": "encoder.layers.*.attention.k_proj",
"self_attn.v_proj": "encoder.layers.*.attention.v_proj",
"self_attn.q_proj": "encoder.layers.*.attention.q_proj",
"self_attn.out_proj": "encoder.layers.*.attention.out_proj",
"self_attn_layer_norm": "encoder.layers.*.layer_norm",
"fc1": "encoder.layers.*.feed_forward.intermediate_dense",
"fc2": "encoder.layers.*.feed_forward.output_dense",
"final_layer_norm": "encoder.layers.*.final_layer_norm",
"encoder.layer_norm": "encoder.layer_norm",
"adapter_layer": "encoder.layers.*.adapter_layer",
"w2v_model.layer_norm": "feature_projection.layer_norm",
"quantizer.weight_proj": "quantizer.weight_proj",
"quantizer.vars": "quantizer.codevectors",
"project_q": "project_q",
"final_proj": "project_hid",
"w2v_encoder.proj": "lm_head",
"mask_emb": "masked_spec_embed",
"pooling_layer.linear": "projector",
"pooling_layer.projection": "classifier",
}
TOP_LEVEL_KEYS = [
"lm_head",
"quantizer.weight_proj",
"quantizer.codevectors",
"project_q",
"project_hid",
"projector",
"classifier",
]
def read_txt_into_dict(filename):
result = {}
with open(filename, "r") as file:
for line_number, line in enumerate(file):
line = line.strip()
if line:
words = line.split()
key = line_number
value = words[0]
result[key] = value
return result
def set_recursively(key, value, full_name, weight_type, hf_pointer):
for attribute in key.split("."):
hf_pointer = getattr(hf_pointer, attribute)
hf_param_name = None
for param_key in PARAM_MAPPING.keys():
if full_name.endswith(param_key):
hf_param_name = PARAM_MAPPING[full_name.split(".")[-1]]
weight_type = "param"
# fairseq uses nn.utils.weight_norm() while transformers switches to nn.utils.parametrizations.weight_norm()
# the mapping between two versions:
# https://github.com/pytorch/pytorch/blob/56935684c3dfad7841c83c719eeebecb560fe466/torch/nn/utils/parametrizations.py#L389-L395
if weight_type is not None and weight_type != "param":
if weight_type == "weight_g" and not hasattr(hf_pointer, "weight_g"):
hf_shape = hf_pointer.parametrizations.weight.original0.shape
elif weight_type == "weight_v" and not hasattr(hf_pointer, "weight_v"):
hf_shape = hf_pointer.parametrizations.weight.original1.shape
else:
hf_shape = getattr(hf_pointer, weight_type).shape
elif weight_type is not None and weight_type == "param":
shape_pointer = hf_pointer
for attribute in hf_param_name.split("."):
shape_pointer = getattr(shape_pointer, attribute)
hf_shape = shape_pointer.shape
# let's reduce dimension
value = value[0]
else:
hf_shape = hf_pointer.shape
if hf_shape != value.shape:
raise ValueError(
f"Shape of hf {key + '.' + weight_type if weight_type is not None else ''} is {hf_shape}, but should be"
f" {value.shape} for {full_name}"
)
if weight_type == "weight":
hf_pointer.weight.data = value
elif weight_type == "weight_g":
if hasattr(hf_pointer, "weight_g"):
hf_pointer.weight_g.data = value
else:
hf_pointer.parametrizations.weight.original0.data = value
elif weight_type == "weight_v":
if hasattr(hf_pointer, "weight_v"):
hf_pointer.weight_v.data = value
else:
hf_pointer.parametrizations.weight.original1.data = value
elif weight_type == "bias":
hf_pointer.bias.data = value
elif weight_type == "param":
for attribute in hf_param_name.split("."):
hf_pointer = getattr(hf_pointer, attribute)
hf_pointer.data = value
else:
hf_pointer.data = value
logger.info(f"{key + '.' + weight_type if weight_type is not None else ''} was initialized from {full_name}.")
def rename_dict(key, value, full_name, weight_type, hf_dict):
hf_param_name = None
for param_key in PARAM_MAPPING.keys():
if full_name.endswith(param_key):
hf_param_name = PARAM_MAPPING[full_name.split(".")[-1]]
weight_type = "param"
if weight_type is not None and weight_type != "param":
full_key = ".".join([key, weight_type])
elif weight_type is not None and weight_type == "param":
full_key = ".".join([key, hf_param_name])
else:
full_key = key
hf_dict[full_key] = value if "lm_head" in full_key else value[0]
PARAM_MAPPING = {
"W_a": "linear_1.weight",
"W_b": "linear_2.weight",
"b_a": "linear_1.bias",
"b_b": "linear_2.bias",
"ln_W": "norm.weight",
"ln_b": "norm.bias",
}
def load_wav2vec2_layer(name, value, hf_model=None, hf_dict=None):
is_used = False
for key, mapped_key in MAPPING.items():
mapped_key = "wav2vec2." + mapped_key if mapped_key not in TOP_LEVEL_KEYS else mapped_key
if key in name or key.split("w2v_model.")[-1] == name.split(".")[0]:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "bias" in name:
weight_type = "bias"
elif "weight" in name:
# TODO: don't match quantizer.weight_proj
weight_type = "weight"
else:
weight_type = None
if hf_dict is not None:
rename_dict(mapped_key, value, name, weight_type, hf_dict)
else:
set_recursively(mapped_key, value, name, weight_type, hf_model)
return is_used
return is_used
def recursively_load_weights(fairseq_model, hf_model, is_headless):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.wav2vec2.feature_extractor
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
is_used = load_wav2vec2_layer(name, value, hf_model)
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
def load_conv_layer(full_name, value, feature_extractor, unused_weights, use_group_norm):
name = full_name.split("conv_layers.")[-1]
items = name.split(".")
layer_id = int(items[0])
type_id = int(items[1])
if type_id == 0:
if "bias" in name:
if value.shape != feature_extractor.conv_layers[layer_id].conv.bias.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.bias.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.bias.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
if value.shape != feature_extractor.conv_layers[layer_id].conv.weight.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.weight.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif (type_id == 2 and not use_group_norm) or (type_id == 2 and layer_id == 0 and use_group_norm):
if "bias" in name:
if value.shape != feature_extractor.conv_layers[layer_id].layer_norm.bias.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].layer_norm.bias.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].layer_norm.bias.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
if value.shape != feature_extractor.conv_layers[layer_id].layer_norm.weight.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].layer_norm.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].layer_norm.weight.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
else:
unused_weights.append(full_name)
@torch.no_grad()
def convert_wav2vec2_checkpoint(
checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True, is_seq_class=False
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if config_path is not None:
config = Wav2Vec2Config.from_pretrained(config_path)
else:
config = Wav2Vec2Config()
if is_seq_class:
id2label = read_txt_into_dict(dict_path)
config.id2label = id2label
hf_wav2vec = Wav2Vec2ForSequenceClassification(config)
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=True,
return_attention_mask=True,
)
feature_extractor.save_pretrained(pytorch_dump_folder_path)
elif is_finetuned:
if dict_path:
target_dict = Dictionary.load(dict_path)
# important change bos & pad token id since CTC symbol is <pad> and
# not <s> as in fairseq
config.bos_token_id = target_dict.pad_index
config.pad_token_id = target_dict.bos_index
config.eos_token_id = target_dict.eos_index
config.vocab_size = len(target_dict.symbols)
vocab_path = os.path.join(pytorch_dump_folder_path, "vocab.json")
if not os.path.isdir(pytorch_dump_folder_path):
logger.error("--pytorch_dump_folder_path ({}) should be a directory".format(pytorch_dump_folder_path))
return
os.makedirs(pytorch_dump_folder_path, exist_ok=True)
vocab_dict = target_dict.indices
# fairseq has the <pad> and <s> switched
vocab_dict["<pad>"] = 0
vocab_dict["<s>"] = 1
with open(vocab_path, "w", encoding="utf-8") as vocab_handle:
json.dump(vocab_dict, vocab_handle)
tokenizer = Wav2Vec2CTCTokenizer(
vocab_path,
unk_token=target_dict.unk_word,
pad_token=target_dict.pad_word,
bos_token=target_dict.bos_word,
eos_token=target_dict.eos_word,
word_delimiter_token="|",
do_lower_case=False,
)
return_attention_mask = True if config.feat_extract_norm == "layer" else False
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=True,
return_attention_mask=return_attention_mask,
)
processor = Wav2Vec2Processor(feature_extractor=feature_extractor, tokenizer=tokenizer)
processor.save_pretrained(pytorch_dump_folder_path)
hf_wav2vec = Wav2Vec2ForCTC(config)
else:
hf_wav2vec = Wav2Vec2ForPreTraining(config)
if is_finetuned or is_seq_class:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task(
[checkpoint_path], arg_overrides={"data": "/".join(dict_path.split("/")[:-1])}
)
else:
task_arg = argparse.Namespace(task="audio_pretraining")
task = fairseq.tasks.setup_task(task_arg)
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task([checkpoint_path], task=task)
model = model[0].eval()
recursively_load_weights(model, hf_wav2vec, not is_finetuned)
hf_wav2vec.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model.")
parser.add_argument("--checkpoint_path", default=None, type=str, help="Path to fairseq checkpoint")
parser.add_argument("--dict_path", default=None, type=str, help="Path to dict of fine-tuned model")
parser.add_argument("--config_path", default=None, type=str, help="Path to hf config.json of model to convert")
parser.add_argument(
"--not_finetuned", action="store_true", help="Whether the model to convert is a fine-tuned model or not"
)
parser.add_argument(
"--is_seq_class",
action="store_true",
help="Whether the model to convert is a fine-tuned sequence classification model or not",
)
args = parser.parse_args()
is_finetuned = not args.not_finetuned and not args.is_seq_class
convert_wav2vec2_checkpoint(
args.checkpoint_path,
args.pytorch_dump_folder_path,
args.config_path,
args.dict_path,
is_finetuned,
args.is_seq_class,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/processing_wav2vec2.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Speech processor class for Wav2Vec2
"""
import warnings
from contextlib import contextmanager
from typing import List, Optional, Union
from ...processing_utils import ProcessingKwargs, ProcessorMixin, Unpack
from ...tokenization_utils_base import AudioInput, PreTokenizedInput, TextInput
from .feature_extraction_wav2vec2 import Wav2Vec2FeatureExtractor
from .tokenization_wav2vec2 import Wav2Vec2CTCTokenizer
class Wav2Vec2ProcessorKwargs(ProcessingKwargs, total=False):
_defaults = {}
class Wav2Vec2Processor(ProcessorMixin):
r"""
Constructs a Wav2Vec2 processor which wraps a Wav2Vec2 feature extractor and a Wav2Vec2 CTC tokenizer into a single
processor.
[`Wav2Vec2Processor`] offers all the functionalities of [`Wav2Vec2FeatureExtractor`] and [`PreTrainedTokenizer`].
See the docstring of [`~Wav2Vec2Processor.__call__`] and [`~Wav2Vec2Processor.decode`] for more information.
Args:
feature_extractor (`Wav2Vec2FeatureExtractor`):
An instance of [`Wav2Vec2FeatureExtractor`]. The feature extractor is a required input.
tokenizer ([`PreTrainedTokenizer`]):
An instance of [`PreTrainedTokenizer`]. The tokenizer is a required input.
"""
feature_extractor_class = "Wav2Vec2FeatureExtractor"
tokenizer_class = "AutoTokenizer"
def __init__(self, feature_extractor, tokenizer):
super().__init__(feature_extractor, tokenizer)
self.current_processor = self.feature_extractor
self._in_target_context_manager = False
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, **kwargs):
try:
return super().from_pretrained(pretrained_model_name_or_path, **kwargs)
except (OSError, ValueError):
warnings.warn(
f"Loading a tokenizer inside {cls.__name__} from a config that does not"
" include a `tokenizer_class` attribute is deprecated and will be "
"removed in v5. Please add `'tokenizer_class': 'Wav2Vec2CTCTokenizer'`"
" attribute to either your `config.json` or `tokenizer_config.json` "
"file to suppress this warning: ",
FutureWarning,
)
feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(pretrained_model_name_or_path, **kwargs)
tokenizer = Wav2Vec2CTCTokenizer.from_pretrained(pretrained_model_name_or_path, **kwargs)
return cls(feature_extractor=feature_extractor, tokenizer=tokenizer)
def __call__(
self,
audio: AudioInput = None,
text: Optional[Union[str, List[str], TextInput, PreTokenizedInput]] = None,
images=None,
videos=None,
**kwargs: Unpack[Wav2Vec2ProcessorKwargs],
):
"""
When used in normal mode, this method forwards all its arguments to Wav2Vec2FeatureExtractor's
[`~Wav2Vec2FeatureExtractor.__call__`] and returns its output. If used in the context
[`~Wav2Vec2Processor.as_target_processor`] this method forwards all its arguments to PreTrainedTokenizer's
[`~PreTrainedTokenizer.__call__`]. Please refer to the docstring of the above two methods for more information.
"""
if "raw_speech" in kwargs:
warnings.warn("Using `raw_speech` as a keyword argument is deprecated. Use `audio` instead.")
audio = kwargs.pop("raw_speech")
if audio is None and text is None:
raise ValueError("You need to specify either an `audio` or `text` input to process.")
output_kwargs = self._merge_kwargs(
Wav2Vec2ProcessorKwargs,
tokenizer_init_kwargs=self.tokenizer.init_kwargs,
**kwargs,
)
# For backward compatibility
if self._in_target_context_manager:
return self.current_processor(
audio,
**output_kwargs["audio_kwargs"],
**output_kwargs["text_kwargs"],
**output_kwargs["common_kwargs"],
)
if audio is not None:
inputs = self.feature_extractor(audio, **output_kwargs["audio_kwargs"])
if text is not None:
encodings = self.tokenizer(text, **output_kwargs["text_kwargs"])
if text is None:
return inputs
elif audio is None:
return encodings
else:
inputs["labels"] = encodings["input_ids"]
return inputs
def pad(self, *args, **kwargs):
"""
When used in normal mode, this method forwards all its arguments to Wav2Vec2FeatureExtractor's
[`~Wav2Vec2FeatureExtractor.pad`] and returns its output. If used in the context
[`~Wav2Vec2Processor.as_target_processor`] this method forwards all its arguments to PreTrainedTokenizer's
[`~PreTrainedTokenizer.pad`]. Please refer to the docstring of the above two methods for more information.
"""
# For backward compatibility
if self._in_target_context_manager:
return self.current_processor.pad(*args, **kwargs)
input_features = kwargs.pop("input_features", None)
labels = kwargs.pop("labels", None)
if len(args) > 0:
input_features = args[0]
args = args[1:]
if input_features is not None:
input_features = self.feature_extractor.pad(input_features, *args, **kwargs)
if labels is not None:
labels = self.tokenizer.pad(labels, **kwargs)
if labels is None:
return input_features
elif input_features is None:
return labels
else:
input_features["labels"] = labels["input_ids"]
return input_features
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to PreTrainedTokenizer's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to PreTrainedTokenizer's [`~PreTrainedTokenizer.decode`]. Please refer
to the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
@contextmanager
def as_target_processor(self):
"""
Temporarily sets the tokenizer for processing the input. Useful for encoding the labels when fine-tuning
Wav2Vec2.
"""
warnings.warn(
"`as_target_processor` is deprecated and will be removed in v5 of Transformers. You can process your "
"labels by using the argument `text` of the regular `__call__` method (either in the same call as "
"your audio inputs, or in a separate call."
)
self._in_target_context_manager = True
self.current_processor = self.tokenizer
yield
self.current_processor = self.feature_extractor
self._in_target_context_manager = False
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/modeling_tf_wav2vec2.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TensorFlow Wav2Vec2 model."""
from __future__ import annotations
import warnings
from dataclasses import dataclass
from typing import Any, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput, TFSequenceClassifierOutput
from ...modeling_tf_utils import (
TFPreTrainedModel,
get_initializer,
keras,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_wav2vec2 import Wav2Vec2Config
logger = logging.get_logger(__name__)
_HIDDEN_STATES_START_POSITION = 2
_CHECKPOINT_FOR_DOC = "facebook/wav2vec2-base-960h"
_CONFIG_FOR_DOC = "Wav2Vec2Config"
LARGE_NEGATIVE = -1e8
@dataclass
class TFWav2Vec2BaseModelOutput(ModelOutput):
"""
Output type of [`TFWav2Vec2BaseModelOutput`], with potential hidden states and attentions.
Args:
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
extract_features (`tf.Tensor` of shape `(batch_size, sequence_length, conv_dim[-1])`):
Sequence of extracted feature vectors of the last convolutional layer of the model.
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
last_hidden_state: tf.Tensor = None
extract_features: tf.Tensor = None
hidden_states: Tuple[tf.Tensor] | None = None
attentions: Tuple[tf.Tensor] | None = None
def _sample_without_replacement(distribution, num_samples):
"""
Categorical sampling without replacement is currently not implemented. The gumbel-max trick will do for now - see
https://github.com/tensorflow/tensorflow/issues/9260 for more info
"""
z = -tf.math.log(tf.random.uniform(shape_list(distribution), 0, 1))
_, indices = tf.nn.top_k(distribution + z, num_samples)
return indices
def _scatter_values_on_batch_indices(values, batch_indices, output_shape):
"""
Scatter function as in PyTorch with indices in format (batch_dim, indixes)
"""
indices_shape = shape_list(batch_indices)
# broadcast batch dim to indices_shape
broad_casted_batch_dims = tf.reshape(
tf.broadcast_to(tf.expand_dims(tf.range(indices_shape[0]), axis=-1), indices_shape), [1, -1]
)
# transform batch_indices to pair_indices
pair_indices = tf.transpose(tf.concat([broad_casted_batch_dims, tf.reshape(batch_indices, [1, -1])], 0))
# scatter values to pair indices
return tf.scatter_nd(pair_indices, tf.reshape(values, [-1]), output_shape)
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
min_masks: int = 0,
) -> tf.Tensor:
"""
Computes random mask spans for a given shape
Args:
shape: the shape for which to compute masks.
should be of size 2 where first element is batch size and 2nd is timesteps
attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements
mask_prob:
probability for each token to be chosen as start of the span to be masked. this will be multiplied by
number of timesteps divided by length of mask span to mask approximately this percentage of all elements.
however due to overlaps, the actual number will be smaller (unless no_overlap is True)
mask_length: size of the mask
min_masks: minimum number of masked spans
Adapted from [fairseq's
data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376).
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
tf.debugging.assert_less(
mask_length,
sequence_length,
message=(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length} and"
f" `sequence_length`: {sequence_length}`"
),
)
# compute number of masked spans in batch
num_masked_spans = mask_prob * tf.cast(sequence_length, tf.float32) / mask_length + tf.random.uniform((1,))
num_masked_spans = tf.maximum(num_masked_spans, min_masks)
num_masked_spans = tf.cast(num_masked_spans, tf.int32)
# make sure num masked indices <= sequence_length
num_masked_spans = tf.math.minimum(sequence_length // mask_length, num_masked_spans)
num_masked_spans = tf.squeeze(num_masked_spans)
# SpecAugment mask to fill
spec_aug_mask = tf.zeros((batch_size, sequence_length), dtype=tf.int32)
# uniform distribution to sample from, make sure that offset samples are < sequence_length
uniform_dist = tf.ones((batch_size, sequence_length - (mask_length - 1)))
# get random indices to mask
spec_aug_mask_idxs = _sample_without_replacement(uniform_dist, num_masked_spans)
# expand masked indices to masked spans
spec_aug_mask_idxs = tf.expand_dims(spec_aug_mask_idxs, -1)
spec_aug_mask_idxs = tf.tile(spec_aug_mask_idxs, (1, 1, mask_length))
spec_aug_mask_idxs = tf.reshape(spec_aug_mask_idxs, (batch_size, num_masked_spans * mask_length))
offsets = tf.range(mask_length)[tf.newaxis, tf.newaxis, :]
offsets = tf.tile(offsets, (batch_size, num_masked_spans, 1))
offsets = tf.reshape(offsets, (batch_size, num_masked_spans * mask_length))
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# scatter indices to mask
spec_aug_mask = _scatter_values_on_batch_indices(
tf.ones_like(spec_aug_mask_idxs), spec_aug_mask_idxs, tf.shape(spec_aug_mask)
)
return spec_aug_mask
# Copied from transformers.models.bart.modeling_tf_bart._expand_mask
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE
class TFWav2Vec2GroupNorm(keras.layers.Layer):
"""
From tensorflow-addons https://www.tensorflow.org/addons/api_docs/python/tfa/layers/GroupNormalization
"""
def __init__(
self,
groups: int = 32,
axis: int = -1,
epsilon: float = 1e-3,
center: bool = True,
scale: bool = True,
beta_initializer: keras.initializers.Initializer = "zeros",
gamma_initializer: keras.initializers.Initializer = "ones",
beta_regularizer: keras.regularizers.Regularizer = None,
gamma_regularizer: keras.regularizers.Regularizer = None,
beta_constraint: keras.constraints.Constraint = None,
gamma_constraint: keras.constraints.Constraint = None,
**kwargs,
):
super().__init__(**kwargs)
self.supports_masking = True
self.groups = groups
self.axis = axis
self.epsilon = epsilon
self.center = center
self.scale = scale
self.beta_initializer = keras.initializers.get(beta_initializer)
self.gamma_initializer = keras.initializers.get(gamma_initializer)
self.beta_regularizer = keras.regularizers.get(beta_regularizer)
self.gamma_regularizer = keras.regularizers.get(gamma_regularizer)
self.beta_constraint = keras.constraints.get(beta_constraint)
self.gamma_constraint = keras.constraints.get(gamma_constraint)
self._check_axis()
def build(self, input_shape):
self._check_if_input_shape_is_none(input_shape)
self._set_number_of_groups_for_instance_norm(input_shape)
self._check_size_of_dimensions(input_shape)
self._create_input_spec(input_shape)
self._add_gamma_weight(input_shape)
self._add_beta_weight(input_shape)
self.built = True
super().build(input_shape)
def call(self, inputs):
input_shape = keras.backend.int_shape(inputs)
tensor_input_shape = tf.shape(inputs)
reshaped_inputs, group_shape = self._reshape_into_groups(inputs, input_shape, tensor_input_shape)
normalized_inputs = self._apply_normalization(reshaped_inputs, input_shape)
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
outputs = tf.reshape(normalized_inputs, tensor_input_shape)
else:
outputs = normalized_inputs
return outputs
def get_config(self):
config = {
"groups": self.groups,
"axis": self.axis,
"epsilon": self.epsilon,
"center": self.center,
"scale": self.scale,
"beta_initializer": keras.initializers.serialize(self.beta_initializer),
"gamma_initializer": keras.initializers.serialize(self.gamma_initializer),
"beta_regularizer": keras.regularizers.serialize(self.beta_regularizer),
"gamma_regularizer": keras.regularizers.serialize(self.gamma_regularizer),
"beta_constraint": keras.constraints.serialize(self.beta_constraint),
"gamma_constraint": keras.constraints.serialize(self.gamma_constraint),
}
base_config = super().get_config()
return {**base_config, **config}
def compute_output_shape(self, input_shape):
return input_shape
def _reshape_into_groups(self, inputs, input_shape, tensor_input_shape):
group_shape = [tensor_input_shape[i] for i in range(len(input_shape))]
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
group_shape[self.axis] = input_shape[self.axis] // self.groups
group_shape.insert(self.axis, self.groups)
group_shape = tf.stack(group_shape)
reshaped_inputs = tf.reshape(inputs, group_shape)
return reshaped_inputs, group_shape
else:
return inputs, group_shape
def _apply_normalization(self, reshaped_inputs, input_shape):
group_shape = keras.backend.int_shape(reshaped_inputs)
group_reduction_axes = list(range(1, len(group_shape)))
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
axis = -2 if self.axis == -1 else self.axis - 1
else:
axis = -1 if self.axis == -1 else self.axis - 1
group_reduction_axes.pop(axis)
mean, variance = tf.nn.moments(reshaped_inputs, group_reduction_axes, keepdims=True)
gamma, beta = self._get_reshaped_weights(input_shape)
normalized_inputs = tf.nn.batch_normalization(
reshaped_inputs,
mean=mean,
variance=variance,
scale=gamma,
offset=beta,
variance_epsilon=self.epsilon,
)
return normalized_inputs
def _get_reshaped_weights(self, input_shape):
broadcast_shape = self._create_broadcast_shape(input_shape)
gamma = None
beta = None
if self.scale:
gamma = tf.reshape(self.gamma, broadcast_shape)
if self.center:
beta = tf.reshape(self.beta, broadcast_shape)
return gamma, beta
def _check_if_input_shape_is_none(self, input_shape):
dim = input_shape[self.axis]
if dim is None:
raise ValueError(
"Axis "
+ str(self.axis)
+ " of input tensor should have a defined dimension but the layer received an input with shape "
+ str(input_shape)
+ "."
)
def _set_number_of_groups_for_instance_norm(self, input_shape):
dim = input_shape[self.axis]
if self.groups == -1:
self.groups = dim
def _check_size_of_dimensions(self, input_shape):
dim = input_shape[self.axis]
if dim < self.groups:
raise ValueError(
"Number of groups ("
+ str(self.groups)
+ ") cannot be more than the number of channels ("
+ str(dim)
+ ")."
)
if dim % self.groups != 0:
raise ValueError(
"Number of groups ("
+ str(self.groups)
+ ") must be a multiple of the number of channels ("
+ str(dim)
+ ")."
)
def _check_axis(self):
if self.axis == 0:
raise ValueError(
"You are trying to normalize your batch axis. Do you want to use tf.layer.batch_normalization instead"
)
def _create_input_spec(self, input_shape):
dim = input_shape[self.axis]
self.input_spec = keras.layers.InputSpec(ndim=len(input_shape), axes={self.axis: dim})
def _add_gamma_weight(self, input_shape):
dim = input_shape[self.axis]
shape = (dim,)
if self.scale:
self.gamma = self.add_weight(
shape=shape,
name="gamma",
initializer=self.gamma_initializer,
regularizer=self.gamma_regularizer,
constraint=self.gamma_constraint,
)
else:
self.gamma = None
def _add_beta_weight(self, input_shape):
dim = input_shape[self.axis]
shape = (dim,)
if self.center:
self.beta = self.add_weight(
shape=shape,
name="beta",
initializer=self.beta_initializer,
regularizer=self.beta_regularizer,
constraint=self.beta_constraint,
)
else:
self.beta = None
def _create_broadcast_shape(self, input_shape):
broadcast_shape = [1] * len(input_shape)
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
broadcast_shape[self.axis] = input_shape[self.axis] // self.groups
broadcast_shape.insert(self.axis, self.groups)
else:
broadcast_shape[self.axis] = self.groups
return broadcast_shape
class TFWav2Vec2WeightNormConv1D(keras.layers.Conv1D):
"""Adapted from https://www.tensorflow.org/probability/api_docs/python/tfp/layers/weight_norm/WeightNorm"""
def __init__(self, filters, kernel_size, groups, explicit_padding, **kwargs):
super().__init__(
filters=filters,
kernel_size=kernel_size,
groups=groups,
padding="valid",
use_bias=True,
bias_initializer="he_normal",
**kwargs,
)
self.explicit_padding = explicit_padding
self.filter_axis = 2
self.kernel_norm_axes = tf.constant([0, 1])
def _init_norm(self):
"""Set the norm of the weight vector."""
kernel_norm = tf.sqrt(tf.reduce_sum(tf.square(self.weight_v), axis=self.kernel_norm_axes))
self.weight_g.assign(kernel_norm[:, tf.newaxis, tf.newaxis])
def _normalize_kernel(self):
"""Generate normalized weights."""
kernel = tf.nn.l2_normalize(self.weight_v, axis=self.kernel_norm_axes) * tf.transpose(self.weight_g)
self.kernel = tf.transpose(kernel)
def build(self, input_shape):
if not self.built:
super().build(input_shape)
self.kernel = tf.Variable(tf.transpose(self.kernel), name="weight_v", trainable=True)
self.weight_v = self.kernel
self.weight_g = self.add_weight(
name="weight_g",
shape=(int(self.weight_v.shape[self.filter_axis]), 1, 1),
initializer="ones",
dtype=self.weight_v.dtype,
trainable=True,
)
self._init_norm()
self.bias = self.add_weight(name="bias", shape=(self.filters,), initializer="zeros", trainable=True)
def call(self, inputs):
# TODO Matt: Assigning to attributes in call() is deeply sinful in TensorFlow, as it should be idempotent.
# This whole layer should be replaced by a layer that doesn't inherit from Conv1D, but instead calls
# a functional 1d convolution with normalized weights that it generates (but does not store!)
self._normalize_kernel()
padded_inputs = tf.pad(inputs, ((0, 0), (self.explicit_padding, self.explicit_padding), (0, 0)))
output = super().call(padded_inputs)
return output
class TFWav2Vec2NoLayerNormConvLayer(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, layer_id: int = 0, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.in_conv_dim = config.conv_dim[layer_id] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = keras.layers.Conv1D(
filters=self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
strides=config.conv_stride[layer_id],
use_bias=config.conv_bias,
name="conv",
)
self.activation = get_tf_activation(config.feat_extract_activation)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.in_conv_dim])
class TFWav2Vec2LayerNormConvLayer(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, layer_id: int = 0, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.in_conv_dim = config.conv_dim[layer_id] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = keras.layers.Conv1D(
filters=self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
strides=config.conv_stride[layer_id],
use_bias=config.conv_bias,
name="conv",
)
self.layer_norm = keras.layers.LayerNormalization(name="layer_norm", epsilon=config.layer_norm_eps)
self.activation = get_tf_activation(config.feat_extract_activation)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.in_conv_dim])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.out_conv_dim])
class TFWav2Vec2GroupNormConvLayer(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, layer_id: int = 0, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.in_conv_dim = config.conv_dim[layer_id] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = keras.layers.Conv1D(
filters=self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
strides=config.conv_stride[layer_id],
use_bias=config.conv_bias,
name="conv",
)
self.activation = get_tf_activation(config.feat_extract_activation)
self.layer_norm = TFWav2Vec2GroupNorm(
groups=self.out_conv_dim, epsilon=config.layer_norm_eps, name="layer_norm"
)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.in_conv_dim])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.out_conv_dim])
class TFWav2Vec2PositionalConvEmbedding(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.conv = TFWav2Vec2WeightNormConv1D(
filters=config.hidden_size,
kernel_size=config.num_conv_pos_embeddings,
groups=config.num_conv_pos_embedding_groups,
explicit_padding=config.num_conv_pos_embeddings // 2,
name="conv",
)
self.padding = TFWav2Vec2SamePadLayer(config.num_conv_pos_embeddings)
self.activation = get_tf_activation(config.feat_extract_activation)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.padding(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.config.hidden_size])
class TFWav2Vec2SamePadLayer(keras.layers.Layer):
def __init__(self, num_conv_pos_embeddings, **kwargs):
super().__init__(**kwargs)
self.num_pad_remove = 1 if num_conv_pos_embeddings % 2 == 0 else 0
def call(self, hidden_states):
if self.num_pad_remove > 0:
hidden_states = hidden_states[:, : -self.num_pad_remove, :]
return hidden_states
class TFWav2Vec2FeatureEncoder(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs: Any) -> None:
super().__init__(**kwargs)
if config.feat_extract_norm == "group":
conv_layers = [TFWav2Vec2GroupNormConvLayer(config, layer_id=0, name=f"conv_layers.{0}")] + [
TFWav2Vec2NoLayerNormConvLayer(config, layer_id=i + 1, name=f"conv_layers.{i+1}")
for i in range(config.num_feat_extract_layers - 1)
]
elif config.feat_extract_norm == "layer":
conv_layers = [
TFWav2Vec2LayerNormConvLayer(config, layer_id=i, name=f"conv_layers.{i}")
for i in range(config.num_feat_extract_layers)
]
else:
raise ValueError(
f"`config.feat_extract_norm` is {config.feat_extract_norm}, but has to be one of ['group', 'layer']"
)
self.conv_layers = conv_layers
def call(self, input_values):
hidden_states = tf.expand_dims(input_values, -1)
for conv_layer in self.conv_layers:
hidden_states = conv_layer(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv_layers", None) is not None:
for conv_layer in self.conv_layers:
with tf.name_scope(conv_layer.name):
conv_layer.build(None)
class TFWav2Vec2FeatureExtractor(TFWav2Vec2FeatureEncoder):
def __init__(self, config, **kwargs):
super().__init__(config, **kwargs)
warnings.warn(
f"The class `{self.__class__.__name__}` has been depreciated "
"and will be removed in Transformers v5. "
f"Use `{self.__class__.__bases__[0].__name__}` instead.",
FutureWarning,
)
class TFWav2Vec2FeatureProjection(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs):
super().__init__(**kwargs)
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.projection = keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
bias_initializer="zeros",
name="projection",
)
self.dropout = keras.layers.Dropout(rate=config.feat_proj_dropout)
self.config = config
def call(self, hidden_states: tf.Tensor, training: bool = False) -> tf.Tensor:
norm_hidden_states = self.layer_norm(hidden_states)
hidden_states = self.projection(norm_hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
return hidden_states, norm_hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.conv_dim[-1]])
if getattr(self, "projection", None) is not None:
with tf.name_scope(self.projection.name):
self.projection.build([None, None, self.config.conv_dim[-1]])
# Copied from transformers.models.bart.modeling_tf_bart.TFBartAttention with TFBart->TFWav2Vec2
class TFWav2Vec2Attention(keras.layers.Layer):
"""Multi-headed attention from "Attention Is All You Need"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = keras.layers.Dropout(dropout)
self.head_dim = embed_dim // num_heads
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="k_proj")
self.q_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="q_proj")
self.v_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="v_proj")
self.out_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="out_proj")
def _shape(self, tensor: tf.Tensor, seq_len: int, bsz: int):
return tf.transpose(tf.reshape(tensor, (bsz, seq_len, self.num_heads, self.head_dim)), (0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
key_value_states: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
attention_mask: tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Tuple[tf.Tensor, tf.Tensor | None]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, embed_dim = shape_list(hidden_states)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = tf.concat([past_key_value[0], key_states], axis=2)
value_states = tf.concat([past_key_value[1], value_states], axis=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = tf.reshape(self._shape(query_states, tgt_len, bsz), proj_shape)
key_states = tf.reshape(key_states, proj_shape)
value_states = tf.reshape(value_states, proj_shape)
src_len = shape_list(key_states)[1]
attn_weights = tf.matmul(query_states, key_states, transpose_b=True)
tf.debugging.assert_equal(
shape_list(attn_weights),
[bsz * self.num_heads, tgt_len, src_len],
message=(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {shape_list(attn_weights)}"
),
)
if attention_mask is not None:
tf.debugging.assert_equal(
shape_list(attention_mask),
[bsz, 1, tgt_len, src_len],
message=(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is"
f" {shape_list(attention_mask)}"
),
)
attention_mask = tf.cast(attention_mask, dtype=attn_weights.dtype)
attn_weights = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len)) + attention_mask
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_weights = stable_softmax(attn_weights, axis=-1)
if layer_head_mask is not None:
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=(
f"Head mask for a single layer should be of size {(self.num_heads)}, but is"
f" {shape_list(layer_head_mask)}"
),
)
attn_weights = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
attn_weights, (bsz, self.num_heads, tgt_len, src_len)
)
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_probs = self.dropout(attn_weights, training=training)
attn_output = tf.matmul(attn_probs, value_states)
tf.debugging.assert_equal(
shape_list(attn_output),
[bsz * self.num_heads, tgt_len, self.head_dim],
message=(
f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is"
f" {shape_list(attn_output)}"
),
)
attn_output = tf.transpose(
tf.reshape(attn_output, (bsz, self.num_heads, tgt_len, self.head_dim)), (0, 2, 1, 3)
)
attn_output = tf.reshape(attn_output, (bsz, tgt_len, embed_dim))
attn_output = self.out_proj(attn_output)
attn_weights: tf.Tensor = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len))
return attn_output, attn_weights, past_key_value
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "k_proj", None) is not None:
with tf.name_scope(self.k_proj.name):
self.k_proj.build([None, None, self.embed_dim])
if getattr(self, "q_proj", None) is not None:
with tf.name_scope(self.q_proj.name):
self.q_proj.build([None, None, self.embed_dim])
if getattr(self, "v_proj", None) is not None:
with tf.name_scope(self.v_proj.name):
self.v_proj.build([None, None, self.embed_dim])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.embed_dim])
class TFWav2Vec2FeedForward(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs):
super().__init__(**kwargs)
self.intermediate_dropout = keras.layers.Dropout(config.activation_dropout)
self.intermediate_dense = keras.layers.Dense(
units=config.intermediate_size,
kernel_initializer=get_initializer(config.initializer_range),
bias_initializer="zeros",
name="intermediate_dense",
)
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
self.output_dense = keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
bias_initializer="zeros",
name="output_dense",
)
self.output_dropout = keras.layers.Dropout(config.hidden_dropout)
self.config = config
def call(self, hidden_states: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.intermediate_dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
hidden_states = self.intermediate_dropout(hidden_states, training=training)
hidden_states = self.output_dense(hidden_states)
hidden_states = self.output_dropout(hidden_states, training=training)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "intermediate_dense", None) is not None:
with tf.name_scope(self.intermediate_dense.name):
self.intermediate_dense.build([None, None, self.config.hidden_size])
if getattr(self, "output_dense", None) is not None:
with tf.name_scope(self.output_dense.name):
self.output_dense.build([None, None, self.config.intermediate_size])
class TFWav2Vec2EncoderLayer(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs):
super().__init__(**kwargs)
self.attention = TFWav2Vec2Attention(
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
name="attention",
)
self.dropout = keras.layers.Dropout(config.hidden_dropout)
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.feed_forward = TFWav2Vec2FeedForward(config, name="feed_forward")
self.final_layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="final_layer_norm")
self.config = config
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
attn_residual = hidden_states
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, training=training
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = attn_residual + hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states = hidden_states + self.feed_forward(hidden_states)
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "feed_forward", None) is not None:
with tf.name_scope(self.feed_forward.name):
self.feed_forward.build(None)
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.config.hidden_size])
class TFWav2Vec2EncoderLayerStableLayerNorm(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs):
super().__init__(**kwargs)
self.attention = TFWav2Vec2Attention(
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
name="attention",
)
self.dropout = keras.layers.Dropout(config.hidden_dropout)
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.feed_forward = TFWav2Vec2FeedForward(config, name="feed_forward")
self.final_layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="final_layer_norm")
self.config = config
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
attn_residual = hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, training=training
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = attn_residual + hidden_states
hidden_states = hidden_states + self.feed_forward(self.final_layer_norm(hidden_states))
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "feed_forward", None) is not None:
with tf.name_scope(self.feed_forward.name):
self.feed_forward.build(None)
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.config.hidden_size])
class TFWav2Vec2Encoder(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.pos_conv_embed = TFWav2Vec2PositionalConvEmbedding(config, name="pos_conv_embed")
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.dropout = keras.layers.Dropout(config.hidden_dropout)
self.layer = [TFWav2Vec2EncoderLayer(config, name=f"layers.{i}") for i in range(config.num_hidden_layers)]
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
hidden_states = hidden_states * tf.expand_dims(attention_mask, -1)
attention_mask = _expand_mask(attention_mask)
else:
attention_mask = None
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = np.random.uniform(0, 1)
if training and (dropout_probability < self.config.layerdrop): # skip the layer
continue
layer_outputs = layer_module(
hidden_states=hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "pos_conv_embed", None) is not None:
with tf.name_scope(self.pos_conv_embed.name):
self.pos_conv_embed.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
class TFWav2Vec2EncoderStableLayerNorm(keras.layers.Layer):
def __init__(self, config: Wav2Vec2Config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.pos_conv_embed = TFWav2Vec2PositionalConvEmbedding(config, name="pos_conv_embed")
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.dropout = keras.layers.Dropout(config.hidden_dropout)
self.layer = [
TFWav2Vec2EncoderLayerStableLayerNorm(config, name=f"layers.{i}") for i in range(config.num_hidden_layers)
]
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
hidden_states = hidden_states * tf.expand_dims(attention_mask, -1)
attention_mask = _expand_mask(attention_mask)
else:
attention_mask = None
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.dropout(hidden_states, training=training)
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = np.random.uniform(0, 1)
if training and (dropout_probability < self.config.layerdrop): # skip the layer
continue
layer_outputs = layer_module(
hidden_states=hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
hidden_states = self.layer_norm(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "pos_conv_embed", None) is not None:
with tf.name_scope(self.pos_conv_embed.name):
self.pos_conv_embed.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
class TFWav2Vec2MainLayer(keras.layers.Layer):
config_class = Wav2Vec2Config
def __init__(self, config: Wav2Vec2Config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.feature_extractor = TFWav2Vec2FeatureEncoder(config, name="feature_extractor")
self.feature_projection = TFWav2Vec2FeatureProjection(config, name="feature_projection")
if config.do_stable_layer_norm:
self.encoder = TFWav2Vec2EncoderStableLayerNorm(config, name="encoder")
else:
self.encoder = TFWav2Vec2Encoder(config, name="encoder")
def build(self, input_shape=None):
if self.built:
return
self.built = True
if self.config.mask_time_prob > 0.0 or self.config.mask_feature_prob > 0.0:
self.masked_spec_embed = self.add_weight(
shape=(self.config.hidden_size,), initializer="uniform", trainable=True, name="masked_spec_embed"
)
if getattr(self, "feature_extractor", None) is not None:
with tf.name_scope(self.feature_extractor.name):
self.feature_extractor.build(None)
if getattr(self, "feature_projection", None) is not None:
with tf.name_scope(self.feature_projection.name):
self.feature_projection.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
def _get_feat_extract_output_lengths(self, input_lengths: tf.Tensor):
"""
Computes the output length of the convolutional layers
"""
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return (input_length - kernel_size) // stride + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
return input_lengths
def _mask_hidden_states(self, hidden_states: tf.Tensor, mask_time_indices: tf.Tensor | None = None):
"""
Masks extracted features along time axis and/or along feature axis according to
[SpecAugment](https://arxiv.org/abs/1904.08779).
"""
batch_size, sequence_length, hidden_size = shape_list(hidden_states)
# `config.apply_spec_augment` can set masking to False
if not getattr(self.config, "apply_spec_augment", True):
return hidden_states
if mask_time_indices is not None:
# apply SpecAugment along time axis with given mask_time_indices
hidden_states = tf.where(
tf.cast(mask_time_indices[:, :, tf.newaxis], tf.bool),
self.masked_spec_embed[tf.newaxis, tf.newaxis, :],
hidden_states,
)
elif self.config.mask_time_prob > 0:
# generate indices & apply SpecAugment along time axis
mask_time_indices = _compute_mask_indices(
(batch_size, sequence_length),
mask_prob=self.config.mask_time_prob,
mask_length=self.config.mask_time_length,
min_masks=2,
)
hidden_states = tf.where(
tf.cast(mask_time_indices[:, :, tf.newaxis], tf.bool),
self.masked_spec_embed[tf.newaxis, tf.newaxis, :],
hidden_states,
)
# apply SpecAugment along feature axis
if self.config.mask_feature_prob > 0:
mask_feature_indices = _compute_mask_indices(
(batch_size, hidden_size),
mask_prob=self.config.mask_feature_prob,
mask_length=self.config.mask_feature_length,
)
hidden_states = tf.where(mask_feature_indices[:, tf.newaxis, :], hidden_states, 0)
return hidden_states
@unpack_inputs
def call(
self,
input_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
token_type_ids: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
**kwargs: Any,
):
extract_features = self.feature_extractor(tf.cast(input_values, tf.float32), training=training)
# extract_features = tf.transpose(extract_features, perm=(0, 2, 1))
if attention_mask is not None:
# compute real output lengths according to convolution formula
output_lengths = self._get_feat_extract_output_lengths(tf.reduce_sum(attention_mask, -1))
attention_mask = tf.sequence_mask(
output_lengths, maxlen=shape_list(extract_features)[1], dtype=extract_features.dtype
)
hidden_states, extract_features = self.feature_projection(extract_features, training=training)
mask_time_indices = kwargs.get("mask_time_indices", None)
if training:
hidden_states = self._mask_hidden_states(hidden_states, mask_time_indices=mask_time_indices)
encoder_outputs = self.encoder(
hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = encoder_outputs[0]
if not return_dict:
return (hidden_states, extract_features) + encoder_outputs[1:]
return TFWav2Vec2BaseModelOutput(
last_hidden_state=hidden_states,
extract_features=extract_features,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class TFWav2Vec2PreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = Wav2Vec2Config
base_model_prefix = "wav2vec2"
main_input_name = "input_values"
@property
def input_signature(self):
return {
"input_values": tf.TensorSpec((None, None), tf.float32, name="input_values"),
"attention_mask": tf.TensorSpec((None, None), tf.float32, name="attention_mask"),
}
@property
def dummy_inputs(self):
return {
"input_values": tf.random.uniform(shape=(1, 500), dtype=tf.float32),
"attention_mask": tf.ones(shape=(1, 500), dtype=tf.float32),
}
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
logger.warning(
f"\n{self.__class__.__name__} has backpropagation operations that are NOT supported on CPU. If you wish "
"to train/fine-tune this model, you need a GPU or a TPU"
)
def _get_feat_extract_output_lengths(self, input_lengths, add_adapter=None):
"""
Computes the output length of the convolutional layers
"""
add_adapter = self.config.add_adapter if add_adapter is None else add_adapter
def _conv_out_length(input_length, kernel_size, stride):
return tf.math.floordiv(input_length - kernel_size, stride) + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
if add_adapter:
for _ in range(self.config.num_adapter_layers):
input_lengths = _conv_out_length(input_lengths, 1, self.config.adapter_stride)
return input_lengths
def _get_feature_vector_attention_mask(
self, feature_vector_length: int, attention_mask: tf.Tensor, add_adapter=None
):
non_padded_lengths = tf.math.cumsum(attention_mask, axis=-1)[:, -1]
output_lengths = self._get_feat_extract_output_lengths(non_padded_lengths, add_adapter=add_adapter)
output_lengths = tf.cast(output_lengths, tf.int32)
batch_size = tf.shape(attention_mask)[0]
# check device here
attention_mask = tf.zeros(
(batch_size, feature_vector_length), dtype=attention_mask.dtype, name="attention_mask"
) # these two operations makes sure that all values before the output lengths idxs are attended to
## check device
attention_mask = tf.tensor_scatter_nd_update(
attention_mask,
indices=tf.stack([tf.range(batch_size), output_lengths - 1], axis=1),
updates=tf.ones([batch_size], dtype=attention_mask.dtype),
)
attention_mask = tf.reverse(attention_mask, axis=[-1])
attention_mask = tf.cumsum(attention_mask, axis=-1)
attention_mask = tf.reverse(attention_mask, axis=[-1])
attention_mask = tf.cast(attention_mask, tf.bool)
return attention_mask
WAV_2_VEC_2_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_values` only and nothing else: `model(input_values)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_values, attention_mask])` or `model([input_values, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_values": input_values, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Args:
config ([`Wav2Vec2Config`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
WAV_2_VEC_2_INPUTS_DOCSTRING = r"""
Args:
input_values (`np.ndarray`, `tf.Tensor`, `List[tf.Tensor]` `Dict[str, tf.Tensor]` or `Dict[str, np.ndarray]` and each example must have the shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`np.ndarray` or `tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`np.ndarray` or `tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_values` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_values` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False``):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare TFWav2Vec2 Model transformer outputing raw hidden-states without any specific head on top.",
WAV_2_VEC_2_START_DOCSTRING,
)
class TFWav2Vec2Model(TFWav2Vec2PreTrainedModel):
def __init__(self, config: Wav2Vec2Config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.config = config
self.wav2vec2 = TFWav2Vec2MainLayer(config, name="wav2vec2")
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBaseModelOutput, config_class=_CONFIG_FOR_DOC)
@unpack_inputs
def call(
self,
input_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
token_type_ids: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
"""
Returns:
Example:
```python
>>> from transformers import AutoProcessor, TFWav2Vec2Model
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> processor = AutoProcessor.from_pretrained("facebook/wav2vec2-base-960h")
>>> model = TFWav2Vec2Model.from_pretrained("facebook/wav2vec2-base-960h")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = processor(ds["speech"][0], return_tensors="tf").input_values # Batch size 1
>>> hidden_states = model(input_values).last_hidden_state
```"""
output_hidden_states = output_hidden_states if output_hidden_states else self.config.output_hidden_states
output_attentions = output_attentions if output_attentions else self.config.output_attentions
return_dict = return_dict if return_dict else self.config.return_dict
outputs = self.wav2vec2(
input_values=input_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "wav2vec2", None) is not None:
with tf.name_scope(self.wav2vec2.name):
self.wav2vec2.build(None)
@add_start_docstrings(
"""TFWav2Vec2 Model with a `language modeling` head on top for Connectionist Temporal Classification (CTC).""",
WAV_2_VEC_2_START_DOCSTRING,
)
class TFWav2Vec2ForCTC(TFWav2Vec2PreTrainedModel):
def __init__(self, config: Wav2Vec2Config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.wav2vec2 = TFWav2Vec2MainLayer(config, name="wav2vec2")
self.dropout = keras.layers.Dropout(config.final_dropout)
self.lm_head = keras.layers.Dense(config.vocab_size, name="lm_head")
self.output_hidden_size = (
config.output_hidden_size if hasattr(config, "add_adapter") and config.add_adapter else config.hidden_size
)
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.wav2vec2.feature_extractor.trainable = False
@unpack_inputs
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFCausalLMOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
token_type_ids: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
labels: tf.Tensor | None = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFCausalLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_values` docstring) Tokens with indices set to `-100` are ignored (masked),
the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
Returns:
Example:
```python
>>> import tensorflow as tf
>>> from transformers import AutoProcessor, TFWav2Vec2ForCTC
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> processor = AutoProcessor.from_pretrained("facebook/wav2vec2-base-960h")
>>> model = TFWav2Vec2ForCTC.from_pretrained("facebook/wav2vec2-base-960h")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = processor(ds["speech"][0], return_tensors="tf").input_values # Batch size 1
>>> logits = model(input_values).logits
>>> predicted_ids = tf.argmax(logits, axis=-1)
>>> transcription = processor.decode(predicted_ids[0])
>>> # compute loss
>>> target_transcription = "A MAN SAID TO THE UNIVERSE SIR I EXIST"
>>> # Pass transcription as `text` to encode labels
>>> labels = processor(text=transcription, return_tensors="tf").input_ids
>>> loss = model(input_values, labels=labels).loss
```"""
if labels is not None and tf.reduce_max(labels) >= self.config.vocab_size:
raise ValueError(f"Label values must be <= vocab_size: {self.config.vocab_size}")
outputs = self.wav2vec2(
input_values=input_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states, training=training)
logits = self.lm_head(hidden_states)
if labels is not None:
attention_mask = (
attention_mask if attention_mask is not None else tf.ones_like(input_values, dtype=tf.float32)
)
input_lengths = self.wav2vec2._get_feat_extract_output_lengths(tf.reduce_sum(attention_mask, axis=-1))
# assuming that padded tokens are filled with -100
# when not being attended to
labels_mask = tf.cast(labels >= 0, tf.int32)
target_lengths = tf.reduce_sum(labels_mask, axis=-1)
loss = tf.nn.ctc_loss(
logits=logits,
labels=labels,
logit_length=input_lengths,
label_length=target_lengths,
blank_index=self.config.pad_token_id,
logits_time_major=False,
)
if self.config.ctc_loss_reduction == "sum":
loss = tf.reduce_sum(loss)
if self.config.ctc_loss_reduction == "mean":
loss = tf.reduce_mean(loss)
loss = tf.reshape(loss, (1,))
else:
loss = None
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "wav2vec2", None) is not None:
with tf.name_scope(self.wav2vec2.name):
self.wav2vec2.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build([None, None, self.output_hidden_size])
class TFWav2Vec2ForSequenceClassification(TFWav2Vec2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.wav2vec2 = TFWav2Vec2MainLayer(config, name="wav2vec2")
self.num_layers = config.num_hidden_layers + 1
with tf.name_scope(self._name_scope()):
if config.use_weighted_layer_sum:
self.layer_weights = self.add_weight(
shape=(self.num_layers,), initializer="ones", trainable=True, name="layer_weights"
)
self.config = config
self.projector = keras.layers.Dense(units=config.classifier_proj_size, name="projector")
self.classifier = keras.layers.Dense(units=config.num_labels, activation=None, name="classifier")
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.wav2vec2.feature_extractor.trainable = False
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for layer in self.wav2vec2.layers:
layer.trainable = False
@unpack_inputs
def call(
self,
input_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: bool | None = None,
output_hidden_states: bool | None = None,
return_dict: bool | None = None,
labels: tf.Tensor | None = None,
training: bool = False,
) -> TFSequenceClassifierOutput | Tuple[tf.Tensor]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = True if self.config.use_weighted_layer_sum else output_hidden_states
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
if self.config.use_weighted_layer_sum:
hidden_states = outputs[_HIDDEN_STATES_START_POSITION]
hidden_states = tf.stack(hidden_states, axis=1)
norm_weights = tf.nn.softmax(self.layer_weights, axis=-1)
hidden_states = tf.reduce_sum(hidden_states * tf.reshape(norm_weights, [-1, 1, 1]), axis=1)
else:
hidden_states = outputs[0]
hidden_states = self.projector(hidden_states)
if attention_mask is None:
pooled_output = tf.reduce_mean(hidden_states, axis=1)
else:
padding_mask = self._get_feature_vector_attention_mask(shape_list(hidden_states)[1], attention_mask)
padding_mask_float = tf.cast(padding_mask, hidden_states.dtype)
hidden_states = tf.multiply(hidden_states, tf.expand_dims(padding_mask_float, axis=-1))
pooled_output = tf.divide(
tf.reduce_sum(hidden_states, axis=1), tf.expand_dims(tf.reduce_sum(padding_mask_float, axis=1), axis=1)
)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
loss_fn = keras.losses.SparseCategoricalCrossentropy(from_logits=True)
loss = loss_fn(tf.reshape(labels, [-1]), tf.reshape(logits, [-1, self.config.num_labels]))
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "wav2vec2", None) is not None:
with tf.name_scope(self.wav2vec2.name):
self.wav2vec2.build(None)
if getattr(self, "projector", None) is not None:
with tf.name_scope(self.projector.name):
self.projector.build([None, None, self.config.hidden_size])
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.classifier_proj_size])
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/modeling_flax_wav2vec2.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Flax Wav2Vec2 model."""
from functools import partial
from typing import Optional, Tuple, Union
import flax
import flax.linen as nn
import jax
import jax.numpy as jnp
import numpy as np
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import FlaxBaseModelOutput, FlaxCausalLMOutput
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import ModelOutput, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_wav2vec2 import Wav2Vec2Config
logger = logging.get_logger(__name__)
@flax.struct.dataclass
class FlaxWav2Vec2BaseModelOutput(ModelOutput):
"""
Output type of [`FlaxWav2Vec2BaseModelOutput`], with potential hidden states and attentions.
Args:
last_hidden_state (`jnp.ndarray` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
extract_features (`jnp.ndarray` of shape `(batch_size, sequence_length, last_conv_dim)`):
Sequence of extracted feature vectors of the last convolutional layer of the model with `last_conv_dim`
being the dimension of the last convolutional layer.
hidden_states (`tuple(jnp.ndarray)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `jnp.ndarray` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(jnp.ndarray)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `jnp.ndarray` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
last_hidden_state: jnp.ndarray = None
extract_features: jnp.ndarray = None
hidden_states: Optional[Tuple[jnp.ndarray]] = None
attentions: Optional[Tuple[jnp.ndarray]] = None
@flax.struct.dataclass
class FlaxWav2Vec2ForPreTrainingOutput(ModelOutput):
"""
Output type of [`FlaxWav2Vec2ForPreTrainingOutput`], with potential hidden states and attentions.
Args:
loss (*optional*, returned when model is in train mode, `jnp.ndarray` of shape `(1,)`):
Total loss as the sum of the contrastive loss (L_m) and the diversity loss (L_d) as stated in the [official
paper](https://arxiv.org/pdf/2006.11477.pdf) . (classification) loss.
projected_states (`jnp.ndarray` of shape `(batch_size, sequence_length, config.proj_codevector_dim)`):
Hidden-states of the model projected to *config.proj_codevector_dim* that can be used to predict the masked
projected quantized states.
projected_quantized_states (`jnp.ndarray` of shape `(batch_size, sequence_length, config.proj_codevector_dim)`):
Quantized extracted feature vectors projected to *config.proj_codevector_dim* representing the positive
target vectors for contrastive loss.
hidden_states (`tuple(jnp.ndarray)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `jnp.ndarray` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(jnp.ndarray)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `jnp.ndarray` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
projected_states: jnp.ndarray = None
projected_quantized_states: jnp.ndarray = None
codevector_perplexity: jnp.ndarray = None
hidden_states: Optional[Tuple[jnp.ndarray]] = None
attentions: Optional[Tuple[jnp.ndarray]] = None
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[np.ndarray] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: the shape for which to compute masks.
should be of size 2 where first element is batch size and 2nd is timesteps
mask_prob:
probability for each token to be chosen as start of the span to be masked. this will be multiplied by
number of timesteps divided by length of mask span to mask approximately this percentage of all elements.
however due to overlaps, the actual number will be smaller (unless no_overlap is True)
mask_length: size of the mask
min_masks: minimum number of masked spans
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length} and"
f" `sequence_length`: {sequence_length}`"
)
# compute number of masked spans in batch
num_masked_spans = int(mask_prob * sequence_length / mask_length + np.random.rand(1).item())
num_masked_spans = max(num_masked_spans, min_masks)
# make sure num masked indices <= sequence_length
if num_masked_spans * mask_length > sequence_length:
num_masked_spans = sequence_length // mask_length
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
# get random indices to mask
spec_aug_mask_idxs = np.array(
[
np.random.choice(np.arange(sequence_length - (mask_length - 1)), num_masked_spans, replace=False)
for _ in range(batch_size)
]
)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(spec_aug_mask_idxs[:, :, None], (batch_size, num_masked_spans, mask_length))
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, num_masked_spans * mask_length)
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, num_masked_spans, mask_length)).reshape(
batch_size, num_masked_spans * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
if attention_mask is not None:
# make sure padded input ids cannot be masked
spec_aug_mask = np.where(attention_mask, spec_aug_mask, False)
return spec_aug_mask
def _sample_negative_indices(features_shape: Tuple, num_negatives: int, attention_mask: Optional[np.ndarray] = None):
"""
Sample `num_negatives` vectors from feature vectors.
"""
batch_size, sequence_length, hidden_size = features_shape
if sequence_length <= 1:
raise ValueError(
"`features should have `sequence_length` > 1, but are of shape "
f"(batch_size, sequence_length, hidden_size) = ({batch_size, sequence_length, hidden_size})."
)
# get `num_negatives` random vector indices from the same utterance
sampled_negative_indices = []
for batch_idx in range(batch_size):
high = attention_mask[batch_idx].sum() - 1 if attention_mask is not None else sequence_length - 1
sampled_indices_slice = np.random.randint(0, high, size=(num_negatives * sequence_length,))
sampled_negative_indices.append(sampled_indices_slice)
sampled_negative_indices = np.asarray(sampled_negative_indices, dtype=np.int32)
# generate indices of the positive vectors themselves, repeat them `num_negatives` times
feature_indices = np.broadcast_to(np.arange(sequence_length)[:, None], (sequence_length, num_negatives)).flatten()
# avoid sampling the same positive vector, but keep the distribution uniform
sampled_negative_indices[sampled_negative_indices >= feature_indices] += 1
# correct for batch size
for batch_idx in range(1, batch_size):
sampled_negative_indices[batch_idx] += batch_idx * sequence_length
return sampled_negative_indices
WAV_2_VEC_2_START_DOCSTRING = r"""
Wav2Vec2 was proposed in [wav2vec 2.0: A Framework for Self-Supervised Learning of Speech
Representations](https://arxiv.org/abs/2006.11477) by Alexei Baevski, Henry Zhou, Abdelrahman Mohamed, Michael
Auli.
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen
[flax.nn.Module](https://flax.readthedocs.io/en/latest/_autosummary/flax.nn.module.html) subclass. Use it as a
regular Flax Module and refer to the Flax documentation for all matter related to general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`Wav2Vec2Config`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
WAV_2_VEC_2_INPUTS_DOCSTRING = r"""
Args:
input_values (`jnp.ndarray` of shape `(batch_size, sequence_length)`):
Float values of input raw speech waveform. Values can be obtained by loading a `.flac` or `.wav` audio file
into an array of type `List[float]` or a `numpy.ndarray`, *e.g.* via the soundfile library (`pip install
soundfile`). To prepare the array into `input_values`, the [`AutoProcessor`] should be used for padding and
conversion into a tensor of type `jnp.ndarray`. See [`Wav2Vec2Processor.__call__`] for details.
attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing convolution and attention on padding token indices. Mask values selected in `[0,
1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask) .. warning:: `attention_mask` should only be passed
if the corresponding processor has `config.return_attention_mask == True`. For all models whose processor
has `config.return_attention_mask == False`, such as
[wav2vec2-base](https://huggingface.co/facebook/wav2vec2-base-960h), `attention_mask` should **not** be
passed to avoid degraded performance when doing batched inference. For such models `input_values` should
simply be padded with 0 and passed without `attention_mask`. Be aware that these models also yield slightly
different results depending on whether `input_values` is padded or not.
mask_time_indices (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices to mask extracted features for contrastive loss. When in training mode, model learns to predict
masked extracted features in *config.proj_codevector_dim* space.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class FlaxWav2Vec2LayerNormConvLayer(nn.Module):
config: Wav2Vec2Config
layer_id: int = 0
dtype: jnp.dtype = jnp.float32
def setup(self):
self.in_conv_dim = self.config.conv_dim[self.layer_id] if self.layer_id > 0 else 1
self.out_conv_dim = self.config.conv_dim[self.layer_id]
self.conv = nn.Conv(
features=self.config.conv_dim[self.layer_id],
kernel_size=(self.config.conv_kernel[self.layer_id],),
strides=(self.config.conv_stride[self.layer_id],),
use_bias=self.config.conv_bias,
kernel_init=jax.nn.initializers.he_normal(),
padding="VALID",
dtype=self.dtype,
)
self.layer_norm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
self.activation = ACT2FN[self.config.feat_extract_activation]
def __call__(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
class FlaxConvWithWeightNorm(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.conv = nn.Conv(
features=self.config.hidden_size,
kernel_size=(self.config.num_conv_pos_embeddings,),
kernel_init=jax.nn.initializers.he_normal(),
padding="VALID",
feature_group_count=self.config.num_conv_pos_embedding_groups,
dtype=self.dtype,
)
weight_shape = (
self.conv.features,
self.conv.features // self.conv.feature_group_count,
self.conv.kernel_size[0],
)
self.weight_v = self.param("weight_v", jax.nn.initializers.he_normal(), weight_shape)
self.weight_g = self.param("weight_g", lambda _: jnp.linalg.norm(self.weight_v, axis=(0, 1))[None, None, :])
self.bias = self.param("bias", jax.nn.initializers.zeros, (self.conv.features,))
self.prev_padding = self.conv.kernel_size[0] // 2
def _get_normed_weights(self):
weight_v_norm = jnp.linalg.norm(self.weight_v, axis=(0, 1))[None, None, :]
normed_weight_v = jnp.divide(self.weight_v, weight_v_norm)
normed_kernel = jnp.multiply(normed_weight_v, self.weight_g)
return normed_kernel
def __call__(self, hidden_states):
kernel = self._get_normed_weights()
hidden_states = jnp.pad(hidden_states, ((0, 0), (self.prev_padding, self.prev_padding), (0, 0)))
hidden_states = self.conv.apply({"params": {"kernel": kernel.T, "bias": self.bias}}, hidden_states)
return hidden_states
class FlaxWav2Vec2PositionalConvEmbedding(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.conv = FlaxConvWithWeightNorm(self.config, dtype=self.dtype)
self.activation = ACT2FN[self.config.feat_extract_activation]
self.num_pad_remove = 1 if self.config.num_conv_pos_embeddings % 2 == 0 else 0
def __call__(self, hidden_states):
hidden_states = hidden_states.transpose((0, 1, 2))
hidden_states = self.conv(hidden_states)
if self.num_pad_remove > 0:
hidden_states = hidden_states[:, : -self.num_pad_remove, :]
hidden_states = self.activation(hidden_states)
hidden_states = hidden_states.transpose((0, 1, 2))
return hidden_states
class FlaxConvLayersCollection(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
if self.config.feat_extract_norm == "layer":
self.layers = [
FlaxWav2Vec2LayerNormConvLayer(self.config, layer_id=i, name=str(i), dtype=self.dtype)
for i in range(self.config.num_feat_extract_layers)
]
elif self.config.feat_extract_norm == "group":
raise NotImplementedError("At the moment only ``config.feat_extact_norm == 'layer'`` is supported")
else:
raise ValueError(
f"`config.feat_extract_norm` is {self.config.feat_extract_norm}, but has to be one of ['group',"
" 'layer']"
)
def __call__(self, hidden_states):
for i, conv_layer in enumerate(self.layers):
hidden_states = conv_layer(hidden_states)
return hidden_states
class FlaxWav2Vec2FeatureEncoder(nn.Module):
"""Construct the features from raw audio waveform"""
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.conv_layers = FlaxConvLayersCollection(self.config, dtype=self.dtype)
def __call__(self, input_values, freeze_feature_encoder=False):
hidden_states = input_values[:, :, None]
hidden_states = self.conv_layers(hidden_states)
if freeze_feature_encoder:
hidden_states = jax.lax.stop_gradient(hidden_states)
return hidden_states
class FlaxWav2Vec2FeatureProjection(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.layer_norm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
self.projection = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.dropout = nn.Dropout(rate=self.config.feat_proj_dropout)
def __call__(self, hidden_states, deterministic=True):
norm_hidden_states = self.layer_norm(hidden_states)
hidden_states = self.projection(norm_hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
return hidden_states, norm_hidden_states
class FlaxWav2Vec2Attention(nn.Module):
config: Wav2Vec2Config
embed_dim: int
num_heads: int
dropout: float = 0.0
bias: bool = True
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self) -> None:
self.head_dim = self.embed_dim // self.num_heads
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {self.num_heads})."
)
dense = partial(
nn.Dense,
self.embed_dim,
use_bias=self.bias,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
)
self.q_proj, self.k_proj, self.v_proj = dense(), dense(), dense()
self.out_proj = dense()
self.dropout_layer = nn.Dropout(rate=self.dropout)
def _split_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.num_heads, self.head_dim))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.embed_dim,))
def __call__(
self,
hidden_states: jnp.ndarray,
key_value_states: Optional[jnp.ndarray] = None,
attention_mask: Optional[jnp.ndarray] = None,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
"""Input shape: Batch x Time x Channel"""
# get query proj
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = self._split_heads(query_states)
key_states = self._split_heads(key_states)
value_states = self._split_heads(value_states)
if attention_mask is not None:
attention_mask = jnp.expand_dims(attention_mask, axis=(-3, -2))
# Convert the boolean attention mask to an attention bias.
if attention_mask is not None:
# attention mask in the form of attention bias
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, jnp.finfo(self.dtype).min).astype(self.dtype),
)
else:
attention_bias = None
dropout_rng = None
if not deterministic and self.dropout > 0.0:
dropout_rng = self.make_rng("dropout")
attn_weights = dot_product_attention_weights(
query_states,
key_states,
bias=attention_bias,
dropout_rng=dropout_rng,
dropout_rate=self.dropout,
broadcast_dropout=True,
deterministic=deterministic,
dtype=self.dtype,
precision=None,
)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value_states)
attn_output = self._merge_heads(attn_output)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights
class FlaxWav2Vec2FeedForward(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.intermediate_dropout = nn.Dropout(rate=self.config.activation_dropout)
self.intermediate_dense = nn.Dense(
self.config.intermediate_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
if isinstance(self.config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[self.config.hidden_act]
else:
self.intermediate_act_fn = self.config.hidden_act
self.output_dense = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.output_dropout = nn.Dropout(rate=self.config.hidden_dropout)
def __call__(self, hidden_states, deterministic=True):
hidden_states = self.intermediate_dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
hidden_states = self.intermediate_dropout(hidden_states, deterministic=deterministic)
hidden_states = self.output_dense(hidden_states)
hidden_states = self.output_dropout(hidden_states, deterministic=deterministic)
return hidden_states
class FlaxWav2Vec2EncoderLayerStableLayerNorm(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.attention = FlaxWav2Vec2Attention(
config=self.config,
embed_dim=self.config.hidden_size,
num_heads=self.config.num_attention_heads,
dropout=self.config.attention_dropout,
dtype=self.dtype,
)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout)
self.layer_norm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
self.feed_forward = FlaxWav2Vec2FeedForward(self.config, dtype=self.dtype)
self.final_layer_norm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
def __call__(self, hidden_states, attention_mask=None, deterministic=True, output_attentions=False):
attn_residual = hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states, attn_weights = self.attention(
hidden_states, attention_mask=attention_mask, deterministic=deterministic
)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
hidden_states = attn_residual + hidden_states
hidden_states = hidden_states + self.feed_forward(
self.final_layer_norm(hidden_states), deterministic=deterministic
)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class FlaxWav2Vec2EncoderLayerStableLayerNormCollection(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.layers = [
FlaxWav2Vec2EncoderLayerStableLayerNorm(self.config, name=str(i), dtype=self.dtype)
for i in range(self.config.num_hidden_layers)
]
def __call__(
self,
hidden_states,
attention_mask=None,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for i, layer in enumerate(self.layers):
if output_hidden_states:
all_hidden_states += (hidden_states,)
layer_outputs = layer(
hidden_states, attention_mask, deterministic=deterministic, output_attentions=output_attentions
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions += (layer_outputs[1],)
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = (hidden_states, all_hidden_states, all_attentions)
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
class FlaxWav2Vec2StableLayerNormEncoder(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.pos_conv_embed = FlaxWav2Vec2PositionalConvEmbedding(self.config, dtype=self.dtype)
self.layer_norm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout)
self.layers = FlaxWav2Vec2EncoderLayerStableLayerNormCollection(self.config, dtype=self.dtype)
def __call__(
self,
hidden_states,
attention_mask=None,
deterministic=True,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
if attention_mask is not None:
# make sure padded tokens are not attended to
hidden_states = jnp.where(
jnp.broadcast_to(attention_mask[:, :, None], hidden_states.shape), hidden_states, 0
)
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
outputs = self.layers(
hidden_states,
attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_state = self.layer_norm(outputs[0])
# update the last element in `hidden_states` after applying `layernorm` above
hidden_states = None
if output_hidden_states:
hidden_states = outputs[1]
hidden_states = hidden_states[:-1] + (last_hidden_state,)
if not return_dict:
outputs = (last_hidden_state, hidden_states) + (outputs[2:] if output_hidden_states else outputs[1:])
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=last_hidden_state, hidden_states=hidden_states, attentions=outputs.attentions
)
class FlaxWav2Vec2GumbelVectorQuantizer(nn.Module):
"""
Vector quantization using gumbel softmax. See [CATEGORICAL REPARAMETERIZATION WITH
GUMBEL-SOFTMAX](https://arxiv.org/pdf/1611.01144.pdf) for more information.
"""
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.num_groups = self.config.num_codevector_groups
self.num_vars = self.config.num_codevectors_per_group
if self.config.codevector_dim % self.num_groups != 0:
raise ValueError(
f"`config.codevector_dim {self.config.codevector_dim} must be divisible by"
f" `config.num_codevector_groups` {self.num_groups} for concatenation"
)
# storage for codebook variables (codewords)
self.codevectors = self.param(
"codevectors",
jax.nn.initializers.uniform(),
(1, self.num_groups * self.num_vars, self.config.codevector_dim // self.num_groups),
)
self.weight_proj = nn.Dense(
self.num_groups * self.num_vars,
kernel_init=jax.nn.initializers.normal(1.0),
dtype=self.dtype,
)
@staticmethod
def _compute_perplexity(probs, mask=None):
if mask is not None:
mask_extended = jnp.broadcast_to(mask.flatten()[:, None, None], probs.shape)
probs = jnp.where(mask_extended, probs, jnp.zeros_like(probs))
marginal_probs = probs.sum(axis=0) / mask.sum()
else:
marginal_probs = probs.mean(axis=0)
perplexity = jnp.exp(-jnp.sum(marginal_probs * jnp.log(marginal_probs + 1e-7), axis=-1)).sum()
return perplexity
def __call__(self, hidden_states, mask_time_indices=None, deterministic=True, temperature=1):
batch_size, sequence_length, hidden_size = hidden_states.shape
# project to codevector dim
hidden_states = self.weight_proj(hidden_states)
hidden_states = hidden_states.reshape(batch_size * sequence_length * self.num_groups, -1)
if not deterministic:
# sample code vector probs via gumbel in differentiateable way
gumbel_rng = self.make_rng("gumbel")
gumbels = jax.random.gumbel(gumbel_rng, hidden_states.shape)
codevector_probs = nn.softmax((hidden_states + gumbels) / temperature)
# compute perplexity
codevector_soft_dist = nn.softmax(
hidden_states.reshape(batch_size * sequence_length, self.num_groups, -1), axis=-1
)
perplexity = self._compute_perplexity(codevector_soft_dist, mask_time_indices)
else:
# take argmax in non-differentiable way
# comptute hard codevector distribution (one hot)
codevector_idx = hidden_states.argmax(axis=-1)
codevector_probs = jax.nn.one_hot(codevector_idx, hidden_states.shape[-1]) * 1.0
codevector_probs = codevector_probs.reshape(batch_size * sequence_length, self.num_groups, -1)
perplexity = self._compute_perplexity(codevector_probs, mask_time_indices)
codevector_probs = codevector_probs.reshape(batch_size * sequence_length, -1)
# use probs to retrieve codevectors
codevectors_per_group = jnp.expand_dims(codevector_probs, axis=-1) * self.codevectors
codevectors = codevectors_per_group.reshape(batch_size * sequence_length, self.num_groups, self.num_vars, -1)
codevectors = codevectors.sum(-2).reshape(batch_size, sequence_length, -1)
return codevectors, perplexity
class FlaxWav2Vec2Adapter(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
# hidden_states require down-projection if feature dims don't match
if self.config.output_hidden_size != self.config.hidden_size:
self.proj = nn.Dense(
self.config.output_hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.proj_layer_norm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
else:
self.proj = self.proj_layer_norm = None
self.layers = FlaxWav2Vec2AdapterLayersCollection(self.config, dtype=self.dtype)
def __call__(self, hidden_states, deterministic=True):
# down-project hidden_states if required
if self.proj is not None and self.proj_layer_norm is not None:
hidden_states = self.proj(hidden_states)
hidden_states = self.proj_layer_norm(hidden_states)
hidden_states = self.layers(hidden_states)
return hidden_states
class FlaxWav2Vec2AdapterLayer(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.conv = nn.Conv(
features=2 * self.config.output_hidden_size,
kernel_size=(self.config.adapter_kernel_size,),
strides=(self.config.adapter_stride,),
padding=((1, 1),),
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
def __call__(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = nn.glu(hidden_states, axis=2)
return hidden_states
class FlaxWav2Vec2AdapterLayersCollection(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.layers = [
FlaxWav2Vec2AdapterLayer(self.config, name=str(i), dtype=self.dtype)
for i in range(self.config.num_adapter_layers)
]
def __call__(self, hidden_states):
for conv_layer in self.layers:
hidden_states = conv_layer(hidden_states)
return hidden_states
class FlaxWav2Vec2PreTrainedModel(FlaxPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = Wav2Vec2Config
base_model_prefix: str = "wav2vec2"
main_input_name = "input_values"
module_class: nn.Module = None
def __init__(
self,
config: Wav2Vec2Config,
input_shape: Tuple = (1, 1024),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_values = jnp.zeros(input_shape, dtype="i4")
attention_mask = jnp.ones_like(input_values)
params_rng, dropout_rng = jax.random.split(rng, 2)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(rngs, input_values, attention_mask, return_dict=False)["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
def __call__(
self,
input_values,
attention_mask=None,
mask_time_indices=None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
freeze_feature_encoder: bool = False,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
batch_size, sequence_length = input_values.shape
if attention_mask is None:
attention_mask = jnp.ones((batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
return self.module.apply(
inputs,
jnp.array(input_values, dtype="f4"),
jnp.array(attention_mask, dtype="i4"),
mask_time_indices,
not train,
output_attentions,
output_hidden_states,
freeze_feature_encoder,
return_dict,
rngs=rngs,
)
def _get_feat_extract_output_lengths(
self, input_lengths: Union[jnp.ndarray, int], add_adapter: Optional[bool] = None
):
return self.module._get_feat_extract_output_lengths(input_lengths, add_adapter=add_adapter)
class FlaxWav2Vec2Module(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.feature_extractor = FlaxWav2Vec2FeatureEncoder(self.config, dtype=self.dtype)
self.feature_projection = FlaxWav2Vec2FeatureProjection(self.config, dtype=self.dtype)
self.masked_spec_embed = self.param(
"masked_spec_embed", jax.nn.initializers.uniform(), (self.config.hidden_size,)
)
if self.config.do_stable_layer_norm:
self.encoder = FlaxWav2Vec2StableLayerNormEncoder(self.config, dtype=self.dtype)
else:
raise NotImplementedError("``config.do_stable_layer_norm is False`` is currently not supported.")
self.adapter = FlaxWav2Vec2Adapter(self.config, dtype=self.dtype) if self.config.add_adapter else None
def __call__(
self,
input_values,
attention_mask=None,
mask_time_indices=None,
deterministic=True,
output_attentions=None,
output_hidden_states=None,
freeze_feature_encoder=False,
return_dict=None,
):
extract_features = self.feature_extractor(input_values, freeze_feature_encoder=freeze_feature_encoder)
# make sure that no loss is computed on padded inputs
if attention_mask is not None:
# compute reduced attention_mask corresponding to feature vectors
attention_mask = self._get_feature_vector_attention_mask(
extract_features.shape[1], attention_mask, add_adapter=False
)
hidden_states, extract_features = self.feature_projection(extract_features, deterministic=deterministic)
if mask_time_indices is not None: # apply SpecAugment along time axis with given indices
hidden_states = jnp.where(
jnp.broadcast_to(mask_time_indices[:, :, None], hidden_states.shape),
jnp.broadcast_to(self.masked_spec_embed[None, None, :], hidden_states.shape),
hidden_states,
)
encoder_outputs = self.encoder(
hidden_states,
attention_mask=attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = encoder_outputs[0]
if self.adapter is not None:
hidden_states = self.adapter(hidden_states)
if not return_dict:
return (hidden_states, extract_features) + encoder_outputs[1:]
return FlaxWav2Vec2BaseModelOutput(
last_hidden_state=hidden_states,
extract_features=extract_features,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
def _get_feat_extract_output_lengths(
self, input_lengths: Union[jnp.ndarray, int], add_adapter: Optional[bool] = None
):
"""
Computes the output length of the convolutional layers
"""
add_adapter = self.config.add_adapter if add_adapter is None else add_adapter
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return (input_length - kernel_size) // stride + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
if add_adapter:
for _ in range(self.config.num_adapter_layers):
input_lengths = _conv_out_length(input_lengths, 1, self.config.adapter_stride)
return input_lengths
def _get_feature_vector_attention_mask(
self, feature_vector_length: int, attention_mask: jnp.ndarray, add_adapter=None
):
# Effectively attention_mask.sum(-1), but not inplace to be able to run
# on inference mode.
non_padded_lengths = attention_mask.cumsum(axis=-1)[:, -1]
output_lengths = self._get_feat_extract_output_lengths(non_padded_lengths, add_adapter=add_adapter)
batch_size = attention_mask.shape[0]
attention_mask = jnp.zeros((batch_size, feature_vector_length), dtype=attention_mask.dtype)
# these two operations makes sure that all values
# before the output lengths indices are attended to
attention_mask = attention_mask.at[jnp.arange(attention_mask.shape[0]), output_lengths - 1].set(1)
attention_mask = jnp.flip(jnp.flip(attention_mask, -1).cumsum(-1), -1).astype("bool")
return attention_mask
@add_start_docstrings(
"The bare Wav2Vec2 Model transformer outputting raw hidden-states without any specific head on top.",
WAV_2_VEC_2_START_DOCSTRING,
)
class FlaxWav2Vec2Model(FlaxWav2Vec2PreTrainedModel):
module_class = FlaxWav2Vec2Module
FLAX_WAV2VEC2_MODEL_DOCSTRING = """
Returns:
Example:
```python
>>> from transformers import AutoProcessor, FlaxWav2Vec2Model
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> processor = AutoProcessor.from_pretrained("facebook/wav2vec2-large-lv60")
>>> model = FlaxWav2Vec2Model.from_pretrained("facebook/wav2vec2-large-lv60")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = processor(
... ds["speech"][0], sampling_rate=16_000, return_tensors="np"
... ).input_values # Batch size 1
>>> hidden_states = model(input_values).last_hidden_state
```
"""
overwrite_call_docstring(
FlaxWav2Vec2Model,
WAV_2_VEC_2_INPUTS_DOCSTRING + FLAX_WAV2VEC2_MODEL_DOCSTRING,
)
append_replace_return_docstrings(
FlaxWav2Vec2Model, output_type=FlaxWav2Vec2BaseModelOutput, config_class=Wav2Vec2Config
)
class FlaxWav2Vec2ForCTCModule(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.wav2vec2 = FlaxWav2Vec2Module(self.config, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.final_dropout)
self.lm_head = nn.Dense(
self.config.vocab_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
def __call__(
self,
input_values,
attention_mask=None,
mask_time_indices=None,
deterministic=True,
output_attentions=None,
output_hidden_states=None,
freeze_feature_encoder=False,
return_dict=None,
):
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
mask_time_indices=mask_time_indices,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
freeze_feature_encoder=freeze_feature_encoder,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
logits = self.lm_head(hidden_states)
if not return_dict:
return (logits,) + outputs[2:]
return FlaxCausalLMOutput(logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions)
def _get_feat_extract_output_lengths(
self,
input_lengths: Union[jnp.ndarray, int],
add_adapter: Optional[bool] = None,
):
"""
Computes the output length of the convolutional layers
"""
add_adapter = self.config.add_adapter if add_adapter is None else add_adapter
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return (input_length - kernel_size) // stride + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
if add_adapter:
for _ in range(self.config.num_adapter_layers):
input_lengths = _conv_out_length(input_lengths, 1, self.config.adapter_stride)
return input_lengths
@add_start_docstrings(
"Wav2Vec2 Model with a `language modeling` head on top for Connectionist Temporal Classification (CTC).",
WAV_2_VEC_2_START_DOCSTRING,
)
class FlaxWav2Vec2ForCTC(FlaxWav2Vec2PreTrainedModel):
module_class = FlaxWav2Vec2ForCTCModule
FLAX_WAV2VEC2_FOR_CTC_DOCSTRING = """
Returns:
Example:
```python
>>> import jax.numpy as jnp
>>> from transformers import AutoProcessor, FlaxWav2Vec2ForCTC
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> processor = AutoProcessor.from_pretrained("facebook/wav2vec2-large-960h-lv60")
>>> model = FlaxWav2Vec2ForCTC.from_pretrained("facebook/wav2vec2-large-960h-lv60")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = processor(
... ds["speech"][0], sampling_rate=16_000, return_tensors="np"
... ).input_values # Batch size 1
>>> logits = model(input_values).logits
>>> predicted_ids = jnp.argmax(logits, axis=-1)
>>> transcription = processor.decode(predicted_ids[0])
>>> # should give: "A MAN SAID TO THE UNIVERSE SIR I EXIST"
```
"""
overwrite_call_docstring(
FlaxWav2Vec2ForCTC,
WAV_2_VEC_2_INPUTS_DOCSTRING + FLAX_WAV2VEC2_FOR_CTC_DOCSTRING,
)
append_replace_return_docstrings(FlaxWav2Vec2ForCTC, output_type=FlaxCausalLMOutput, config_class=Wav2Vec2Config)
class FlaxWav2Vec2ForPreTrainingModule(nn.Module):
config: Wav2Vec2Config
dtype: jnp.dtype = jnp.float32
def setup(self):
self.wav2vec2 = FlaxWav2Vec2Module(self.config, dtype=self.dtype)
self.dropout_features = nn.Dropout(self.config.feat_quantizer_dropout)
self.quantizer = FlaxWav2Vec2GumbelVectorQuantizer(self.config, dtype=self.dtype)
self.project_q = nn.Dense(
self.config.proj_codevector_dim,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.project_hid = nn.Dense(
self.config.proj_codevector_dim,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
def __call__(
self,
input_values,
attention_mask=None,
mask_time_indices=None,
gumbel_temperature: int = 1,
deterministic: bool = True,
output_attentions=None,
output_hidden_states=None,
freeze_feature_encoder=False,
return_dict=None,
):
r"""
Returns:
Example:
```python
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.wav2vec2(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
mask_time_indices=mask_time_indices,
deterministic=deterministic,
freeze_feature_encoder=freeze_feature_encoder,
return_dict=return_dict,
)
# project all transformed features (including masked) to final vq dim
transformer_features = self.project_hid(outputs[0])
# quantize all (unmasked) extracted features and project to final vq dim
extract_features = self.dropout_features(outputs[1], deterministic=deterministic)
quantized_features, codevector_perplexity = self.quantizer(
extract_features, mask_time_indices, deterministic=deterministic, temperature=gumbel_temperature
)
quantized_features = self.project_q(quantized_features)
if not return_dict:
return (transformer_features, quantized_features, codevector_perplexity) + outputs[2:]
return FlaxWav2Vec2ForPreTrainingOutput(
projected_states=transformer_features,
projected_quantized_states=quantized_features,
codevector_perplexity=codevector_perplexity,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def _get_feat_extract_output_lengths(
self, input_lengths: Union[jnp.ndarray, int], add_adapter: Optional[bool] = None
):
"""
Computes the output length of the convolutional layers
"""
add_adapter = self.config.add_adapter if add_adapter is None else add_adapter
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return (input_length - kernel_size) // stride + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
if add_adapter:
for _ in range(self.config.num_adapter_layers):
input_lengths = _conv_out_length(input_lengths, 1, self.config.adapter_stride)
return input_lengths
@add_start_docstrings("""Wav2Vec2 Model with a quantizer and `VQ` head on top.""", WAV_2_VEC_2_START_DOCSTRING)
class FlaxWav2Vec2ForPreTraining(FlaxWav2Vec2PreTrainedModel):
module_class = FlaxWav2Vec2ForPreTrainingModule
@add_start_docstrings_to_model_forward(WAV_2_VEC_2_INPUTS_DOCSTRING)
# overwrite since has `gumbel_temperature` input
def __call__(
self,
input_values,
attention_mask=None,
mask_time_indices=None,
gumbel_temperature: int = 1,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
gumbel_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
freeze_feature_encoder: bool = False,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
batch_size, sequence_length = input_values.shape
if attention_mask is None:
attention_mask = jnp.ones((batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
if gumbel_rng is not None:
rngs["gumbel"] = gumbel_rng
inputs = {"params": params or self.params}
return self.module.apply(
inputs,
jnp.array(input_values, dtype="f4"),
jnp.array(attention_mask, dtype="i4"),
mask_time_indices,
gumbel_temperature,
not train,
output_attentions,
output_hidden_states,
freeze_feature_encoder,
return_dict,
rngs=rngs,
)
FLAX_WAV2VEC2_FOR_PRETRAINING_DOCSTRING = """
Returns:
Example:
```python
>>> import optax
>>> import numpy as np
>>> import jax.numpy as jnp
>>> from transformers import AutoFeatureExtractor, FlaxWav2Vec2ForPreTraining
>>> from transformers.models.wav2vec2.modeling_flax_wav2vec2 import _compute_mask_indices
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> feature_extractor = AutoFeatureExtractor.from_pretrained("facebook/wav2vec2-large-lv60")
>>> model = FlaxWav2Vec2ForPreTraining.from_pretrained("facebook/wav2vec2-large-lv60")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = feature_extractor(ds["speech"][0], return_tensors="np").input_values # Batch size 1
>>> # compute masked indices
>>> batch_size, raw_sequence_length = input_values.shape
>>> sequence_length = model._get_feat_extract_output_lengths(raw_sequence_length)
>>> mask_time_indices = _compute_mask_indices((batch_size, sequence_length), mask_prob=0.2, mask_length=2)
>>> outputs = model(input_values, mask_time_indices=mask_time_indices)
>>> # compute cosine similarity between predicted (=projected_states) and target (=projected_quantized_states)
>>> cosine_sim = optax.cosine_similarity(outputs.projected_states, outputs.projected_quantized_states)
>>> # show that cosine similarity is much higher than random
>>> assert np.asarray(cosine_sim)[mask_time_indices].mean() > 0.5
```
"""
overwrite_call_docstring(
FlaxWav2Vec2ForPreTraining,
WAV_2_VEC_2_INPUTS_DOCSTRING + FLAX_WAV2VEC2_FOR_PRETRAINING_DOCSTRING,
)
append_replace_return_docstrings(
FlaxWav2Vec2ForPreTraining, output_type=FlaxWav2Vec2ForPreTrainingOutput, config_class=Wav2Vec2Config
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/convert_wav2vec2_original_s3prl_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Hubert checkpoint."""
import argparse
import torch
from transformers import (
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
Wav2Vec2ForAudioFrameClassification,
Wav2Vec2ForSequenceClassification,
Wav2Vec2ForXVector,
logging,
)
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def convert_classification(base_model_name, hf_config, downstream_dict):
model = Wav2Vec2ForSequenceClassification.from_pretrained(base_model_name, config=hf_config)
model.projector.weight.data = downstream_dict["projector.weight"]
model.projector.bias.data = downstream_dict["projector.bias"]
model.classifier.weight.data = downstream_dict["model.post_net.linear.weight"]
model.classifier.bias.data = downstream_dict["model.post_net.linear.bias"]
return model
def convert_diarization(base_model_name, hf_config, downstream_dict):
model = Wav2Vec2ForAudioFrameClassification.from_pretrained(base_model_name, config=hf_config)
model.classifier.weight.data = downstream_dict["model.linear.weight"]
model.classifier.bias.data = downstream_dict["model.linear.bias"]
return model
def convert_xvector(base_model_name, hf_config, downstream_dict):
model = Wav2Vec2ForXVector.from_pretrained(base_model_name, config=hf_config)
model.projector.weight.data = downstream_dict["connector.weight"]
model.projector.bias.data = downstream_dict["connector.bias"]
for i, kernel_size in enumerate(hf_config.tdnn_kernel):
model.tdnn[i].kernel.weight.data = downstream_dict[
f"model.framelevel_feature_extractor.module.{i}.kernel.weight"
]
model.tdnn[i].kernel.bias.data = downstream_dict[f"model.framelevel_feature_extractor.module.{i}.kernel.bias"]
model.feature_extractor.weight.data = downstream_dict["model.utterancelevel_feature_extractor.linear1.weight"]
model.feature_extractor.bias.data = downstream_dict["model.utterancelevel_feature_extractor.linear1.bias"]
model.classifier.weight.data = downstream_dict["model.utterancelevel_feature_extractor.linear2.weight"]
model.classifier.bias.data = downstream_dict["model.utterancelevel_feature_extractor.linear2.bias"]
model.objective.weight.data = downstream_dict["objective.W"]
return model
@torch.no_grad()
def convert_s3prl_checkpoint(base_model_name, config_path, checkpoint_path, model_dump_path):
"""
Copy/paste/tweak model's weights to transformers design.
"""
checkpoint = torch.load(checkpoint_path, map_location="cpu")
downstream_dict = checkpoint["Downstream"]
hf_config = Wav2Vec2Config.from_pretrained(config_path)
hf_feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(
base_model_name, return_attention_mask=True, do_normalize=False
)
arch = hf_config.architectures[0]
if arch.endswith("ForSequenceClassification"):
hf_model = convert_classification(base_model_name, hf_config, downstream_dict)
elif arch.endswith("ForAudioFrameClassification"):
hf_model = convert_diarization(base_model_name, hf_config, downstream_dict)
elif arch.endswith("ForXVector"):
hf_model = convert_xvector(base_model_name, hf_config, downstream_dict)
else:
raise NotImplementedError(f"S3PRL weights conversion is not supported for {arch}")
if hf_config.use_weighted_layer_sum:
hf_model.layer_weights.data = checkpoint["Featurizer"]["weights"]
hf_feature_extractor.save_pretrained(model_dump_path)
hf_model.save_pretrained(model_dump_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--base_model_name", default=None, type=str, help="Name of the huggingface pretrained base model."
)
parser.add_argument("--config_path", default=None, type=str, help="Path to the huggingface classifier config.")
parser.add_argument("--checkpoint_path", default=None, type=str, help="Path to the s3prl checkpoint.")
parser.add_argument("--model_dump_path", default=None, type=str, help="Path to the final converted model.")
args = parser.parse_args()
convert_s3prl_checkpoint(args.base_model_name, args.config_path, args.checkpoint_path, args.model_dump_path)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_torch_available,
)
_import_structure = {
"configuration_wav2vec2": ["Wav2Vec2Config"],
"feature_extraction_wav2vec2": ["Wav2Vec2FeatureExtractor"],
"processing_wav2vec2": ["Wav2Vec2Processor"],
"tokenization_wav2vec2": ["Wav2Vec2CTCTokenizer", "Wav2Vec2Tokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_wav2vec2"] = [
"Wav2Vec2ForAudioFrameClassification",
"Wav2Vec2ForCTC",
"Wav2Vec2ForMaskedLM",
"Wav2Vec2ForPreTraining",
"Wav2Vec2ForSequenceClassification",
"Wav2Vec2ForXVector",
"Wav2Vec2Model",
"Wav2Vec2PreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_wav2vec2"] = [
"TFWav2Vec2ForCTC",
"TFWav2Vec2Model",
"TFWav2Vec2PreTrainedModel",
"TFWav2Vec2ForSequenceClassification",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_wav2vec2"] = [
"FlaxWav2Vec2ForCTC",
"FlaxWav2Vec2ForPreTraining",
"FlaxWav2Vec2Model",
"FlaxWav2Vec2PreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_wav2vec2 import Wav2Vec2Config
from .feature_extraction_wav2vec2 import Wav2Vec2FeatureExtractor
from .processing_wav2vec2 import Wav2Vec2Processor
from .tokenization_wav2vec2 import Wav2Vec2CTCTokenizer, Wav2Vec2Tokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_wav2vec2 import (
Wav2Vec2ForAudioFrameClassification,
Wav2Vec2ForCTC,
Wav2Vec2ForMaskedLM,
Wav2Vec2ForPreTraining,
Wav2Vec2ForSequenceClassification,
Wav2Vec2ForXVector,
Wav2Vec2Model,
Wav2Vec2PreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_wav2vec2 import (
TFWav2Vec2ForCTC,
TFWav2Vec2ForSequenceClassification,
TFWav2Vec2Model,
TFWav2Vec2PreTrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_wav2vec2 import (
FlaxWav2Vec2ForCTC,
FlaxWav2Vec2ForPreTraining,
FlaxWav2Vec2Model,
FlaxWav2Vec2PreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/wav2vec2/configuration_wav2vec2.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Wav2Vec2 model configuration"""
import functools
import operator
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class Wav2Vec2Config(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`Wav2Vec2Model`]. It is used to instantiate an
Wav2Vec2 model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the Wav2Vec2
[facebook/wav2vec2-base-960h](https://huggingface.co/facebook/wav2vec2-base-960h) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 32):
Vocabulary size of the Wav2Vec2 model. Defines the number of different tokens that can be represented by
the `inputs_ids` passed when calling [`Wav2Vec2Model`] or [`TFWav2Vec2Model`]. Vocabulary size of the
model. Defines the different tokens that can be represented by the *inputs_ids* passed to the forward
method of [`Wav2Vec2Model`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
activation_dropout (`float`, *optional*, defaults to 0.1):
The dropout ratio for activations inside the fully connected layer.
attention_dropout (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
final_dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for the final projection layer of [`Wav2Vec2ForCTC`].
layerdrop (`float`, *optional*, defaults to 0.1):
The LayerDrop probability. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556) for more
details.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
feat_extract_norm (`str`, *optional*, defaults to `"group"`):
The norm to be applied to 1D convolutional layers in feature encoder. One of `"group"` for group
normalization of only the first 1D convolutional layer or `"layer"` for layer normalization of all 1D
convolutional layers.
feat_proj_dropout (`float`, *optional*, defaults to 0.0):
The dropout probability for output of the feature encoder.
feat_extract_activation (`str, `optional`, defaults to `"gelu"`):
The non-linear activation function (function or string) in the 1D convolutional layers of the feature
extractor. If string, `"gelu"`, `"relu"`, `"selu"` and `"gelu_new"` are supported.
feat_quantizer_dropout (`float`, *optional*, defaults to 0.0):
The dropout probability for quantized feature encoder states.
conv_dim (`Tuple[int]` or `List[int]`, *optional*, defaults to `(512, 512, 512, 512, 512, 512, 512)`):
A tuple of integers defining the number of input and output channels of each 1D convolutional layer in the
feature encoder. The length of *conv_dim* defines the number of 1D convolutional layers.
conv_stride (`Tuple[int]` or `List[int]`, *optional*, defaults to `(5, 2, 2, 2, 2, 2, 2)`):
A tuple of integers defining the stride of each 1D convolutional layer in the feature encoder. The length
of *conv_stride* defines the number of convolutional layers and has to match the length of *conv_dim*.
conv_kernel (`Tuple[int]` or `List[int]`, *optional*, defaults to `(10, 3, 3, 3, 3, 3, 3)`):
A tuple of integers defining the kernel size of each 1D convolutional layer in the feature encoder. The
length of *conv_kernel* defines the number of convolutional layers and has to match the length of
*conv_dim*.
conv_bias (`bool`, *optional*, defaults to `False`):
Whether the 1D convolutional layers have a bias.
num_conv_pos_embeddings (`int`, *optional*, defaults to 128):
Number of convolutional positional embeddings. Defines the kernel size of 1D convolutional positional
embeddings layer.
num_conv_pos_embedding_groups (`int`, *optional*, defaults to 16):
Number of groups of 1D convolutional positional embeddings layer.
do_stable_layer_norm (`bool`, *optional*, defaults to `False`):
Whether to apply *stable* layer norm architecture of the Transformer encoder. `do_stable_layer_norm is
True` corresponds to applying layer norm before the attention layer, whereas `do_stable_layer_norm is
False` corresponds to applying layer norm after the attention layer.
apply_spec_augment (`bool`, *optional*, defaults to `True`):
Whether to apply *SpecAugment* data augmentation to the outputs of the feature encoder. For reference see
[SpecAugment: A Simple Data Augmentation Method for Automatic Speech
Recognition](https://arxiv.org/abs/1904.08779).
mask_time_prob (`float`, *optional*, defaults to 0.05):
Percentage (between 0 and 1) of all feature vectors along the time axis which will be masked. The masking
procecure generates ''mask_time_prob*len(time_axis)/mask_time_length'' independent masks over the axis. If
reasoning from the propability of each feature vector to be chosen as the start of the vector span to be
masked, *mask_time_prob* should be `prob_vector_start*mask_time_length`. Note that overlap may decrease the
actual percentage of masked vectors. This is only relevant if `apply_spec_augment is True`.
mask_time_length (`int`, *optional*, defaults to 10):
Length of vector span along the time axis.
mask_time_min_masks (`int`, *optional*, defaults to 2),:
The minimum number of masks of length `mask_feature_length` generated along the time axis, each time step,
irrespectively of `mask_feature_prob`. Only relevant if ''mask_time_prob*len(time_axis)/mask_time_length <
mask_time_min_masks''
mask_feature_prob (`float`, *optional*, defaults to 0.0):
Percentage (between 0 and 1) of all feature vectors along the feature axis which will be masked. The
masking procecure generates ''mask_feature_prob*len(feature_axis)/mask_time_length'' independent masks over
the axis. If reasoning from the propability of each feature vector to be chosen as the start of the vector
span to be masked, *mask_feature_prob* should be `prob_vector_start*mask_feature_length`. Note that overlap
may decrease the actual percentage of masked vectors. This is only relevant if `apply_spec_augment is
True`.
mask_feature_length (`int`, *optional*, defaults to 10):
Length of vector span along the feature axis.
mask_feature_min_masks (`int`, *optional*, defaults to 0),:
The minimum number of masks of length `mask_feature_length` generated along the feature axis, each time
step, irrespectively of `mask_feature_prob`. Only relevant if
''mask_feature_prob*len(feature_axis)/mask_feature_length < mask_feature_min_masks''
num_codevectors_per_group (`int`, *optional*, defaults to 320):
Number of entries in each quantization codebook (group).
num_codevector_groups (`int`, *optional*, defaults to 2):
Number of codevector groups for product codevector quantization.
contrastive_logits_temperature (`float`, *optional*, defaults to 0.1):
The temperature *kappa* in the contrastive loss.
feat_quantizer_dropout (`float`, *optional*, defaults to 0.0):
The dropout probability for the output of the feature encoder that's used by the quantizer.
num_negatives (`int`, *optional*, defaults to 100):
Number of negative samples for the contrastive loss.
codevector_dim (`int`, *optional*, defaults to 256):
Dimensionality of the quantized feature vectors.
proj_codevector_dim (`int`, *optional*, defaults to 256):
Dimensionality of the final projection of both the quantized and the transformer features.
diversity_loss_weight (`int`, *optional*, defaults to 0.1):
The weight of the codebook diversity loss component.
ctc_loss_reduction (`str`, *optional*, defaults to `"sum"`):
Specifies the reduction to apply to the output of `torch.nn.CTCLoss`. Only relevant when training an
instance of [`Wav2Vec2ForCTC`].
ctc_zero_infinity (`bool`, *optional*, defaults to `False`):
Whether to zero infinite losses and the associated gradients of `torch.nn.CTCLoss`. Infinite losses mainly
occur when the inputs are too short to be aligned to the targets. Only relevant when training an instance
of [`Wav2Vec2ForCTC`].
use_weighted_layer_sum (`bool`, *optional*, defaults to `False`):
Whether to use a weighted average of layer outputs with learned weights. Only relevant when using an
instance of [`Wav2Vec2ForSequenceClassification`].
classifier_proj_size (`int`, *optional*, defaults to 256):
Dimensionality of the projection before token mean-pooling for classification.
tdnn_dim (`Tuple[int]` or `List[int]`, *optional*, defaults to `(512, 512, 512, 512, 1500)`):
A tuple of integers defining the number of output channels of each 1D convolutional layer in the *TDNN*
module of the *XVector* model. The length of *tdnn_dim* defines the number of *TDNN* layers.
tdnn_kernel (`Tuple[int]` or `List[int]`, *optional*, defaults to `(5, 3, 3, 1, 1)`):
A tuple of integers defining the kernel size of each 1D convolutional layer in the *TDNN* module of the
*XVector* model. The length of *tdnn_kernel* has to match the length of *tdnn_dim*.
tdnn_dilation (`Tuple[int]` or `List[int]`, *optional*, defaults to `(1, 2, 3, 1, 1)`):
A tuple of integers defining the dilation factor of each 1D convolutional layer in *TDNN* module of the
*XVector* model. The length of *tdnn_dilation* has to match the length of *tdnn_dim*.
xvector_output_dim (`int`, *optional*, defaults to 512):
Dimensionality of the *XVector* embedding vectors.
add_adapter (`bool`, *optional*, defaults to `False`):
Whether a convolutional network should be stacked on top of the Wav2Vec2 Encoder. Can be very useful for
warm-starting Wav2Vec2 for SpeechEncoderDecoder models.
adapter_kernel_size (`int`, *optional*, defaults to 3):
Kernel size of the convolutional layers in the adapter network. Only relevant if `add_adapter is True`.
adapter_stride (`int`, *optional*, defaults to 2):
Stride of the convolutional layers in the adapter network. Only relevant if `add_adapter is True`.
num_adapter_layers (`int`, *optional*, defaults to 3):
Number of convolutional layers that should be used in the adapter network. Only relevant if `add_adapter is
True`.
adapter_attn_dim (`int`, *optional*):
Dimension of the attention adapter weights to be used in each attention block. An example of a model using
attention adapters is [facebook/mms-1b-all](https://huggingface.co/facebook/mms-1b-all).
output_hidden_size (`int`, *optional*):
Dimensionality of the encoder output layer. If not defined, this defaults to *hidden-size*. Only relevant
if `add_adapter is True`.
Example:
```python
>>> from transformers import Wav2Vec2Config, Wav2Vec2Model
>>> # Initializing a Wav2Vec2 facebook/wav2vec2-base-960h style configuration
>>> configuration = Wav2Vec2Config()
>>> # Initializing a model (with random weights) from the facebook/wav2vec2-base-960h style configuration
>>> model = Wav2Vec2Model(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "wav2vec2"
def __init__(
self,
vocab_size=32,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout=0.1,
activation_dropout=0.1,
attention_dropout=0.1,
feat_proj_dropout=0.0,
feat_quantizer_dropout=0.0,
final_dropout=0.1,
layerdrop=0.1,
initializer_range=0.02,
layer_norm_eps=1e-5,
feat_extract_norm="group",
feat_extract_activation="gelu",
conv_dim=(512, 512, 512, 512, 512, 512, 512),
conv_stride=(5, 2, 2, 2, 2, 2, 2),
conv_kernel=(10, 3, 3, 3, 3, 2, 2),
conv_bias=False,
num_conv_pos_embeddings=128,
num_conv_pos_embedding_groups=16,
do_stable_layer_norm=False,
apply_spec_augment=True,
mask_time_prob=0.05,
mask_time_length=10,
mask_time_min_masks=2,
mask_feature_prob=0.0,
mask_feature_length=10,
mask_feature_min_masks=0,
num_codevectors_per_group=320,
num_codevector_groups=2,
contrastive_logits_temperature=0.1,
num_negatives=100,
codevector_dim=256,
proj_codevector_dim=256,
diversity_loss_weight=0.1,
ctc_loss_reduction="sum",
ctc_zero_infinity=False,
use_weighted_layer_sum=False,
classifier_proj_size=256,
tdnn_dim=(512, 512, 512, 512, 1500),
tdnn_kernel=(5, 3, 3, 1, 1),
tdnn_dilation=(1, 2, 3, 1, 1),
xvector_output_dim=512,
pad_token_id=0,
bos_token_id=1,
eos_token_id=2,
add_adapter=False,
adapter_kernel_size=3,
adapter_stride=2,
num_adapter_layers=3,
output_hidden_size=None,
adapter_attn_dim=None,
**kwargs,
):
super().__init__(**kwargs, pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id)
self.hidden_size = hidden_size
self.feat_extract_norm = feat_extract_norm
self.feat_extract_activation = feat_extract_activation
self.conv_dim = list(conv_dim)
self.conv_stride = list(conv_stride)
self.conv_kernel = list(conv_kernel)
self.conv_bias = conv_bias
self.num_conv_pos_embeddings = num_conv_pos_embeddings
self.num_conv_pos_embedding_groups = num_conv_pos_embedding_groups
self.num_feat_extract_layers = len(self.conv_dim)
self.num_hidden_layers = num_hidden_layers
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.num_attention_heads = num_attention_heads
self.hidden_dropout = hidden_dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.feat_proj_dropout = feat_proj_dropout
self.final_dropout = final_dropout
self.layerdrop = layerdrop
self.layer_norm_eps = layer_norm_eps
self.initializer_range = initializer_range
self.vocab_size = vocab_size
self.do_stable_layer_norm = do_stable_layer_norm
self.use_weighted_layer_sum = use_weighted_layer_sum
if (
(len(self.conv_stride) != self.num_feat_extract_layers)
or (len(self.conv_kernel) != self.num_feat_extract_layers)
or (len(self.conv_dim) != self.num_feat_extract_layers)
):
raise ValueError(
"Configuration for convolutional layers is incorrect. It is required that `len(config.conv_dim)` =="
" `len(config.conv_stride)` == `len(config.conv_kernel)`, but is `len(config.conv_dim) ="
f" {len(self.conv_dim)}`, `len(config.conv_stride) = {len(self.conv_stride)}`,"
f" `len(config.conv_kernel) = {len(self.conv_kernel)}`."
)
# fine-tuning config parameters for SpecAugment: https://arxiv.org/abs/1904.08779
self.apply_spec_augment = apply_spec_augment
self.mask_time_prob = mask_time_prob
self.mask_time_length = mask_time_length
self.mask_time_min_masks = mask_time_min_masks
self.mask_feature_prob = mask_feature_prob
self.mask_feature_length = mask_feature_length
self.mask_feature_min_masks = mask_feature_min_masks
# parameters for pretraining with codevector quantized representations
self.num_codevectors_per_group = num_codevectors_per_group
self.num_codevector_groups = num_codevector_groups
self.contrastive_logits_temperature = contrastive_logits_temperature
self.feat_quantizer_dropout = feat_quantizer_dropout
self.num_negatives = num_negatives
self.codevector_dim = codevector_dim
self.proj_codevector_dim = proj_codevector_dim
self.diversity_loss_weight = diversity_loss_weight
# ctc loss
self.ctc_loss_reduction = ctc_loss_reduction
self.ctc_zero_infinity = ctc_zero_infinity
# adapter
self.add_adapter = add_adapter
self.adapter_kernel_size = adapter_kernel_size
self.adapter_stride = adapter_stride
self.num_adapter_layers = num_adapter_layers
self.output_hidden_size = output_hidden_size or hidden_size
self.adapter_attn_dim = adapter_attn_dim
# SequenceClassification-specific parameter. Feel free to ignore for other classes.
self.classifier_proj_size = classifier_proj_size
# XVector-specific parameters. Feel free to ignore for other classes.
self.tdnn_dim = list(tdnn_dim)
self.tdnn_kernel = list(tdnn_kernel)
self.tdnn_dilation = list(tdnn_dilation)
self.xvector_output_dim = xvector_output_dim
@property
def inputs_to_logits_ratio(self):
return functools.reduce(operator.mul, self.conv_stride, 1)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/openai/configuration_openai.py | # coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""OpenAI GPT configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class OpenAIGPTConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`OpenAIGPTModel`] or a [`TFOpenAIGPTModel`]. It is
used to instantiate a GPT model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the GPT
[openai-community/openai-gpt](https://huggingface.co/openai-community/openai-gpt) architecture from OpenAI.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 40478):
Vocabulary size of the GPT-2 model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`OpenAIGPTModel`] or [`TFOpenAIGPTModel`].
n_positions (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
n_embd (`int`, *optional*, defaults to 768):
Dimensionality of the embeddings and hidden states.
n_layer (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
n_head (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
afn (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
resid_pdrop (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
embd_pdrop (`int`, *optional*, defaults to 0.1):
The dropout ratio for the embeddings.
attn_pdrop (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-05):
The epsilon to use in the layer normalization layers
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
summary_type (`str`, *optional*, defaults to `"cls_index"`):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Has to be one of the following options:
- `"last"`: Take the last token hidden state (like XLNet).
- `"first"`: Take the first token hidden state (like BERT).
- `"mean"`: Take the mean of all tokens hidden states.
- `"cls_index"`: Supply a Tensor of classification token position (like GPT/GPT-2).
- `"attn"`: Not implemented now, use multi-head attention.
summary_use_proj (`bool`, *optional*, defaults to `True`):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Whether or not to add a projection after the vector extraction.
summary_activation (`str`, *optional*):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Pass `"tanh"` for a tanh activation to the output, any other value will result in no activation.
summary_proj_to_labels (`bool`, *optional*, defaults to `True`):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Whether the projection outputs should have `config.num_labels` or `config.hidden_size` classes.
summary_first_dropout (`float`, *optional*, defaults to 0.1):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
The dropout ratio to be used after the projection and activation.
Examples:
```python
>>> from transformers import OpenAIGPTConfig, OpenAIGPTModel
>>> # Initializing a GPT configuration
>>> configuration = OpenAIGPTConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = OpenAIGPTModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "openai-gpt"
attribute_map = {
"max_position_embeddings": "n_positions",
"hidden_size": "n_embd",
"num_attention_heads": "n_head",
"num_hidden_layers": "n_layer",
}
def __init__(
self,
vocab_size=40478,
n_positions=512,
n_embd=768,
n_layer=12,
n_head=12,
afn="gelu",
resid_pdrop=0.1,
embd_pdrop=0.1,
attn_pdrop=0.1,
layer_norm_epsilon=1e-5,
initializer_range=0.02,
summary_type="cls_index",
summary_use_proj=True,
summary_activation=None,
summary_proj_to_labels=True,
summary_first_dropout=0.1,
**kwargs,
):
self.vocab_size = vocab_size
self.n_positions = n_positions
self.n_embd = n_embd
self.n_layer = n_layer
self.n_head = n_head
self.afn = afn
self.resid_pdrop = resid_pdrop
self.embd_pdrop = embd_pdrop
self.attn_pdrop = attn_pdrop
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_range = initializer_range
self.summary_type = summary_type
self.summary_use_proj = summary_use_proj
self.summary_activation = summary_activation
self.summary_first_dropout = summary_first_dropout
self.summary_proj_to_labels = summary_proj_to_labels
super().__init__(**kwargs)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/openai/convert_openai_original_tf_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert OpenAI GPT checkpoint."""
import argparse
import torch
from transformers import OpenAIGPTConfig, OpenAIGPTModel, load_tf_weights_in_openai_gpt
from transformers.utils import CONFIG_NAME, WEIGHTS_NAME, logging
logging.set_verbosity_info()
def convert_openai_checkpoint_to_pytorch(openai_checkpoint_folder_path, openai_config_file, pytorch_dump_folder_path):
# Construct model
if openai_config_file == "":
config = OpenAIGPTConfig()
else:
config = OpenAIGPTConfig.from_json_file(openai_config_file)
model = OpenAIGPTModel(config)
# Load weights from numpy
load_tf_weights_in_openai_gpt(model, config, openai_checkpoint_folder_path)
# Save pytorch-model
pytorch_weights_dump_path = pytorch_dump_folder_path + "/" + WEIGHTS_NAME
pytorch_config_dump_path = pytorch_dump_folder_path + "/" + CONFIG_NAME
print(f"Save PyTorch model to {pytorch_weights_dump_path}")
torch.save(model.state_dict(), pytorch_weights_dump_path)
print(f"Save configuration file to {pytorch_config_dump_path}")
with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
f.write(config.to_json_string())
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--openai_checkpoint_folder_path",
default=None,
type=str,
required=True,
help="Path to the TensorFlow checkpoint path.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--openai_config_file",
default="",
type=str,
help=(
"An optional config json file corresponding to the pre-trained OpenAI model. \n"
"This specifies the model architecture."
),
)
args = parser.parse_args()
convert_openai_checkpoint_to_pytorch(
args.openai_checkpoint_folder_path, args.openai_config_file, args.pytorch_dump_folder_path
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/openai/modeling_tf_openai.py | # coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TF 2.0 OpenAI GPT model."""
from __future__ import annotations
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput, TFSequenceClassifierOutput
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFConv1D,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFSequenceSummary,
TFSharedEmbeddings,
get_initializer,
keras,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_openai import OpenAIGPTConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "openai-community/openai-gpt"
_CONFIG_FOR_DOC = "OpenAIGPTConfig"
class TFAttention(keras.layers.Layer):
def __init__(self, nx, config, scale=False, **kwargs):
super().__init__(**kwargs)
n_state = nx # in Attention: n_state=768 (nx=n_embd)
# [switch nx => n_state from Block to Attention to keep identical to TF implementation]
assert (
n_state % config.n_head == 0
), f"Hidden dimension {n_state} not dividable by number of heads {config.n_head}"
self.n_head = config.n_head
self.split_size = n_state
self.scale = scale
self.output_attentions = config.output_attentions
self.c_attn = TFConv1D(n_state * 3, nx, initializer_range=config.initializer_range, name="c_attn")
self.c_proj = TFConv1D(n_state, nx, initializer_range=config.initializer_range, name="c_proj")
self.attn_dropout = keras.layers.Dropout(config.attn_pdrop)
self.resid_dropout = keras.layers.Dropout(config.resid_pdrop)
self.n_state = n_state
self.pruned_heads = set()
def prune_heads(self, heads):
pass
@staticmethod
def causal_attention_mask(nd, ns):
"""
1's in the lower triangle, counting from the lower right corner. Same as tf.matrix_band_part(tf.ones([nd, ns]),
-1, ns-nd), but doesn't produce garbage on TPUs.
"""
i = tf.range(nd)[:, None]
j = tf.range(ns)
m = i >= j - ns + nd
return m
def _attn(self, q, k, v, attention_mask, head_mask, output_attentions, training=False):
# q, k, v have shape [batch, heads, sequence, features]
w = tf.matmul(q, k, transpose_b=True)
if self.scale:
dk = tf.cast(shape_list(k)[-1], dtype=w.dtype) # scale attention_scores
w = w / tf.math.sqrt(dk)
# w has shape [batch, heads, dst_sequence, src_sequence], where information flows from src to dst.
_, _, nd, ns = shape_list(w)
b = tf.cast(self.causal_attention_mask(nd, ns), dtype=w.dtype)
b = tf.reshape(b, [1, 1, nd, ns])
w = w * b - 1e4 * (1 - b)
if attention_mask is not None:
# Apply the attention mask
attention_mask = tf.cast(attention_mask, dtype=w.dtype)
w = w + attention_mask
w = stable_softmax(w, axis=-1)
w = self.attn_dropout(w, training=training)
# Mask heads if we want to
if head_mask is not None:
w = w * head_mask
outputs = [tf.matmul(w, v)]
if output_attentions:
outputs.append(w)
return outputs
def merge_heads(self, x):
x = tf.transpose(x, [0, 2, 1, 3])
x_shape = shape_list(x)
new_x_shape = x_shape[:-2] + [x_shape[-2] * x_shape[-1]]
return tf.reshape(x, new_x_shape)
def split_heads(self, x):
x_shape = shape_list(x)
new_x_shape = x_shape[:-1] + [self.n_head, x_shape[-1] // self.n_head]
x = tf.reshape(x, new_x_shape)
return tf.transpose(x, (0, 2, 1, 3)) # (batch, head, seq_length, head_features)
def call(self, x, attention_mask, head_mask, output_attentions, training=False):
x = self.c_attn(x)
query, key, value = tf.split(x, 3, axis=2)
query = self.split_heads(query)
key = self.split_heads(key)
value = self.split_heads(value)
attn_outputs = self._attn(query, key, value, attention_mask, head_mask, output_attentions, training=training)
a = attn_outputs[0]
a = self.merge_heads(a)
a = self.c_proj(a)
a = self.resid_dropout(a, training=training)
outputs = [a] + attn_outputs[1:]
return outputs # a, (attentions)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "c_attn", None) is not None:
with tf.name_scope(self.c_attn.name):
self.c_attn.build([None, None, self.n_state * 3])
if getattr(self, "c_proj", None) is not None:
with tf.name_scope(self.c_proj.name):
self.c_proj.build([None, None, self.n_state])
class TFMLP(keras.layers.Layer):
def __init__(self, n_state, config, **kwargs):
super().__init__(**kwargs)
nx = config.n_embd
self.c_fc = TFConv1D(n_state, nx, initializer_range=config.initializer_range, name="c_fc")
self.c_proj = TFConv1D(nx, n_state, initializer_range=config.initializer_range, name="c_proj")
self.act = get_tf_activation("gelu")
self.dropout = keras.layers.Dropout(config.resid_pdrop)
self.nx = nx
self.n_state = n_state
def call(self, x, training=False):
h = self.act(self.c_fc(x))
h2 = self.c_proj(h)
h2 = self.dropout(h2, training=training)
return h2
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "c_fc", None) is not None:
with tf.name_scope(self.c_fc.name):
self.c_fc.build([None, None, self.n_state])
if getattr(self, "c_proj", None) is not None:
with tf.name_scope(self.c_proj.name):
self.c_proj.build([None, None, self.nx])
class TFBlock(keras.layers.Layer):
def __init__(self, config, scale=False, **kwargs):
super().__init__(**kwargs)
nx = config.n_embd
self.attn = TFAttention(nx, config, scale, name="attn")
self.ln_1 = keras.layers.LayerNormalization(epsilon=config.layer_norm_epsilon, name="ln_1")
self.mlp = TFMLP(4 * nx, config, name="mlp")
self.ln_2 = keras.layers.LayerNormalization(epsilon=config.layer_norm_epsilon, name="ln_2")
self.nx = nx
def call(self, x, attention_mask, head_mask, output_attentions, training=False):
output_attn = self.attn(x, attention_mask, head_mask, output_attentions, training=training)
a = output_attn[0] # output_attn: a, (attentions)
n = self.ln_1(x + a)
m = self.mlp(n, training=training)
h = self.ln_2(n + m)
outputs = [h] + output_attn[1:]
return outputs # x, (attentions)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attn", None) is not None:
with tf.name_scope(self.attn.name):
self.attn.build(None)
if getattr(self, "ln_1", None) is not None:
with tf.name_scope(self.ln_1.name):
self.ln_1.build([None, None, self.nx])
if getattr(self, "mlp", None) is not None:
with tf.name_scope(self.mlp.name):
self.mlp.build(None)
if getattr(self, "ln_2", None) is not None:
with tf.name_scope(self.ln_2.name):
self.ln_2.build([None, None, self.nx])
@keras_serializable
class TFOpenAIGPTMainLayer(keras.layers.Layer):
config_class = OpenAIGPTConfig
def __init__(self, config, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
self.config = config
self.output_hidden_states = config.output_hidden_states
self.output_attentions = config.output_attentions
self.return_dict = config.use_return_dict
self.num_hidden_layers = config.n_layer
self.n_embd = config.n_embd
self.n_positions = config.n_positions
self.initializer_range = config.initializer_range
self.tokens_embed = TFSharedEmbeddings(
config.vocab_size, config.n_embd, initializer_range=config.initializer_range, name="tokens_embed"
)
self.drop = keras.layers.Dropout(config.embd_pdrop)
self.h = [TFBlock(config, scale=True, name=f"h_._{i}") for i in range(config.n_layer)]
def build(self, input_shape=None):
with tf.name_scope("positions_embed"):
self.positions_embed = self.add_weight(
name="embeddings",
shape=[self.n_positions, self.n_embd],
initializer=get_initializer(self.initializer_range),
)
if self.built:
return
self.built = True
if getattr(self, "tokens_embed", None) is not None:
with tf.name_scope(self.tokens_embed.name):
self.tokens_embed.build(None)
if getattr(self, "h", None) is not None:
for layer in self.h:
with tf.name_scope(layer.name):
layer.build(None)
def get_input_embeddings(self):
return self.tokens_embed
def set_input_embeddings(self, value):
self.tokens_embed.weight = value
self.tokens_embed.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
raise NotImplementedError
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutput]:
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
input_ids = tf.reshape(input_ids, [-1, input_shape[-1]])
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if position_ids is None:
position_ids = tf.expand_dims(tf.range(input_shape[-1]), axis=0)
if attention_mask is not None:
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = tf.reshape(attention_mask, (input_shape[0], 1, 1, input_shape[1]))
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
one_cst = tf.constant(1.0)
attention_mask = tf.cast(attention_mask, dtype=one_cst.dtype)
attention_mask = tf.multiply(tf.subtract(one_cst, attention_mask), tf.constant(-10000.0))
else:
attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.num_hidden_layers
# head_mask = tf.constant([0] * self.num_hidden_layers)
position_ids = tf.reshape(position_ids, [-1, shape_list(position_ids)[-1]])
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.tokens_embed(input_ids, mode="embedding")
position_embeds = tf.gather(self.positions_embed, position_ids)
if token_type_ids is not None:
token_type_ids = tf.reshape(token_type_ids, [-1, shape_list(token_type_ids)[-1]])
check_embeddings_within_bounds(token_type_ids, self.config.vocab_size, "token_type_ids")
token_type_embeds = self.tokens_embed(token_type_ids, mode="embedding")
else:
token_type_embeds = 0
hidden_states = inputs_embeds + position_embeds + token_type_embeds
hidden_states = self.drop(hidden_states, training=training)
output_shape = input_shape + [shape_list(hidden_states)[-1]]
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for i, block in enumerate(self.h):
if output_hidden_states:
all_hidden_states = all_hidden_states + (tf.reshape(hidden_states, output_shape),)
outputs = block(
hidden_states,
attention_mask,
head_mask[i],
output_attentions,
training=training,
)
hidden_states = outputs[0]
if output_attentions:
all_attentions = all_attentions + (outputs[1],)
hidden_states = tf.reshape(hidden_states, output_shape)
# Add last hidden state
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if output_attentions:
# let the number of heads free (-1) so we can extract attention even after head pruning
attention_output_shape = input_shape[:-1] + [-1] + shape_list(all_attentions[0])[-2:]
all_attentions = tuple(tf.reshape(t, attention_output_shape) for t in all_attentions)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
class TFOpenAIGPTPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = OpenAIGPTConfig
base_model_prefix = "transformer"
@dataclass
class TFOpenAIGPTDoubleHeadsModelOutput(ModelOutput):
"""
Base class for outputs of models predicting if two sentences are consecutive or not.
Args:
logits (`tf.Tensor` of shape `(batch_size, num_choices, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
mc_logits (`tf.Tensor` of shape `(batch_size, num_choices)`):
Prediction scores of the multiple choice classification head (scores for each choice before SoftMax).
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
logits: tf.Tensor = None
mc_logits: tf.Tensor = None
hidden_states: Tuple[tf.Tensor] | None = None
attentions: Tuple[tf.Tensor] | None = None
OPENAI_GPT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`OpenAIGPTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
OPENAI_GPT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`Numpy array` or `tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`tf.Tensor` or `Numpy array` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare OpenAI GPT transformer model outputting raw hidden-states without any specific head on top.",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTModel(TFOpenAIGPTPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutput]:
outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTLMHeadModel(TFOpenAIGPTPreTrainedModel, TFCausalLanguageModelingLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
# OpenAIGPT does not have past caching features
self.supports_xla_generation = False
def get_output_embeddings(self):
return self.get_input_embeddings()
def set_output_embeddings(self, value):
self.set_input_embeddings(value)
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFCausalLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFCausalLMOutput]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss. Indices should be in `[0, ...,
config.vocab_size - 1]`.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
logits = self.transformer.tokens_embed(hidden_states, mode="linear")
loss = None
if labels is not None:
# shift labels to the left and cut last logit token
shifted_logits = logits[:, :-1]
labels = labels[:, 1:]
loss = self.hf_compute_loss(labels, shifted_logits)
if not return_dict:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def prepare_inputs_for_generation(self, inputs, **kwargs):
return {"input_ids": inputs}
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling and a multiple-choice classification head on top e.g. for
RocStories/SWAG tasks. The two heads are two linear layers. The language modeling head has its weights tied to the
input embeddings, the classification head takes as input the input of a specified classification token index in the
input sequence).
""",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTDoubleHeadsModel(TFOpenAIGPTPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
config.num_labels = 1
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
self.multiple_choice_head = TFSequenceSummary(
config, initializer_range=config.initializer_range, name="multiple_choice_head"
)
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFOpenAIGPTDoubleHeadsModelOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
mc_token_ids: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFOpenAIGPTDoubleHeadsModelOutput]:
r"""
mc_token_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, num_choices)`, *optional*, default to index of the last token of the input):
Index of the classification token in each input sequence. Selected in the range `[0, input_ids.size(-1) -
1]`.
Return:
Examples:
```python
>>> import tensorflow as tf
>>> from transformers import AutoTokenizer, TFOpenAIGPTDoubleHeadsModel
>>> tokenizer = AutoTokenizer.from_pretrained("openai-community/openai-gpt")
>>> model = TFOpenAIGPTDoubleHeadsModel.from_pretrained("openai-community/openai-gpt")
>>> # Add a [CLS] to the vocabulary (we should train it also!)
>>> tokenizer.add_special_tokens({"cls_token": "[CLS]"})
>>> model.resize_token_embeddings(len(tokenizer)) # Update the model embeddings with the new vocabulary size
>>> print(tokenizer.cls_token_id, len(tokenizer)) # The newly token the last token of the vocabulary
>>> choices = ["Hello, my dog is cute [CLS]", "Hello, my cat is cute [CLS]"]
>>> encoding = tokenizer(choices, return_tensors="tf")
>>> inputs = {k: tf.expand_dims(v, 0) for k, v in encoding.items()}
>>> inputs["mc_token_ids"] = tf.constant(
... [inputs["input_ids"].shape[-1] - 1, inputs["input_ids"].shape[-1] - 1]
... )[
... None, :
... ] # Batch size 1
>>> outputs = model(inputs)
>>> lm_prediction_scores, mc_prediction_scores = outputs[:2]
```"""
if input_ids is not None:
input_shapes = shape_list(input_ids)
else:
input_shapes = shape_list(inputs_embeds)[:-1]
seq_length = input_shapes[-1]
flat_input_ids = tf.reshape(input_ids, (-1, seq_length)) if input_ids is not None else None
flat_attention_mask = tf.reshape(attention_mask, (-1, seq_length)) if attention_mask is not None else None
flat_token_type_ids = tf.reshape(token_type_ids, (-1, seq_length)) if token_type_ids is not None else None
flat_position_ids = tf.reshape(position_ids, (-1, seq_length)) if position_ids is not None else None
transformer_outputs = self.transformer(
flat_input_ids,
flat_attention_mask,
flat_token_type_ids,
flat_position_ids,
head_mask,
inputs_embeds,
output_attentions,
output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
hidden_states = tf.reshape(hidden_states, input_shapes + shape_list(hidden_states)[-1:])
if return_dict and output_hidden_states:
# We do this to match the slightly odd PT behaviour - the final hidden state is reshaped to rank 4 when the
# input is rank 3, but all other hidden states remain at rank-3 (with the first 2 dims merged)
all_hidden_states = transformer_outputs.hidden_states[:-1] + (hidden_states,)
else:
all_hidden_states = None
lm_logits = self.transformer.tokens_embed(hidden_states, mode="linear")
mc_logits = self.multiple_choice_head(hidden_states, mc_token_ids, training=training)
mc_logits = tf.squeeze(mc_logits, axis=-1)
if not return_dict:
return (lm_logits, mc_logits) + transformer_outputs[1:]
return TFOpenAIGPTDoubleHeadsModelOutput(
logits=lm_logits,
mc_logits=mc_logits,
hidden_states=all_hidden_states,
attentions=transformer_outputs.attentions,
)
@property
def input_signature(self):
return {
"input_ids": tf.TensorSpec((None, None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None, None), tf.int32, name="attention_mask"),
"mc_token_ids": tf.TensorSpec((None, None), tf.int32, name="token_type_ids"),
}
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "multiple_choice_head", None) is not None:
with tf.name_scope(self.multiple_choice_head.name):
self.multiple_choice_head.build(None)
@add_start_docstrings(
"""
The OpenAI GPT Model transformer with a sequence classification head on top (linear layer).
[`TFOpenAIGPTForSequenceClassification`] uses the last token in order to do the classification, as other causal
models (e.g. GPT-2) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTForSequenceClassification(TFOpenAIGPTPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.score = keras.layers.Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
name="score",
use_bias=False,
)
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFSequenceClassifierOutput]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss. Indices should be in `[0, ...,
config.vocab_size - 1]`.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
in_logits = None
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
sequence_lengths = (
tf.argmax(tf.cast(tf.math.equal(input_ids, self.config.pad_token_id), input_ids.dtype), axis=-1)
- 1
)
sequence_lengths = tf.where(sequence_lengths >= 0, sequence_lengths, input_ids.shape[-1] - 1)
in_logits = tf.gather(logits, sequence_lengths, batch_dims=1, axis=1)
else:
sequence_lengths = -1
logger.warning_once(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
loss = None
if labels is not None:
if input_ids is not None:
batch_size, sequence_length = shape_list(input_ids)[:2]
else:
batch_size, sequence_length = shape_list(inputs_embeds)[:2]
assert (
self.config.pad_token_id is not None or batch_size == 1
), "Cannot handle batch sizes > 1 if no padding token is defined."
if not tf.is_tensor(sequence_lengths):
in_logits = logits[0:batch_size, sequence_lengths]
loss = self.hf_compute_loss(tf.reshape(labels, [-1, 1]), tf.reshape(in_logits, [-1, self.num_labels]))
pooled_logits = in_logits if in_logits is not None else logits
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=pooled_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "score", None) is not None:
with tf.name_scope(self.score.name):
self.score.build([None, None, self.config.n_embd])
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/openai/tokenization_openai_fast.py | # coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Fast Tokenization classes for OpenAI GPT."""
from typing import Optional, Tuple
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_openai import OpenAIGPTTokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt", "tokenizer_file": "tokenizer.json"}
class OpenAIGPTTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" GPT Tokenizer (backed by HuggingFace's *tokenizers* library). Based on Byte-Pair-Encoding with
the following peculiarities:
- lower case all inputs
- uses BERT's BasicTokenizer for pre-BPE tokenization
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = OpenAIGPTTokenizer
def __init__(self, vocab_file=None, merges_file=None, tokenizer_file=None, unk_token="<unk>", **kwargs):
super().__init__(vocab_file, merges_file, tokenizer_file=tokenizer_file, unk_token=unk_token, **kwargs)
@property
def do_lower_case(self):
return True
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/openai/tokenization_openai.py | # coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for OpenAI GPT."""
import json
import os
import re
import unicodedata
from typing import Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"merges_file": "merges.txt",
}
# Copied from transformers.models.bert.tokenization_bert.whitespace_tokenize
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens
# Copied from transformers.models.bert.tokenization_bert.BasicTokenizer
class BasicTokenizer:
"""
Constructs a BasicTokenizer that will run basic tokenization (punctuation splitting, lower casing, etc.).
Args:
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
never_split (`Iterable`, *optional*):
Collection of tokens which will never be split during tokenization. Only has an effect when
`do_basic_tokenize=True`
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters.
This should likely be deactivated for Japanese (see this
[issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
do_split_on_punc (`bool`, *optional*, defaults to `True`):
In some instances we want to skip the basic punctuation splitting so that later tokenization can capture
the full context of the words, such as contractions.
"""
def __init__(
self,
do_lower_case=True,
never_split=None,
tokenize_chinese_chars=True,
strip_accents=None,
do_split_on_punc=True,
):
if never_split is None:
never_split = []
self.do_lower_case = do_lower_case
self.never_split = set(never_split)
self.tokenize_chinese_chars = tokenize_chinese_chars
self.strip_accents = strip_accents
self.do_split_on_punc = do_split_on_punc
def tokenize(self, text, never_split=None):
"""
Basic Tokenization of a piece of text. For sub-word tokenization, see WordPieceTokenizer.
Args:
never_split (`List[str]`, *optional*)
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of token not to split.
"""
# union() returns a new set by concatenating the two sets.
never_split = self.never_split.union(set(never_split)) if never_split else self.never_split
text = self._clean_text(text)
# This was added on November 1st, 2018 for the multilingual and Chinese
# models. This is also applied to the English models now, but it doesn't
# matter since the English models were not trained on any Chinese data
# and generally don't have any Chinese data in them (there are Chinese
# characters in the vocabulary because Wikipedia does have some Chinese
# words in the English Wikipedia.).
if self.tokenize_chinese_chars:
text = self._tokenize_chinese_chars(text)
# prevents treating the same character with different unicode codepoints as different characters
unicode_normalized_text = unicodedata.normalize("NFC", text)
orig_tokens = whitespace_tokenize(unicode_normalized_text)
split_tokens = []
for token in orig_tokens:
if token not in never_split:
if self.do_lower_case:
token = token.lower()
if self.strip_accents is not False:
token = self._run_strip_accents(token)
elif self.strip_accents:
token = self._run_strip_accents(token)
split_tokens.extend(self._run_split_on_punc(token, never_split))
output_tokens = whitespace_tokenize(" ".join(split_tokens))
return output_tokens
def _run_strip_accents(self, text):
"""Strips accents from a piece of text."""
text = unicodedata.normalize("NFD", text)
output = []
for char in text:
cat = unicodedata.category(char)
if cat == "Mn":
continue
output.append(char)
return "".join(output)
def _run_split_on_punc(self, text, never_split=None):
"""Splits punctuation on a piece of text."""
if not self.do_split_on_punc or (never_split is not None and text in never_split):
return [text]
chars = list(text)
i = 0
start_new_word = True
output = []
while i < len(chars):
char = chars[i]
if _is_punctuation(char):
output.append([char])
start_new_word = True
else:
if start_new_word:
output.append([])
start_new_word = False
output[-1].append(char)
i += 1
return ["".join(x) for x in output]
def _tokenize_chinese_chars(self, text):
"""Adds whitespace around any CJK character."""
output = []
for char in text:
cp = ord(char)
if self._is_chinese_char(cp):
output.append(" ")
output.append(char)
output.append(" ")
else:
output.append(char)
return "".join(output)
def _is_chinese_char(self, cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def _clean_text(self, text):
"""Performs invalid character removal and whitespace cleanup on text."""
output = []
for char in text:
cp = ord(char)
if cp == 0 or cp == 0xFFFD or _is_control(char):
continue
if _is_whitespace(char):
output.append(" ")
else:
output.append(char)
return "".join(output)
def get_pairs(word):
"""
Return set of symbol pairs in a word. word is represented as tuple of symbols (symbols being variable-length
strings)
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
def text_standardize(text):
"""
fixes some issues the spacy tokenizer had on books corpus also does some whitespace standardization
"""
text = text.replace("—", "-")
text = text.replace("–", "-")
text = text.replace("―", "-")
text = text.replace("…", "...")
text = text.replace("´", "'")
text = re.sub(r"""(-+|~+|!+|"+|;+|\?+|\++|,+|\)+|\(+|\\+|\/+|\*+|\[+|\]+|}+|{+|\|+|_+)""", r" \1 ", text)
text = re.sub(r"\s*\n\s*", " \n ", text)
text = re.sub(r"[^\S\n]+", " ", text)
return text.strip()
class OpenAIGPTTokenizer(PreTrainedTokenizer):
"""
Construct a GPT Tokenizer. Based on Byte-Pair-Encoding with the following peculiarities:
- lowercases all inputs,
- uses `SpaCy` tokenizer and `ftfy` for pre-BPE tokenization if they are installed, fallback to BERT's
`BasicTokenizer` if not.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
def __init__(self, vocab_file, merges_file, unk_token="<unk>", **kwargs):
try:
import ftfy
from spacy.lang.en import English
_nlp = English()
self.nlp = _nlp.tokenizer
self.fix_text = ftfy.fix_text
except ImportError:
logger.warning("ftfy or spacy is not installed using BERT BasicTokenizer instead of SpaCy & ftfy.")
self.nlp = BasicTokenizer(do_lower_case=True)
self.fix_text = None
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
merges = merges_handle.read().split("\n")[1:-1]
merges = [tuple(merge.split()) for merge in merges]
self.bpe_ranks = dict(zip(merges, range(len(merges))))
self.cache = {}
super().__init__(unk_token=unk_token, **kwargs)
@property
def do_lower_case(self):
return True
@property
def vocab_size(self):
return len(self.encoder)
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
def bpe(self, token):
word = tuple(token[:-1]) + (token[-1] + "</w>",)
if token in self.cache:
return self.cache[token]
pairs = get_pairs(word)
if not pairs:
return token + "</w>"
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
if word == "\n </w>":
word = "\n</w>"
self.cache[token] = word
return word
def _tokenize(self, text):
"""Tokenize a string."""
split_tokens = []
if self.fix_text is None:
# Using BERT's BasicTokenizer
text = self.nlp.tokenize(text)
for token in text:
split_tokens.extend(list(self.bpe(token).split(" ")))
else:
# Using SpaCy & ftfy (original tokenization process of OpenAI GPT)
text = self.nlp(text_standardize(self.fix_text(text)))
for token in text:
split_tokens.extend(list(self.bpe(token.text.lower()).split(" ")))
return split_tokens
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an id in a token (BPE) using the vocab."""
return self.decoder.get(index, self.unk_token)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
out_string = "".join(tokens).replace("</w>", " ").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
writer.write("#version: 0.2\n")
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/openai/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_openai": ["OpenAIGPTConfig"],
"tokenization_openai": ["OpenAIGPTTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_openai_fast"] = ["OpenAIGPTTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_openai"] = [
"OpenAIGPTDoubleHeadsModel",
"OpenAIGPTForSequenceClassification",
"OpenAIGPTLMHeadModel",
"OpenAIGPTModel",
"OpenAIGPTPreTrainedModel",
"load_tf_weights_in_openai_gpt",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_openai"] = [
"TFOpenAIGPTDoubleHeadsModel",
"TFOpenAIGPTForSequenceClassification",
"TFOpenAIGPTLMHeadModel",
"TFOpenAIGPTMainLayer",
"TFOpenAIGPTModel",
"TFOpenAIGPTPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_openai import OpenAIGPTConfig
from .tokenization_openai import OpenAIGPTTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_openai_fast import OpenAIGPTTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_openai import (
OpenAIGPTDoubleHeadsModel,
OpenAIGPTForSequenceClassification,
OpenAIGPTLMHeadModel,
OpenAIGPTModel,
OpenAIGPTPreTrainedModel,
load_tf_weights_in_openai_gpt,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_openai import (
TFOpenAIGPTDoubleHeadsModel,
TFOpenAIGPTForSequenceClassification,
TFOpenAIGPTLMHeadModel,
TFOpenAIGPTMainLayer,
TFOpenAIGPTModel,
TFOpenAIGPTPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/openai/modeling_openai.py | # coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch OpenAI GPT model."""
import json
import math
import os
from dataclasses import dataclass
from typing import Any, Dict, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import gelu_new, silu
from ...generation import GenerationMixin
from ...modeling_outputs import BaseModelOutput, CausalLMOutput, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel, SequenceSummary
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_conv1d_layer
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_openai import OpenAIGPTConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "openai-community/openai-gpt"
_CONFIG_FOR_DOC = "OpenAIGPTConfig"
def load_tf_weights_in_openai_gpt(model, config, openai_checkpoint_folder_path):
"""Load tf pre-trained weights in a pytorch model (from NumPy arrays here)"""
import re
import numpy as np
if ".ckpt" in openai_checkpoint_folder_path:
openai_checkpoint_folder_path = os.path.dirname(openai_checkpoint_folder_path)
logger.info(f"Loading weights from {openai_checkpoint_folder_path}")
with open(openai_checkpoint_folder_path + "/parameters_names.json", "r", encoding="utf-8") as names_handle:
names = json.load(names_handle)
with open(openai_checkpoint_folder_path + "/params_shapes.json", "r", encoding="utf-8") as shapes_handle:
shapes = json.load(shapes_handle)
offsets = np.cumsum([np.prod(shape) for shape in shapes])
init_params = [np.load(openai_checkpoint_folder_path + f"/params_{n}.npy") for n in range(10)]
init_params = np.split(np.concatenate(init_params, 0), offsets)[:-1]
init_params = [param.reshape(shape) for param, shape in zip(init_params, shapes)]
# This was used when we had a single embedding matrix for positions and tokens
# init_params[0] = np.concatenate([init_params[1], init_params[0]], 0)
# del init_params[1]
init_params = [arr.squeeze() for arr in init_params]
# Check that the token and position embeddings weight dimensions map those of the init parameters.
if model.tokens_embed.weight.shape != init_params[1].shape:
raise ValueError(
f"tokens_embed.weight.shape: {model.tokens_embed.weight.shape} does not match init_param[1].shape:"
f" {init_params[1].shape}"
)
if model.positions_embed.weight.shape != init_params[0].shape:
raise ValueError(
f"positions_embed.weight.shape: {model.positions_embed.weight.shape} does not match init_param[0].shape:"
f" {init_params[0].shape}"
)
model.tokens_embed.weight.data = torch.from_numpy(init_params[1])
model.positions_embed.weight.data = torch.from_numpy(init_params[0])
names.pop(0)
# Pop position and token embedding arrays
init_params.pop(0)
init_params.pop(0)
for name, array in zip(names, init_params): # names[1:n_transfer], init_params[1:n_transfer]):
name = name[6:] # skip "model/"
if name[-2:] != ":0":
raise ValueError(f"Layer {name} does not end with :0")
name = name[:-2]
name = name.split("/")
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+\d+", m_name):
scope_names = re.split(r"(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "g":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "b":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "w":
pointer = getattr(pointer, "weight")
else:
pointer = getattr(pointer, scope_names[0])
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
# Ensure that the pointer and array have compatible shapes.
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model
ACT_FNS = {"relu": nn.ReLU(), "silu": silu, "gelu": gelu_new, "swish": silu}
class Attention(nn.Module):
def __init__(self, nx, n_positions, config, scale=False):
super().__init__()
n_state = nx # in Attention: n_state=768 (nx=n_embd)
# [switch nx => n_state from Block to Attention to keep identical to TF implementation]
if n_state % config.n_head != 0:
raise ValueError(f"Attention n_state shape: {n_state} must be divisible by config.n_head {config.n_head}")
self.register_buffer(
"bias",
torch.tril(torch.ones(n_positions, n_positions)).view(1, 1, n_positions, n_positions),
persistent=False,
)
self.n_head = config.n_head
self.split_size = n_state
self.scale = scale
self.c_attn = Conv1D(n_state * 3, nx)
self.c_proj = Conv1D(n_state, nx)
self.attn_dropout = nn.Dropout(config.attn_pdrop)
self.resid_dropout = nn.Dropout(config.resid_pdrop)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.n_head, self.split_size // self.n_head, self.pruned_heads
)
index_attn = torch.cat([index, index + self.split_size, index + (2 * self.split_size)])
# Prune conv1d layers
self.c_attn = prune_conv1d_layer(self.c_attn, index_attn, dim=1)
self.c_proj = prune_conv1d_layer(self.c_proj, index, dim=0)
# Update hyper params
self.split_size = (self.split_size // self.n_head) * (self.n_head - len(heads))
self.n_head = self.n_head - len(heads)
self.pruned_heads = self.pruned_heads.union(heads)
def _attn(self, q, k, v, attention_mask=None, head_mask=None, output_attentions=False):
w = torch.matmul(q, k)
if self.scale:
w = w / math.sqrt(v.size(-1))
# w = w * self.bias + -1e9 * (1 - self.bias) # TF implementation method: mask_attn_weights
# XD: self.b may be larger than w, so we need to crop it
b = self.bias[:, :, : w.size(-2), : w.size(-1)]
w = w * b + -1e4 * (1 - b)
if attention_mask is not None:
# Apply the attention mask
w = w + attention_mask
w = nn.functional.softmax(w, dim=-1)
w = self.attn_dropout(w)
# Mask heads if we want to
if head_mask is not None:
w = w * head_mask
outputs = [torch.matmul(w, v)]
if output_attentions:
outputs.append(w)
return outputs
def merge_heads(self, x):
x = x.permute(0, 2, 1, 3).contiguous()
new_x_shape = x.size()[:-2] + (x.size(-2) * x.size(-1),)
return x.view(*new_x_shape) # in Tensorflow implementation: fct merge_states
def split_heads(self, x, k=False):
new_x_shape = x.size()[:-1] + (self.n_head, x.size(-1) // self.n_head)
x = x.view(*new_x_shape) # in Tensorflow implementation: fct split_states
if k:
return x.permute(0, 2, 3, 1)
else:
return x.permute(0, 2, 1, 3)
def forward(self, x, attention_mask=None, head_mask=None, output_attentions=False):
x = self.c_attn(x)
query, key, value = x.split(self.split_size, dim=2)
query = self.split_heads(query)
key = self.split_heads(key, k=True)
value = self.split_heads(value)
attn_outputs = self._attn(query, key, value, attention_mask, head_mask, output_attentions)
a = attn_outputs[0]
a = self.merge_heads(a)
a = self.c_proj(a)
a = self.resid_dropout(a)
outputs = [a] + attn_outputs[1:]
return outputs # a, (attentions)
class MLP(nn.Module):
def __init__(self, n_state, config): # in MLP: n_state=3072 (4 * n_embd)
super().__init__()
nx = config.n_embd
self.c_fc = Conv1D(n_state, nx)
self.c_proj = Conv1D(nx, n_state)
self.act = ACT_FNS[config.afn]
self.dropout = nn.Dropout(config.resid_pdrop)
def forward(self, x):
h = self.act(self.c_fc(x))
h2 = self.c_proj(h)
return self.dropout(h2)
class Block(nn.Module):
def __init__(self, n_positions, config, scale=False):
super().__init__()
nx = config.n_embd
self.attn = Attention(nx, n_positions, config, scale)
self.ln_1 = nn.LayerNorm(nx, eps=config.layer_norm_epsilon)
self.mlp = MLP(4 * nx, config)
self.ln_2 = nn.LayerNorm(nx, eps=config.layer_norm_epsilon)
def forward(self, x, attention_mask=None, head_mask=None, output_attentions=False):
attn_outputs = self.attn(
x,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
)
a = attn_outputs[0]
n = self.ln_1(x + a)
m = self.mlp(n)
h = self.ln_2(n + m)
outputs = [h] + attn_outputs[1:]
return outputs
class OpenAIGPTPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = OpenAIGPTConfig
load_tf_weights = load_tf_weights_in_openai_gpt
base_model_prefix = "transformer"
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, (nn.Linear, Conv1D)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
@dataclass
class OpenAIGPTDoubleHeadsModelOutput(ModelOutput):
"""
Base class for outputs of models predicting if two sentences are consecutive or not.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss.
mc_loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `mc_labels` is provided):
Multiple choice classification loss.
logits (`torch.FloatTensor` of shape `(batch_size, num_choices, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
mc_logits (`torch.FloatTensor` of shape `(batch_size, num_choices)`):
Prediction scores of the multiple choice classification head (scores for each choice before SoftMax).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[torch.FloatTensor] = None
mc_loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
mc_logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
OPENAI_GPT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`OpenAIGPTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
OPENAI_GPT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare OpenAI GPT transformer model outputting raw hidden-states without any specific head on top.",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTModel(OpenAIGPTPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.tokens_embed = nn.Embedding(config.vocab_size, config.n_embd)
self.positions_embed = nn.Embedding(config.n_positions, config.n_embd)
self.drop = nn.Dropout(config.embd_pdrop)
self.h = nn.ModuleList([Block(config.n_positions, config, scale=True) for _ in range(config.n_layer)])
self.register_buffer("position_ids", torch.arange(config.n_positions), persistent=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.tokens_embed
def set_input_embeddings(self, new_embeddings):
self.tokens_embed = new_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
for layer, heads in heads_to_prune.items():
self.h[layer].attn.prune_heads(heads)
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if position_ids is None:
# Code is different from when we had a single embedding matrix from position and token embeddings
position_ids = self.position_ids[None, : input_shape[-1]]
# Attention mask.
if attention_mask is not None:
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and the dtype's smallest value for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
attention_mask = attention_mask.to(dtype=next(self.parameters()).dtype) # fp16 compatibility
attention_mask = (1.0 - attention_mask) * torch.finfo(self.dtype).min
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.n_layer)
if inputs_embeds is None:
inputs_embeds = self.tokens_embed(input_ids)
position_embeds = self.positions_embed(position_ids)
if token_type_ids is not None:
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1))
token_type_embeds = self.tokens_embed(token_type_ids)
else:
token_type_embeds = 0
hidden_states = inputs_embeds + position_embeds + token_type_embeds
hidden_states = self.drop(hidden_states)
output_shape = input_shape + (hidden_states.size(-1),)
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for i, block in enumerate(self.h):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = block(hidden_states, attention_mask, head_mask[i], output_attentions=output_attentions)
hidden_states = outputs[0]
if output_attentions:
all_attentions = all_attentions + (outputs[1],)
hidden_states = hidden_states.view(*output_shape)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTLMHeadModel(OpenAIGPTPreTrainedModel, GenerationMixin):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
super().__init__(config)
self.transformer = OpenAIGPTModel(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], CausalLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-100, 0, ..., config.vocab_size]` All labels set to `-100`
are ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
lm_logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# Shift so that tokens < n predict n
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = CrossEntropyLoss()
loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
if not return_dict:
output = (lm_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutput(
loss=loss,
logits=lm_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def prepare_inputs_for_generation(self, input_ids: torch.LongTensor, **kwargs) -> Dict[str, Any]:
# Overwritten -- old model with reduced inputs
return {"input_ids": input_ids}
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling and a multiple-choice classification head on top e.g. for
RocStories/SWAG tasks. The two heads are two linear layers. The language modeling head has its weights tied to the
input embeddings, the classification head takes as input the input of a specified classification token index in the
input sequence).
""",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTDoubleHeadsModel(OpenAIGPTPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
super().__init__(config)
config.num_labels = 1
self.transformer = OpenAIGPTModel(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size, bias=False)
self.multiple_choice_head = SequenceSummary(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=OpenAIGPTDoubleHeadsModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
mc_token_ids: Optional[torch.LongTensor] = None,
labels: Optional[torch.LongTensor] = None,
mc_labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], OpenAIGPTDoubleHeadsModelOutput]:
r"""
mc_token_ids (`torch.LongTensor` of shape `(batch_size, num_choices)`, *optional*, default to index of the last token of the input):
Index of the classification token in each input sequence. Selected in the range `[0, input_ids.size(-1) -
1]`.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-1, 0, ..., config.vocab_size]` All labels set to `-100` are
ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
mc_labels (`torch.LongTensor` of shape `(batch_size)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ..., num_choices]`
where *num_choices* is the size of the second dimension of the input tensors. (see *input_ids* above)
Return:
Examples:
```python
>>> from transformers import AutoTokenizer, OpenAIGPTDoubleHeadsModel
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("openai-community/openai-gpt")
>>> model = OpenAIGPTDoubleHeadsModel.from_pretrained("openai-community/openai-gpt")
>>> tokenizer.add_special_tokens(
... {"cls_token": "[CLS]"}
... ) # Add a [CLS] to the vocabulary (we should train it also!)
>>> model.resize_token_embeddings(len(tokenizer))
>>> choices = ["Hello, my dog is cute [CLS]", "Hello, my cat is cute [CLS]"]
>>> input_ids = torch.tensor([tokenizer.encode(s) for s in choices]).unsqueeze(0) # Batch size 1, 2 choices
>>> mc_token_ids = torch.tensor([input_ids.size(-1) - 1, input_ids.size(-1) - 1]).unsqueeze(0) # Batch size 1
>>> outputs = model(input_ids, mc_token_ids=mc_token_ids)
>>> lm_logits = outputs.logits
>>> mc_logits = outputs.mc_logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
lm_logits = self.lm_head(hidden_states)
mc_logits = self.multiple_choice_head(hidden_states, mc_token_ids).squeeze(-1)
lm_loss, mc_loss = None, None
if mc_labels is not None:
loss_fct = CrossEntropyLoss()
mc_loss = loss_fct(mc_logits.view(-1, mc_logits.size(-1)), mc_labels.view(-1))
if labels is not None:
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
loss_fct = CrossEntropyLoss()
lm_loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
if not return_dict:
output = (lm_logits, mc_logits) + transformer_outputs[1:]
if mc_loss is not None:
output = (mc_loss,) + output
return ((lm_loss,) + output) if lm_loss is not None else output
return OpenAIGPTDoubleHeadsModelOutput(
loss=lm_loss,
mc_loss=mc_loss,
logits=lm_logits,
mc_logits=mc_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
The Original OpenAI GPT Model transformer with a sequence classification head on top (linear layer).
[`OpenAIGPTForSequenceClassification`] uses the last token in order to do the classification, as other causal
models (e.g. GPT-2) do. Since it does classification on the last token, it requires to know the position of the
last token. If a `pad_token_id` is defined in the configuration, it finds the last token that is not a padding
token in each row. If no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since
it cannot guess the padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take
the last value in each row of the batch).
""",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTForSequenceClassification(OpenAIGPTPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = OpenAIGPTModel(config)
self.score = nn.Linear(config.n_embd, self.num_labels, bias=False)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size, sequence_length = input_ids.shape[:2]
else:
batch_size, sequence_length = inputs_embeds.shape[:2]
# Ensure the batch size is > 1 if there is no padding.
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
logger.warning_once(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
pooled_logits = logits[range(batch_size), sequence_lengths]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(pooled_logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(pooled_logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(pooled_logits, labels)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=pooled_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mt5/modeling_flax_mt5.py | # coding=utf-8
# Copyright 2021 Mesh TensorFlow authors, T5 Authors and HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Flax mT5 model."""
import jax.numpy as jnp
from ...utils import logging
from ..t5.modeling_flax_t5 import FlaxT5EncoderModel, FlaxT5ForConditionalGeneration, FlaxT5Model
from .configuration_mt5 import MT5Config
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "T5Config"
# Copied from transformers.models.bart.modeling_flax_bart.shift_tokens_right
def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int, decoder_start_token_id: int) -> jnp.ndarray:
"""
Shift input ids one token to the right.
"""
shifted_input_ids = jnp.zeros_like(input_ids)
shifted_input_ids = shifted_input_ids.at[:, 1:].set(input_ids[:, :-1])
shifted_input_ids = shifted_input_ids.at[:, 0].set(decoder_start_token_id)
shifted_input_ids = jnp.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
return shifted_input_ids
class FlaxMT5Model(FlaxT5Model):
r"""
This class overrides [`FlaxT5Model`]. Please check the superclass for the appropriate documentation alongside usage
examples.
Examples:
```python
>>> from transformers import FlaxMT5Model, AutoTokenizer
>>> model = FlaxMT5Model.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> summary = "Weiter Verhandlung in Syrien."
>>> inputs = tokenizer(article, return_tensors="np")
>>> decoder_input_ids = tokenizer(text_target=summary, return_tensors="np").input_ids
>>> outputs = model(input_ids=inputs["input_ids"], decoder_input_ids=decoder_input_ids)
>>> hidden_states = outputs.last_hidden_state
```"""
model_type = "mt5"
config_class = MT5Config
class FlaxMT5EncoderModel(FlaxT5EncoderModel):
r"""
This class overrides [`FlaxT5EncoderModel`]. Please check the superclass for the appropriate documentation
alongside usage examples.
Examples:
```python
>>> from transformers import FlaxT5EncoderModel, AutoTokenizer
>>> model = FlaxT5EncoderModel.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> summary = "Weiter Verhandlung in Syrien."
>>> inputs = tokenizer(article, return_tensors="np")
>>> decoder_input_ids = tokenizer(text_target=summary, return_tensors="np").input_ids
>>> outputs = model(input_ids=inputs["input_ids"])
>>> hidden_states = outputs.last_hidden_state
```"""
model_type = "mt5"
config_class = MT5Config
class FlaxMT5ForConditionalGeneration(FlaxT5ForConditionalGeneration):
r"""
This class overrides [`FlaxT5ForConditionalGeneration`]. Please check the superclass for the appropriate
documentation alongside usage examples.
Examples:
```python
>>> from transformers import FlaxMT5ForConditionalGeneration, AutoTokenizer
>>> model = FlaxMT5ForConditionalGeneration.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> summary = "Weiter Verhandlung in Syrien."
>>> inputs = tokenizer(article, return_tensors="np")
>>> decoder_input_ids = tokenizer(text_target=summary, return_tensors="np").input_ids
>>> outputs = model(**inputs, decoder_input_ids=decoder_input_ids)
>>> logits = outputs.logits
```"""
model_type = "mt5"
config_class = MT5Config
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mt5/modeling_mt5.py | # coding=utf-8
# Copyright 2020 Mesh TensorFlow authors, T5 Authors and HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch mT5 model."""
import copy
import math
import os
import warnings
from typing import List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...cache_utils import Cache, DynamicCache, EncoderDecoderCache, StaticCache
from ...generation import GenerationMixin
from ...modeling_attn_mask_utils import AttentionMaskConverter
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
Seq2SeqQuestionAnsweringModelOutput,
Seq2SeqSequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
DUMMY_INPUTS,
DUMMY_MASK,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_torch_fx_proxy,
is_torchdynamo_compiling,
logging,
replace_return_docstrings,
)
from ...utils.model_parallel_utils import assert_device_map, get_device_map
from .configuration_mt5 import MT5Config
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "MT5Config"
_CHECKPOINT_FOR_DOC = "mt5-small"
####################################################
# This dict contains ids and associated url
# for the pretrained weights provided with the models
####################################################
PARALLELIZE_DOCSTRING = r"""
This is an experimental feature and is a subject to change at a moment's notice.
Uses a device map to distribute attention modules of the model across several devices. If no device map is given,
it will evenly distribute blocks across all devices.
Args:
device_map (`Dict[int, list]`, *optional*):
A dictionary that maps attention modules to devices. Note that the embedding module and LMHead are always
automatically mapped to the first device (for esoteric reasons). That means that the first device should
have fewer attention modules mapped to it than other devices. For reference, the mt5 models have the
following number of attention modules:
- mt5-small: 6
- mt5-base: 12
- mt5-large: 24
- mt5-xl: 24
- mt5-xxl: 24
Example:
```python
# Here is an example of a device map on a machine with 4 GPUs using mt5-xl, which has a total of 24 attention modules:
model = MT5ForConditionalGeneration.from_pretrained("mt5-xl")
device_map = {
0: [0, 1, 2],
1: [3, 4, 5, 6, 7, 8, 9],
2: [10, 11, 12, 13, 14, 15, 16],
3: [17, 18, 19, 20, 21, 22, 23],
}
model.parallelize(device_map)
```
"""
DEPARALLELIZE_DOCSTRING = r"""
Moves the model to cpu from a model parallel state.
Example:
```python
# On a 4 GPU machine with mt5-xl:
model = MT5ForConditionalGeneration.from_pretrained("Mt5-xl")
device_map = {
0: [0, 1, 2],
1: [3, 4, 5, 6, 7, 8, 9],
2: [10, 11, 12, 13, 14, 15, 16],
3: [17, 18, 19, 20, 21, 22, 23],
}
model.parallelize(device_map) # Splits the model across several devices
model.deparallelize() # Put the model back on cpu and cleans memory by calling torch.cuda.empty_cache()
```
"""
# Copied from transformers.models.t5.modeling_t5.T5LayerNorm with T5->MT5
class MT5LayerNorm(nn.Module):
def __init__(self, hidden_size, eps=1e-6):
"""
Construct a layernorm module in the MT5 style. No bias and no subtraction of mean.
"""
super().__init__()
self.weight = nn.Parameter(torch.ones(hidden_size))
self.variance_epsilon = eps
def forward(self, hidden_states):
# MT5 uses a layer_norm which only scales and doesn't shift, which is also known as Root Mean
# Square Layer Normalization https://arxiv.org/abs/1910.07467 thus varience is calculated
# w/o mean and there is no bias. Additionally we want to make sure that the accumulation for
# half-precision inputs is done in fp32
variance = hidden_states.to(torch.float32).pow(2).mean(-1, keepdim=True)
hidden_states = hidden_states * torch.rsqrt(variance + self.variance_epsilon)
# convert into half-precision if necessary
if self.weight.dtype in [torch.float16, torch.bfloat16]:
hidden_states = hidden_states.to(self.weight.dtype)
return self.weight * hidden_states
# Copied from transformers.models.t5.modeling_t5.T5DenseActDense with T5->MT5
class MT5DenseActDense(nn.Module):
def __init__(self, config: MT5Config):
super().__init__()
self.wi = nn.Linear(config.d_model, config.d_ff, bias=False)
self.wo = nn.Linear(config.d_ff, config.d_model, bias=False)
self.dropout = nn.Dropout(config.dropout_rate)
self.act = ACT2FN[config.dense_act_fn]
def forward(self, hidden_states):
hidden_states = self.wi(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.dropout(hidden_states)
if (
isinstance(self.wo.weight, torch.Tensor)
and hidden_states.dtype != self.wo.weight.dtype
and self.wo.weight.dtype != torch.int8
):
hidden_states = hidden_states.to(self.wo.weight.dtype)
hidden_states = self.wo(hidden_states)
return hidden_states
# Copied from transformers.models.t5.modeling_t5.T5DenseGatedActDense with T5->MT5
class MT5DenseGatedActDense(nn.Module):
def __init__(self, config: MT5Config):
super().__init__()
self.wi_0 = nn.Linear(config.d_model, config.d_ff, bias=False)
self.wi_1 = nn.Linear(config.d_model, config.d_ff, bias=False)
self.wo = nn.Linear(config.d_ff, config.d_model, bias=False)
self.dropout = nn.Dropout(config.dropout_rate)
self.act = ACT2FN[config.dense_act_fn]
def forward(self, hidden_states):
hidden_gelu = self.act(self.wi_0(hidden_states))
hidden_linear = self.wi_1(hidden_states)
hidden_states = hidden_gelu * hidden_linear
hidden_states = self.dropout(hidden_states)
# To make 8bit quantization work for google/flan-t5-xxl, self.wo is kept in float32.
# See https://github.com/huggingface/transformers/issues/20287
# we also make sure the weights are not in `int8` in case users will force `_keep_in_fp32_modules` to be `None``
if (
isinstance(self.wo.weight, torch.Tensor)
and hidden_states.dtype != self.wo.weight.dtype
and self.wo.weight.dtype != torch.int8
):
hidden_states = hidden_states.to(self.wo.weight.dtype)
hidden_states = self.wo(hidden_states)
return hidden_states
# Copied from transformers.models.t5.modeling_t5.T5LayerFF with T5->MT5
class MT5LayerFF(nn.Module):
def __init__(self, config: MT5Config):
super().__init__()
if config.is_gated_act:
self.DenseReluDense = MT5DenseGatedActDense(config)
else:
self.DenseReluDense = MT5DenseActDense(config)
self.layer_norm = MT5LayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
def forward(self, hidden_states):
forwarded_states = self.layer_norm(hidden_states)
forwarded_states = self.DenseReluDense(forwarded_states)
hidden_states = hidden_states + self.dropout(forwarded_states)
return hidden_states
# Copied from transformers.models.t5.modeling_t5.T5Attention with T5->MT5
class MT5Attention(nn.Module):
def __init__(
self,
config: MT5Config,
has_relative_attention_bias=False,
layer_idx: Optional[int] = None,
):
super().__init__()
self.is_decoder = config.is_decoder
self.has_relative_attention_bias = has_relative_attention_bias
self.relative_attention_num_buckets = config.relative_attention_num_buckets
self.relative_attention_max_distance = config.relative_attention_max_distance
self.d_model = config.d_model
self.key_value_proj_dim = config.d_kv
self.n_heads = config.num_heads
self.dropout = config.dropout_rate
self.inner_dim = self.n_heads * self.key_value_proj_dim
self.layer_idx = layer_idx
if layer_idx is None and self.is_decoder:
logger.warning_once(
f"Instantiating a decoder {self.__class__.__name__} without passing `layer_idx` is not recommended and "
"will to errors during the forward call, if caching is used. Please make sure to provide a `layer_idx` "
"when creating this class."
)
# Mesh TensorFlow initialization to avoid scaling before softmax
self.q = nn.Linear(self.d_model, self.inner_dim, bias=False)
self.k = nn.Linear(self.d_model, self.inner_dim, bias=False)
self.v = nn.Linear(self.d_model, self.inner_dim, bias=False)
self.o = nn.Linear(self.inner_dim, self.d_model, bias=False)
if self.has_relative_attention_bias:
self.relative_attention_bias = nn.Embedding(self.relative_attention_num_buckets, self.n_heads)
self.pruned_heads = set()
self.gradient_checkpointing = False
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.n_heads, self.key_value_proj_dim, self.pruned_heads
)
# Prune linear layers
self.q = prune_linear_layer(self.q, index)
self.k = prune_linear_layer(self.k, index)
self.v = prune_linear_layer(self.v, index)
self.o = prune_linear_layer(self.o, index, dim=1)
# Update hyper params
self.n_heads = self.n_heads - len(heads)
self.inner_dim = self.key_value_proj_dim * self.n_heads
self.pruned_heads = self.pruned_heads.union(heads)
@staticmethod
def _relative_position_bucket(relative_position, bidirectional=True, num_buckets=32, max_distance=128):
"""
Adapted from Mesh Tensorflow:
https://github.com/tensorflow/mesh/blob/0cb87fe07da627bf0b7e60475d59f95ed6b5be3d/mesh_tensorflow/transformer/transformer_layers.py#L593
Translate relative position to a bucket number for relative attention. The relative position is defined as
memory_position - query_position, i.e. the distance in tokens from the attending position to the attended-to
position. If bidirectional=False, then positive relative positions are invalid. We use smaller buckets for
small absolute relative_position and larger buckets for larger absolute relative_positions. All relative
positions >=max_distance map to the same bucket. All relative positions <=-max_distance map to the same bucket.
This should allow for more graceful generalization to longer sequences than the model has been trained on
Args:
relative_position: an int32 Tensor
bidirectional: a boolean - whether the attention is bidirectional
num_buckets: an integer
max_distance: an integer
Returns:
a Tensor with the same shape as relative_position, containing int32 values in the range [0, num_buckets)
"""
relative_buckets = 0
if bidirectional:
num_buckets //= 2
relative_buckets += (relative_position > 0).to(torch.long) * num_buckets
relative_position = torch.abs(relative_position)
else:
relative_position = -torch.min(relative_position, torch.zeros_like(relative_position))
# now relative_position is in the range [0, inf)
# half of the buckets are for exact increments in positions
max_exact = num_buckets // 2
is_small = relative_position < max_exact
# The other half of the buckets are for logarithmically bigger bins in positions up to max_distance
relative_position_if_large = max_exact + (
torch.log(relative_position.float() / max_exact)
/ math.log(max_distance / max_exact)
* (num_buckets - max_exact)
).to(torch.long)
relative_position_if_large = torch.min(
relative_position_if_large, torch.full_like(relative_position_if_large, num_buckets - 1)
)
relative_buckets += torch.where(is_small, relative_position, relative_position_if_large)
return relative_buckets
def compute_bias(self, query_length, key_length, device=None, cache_position=None):
"""Compute binned relative position bias"""
if device is None:
device = self.relative_attention_bias.weight.device
if cache_position is None:
context_position = torch.arange(query_length, dtype=torch.long, device=device)[:, None]
else:
context_position = cache_position[:, None].to(device)
memory_position = torch.arange(key_length, dtype=torch.long, device=device)[None, :]
relative_position = memory_position - context_position # shape (query_length, key_length)
relative_position_bucket = self._relative_position_bucket(
relative_position, # shape (query_length, key_length)
bidirectional=(not self.is_decoder),
num_buckets=self.relative_attention_num_buckets,
max_distance=self.relative_attention_max_distance,
)
values = self.relative_attention_bias(relative_position_bucket) # shape (query_length, key_length, num_heads)
values = values.permute([2, 0, 1]).unsqueeze(0) # shape (1, num_heads, query_length, key_length)
return values
def forward(
self,
hidden_states,
mask=None,
key_value_states=None,
position_bias=None,
past_key_value=None,
layer_head_mask=None,
query_length=None,
use_cache=False,
output_attentions=False,
cache_position=None,
):
"""
Self-attention (if key_value_states is None) or attention over source sentence (provided by key_value_states).
"""
# Input is (batch_size, seq_length, dim)
# Mask is (batch_size, 1, 1, key_length) (non-causal encoder) or (batch_size, 1, seq_length, key_length) (causal decoder)
batch_size, seq_length = hidden_states.shape[:2]
# if key_value_states are provided this layer is used as a cross-attention layer for the decoder
is_cross_attention = key_value_states is not None
query_states = self.q(hidden_states)
query_states = query_states.view(batch_size, -1, self.n_heads, self.key_value_proj_dim).transpose(1, 2)
if past_key_value is not None:
is_updated = past_key_value.is_updated.get(self.layer_idx)
if is_cross_attention:
# after the first generated id, we can subsequently re-use all key/value_states from cache
curr_past_key_value = past_key_value.cross_attention_cache
else:
curr_past_key_value = past_key_value.self_attention_cache
current_states = key_value_states if is_cross_attention else hidden_states
if is_cross_attention and past_key_value is not None and is_updated:
# reuse k,v, cross_attentions
key_states = curr_past_key_value.key_cache[self.layer_idx]
value_states = curr_past_key_value.value_cache[self.layer_idx]
else:
key_states = self.k(current_states)
value_states = self.v(current_states)
key_states = key_states.view(batch_size, -1, self.n_heads, self.key_value_proj_dim).transpose(1, 2)
value_states = value_states.view(batch_size, -1, self.n_heads, self.key_value_proj_dim).transpose(1, 2)
if past_key_value is not None:
# save all key/value_states to cache to be re-used for fast auto-regressive generation
cache_position = cache_position if not is_cross_attention else None
key_states, value_states = curr_past_key_value.update(
key_states, value_states, self.layer_idx, {"cache_position": cache_position}
)
# set flag that curr layer for cross-attn is already updated so we can re-use in subsequent calls
if is_cross_attention:
past_key_value.is_updated[self.layer_idx] = True
# compute scores, equivalent of torch.einsum("bnqd,bnkd->bnqk", query_states, key_states), compatible with onnx op>9
scores = torch.matmul(query_states, key_states.transpose(3, 2))
if position_bias is None:
key_length = key_states.shape[-2]
# cache position is 0-indexed so we add 1 to get the real length of queries (aka with past)
real_seq_length = query_length if query_length is not None else cache_position[-1] + 1
if not self.has_relative_attention_bias:
position_bias = torch.zeros(
(1, self.n_heads, seq_length, key_length), device=scores.device, dtype=scores.dtype
)
if self.gradient_checkpointing and self.training:
position_bias.requires_grad = True
else:
position_bias = self.compute_bias(
real_seq_length, key_length, device=scores.device, cache_position=cache_position
)
position_bias = position_bias[:, :, -seq_length:, :]
if mask is not None:
causal_mask = mask[:, :, :, : key_states.shape[-2]]
position_bias = position_bias + causal_mask
if self.pruned_heads:
mask = torch.ones(position_bias.shape[1])
mask[list(self.pruned_heads)] = 0
position_bias_masked = position_bias[:, mask.bool()]
else:
position_bias_masked = position_bias
scores += position_bias_masked
# (batch_size, n_heads, seq_length, key_length)
attn_weights = nn.functional.softmax(scores.float(), dim=-1).type_as(scores)
attn_weights = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
# Mask heads if we want to
if layer_head_mask is not None:
attn_weights = attn_weights * layer_head_mask
attn_output = torch.matmul(attn_weights, value_states)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.view(batch_size, -1, self.inner_dim)
attn_output = self.o(attn_output)
outputs = (attn_output, past_key_value, position_bias)
if output_attentions:
outputs = outputs + (attn_weights,)
return outputs
# Copied from transformers.models.t5.modeling_t5.T5LayerSelfAttention with T5->MT5
class MT5LayerSelfAttention(nn.Module):
def __init__(self, config, has_relative_attention_bias=False, layer_idx: Optional[int] = None):
super().__init__()
self.SelfAttention = MT5Attention(
config, has_relative_attention_bias=has_relative_attention_bias, layer_idx=layer_idx
)
self.layer_norm = MT5LayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
def forward(
self,
hidden_states,
attention_mask=None,
position_bias=None,
layer_head_mask=None,
past_key_value=None,
use_cache=False,
output_attentions=False,
cache_position=None,
):
normed_hidden_states = self.layer_norm(hidden_states)
attention_output = self.SelfAttention(
normed_hidden_states,
mask=attention_mask,
position_bias=position_bias,
layer_head_mask=layer_head_mask,
past_key_value=past_key_value,
use_cache=use_cache,
output_attentions=output_attentions,
cache_position=cache_position,
)
hidden_states = hidden_states + self.dropout(attention_output[0])
outputs = (hidden_states,) + attention_output[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.t5.modeling_t5.T5LayerCrossAttention with T5->MT5
class MT5LayerCrossAttention(nn.Module):
def __init__(self, config, layer_idx: Optional[int] = None):
super().__init__()
self.EncDecAttention = MT5Attention(config, has_relative_attention_bias=False, layer_idx=layer_idx)
self.layer_norm = MT5LayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
def forward(
self,
hidden_states,
key_value_states,
attention_mask=None,
position_bias=None,
layer_head_mask=None,
past_key_value=None,
use_cache=False,
query_length=None,
output_attentions=False,
cache_position=None,
):
normed_hidden_states = self.layer_norm(hidden_states)
attention_output = self.EncDecAttention(
normed_hidden_states,
mask=attention_mask,
key_value_states=key_value_states,
position_bias=position_bias,
layer_head_mask=layer_head_mask,
past_key_value=past_key_value,
use_cache=use_cache,
query_length=query_length,
output_attentions=output_attentions,
cache_position=cache_position,
)
layer_output = hidden_states + self.dropout(attention_output[0])
outputs = (layer_output,) + attention_output[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.t5.modeling_t5.T5Block with T5->MT5
class MT5Block(nn.Module):
def __init__(self, config, has_relative_attention_bias=False, layer_idx: Optional[int] = None):
super().__init__()
self.is_decoder = config.is_decoder
self.layer = nn.ModuleList()
self.layer.append(
MT5LayerSelfAttention(config, has_relative_attention_bias=has_relative_attention_bias, layer_idx=layer_idx)
)
if self.is_decoder:
self.layer.append(MT5LayerCrossAttention(config, layer_idx=layer_idx))
self.layer.append(MT5LayerFF(config))
def forward(
self,
hidden_states,
attention_mask=None,
position_bias=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
encoder_decoder_position_bias=None,
layer_head_mask=None,
cross_attn_layer_head_mask=None,
past_key_value=None,
use_cache=False,
output_attentions=False,
return_dict=True,
cache_position=None,
):
self_attention_outputs = self.layer[0](
hidden_states,
attention_mask=attention_mask,
position_bias=position_bias,
layer_head_mask=layer_head_mask,
past_key_value=past_key_value,
use_cache=use_cache,
output_attentions=output_attentions,
cache_position=cache_position,
)
hidden_states, past_key_value = self_attention_outputs[:2]
attention_outputs = self_attention_outputs[2:] # Keep self-attention outputs and relative position weights
# clamp inf values to enable fp16 training
if hidden_states.dtype == torch.float16:
clamp_value = torch.where(
torch.isinf(hidden_states).any(),
torch.finfo(hidden_states.dtype).max - 1000,
torch.finfo(hidden_states.dtype).max,
)
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
do_cross_attention = self.is_decoder and encoder_hidden_states is not None
if do_cross_attention:
cross_attention_outputs = self.layer[1](
hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
position_bias=encoder_decoder_position_bias,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=past_key_value,
query_length=cache_position[-1] + 1,
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states, past_key_value = cross_attention_outputs[:2]
# clamp inf values to enable fp16 training
if hidden_states.dtype == torch.float16:
clamp_value = torch.where(
torch.isinf(hidden_states).any(),
torch.finfo(hidden_states.dtype).max - 1000,
torch.finfo(hidden_states.dtype).max,
)
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
# Keep cross-attention outputs and relative position weights
attention_outputs = attention_outputs + cross_attention_outputs[2:]
# Apply Feed Forward layer
hidden_states = self.layer[-1](hidden_states)
# clamp inf values to enable fp16 training
if hidden_states.dtype == torch.float16:
clamp_value = torch.where(
torch.isinf(hidden_states).any(),
torch.finfo(hidden_states.dtype).max - 1000,
torch.finfo(hidden_states.dtype).max,
)
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
outputs = (hidden_states,)
if use_cache:
outputs = outputs + (past_key_value,) + attention_outputs
else:
outputs = outputs + attention_outputs
return outputs # hidden-states, past_key_value, (self-attention position bias), (self-attention weights), (cross-attention position bias), (cross-attention weights)
def load_tf_weights_in_mt5(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
tf_weights = {}
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
tf_weights[name] = array
for txt_name in names:
name = txt_name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
tf_weights.pop(txt_name, None)
continue
if "_slot_" in name[-1]:
logger.info(f"Skipping {'/'.join(name)}")
tf_weights.pop(txt_name, None)
continue
pointer = model
array = tf_weights[txt_name]
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] in ["kernel", "scale", "embedding"]:
pointer = getattr(pointer, "weight")
elif scope_names[0] == "self_attention":
pointer = getattr(pointer, "layer")
pointer = pointer[0]
elif scope_names[0] == "enc_dec_attention":
pointer = getattr(pointer, "layer")
pointer = pointer[1]
elif scope_names[0] == "dense_relu_dense":
pointer = getattr(pointer, "layer")
pointer = pointer[2]
elif scope_names[0] == "rms_norm":
if hasattr(pointer, "layer_norm"):
pointer = getattr(pointer, "layer_norm")
elif hasattr(pointer, "final_layer_norm"):
pointer = getattr(pointer, "final_layer_norm")
elif scope_names[0] == "scale":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "squad":
pointer = getattr(pointer, "classifier")
elif scope_names[0] == "decoder" and name[1] == "logits":
continue
elif scope_names[0] == "logits":
pointer = getattr(pointer, "lm_head")
elif scope_names[0] == "wi" and len(scope_names) > 1 and scope_names[1].isdigit():
pointer = getattr(pointer, f"wi_{scope_names[1]}")
continue
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if scope_names[0] not in ["kernel", "scale", "embedding"]:
pointer = getattr(pointer, "weight")
if scope_names[0] != "embedding":
logger.info(f"Transposing numpy weight of shape {array.shape} for {name}")
array = np.transpose(array)
try:
assert (
pointer.shape == array.shape
), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array.astype(np.float32))
tf_weights.pop(txt_name, None)
logger.info(f"Weights not copied to PyTorch model: {', '.join(tf_weights.keys())}.")
return model
# Copied from transformers.models.t5.modeling_t5.T5ClassificationHead with T5->MT5
class MT5ClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config: MT5Config):
super().__init__()
self.dense = nn.Linear(config.d_model, config.d_model)
self.dropout = nn.Dropout(p=config.classifier_dropout)
self.out_proj = nn.Linear(config.d_model, config.num_labels)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dropout(hidden_states)
hidden_states = self.dense(hidden_states)
hidden_states = torch.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
# Copied from transformers.models.t5.modeling_t5.T5PreTrainedModel with T5->MT5, t5->mt5
class MT5PreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = MT5Config
load_tf_weights = load_tf_weights_in_mt5
base_model_prefix = "transformer"
is_parallelizable = True
supports_gradient_checkpointing = True
_supports_quantized_cache = False # enc-dec models don't support yet
_supports_static_cache = True
_supports_cache_class = True
_no_split_modules = ["MT5Block"]
_keep_in_fp32_modules = ["wo"]
@property
def dummy_inputs(self):
input_ids = torch.tensor(DUMMY_INPUTS)
input_mask = torch.tensor(DUMMY_MASK)
dummy_inputs = {
"decoder_input_ids": input_ids,
"input_ids": input_ids,
"decoder_attention_mask": input_mask,
}
return dummy_inputs
def _init_weights(self, module):
"""Initialize the weights"""
factor = self.config.initializer_factor # Used for testing weights initialization
if isinstance(module, MT5LayerNorm):
module.weight.data.fill_(factor * 1.0)
elif isinstance(
module,
(MT5Model, MT5ForConditionalGeneration, MT5EncoderModel, MT5ForQuestionAnswering),
):
# Mesh TensorFlow embeddings initialization
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/layers.py#L1624
module.shared.weight.data.normal_(mean=0.0, std=factor * 1.0)
if hasattr(module, "lm_head") and not self.config.tie_word_embeddings:
module.lm_head.weight.data.normal_(mean=0.0, std=factor * 1.0)
if hasattr(module, "qa_outputs"):
module.qa_outputs.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
module.qa_outputs.bias.data.zero_()
elif isinstance(module, MT5ForTokenClassification):
if hasattr(module, "classifier"):
module.classifier.weight.data.normal_(mean=0.0, std=factor * 1.0)
module.classifier.bias.data.zero_()
elif isinstance(module, MT5ClassificationHead):
module.dense.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.dense, "bias") and module.dense.bias is not None:
module.dense.bias.data.zero_()
module.out_proj.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.out_proj, "bias") and module.out_proj.bias is not None:
module.out_proj.bias.data.zero_()
elif isinstance(module, MT5DenseActDense):
# Mesh TensorFlow FF initialization
# See https://github.com/tensorflow/mesh/blob/master/mesh_tensorflow/transformer/transformer_layers.py#L56
# and https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/layers.py#L89
module.wi.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.wi, "bias") and module.wi.bias is not None:
module.wi.bias.data.zero_()
module.wo.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_ff) ** -0.5))
if hasattr(module.wo, "bias") and module.wo.bias is not None:
module.wo.bias.data.zero_()
elif isinstance(module, MT5DenseGatedActDense):
module.wi_0.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.wi_0, "bias") and module.wi_0.bias is not None:
module.wi_0.bias.data.zero_()
module.wi_1.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.wi_1, "bias") and module.wi_1.bias is not None:
module.wi_1.bias.data.zero_()
module.wo.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_ff) ** -0.5))
if hasattr(module.wo, "bias") and module.wo.bias is not None:
module.wo.bias.data.zero_()
elif isinstance(module, MT5Attention):
# Mesh TensorFlow attention initialization to avoid scaling before softmax
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/transformer/attention.py#L136
d_model = self.config.d_model
key_value_proj_dim = self.config.d_kv
n_heads = self.config.num_heads
module.q.weight.data.normal_(mean=0.0, std=factor * ((d_model * key_value_proj_dim) ** -0.5))
module.k.weight.data.normal_(mean=0.0, std=factor * (d_model**-0.5))
module.v.weight.data.normal_(mean=0.0, std=factor * (d_model**-0.5))
module.o.weight.data.normal_(mean=0.0, std=factor * ((n_heads * key_value_proj_dim) ** -0.5))
if module.has_relative_attention_bias:
module.relative_attention_bias.weight.data.normal_(mean=0.0, std=factor * ((d_model) ** -0.5))
def _shift_right(self, input_ids):
decoder_start_token_id = self.config.decoder_start_token_id
pad_token_id = self.config.pad_token_id
if decoder_start_token_id is None:
raise ValueError(
"self.model.config.decoder_start_token_id has to be defined. In MT5 it is usually set to the pad_token_id. "
"See MT5 docs for more information."
)
# shift inputs to the right
if is_torch_fx_proxy(input_ids):
# Item assignment is not supported natively for proxies.
shifted_input_ids = torch.full(input_ids.shape[:-1] + (1,), decoder_start_token_id)
shifted_input_ids = torch.cat([shifted_input_ids, input_ids[..., :-1]], dim=-1)
else:
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[..., 1:] = input_ids[..., :-1].clone()
shifted_input_ids[..., 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids
# Copied from transformers.models.t5.modeling_t5.T5Stack with T5->MT5
class MT5Stack(MT5PreTrainedModel):
def __init__(self, config, embed_tokens=None):
super().__init__(config)
self.embed_tokens = embed_tokens
self.is_decoder = config.is_decoder
self.block = nn.ModuleList(
[MT5Block(config, has_relative_attention_bias=bool(i == 0), layer_idx=i) for i in range(config.num_layers)]
)
self.final_layer_norm = MT5LayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
# Initialize weights and apply final processing
self.post_init()
# Model parallel
self.model_parallel = False
self.device_map = None
self.gradient_checkpointing = False
@add_start_docstrings(PARALLELIZE_DOCSTRING)
def parallelize(self, device_map=None):
warnings.warn(
"`MT5Stack.parallelize` is deprecated and will be removed in v5 of Transformers, you should load your model"
" with `device_map='balanced'` in the call to `from_pretrained`. You can also provide your own"
" `device_map` but it needs to be a dictionary module_name to device, so for instance {'block.0': 0,"
" 'block.1': 1, ...}",
FutureWarning,
)
# Check validity of device_map
self.device_map = (
get_device_map(len(self.block), range(torch.cuda.device_count())) if device_map is None else device_map
)
assert_device_map(self.device_map, len(self.block))
self.model_parallel = True
self.first_device = "cpu" if "cpu" in self.device_map.keys() else "cuda:" + str(min(self.device_map.keys()))
self.last_device = "cuda:" + str(max(self.device_map.keys()))
# Load onto devices
for k, v in self.device_map.items():
for layer in v:
cuda_device = "cuda:" + str(k)
self.block[layer] = self.block[layer].to(cuda_device)
# Set embed_tokens to first layer
self.embed_tokens = self.embed_tokens.to(self.first_device)
# Set final layer norm to last device
self.final_layer_norm = self.final_layer_norm.to(self.last_device)
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
def deparallelize(self):
warnings.warn(
"Like `parallelize`, `deparallelize` is deprecated and will be removed in v5 of Transformers.",
FutureWarning,
)
self.model_parallel = False
self.device_map = None
self.first_device = "cpu"
self.last_device = "cpu"
for i in range(len(self.block)):
self.block[i] = self.block[i].to("cpu")
self.embed_tokens = self.embed_tokens.to("cpu")
self.final_layer_norm = self.final_layer_norm.to("cpu")
torch.cuda.empty_cache()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, new_embeddings):
self.embed_tokens = new_embeddings
def forward(
self,
input_ids=None,
attention_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
inputs_embeds=None,
head_mask=None,
cross_attn_head_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
cache_position=None,
):
# Model parallel
if self.model_parallel:
torch.cuda.set_device(self.first_device)
self.embed_tokens = self.embed_tokens.to(self.first_device)
use_cache = use_cache if use_cache is not None else self.config.use_cache
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
err_msg_prefix = "decoder_" if self.is_decoder else ""
raise ValueError(
f"You cannot specify both {err_msg_prefix}input_ids and {err_msg_prefix}inputs_embeds at the same time"
)
elif input_ids is not None:
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
err_msg_prefix = "decoder_" if self.is_decoder else ""
raise ValueError(f"You have to specify either {err_msg_prefix}input_ids or {err_msg_prefix}inputs_embeds")
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
if inputs_embeds is None:
if self.embed_tokens is None:
raise ValueError("You have to initialize the model with valid token embeddings")
inputs_embeds = self.embed_tokens(input_ids)
batch_size, seq_length = input_shape
if use_cache is True:
if not self.is_decoder:
raise ValueError(f"`use_cache` can only be set to `True` if {self} is used as a decoder")
# initialize past_key_values
return_legacy_cache = False
return_self_attention_cache = False
if self.is_decoder and (use_cache or past_key_values is not None):
if isinstance(past_key_values, Cache) and not isinstance(past_key_values, EncoderDecoderCache):
return_self_attention_cache = True
past_key_values = EncoderDecoderCache(past_key_values, DynamicCache())
elif not isinstance(past_key_values, EncoderDecoderCache):
return_legacy_cache = True
logger.warning_once(
"Passing a tuple of `past_key_values` is deprecated and will be removed in Transformers v4.48.0. "
"You should pass an instance of `EncoderDecoderCache` instead, e.g. "
"`past_key_values=EncoderDecoderCache.from_legacy_cache(past_key_values)`."
)
past_key_values = EncoderDecoderCache.from_legacy_cache(past_key_values)
elif past_key_values is None:
past_key_values = EncoderDecoderCache(DynamicCache(), DynamicCache())
elif not self.is_decoder:
# do not pass cache object down the line for encoder stack
# it messes indexing later in decoder-stack because cache object is modified in-place
past_key_values = None
past_key_values_length = past_key_values.get_seq_length() if past_key_values is not None else 0
if cache_position is None:
cache_position = torch.arange(
past_key_values_length, past_key_values_length + seq_length, device=inputs_embeds.device
)
if attention_mask is None and not is_torchdynamo_compiling():
# required mask seq length can be calculated via length of past cache
mask_seq_length = past_key_values_length + seq_length
attention_mask = torch.ones(batch_size, mask_seq_length, device=inputs_embeds.device)
if self.config.is_decoder:
causal_mask = self._update_causal_mask(
attention_mask,
inputs_embeds,
cache_position,
past_key_values.self_attention_cache if past_key_values is not None else None,
output_attentions,
)
elif attention_mask is not None:
causal_mask = attention_mask[:, None, None, :]
causal_mask = causal_mask.to(dtype=inputs_embeds.dtype)
causal_mask = (1.0 - causal_mask) * torch.finfo(inputs_embeds.dtype).min
else:
causal_mask = None
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(
encoder_hidden_shape, device=inputs_embeds.device, dtype=torch.long
)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.num_layers)
cross_attn_head_mask = self.get_head_mask(cross_attn_head_mask, self.config.num_layers)
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
all_cross_attentions = () if (output_attentions and self.is_decoder) else None
position_bias = None
encoder_decoder_position_bias = None
hidden_states = self.dropout(inputs_embeds)
for i, layer_module in enumerate(self.block):
layer_head_mask = head_mask[i]
cross_attn_layer_head_mask = cross_attn_head_mask[i]
# Model parallel
if self.model_parallel:
torch.cuda.set_device(hidden_states.device)
# Ensure that attention_mask is always on the same device as hidden_states
if causal_mask is not None:
causal_mask = causal_mask.to(hidden_states.device)
if position_bias is not None:
position_bias = position_bias.to(hidden_states.device)
if encoder_hidden_states is not None:
encoder_hidden_states = encoder_hidden_states.to(hidden_states.device)
if encoder_extended_attention_mask is not None:
encoder_extended_attention_mask = encoder_extended_attention_mask.to(hidden_states.device)
if encoder_decoder_position_bias is not None:
encoder_decoder_position_bias = encoder_decoder_position_bias.to(hidden_states.device)
if layer_head_mask is not None:
layer_head_mask = layer_head_mask.to(hidden_states.device)
if cross_attn_layer_head_mask is not None:
cross_attn_layer_head_mask = cross_attn_layer_head_mask.to(hidden_states.device)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.forward,
hidden_states,
causal_mask,
position_bias,
encoder_hidden_states,
encoder_extended_attention_mask,
encoder_decoder_position_bias,
layer_head_mask,
cross_attn_layer_head_mask,
None, # past_key_value is always None with gradient checkpointing
use_cache,
output_attentions,
return_dict,
cache_position,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask=causal_mask,
position_bias=position_bias,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
encoder_decoder_position_bias=encoder_decoder_position_bias,
layer_head_mask=layer_head_mask,
cross_attn_layer_head_mask=cross_attn_layer_head_mask,
past_key_value=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
return_dict=return_dict,
cache_position=cache_position,
)
# layer_outputs is a tuple with:
# hidden-states, key-value-states, (self-attention position bias), (self-attention weights), (cross-attention position bias), (cross-attention weights)
if use_cache is False:
layer_outputs = layer_outputs[:1] + (None,) + layer_outputs[1:]
hidden_states, next_decoder_cache = layer_outputs[:2]
# We share the position biases between the layers - the first layer store them
# layer_outputs = hidden-states, key-value-states (self-attention position bias), (self-attention weights),
# (cross-attention position bias), (cross-attention weights)
position_bias = layer_outputs[2]
if self.is_decoder and encoder_hidden_states is not None:
encoder_decoder_position_bias = layer_outputs[4 if output_attentions else 3]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[3],)
if self.is_decoder:
all_cross_attentions = all_cross_attentions + (layer_outputs[5],)
# Model Parallel: If it's the last layer for that device, put things on the next device
if self.model_parallel:
for k, v in self.device_map.items():
if i == v[-1] and "cuda:" + str(k) != self.last_device:
hidden_states = hidden_states.to("cuda:" + str(k + 1))
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.dropout(hidden_states)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if return_self_attention_cache:
next_cache = past_key_values.self_attention_cache
if return_legacy_cache:
next_cache = past_key_values.to_legacy_cache()
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_cache,
all_hidden_states,
all_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.llama.modeling_llama.LlamaModel._update_causal_mask
def _update_causal_mask(
self,
attention_mask: torch.Tensor,
input_tensor: torch.Tensor,
cache_position: torch.Tensor,
past_key_values: Cache,
output_attentions: bool,
):
if self.config._attn_implementation == "flash_attention_2":
if attention_mask is not None and 0.0 in attention_mask:
return attention_mask
return None
# For SDPA, when possible, we will rely on its `is_causal` argument instead of its `attn_mask` argument, in
# order to dispatch on Flash Attention 2. This feature is not compatible with static cache, as SDPA will fail
# to infer the attention mask.
past_seen_tokens = past_key_values.get_seq_length() if past_key_values is not None else 0
using_static_cache = isinstance(past_key_values, StaticCache)
# When output attentions is True, sdpa implementation's forward method calls the eager implementation's forward
if self.config._attn_implementation == "sdpa" and not using_static_cache and not output_attentions:
if AttentionMaskConverter._ignore_causal_mask_sdpa(
attention_mask,
inputs_embeds=input_tensor,
past_key_values_length=past_seen_tokens,
is_training=self.training,
):
return None
dtype, device = input_tensor.dtype, input_tensor.device
sequence_length = input_tensor.shape[1]
if using_static_cache:
target_length = past_key_values.get_max_cache_shape()
else:
target_length = (
attention_mask.shape[-1]
if isinstance(attention_mask, torch.Tensor)
else past_seen_tokens + sequence_length + 1
)
# In case the provided `attention` mask is 2D, we generate a causal mask here (4D).
causal_mask = self._prepare_4d_causal_attention_mask_with_cache_position(
attention_mask,
sequence_length=sequence_length,
target_length=target_length,
dtype=dtype,
device=device,
cache_position=cache_position,
batch_size=input_tensor.shape[0],
)
if (
self.config._attn_implementation == "sdpa"
and attention_mask is not None
and attention_mask.device.type == "cuda"
and not output_attentions
):
# Attend to all tokens in fully masked rows in the causal_mask, for example the relevant first rows when
# using left padding. This is required by F.scaled_dot_product_attention memory-efficient attention path.
# Details: https://github.com/pytorch/pytorch/issues/110213
min_dtype = torch.finfo(dtype).min
causal_mask = AttentionMaskConverter._unmask_unattended(causal_mask, min_dtype)
return causal_mask
@staticmethod
# Copied from transformers.models.llama.modeling_llama.LlamaPreTrainedModel._prepare_4d_causal_attention_mask_with_cache_position
def _prepare_4d_causal_attention_mask_with_cache_position(
attention_mask: torch.Tensor,
sequence_length: int,
target_length: int,
dtype: torch.dtype,
device: torch.device,
cache_position: torch.Tensor,
batch_size: int,
**kwargs,
):
"""
Creates a causal 4D mask of shape `(batch_size, 1, query_length, key_value_length)` from a 2D mask of shape
`(batch_size, key_value_length)`, or if the input `attention_mask` is already 4D, do nothing.
Args:
attention_mask (`torch.Tensor`):
A 2D attention mask of shape `(batch_size, key_value_length)` or a 4D attention mask of shape
`(batch_size, 1, query_length, key_value_length)`.
sequence_length (`int`):
The sequence length being processed.
target_length (`int`):
The target length: when generating with static cache, the mask should be as long as the static cache,
to account for the 0 padding, the part of the cache that is not filled yet.
dtype (`torch.dtype`):
The dtype to use for the 4D attention mask.
device (`torch.device`):
The device to plcae the 4D attention mask on.
cache_position (`torch.Tensor`):
Indices depicting the position of the input sequence tokens in the sequence.
batch_size (`torch.Tensor`):
Batch size.
"""
if attention_mask is not None and attention_mask.dim() == 4:
# In this case we assume that the mask comes already in inverted form and requires no inversion or slicing.
causal_mask = attention_mask
else:
min_dtype = torch.finfo(dtype).min
causal_mask = torch.full(
(sequence_length, target_length), fill_value=min_dtype, dtype=dtype, device=device
)
if sequence_length != 1:
causal_mask = torch.triu(causal_mask, diagonal=1)
causal_mask *= torch.arange(target_length, device=device) > cache_position.reshape(-1, 1)
causal_mask = causal_mask[None, None, :, :].expand(batch_size, 1, -1, -1)
if attention_mask is not None:
causal_mask = causal_mask.clone() # copy to contiguous memory for in-place edit
mask_length = attention_mask.shape[-1]
padding_mask = causal_mask[:, :, :, :mask_length] + attention_mask[:, None, None, :]
padding_mask = padding_mask == 0
causal_mask[:, :, :, :mask_length] = causal_mask[:, :, :, :mask_length].masked_fill(
padding_mask, min_dtype
)
return causal_mask
MT5_START_DOCSTRING = r"""
The MT5 model was proposed in [Exploring the Limits of Transfer Learning with a Unified Text-to-Text
Transformer](https://arxiv.org/abs/1910.10683) by Colin Raffel, Noam Shazeer, Adam Roberts, Katherine Lee, Sharan
Narang, Michael Matena, Yanqi Zhou, Wei Li, Peter J. Liu. It's an encoder decoder transformer pre-trained in a
text-to-text denoising generative setting.
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`MT5Config`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
MT5_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. MT5 is a model with relative position embeddings so you
should be able to pad the inputs on both the right and the left.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for detail.
[What are input IDs?](../glossary#input-ids)
To know more on how to prepare `input_ids` for pretraining take a look a [MT5 Training](./mt5#training).
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
MT5 uses the `pad_token_id` as the starting token for `decoder_input_ids` generation. If `past_key_values`
is used, optionally only the last `decoder_input_ids` have to be input (see `past_key_values`).
To know more on how to prepare `decoder_input_ids` for pretraining take a look at [MT5
Training](./mt5#training).
decoder_attention_mask (`torch.BoolTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules in the encoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules in the decoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder. Mask values selected in
`[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*):
Tuple consists of (`last_hidden_state`, `optional`: *hidden_states*, `optional`: *attentions*)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)` is a sequence of hidden states at
the output of the last layer of the encoder. Used in the cross-attention of the decoder.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
decoder_inputs_embeds (`torch.FloatTensor` of shape `(batch_size, target_sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `decoder_input_ids` you can choose to directly pass an embedded
representation. If `past_key_values` is used, optionally only the last `decoder_inputs_embeds` have to be
input (see `past_key_values`). This is useful if you want more control over how to convert
`decoder_input_ids` indices into associated vectors than the model's internal embedding lookup matrix.
If `decoder_input_ids` and `decoder_inputs_embeds` are both unset, `decoder_inputs_embeds` takes the value
of `inputs_embeds`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
MT5_ENCODER_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. MT5 is a model with relative position embeddings so you
should be able to pad the inputs on both the right and the left.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for detail.
To know more on how to prepare `input_ids` for pretraining take a look a [MT5 Training](./mt5#training).
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Warning message for FutureWarning: head_mask was separated into two input args - head_mask, decoder_head_mask
__HEAD_MASK_WARNING_MSG = """
The input argument `head_mask` was split into two arguments `head_mask` and `decoder_head_mask`. Currently,
`decoder_head_mask` is set to copy `head_mask`, but this feature is deprecated and will be removed in future versions.
If you do not want to use any `decoder_head_mask` now, please set `decoder_head_mask = torch.ones(num_layers,
num_heads)`.
"""
@add_start_docstrings(
"The bare MT5 Model transformer outputting raw hidden-states without any specific head on top.",
MT5_START_DOCSTRING,
)
class MT5Model(MT5PreTrainedModel):
r"""
Examples:
```python
>>> from transformers import MT5Model, AutoTokenizer
>>> model = MT5Model.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> summary = "Weiter Verhandlung in Syrien."
>>> inputs = tokenizer(article, return_tensors="pt")
>>> labels = tokenizer(text_target=summary, return_tensors="pt")
>>> outputs = model(input_ids=inputs["input_ids"], decoder_input_ids=labels["input_ids"])
>>> hidden_states = outputs.last_hidden_state
```"""
model_type = "mt5"
config_class = MT5Config
_keys_to_ignore_on_load_unexpected = ["decoder.block.0.layer.1.EncDecAttention.relative_attention_bias.weight"]
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight"]
# Copied from transformers.models.t5.modeling_t5.T5Model.__init__ with T5->MT5
def __init__(self, config: MT5Config):
super().__init__(config)
self.shared = nn.Embedding(config.vocab_size, config.d_model)
encoder_config = copy.deepcopy(config)
encoder_config.is_decoder = False
encoder_config.use_cache = False
encoder_config.is_encoder_decoder = False
self.encoder = MT5Stack(encoder_config, self.shared)
decoder_config = copy.deepcopy(config)
decoder_config.is_decoder = True
decoder_config.is_encoder_decoder = False
decoder_config.num_layers = config.num_decoder_layers
self.decoder = MT5Stack(decoder_config, self.shared)
# Initialize weights and apply final processing
self.post_init()
# Model parallel
self.model_parallel = False
self.device_map = None
@add_start_docstrings(PARALLELIZE_DOCSTRING)
# Copied from transformers.models.t5.modeling_t5.T5Model.parallelize
def parallelize(self, device_map=None):
warnings.warn(
"`T5Model.parallelize` is deprecated and will be removed in v5 of Transformers, you should load your model"
" with `device_map='balanced'` in the call to `from_pretrained`. You can also provide your own"
" `device_map` but it needs to be a dictionary module_name to device, so for instance {'encoder.block.0':"
" 0, 'encoder.block.1': 1, ...}",
FutureWarning,
)
self.device_map = (
get_device_map(len(self.encoder.block), range(torch.cuda.device_count()))
if device_map is None
else device_map
)
assert_device_map(self.device_map, len(self.encoder.block))
self.encoder.parallelize(self.device_map)
self.decoder.parallelize(self.device_map)
self.model_parallel = True
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
# Copied from transformers.models.t5.modeling_t5.T5Model.deparallelize
def deparallelize(self):
warnings.warn(
"Like `parallelize`, `deparallelize` is deprecated and will be removed in v5 of Transformers.",
FutureWarning,
)
self.encoder.deparallelize()
self.decoder.deparallelize()
self.encoder = self.encoder.to("cpu")
self.decoder = self.decoder.to("cpu")
self.model_parallel = False
self.device_map = None
torch.cuda.empty_cache()
# Copied from transformers.models.t5.modeling_t5.T5Model.get_input_embeddings
def get_input_embeddings(self):
return self.shared
# Copied from transformers.models.t5.modeling_t5.T5Model.set_input_embeddings
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.set_input_embeddings(new_embeddings)
self.decoder.set_input_embeddings(new_embeddings)
# Copied from transformers.models.t5.modeling_t5.T5Model.get_encoder
def get_encoder(self):
return self.encoder
# Copied from transformers.models.t5.modeling_t5.T5Model.get_decoder
def get_decoder(self):
return self.decoder
# Copied from transformers.models.t5.modeling_t5.T5Model._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(MT5_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqModelOutput, config_class=_CONFIG_FOR_DOC)
# Copied from transformers.models.t5.modeling_t5.T5Model.forward with google-t5/->google/, T5->MT5, t5->mt5
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
decoder_head_mask: Optional[torch.FloatTensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.Tensor] = None,
decoder_inputs_embeds: Optional[torch.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
) -> Union[Tuple[torch.FloatTensor], Seq2SeqModelOutput]:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, MT5Model
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> model = MT5Model.from_pretrained("google/mt5-small")
>>> input_ids = tokenizer(
... "Studies have been shown that owning a dog is good for you", return_tensors="pt"
... ).input_ids # Batch size 1
>>> decoder_input_ids = tokenizer("Studies show that", return_tensors="pt").input_ids # Batch size 1
>>> # preprocess: Prepend decoder_input_ids with start token which is pad token for MT5Model.
>>> # This is not needed for torch's MT5ForConditionalGeneration as it does this internally using labels arg.
>>> decoder_input_ids = model._shift_right(decoder_input_ids)
>>> # forward pass
>>> outputs = model(input_ids=input_ids, decoder_input_ids=decoder_input_ids)
>>> last_hidden_states = outputs.last_hidden_state
```"""
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# FutureWarning: head_mask was separated into two input args - head_mask, decoder_head_mask
if head_mask is not None and decoder_head_mask is None:
if self.config.num_layers == self.config.num_decoder_layers:
warnings.warn(__HEAD_MASK_WARNING_MSG, FutureWarning)
decoder_head_mask = head_mask
# Encode if needed (training, first prediction pass)
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
hidden_states = encoder_outputs[0]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.decoder.first_device)
hidden_states = hidden_states.to(self.decoder.first_device)
if decoder_input_ids is not None:
decoder_input_ids = decoder_input_ids.to(self.decoder.first_device)
if attention_mask is not None:
attention_mask = attention_mask.to(self.decoder.first_device)
if decoder_attention_mask is not None:
decoder_attention_mask = decoder_attention_mask.to(self.decoder.first_device)
# Decode
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
inputs_embeds=decoder_inputs_embeds,
past_key_values=past_key_values,
encoder_hidden_states=hidden_states,
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
cache_position=cache_position,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return Seq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
@add_start_docstrings("""MT5 Model with a `language modeling` head on top.""", MT5_START_DOCSTRING)
class MT5ForConditionalGeneration(MT5PreTrainedModel, GenerationMixin):
r"""
Examples:
```python
>>> from transformers import MT5ForConditionalGeneration, AutoTokenizer
>>> model = MT5ForConditionalGeneration.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> summary = "Weiter Verhandlung in Syrien."
>>> inputs = tokenizer(article, text_target=summary, return_tensors="pt")
>>> outputs = model(**inputs)
>>> loss = outputs.loss
```"""
model_type = "mt5"
config_class = MT5Config
_keys_to_ignore_on_load_unexpected = ["decoder.block.0.layer.1.EncDecAttention.relative_attention_bias.weight"]
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight", "lm_head.weight"]
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.__init__ with T5->MT5
def __init__(self, config: MT5Config):
super().__init__(config)
self.model_dim = config.d_model
self.shared = nn.Embedding(config.vocab_size, config.d_model)
encoder_config = copy.deepcopy(config)
encoder_config.is_decoder = False
encoder_config.use_cache = False
encoder_config.is_encoder_decoder = False
self.encoder = MT5Stack(encoder_config, self.shared)
decoder_config = copy.deepcopy(config)
decoder_config.is_decoder = True
decoder_config.is_encoder_decoder = False
decoder_config.num_layers = config.num_decoder_layers
self.decoder = MT5Stack(decoder_config, self.shared)
self.lm_head = nn.Linear(config.d_model, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
# Model parallel
self.model_parallel = False
self.device_map = None
@add_start_docstrings(PARALLELIZE_DOCSTRING)
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.parallelize
def parallelize(self, device_map=None):
warnings.warn(
"`T5ForConditionalGeneration.parallelize` is deprecated and will be removed in v5 of Transformers, you"
" should load your model with `device_map='balanced'` in the call to `from_pretrained`. You can also"
" provide your own `device_map` but it needs to be a dictionary module_name to device, so for instance"
" {'encoder.block.0': 0, 'encoder.block.1': 1, ...}",
FutureWarning,
)
self.device_map = (
get_device_map(len(self.encoder.block), range(torch.cuda.device_count()))
if device_map is None
else device_map
)
assert_device_map(self.device_map, len(self.encoder.block))
self.encoder.parallelize(self.device_map)
self.decoder.parallelize(self.device_map)
self.lm_head = self.lm_head.to(self.decoder.first_device)
self.model_parallel = True
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.deparallelize
def deparallelize(self):
warnings.warn(
"Like `parallelize`, `deparallelize` is deprecated and will be removed in v5 of Transformers.",
FutureWarning,
)
self.encoder.deparallelize()
self.decoder.deparallelize()
self.encoder = self.encoder.to("cpu")
self.decoder = self.decoder.to("cpu")
self.lm_head = self.lm_head.to("cpu")
self.model_parallel = False
self.device_map = None
torch.cuda.empty_cache()
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.get_input_embeddings
def get_input_embeddings(self):
return self.shared
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.set_input_embeddings
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.set_input_embeddings(new_embeddings)
self.decoder.set_input_embeddings(new_embeddings)
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.set_output_embeddings
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.get_output_embeddings
def get_output_embeddings(self):
return self.lm_head
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.get_encoder
def get_encoder(self):
return self.encoder
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.get_decoder
def get_decoder(self):
return self.decoder
@add_start_docstrings_to_model_forward(MT5_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.forward with google-t5/->google/, T5->MT5, t5->mt5
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
decoder_head_mask: Optional[torch.FloatTensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.Tensor]]] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
) -> Union[Tuple[torch.FloatTensor], Seq2SeqLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[-100, 0, ...,
config.vocab_size - 1]`. All labels set to `-100` are ignored (masked), the loss is only computed for
labels in `[0, ..., config.vocab_size]`
Returns:
Examples:
```python
>>> from transformers import AutoTokenizer, MT5ForConditionalGeneration
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> model = MT5ForConditionalGeneration.from_pretrained("google/mt5-small")
>>> # training
>>> input_ids = tokenizer("The <extra_id_0> walks in <extra_id_1> park", return_tensors="pt").input_ids
>>> labels = tokenizer("<extra_id_0> cute dog <extra_id_1> the <extra_id_2>", return_tensors="pt").input_ids
>>> outputs = model(input_ids=input_ids, labels=labels)
>>> loss = outputs.loss
>>> logits = outputs.logits
>>> # inference
>>> input_ids = tokenizer(
... "summarize: studies have shown that owning a dog is good for you", return_tensors="pt"
... ).input_ids # Batch size 1
>>> outputs = model.generate(input_ids)
>>> print(tokenizer.decode(outputs[0], skip_special_tokens=True))
>>> # studies have shown that owning a dog is good for you.
```"""
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# FutureWarning: head_mask was separated into two input args - head_mask, decoder_head_mask
if head_mask is not None and decoder_head_mask is None:
if self.config.num_layers == self.config.num_decoder_layers:
warnings.warn(__HEAD_MASK_WARNING_MSG, FutureWarning)
decoder_head_mask = head_mask
# Encode if needed (training, first prediction pass)
if encoder_outputs is None:
# Convert encoder inputs in embeddings if needed
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
hidden_states = encoder_outputs[0]
if self.model_parallel:
torch.cuda.set_device(self.decoder.first_device)
if labels is not None and decoder_input_ids is None and decoder_inputs_embeds is None:
# get decoder inputs from shifting lm labels to the right
decoder_input_ids = self._shift_right(labels)
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.decoder.first_device)
hidden_states = hidden_states.to(self.decoder.first_device)
if decoder_input_ids is not None:
decoder_input_ids = decoder_input_ids.to(self.decoder.first_device)
if attention_mask is not None:
attention_mask = attention_mask.to(self.decoder.first_device)
if decoder_attention_mask is not None:
decoder_attention_mask = decoder_attention_mask.to(self.decoder.first_device)
# Decode
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
inputs_embeds=decoder_inputs_embeds,
past_key_values=past_key_values,
encoder_hidden_states=hidden_states,
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
cache_position=cache_position,
)
sequence_output = decoder_outputs[0]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.encoder.first_device)
self.lm_head = self.lm_head.to(self.encoder.first_device)
sequence_output = sequence_output.to(self.lm_head.weight.device)
if self.config.tie_word_embeddings:
# Rescale output before projecting on vocab
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/transformer/transformer.py#L586
sequence_output = sequence_output * (self.model_dim**-0.5)
lm_logits = self.lm_head(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss(ignore_index=-100)
# move labels to correct device to enable PP
labels = labels.to(lm_logits.device)
loss = loss_fct(lm_logits.view(-1, lm_logits.size(-1)), labels.view(-1))
# TODO(thom): Add z_loss https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/layers.py#L666
if not return_dict:
output = (lm_logits,) + decoder_outputs[1:] + encoder_outputs
return ((loss,) + output) if loss is not None else output
return Seq2SeqLMOutput(
loss=loss,
logits=lm_logits,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration.prepare_decoder_input_ids_from_labels
def prepare_decoder_input_ids_from_labels(self, labels: torch.Tensor):
return self._shift_right(labels)
# Copied from transformers.models.t5.modeling_t5.T5ForConditionalGeneration._reorder_cache
def _reorder_cache(self, past_key_values, beam_idx):
# if decoder past is not included in output
# speedy decoding is disabled and no need to reorder
if past_key_values is None:
logger.warning("You might want to consider setting `use_cache=True` to speed up decoding")
return past_key_values
reordered_decoder_past = ()
for layer_past_states in past_key_values:
# get the correct batch idx from layer past batch dim
# batch dim of `past` is at 2nd position
reordered_layer_past_states = ()
for layer_past_state in layer_past_states:
# need to set correct `past` for each of the four key / value states
reordered_layer_past_states = reordered_layer_past_states + (
layer_past_state.index_select(0, beam_idx.to(layer_past_state.device)),
)
if reordered_layer_past_states[0].shape != layer_past_states[0].shape:
raise ValueError(
f"reordered_layer_past_states[0] shape {reordered_layer_past_states[0].shape} and layer_past_states[0] shape {layer_past_states[0].shape} mismatched"
)
if len(reordered_layer_past_states) != len(layer_past_states):
raise ValueError(
f"length of reordered_layer_past_states {len(reordered_layer_past_states)} and length of layer_past_states {len(layer_past_states)} mismatched"
)
reordered_decoder_past = reordered_decoder_past + (reordered_layer_past_states,)
return reordered_decoder_past
@add_start_docstrings(
"The bare MT5 Model transformer outputting encoder's raw hidden-states without any specific head on top.",
MT5_START_DOCSTRING,
)
class MT5EncoderModel(MT5PreTrainedModel):
r"""
Examples:
```python
>>> from transformers import MT5EncoderModel, AutoTokenizer
>>> model = MT5EncoderModel.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> input_ids = tokenizer(article, return_tensors="pt").input_ids
>>> outputs = model(input_ids)
>>> hidden_state = outputs.last_hidden_state
```"""
model_type = "mt5"
config_class = MT5Config
_tied_weights_keys = ["encoder.embed_tokens.weight"]
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel.__init__ with T5->MT5
def __init__(self, config: MT5Config):
super().__init__(config)
self.shared = nn.Embedding(config.vocab_size, config.d_model)
encoder_config = copy.deepcopy(config)
encoder_config.use_cache = False
encoder_config.is_encoder_decoder = False
self.encoder = MT5Stack(encoder_config, self.shared)
# Initialize weights and apply final processing
self.post_init()
# Model parallel
self.model_parallel = False
self.device_map = None
@add_start_docstrings(PARALLELIZE_DOCSTRING)
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel.parallelize
def parallelize(self, device_map=None):
warnings.warn(
"`T5EncoderModel.parallelize` is deprecated and will be removed in v5 of Transformers, you should load"
" your model with `device_map='balanced'` in the call to `from_pretrained`. You can also provide your own"
" `device_map` but it needs to be a dictionary module_name to device, so for instance {'block.0': 0,"
" 'block.1': 1, ...}",
FutureWarning,
)
self.device_map = (
get_device_map(len(self.encoder.block), range(torch.cuda.device_count()))
if device_map is None
else device_map
)
assert_device_map(self.device_map, len(self.encoder.block))
self.encoder.parallelize(self.device_map)
self.model_parallel = True
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel.deparallelize
def deparallelize(self):
warnings.warn(
"Like `parallelize`, `deparallelize` is deprecated and will be removed in v5 of Transformers.",
FutureWarning,
)
self.encoder.deparallelize()
self.encoder = self.encoder.to("cpu")
self.model_parallel = False
self.device_map = None
torch.cuda.empty_cache()
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel.get_input_embeddings
def get_input_embeddings(self):
return self.shared
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel.set_input_embeddings
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.set_input_embeddings(new_embeddings)
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel.get_encoder
def get_encoder(self):
return self.encoder
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.block[layer].layer[0].SelfAttention.prune_heads(heads)
@add_start_docstrings_to_model_forward(MT5_ENCODER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutput, config_class=_CONFIG_FOR_DOC)
# Copied from transformers.models.t5.modeling_t5.T5EncoderModel.forward with google-t5/->google/, T5->MT5, t5->mt5
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], BaseModelOutput]:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, MT5EncoderModel
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> model = MT5EncoderModel.from_pretrained("google/mt5-small")
>>> input_ids = tokenizer(
... "Studies have been shown that owning a dog is good for you", return_tensors="pt"
... ).input_ids # Batch size 1
>>> outputs = model(input_ids=input_ids)
>>> last_hidden_states = outputs.last_hidden_state
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
return encoder_outputs
@add_start_docstrings(
"""
MT5 model with a sequence classification/head on top (a linear layer on top of the pooled output) e.g. for GLUE
tasks.
""",
MT5_START_DOCSTRING,
)
class MT5ForSequenceClassification(MT5PreTrainedModel):
_keys_to_ignore_on_load_unexpected = ["decoder.block.0.layer.1.EncDecAttention.relative_attention_bias.weight"]
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight"]
# Copied from transformers.models.t5.modeling_t5.T5ForSequenceClassification.__init__ with T5->MT5
def __init__(self, config: MT5Config):
super().__init__(config)
self.transformer = MT5Model(config)
self.classification_head = MT5ClassificationHead(config)
# Initialize weights and apply final processing
self.post_init()
self.model_parallel = False
@add_start_docstrings_to_model_forward(MT5_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqSequenceClassifierOutput, config_class=_CONFIG_FOR_DOC)
# Copied from transformers.models.t5.modeling_t5.T5ForSequenceClassification.forward
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, Seq2SeqSequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
if input_ids is None and inputs_embeds is not None:
raise NotImplementedError(
f"Passing input embeddings is currently not supported for {self.__class__.__name__}"
)
# Copied from models.bart.modeling_bart.BartModel.forward different to other models, T5 automatically creates
# decoder_input_ids from input_ids if no decoder_input_ids are provided
if decoder_input_ids is None and decoder_inputs_embeds is None:
if input_ids is None:
raise ValueError(
"If no `decoder_input_ids` or `decoder_inputs_embeds` are "
"passed, `input_ids` cannot be `None`. Please pass either "
"`input_ids` or `decoder_input_ids` or `decoder_inputs_embeds`."
)
decoder_input_ids = self._shift_right(input_ids)
outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
eos_mask = input_ids.eq(self.config.eos_token_id).to(sequence_output.device)
if len(torch.unique_consecutive(eos_mask.sum(1))) > 1:
raise ValueError("All examples must have the same number of <eos> tokens.")
batch_size, _, hidden_size = sequence_output.shape
sentence_representation = sequence_output[eos_mask, :].view(batch_size, -1, hidden_size)[:, -1, :]
logits = self.classification_head(sentence_representation)
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.config.num_labels == 1:
self.config.problem_type = "regression"
elif self.config.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.config.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return Seq2SeqSequenceClassifierOutput(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"""
MT5 Encoder Model with a token classification head on top (a linear layer on top of the hidden-states output)
e.g. for Named-Entity-Recognition (NER) tasks.
""",
MT5_START_DOCSTRING,
)
class MT5ForTokenClassification(MT5PreTrainedModel):
_tied_weights_keys = ["transformer.encoder.embed_tokens.weight"]
# Copied from transformers.models.t5.modeling_t5.T5ForTokenClassification.__init__ with T5->MT5
def __init__(self, config: MT5Config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = MT5EncoderModel(config)
self.dropout = nn.Dropout(config.classifier_dropout)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(MT5_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TokenClassifierOutput, config_class=_CONFIG_FOR_DOC)
# Copied from transformers.models.t5.modeling_t5.T5ForTokenClassification.forward with T5->MT5
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states)
logits = self.classifier(hidden_states)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits, outputs[2:-1])
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
MT5 Model with a span classification head on top for extractive question-answering tasks like SQuAD (linear layers
on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
MT5_START_DOCSTRING,
)
class MT5ForQuestionAnswering(MT5PreTrainedModel):
_keys_to_ignore_on_load_unexpected = ["decoder.block.0.layer.1.EncDecAttention.relative_attention_bias.weight"]
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight"]
# Copied from transformers.models.t5.modeling_t5.T5ForQuestionAnswering.__init__ with T5->MT5
def __init__(self, config: MT5Config):
super().__init__(config)
self.model_dim = config.d_model
self.shared = nn.Embedding(config.vocab_size, config.d_model)
encoder_config = copy.deepcopy(config)
encoder_config.is_decoder = False
encoder_config.use_cache = False
encoder_config.is_encoder_decoder = False
self.encoder = MT5Stack(encoder_config, self.shared)
decoder_config = copy.deepcopy(config)
decoder_config.is_decoder = True
decoder_config.is_encoder_decoder = False
decoder_config.num_layers = config.num_decoder_layers
self.decoder = MT5Stack(decoder_config, self.shared)
self.num_labels = config.num_labels
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
self.model_parallel = False
# Copied from transformers.models.t5.modeling_t5.T5ForQuestionAnswering.get_input_embeddings
def get_input_embeddings(self):
return self.shared
# Copied from transformers.models.t5.modeling_t5.T5ForQuestionAnswering.set_input_embeddings
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.set_input_embeddings(new_embeddings)
self.decoder.set_input_embeddings(new_embeddings)
# Copied from transformers.models.t5.modeling_t5.T5ForQuestionAnswering.get_encoder
def get_encoder(self):
return self.encoder
# Copied from transformers.models.t5.modeling_t5.T5ForQuestionAnswering.get_decoder
def get_decoder(self):
return self.decoder
@add_start_docstrings_to_model_forward(MT5_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqQuestionAnsweringModelOutput, config_class=_CONFIG_FOR_DOC)
# Copied from transformers.models.t5.modeling_t5.T5ForQuestionAnswering.forward
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
decoder_head_mask: Optional[torch.FloatTensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.Tensor]]] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], Seq2SeqQuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (*sequence_length*). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (*sequence_length*). Position outside of the sequence
are not taken into account for computing the loss.
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
use_cache = use_cache if use_cache is not None else self.config.use_cache
if start_positions is not None and end_positions is not None:
use_cache = False
# Copied from models.bart.modeling_bart.BartModel.forward
# different to other models, T5 automatically creates decoder_input_ids from
# input_ids if no decoder_input_ids are provided
if decoder_input_ids is None and decoder_inputs_embeds is None:
if input_ids is None:
raise ValueError(
"If no `decoder_input_ids` or `decoder_inputs_embeds` are "
"passed, `input_ids` cannot be `None`. Please pass either "
"`input_ids` or `decoder_input_ids` or `decoder_inputs_embeds`."
)
decoder_input_ids = self._shift_right(input_ids)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# FutureWarning: head_mask was separated into two input args - head_mask, decoder_head_mask
if head_mask is not None and decoder_head_mask is None:
if self.config.num_layers == self.config.num_decoder_layers:
warnings.warn(__HEAD_MASK_WARNING_MSG, FutureWarning)
decoder_head_mask = head_mask
# Encode if needed (training, first prediction pass)
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
hidden_states = encoder_outputs[0]
# Decode
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
inputs_embeds=decoder_inputs_embeds,
past_key_values=None,
encoder_hidden_states=hidden_states,
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = decoder_outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1).to(start_logits.device)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1).to(end_logits.device)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + decoder_outputs[1:] + encoder_outputs
return ((total_loss,) + output) if total_loss is not None else output
return Seq2SeqQuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mt5/configuration_mt5.py | # coding=utf-8
# Copyright 2020, The T5 Authors and HuggingFace Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""mT5 model configuration"""
from typing import Mapping
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxSeq2SeqConfigWithPast
from ...utils import logging
logger = logging.get_logger(__name__)
class MT5Config(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`MT5Model`] or a [`TFMT5Model`]. It is used to
instantiate a mT5 model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the mT5
[google/mt5-small](https://huggingface.co/google/mt5-small) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Arguments:
vocab_size (`int`, *optional*, defaults to 250112):
Vocabulary size of the T5 model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`T5Model`] or [`TFT5Model`].
d_model (`int`, *optional*, defaults to 512):
Size of the encoder layers and the pooler layer.
d_kv (`int`, *optional*, defaults to 64):
Size of the key, query, value projections per attention head. In the conventional context, it is typically expected that `d_kv` has to be equal to `d_model // num_heads`.
But in the architecture of mt5-small, `d_kv` is not equal to `d_model //num_heads`. The `inner_dim` of the projection layer will be defined as `num_heads * d_kv`.
d_ff (`int`, *optional*, defaults to 1024):
Size of the intermediate feed forward layer in each `T5Block`.
num_layers (`int`, *optional*, defaults to 8):
Number of hidden layers in the Transformer encoder.
num_decoder_layers (`int`, *optional*):
Number of hidden layers in the Transformer decoder. Will use the same value as `num_layers` if not set.
num_heads (`int`, *optional*, defaults to 6):
Number of attention heads for each attention layer in the Transformer encoder.
relative_attention_num_buckets (`int`, *optional*, defaults to 32):
The number of buckets to use for each attention layer.
relative_attention_max_distance (`int`, *optional*, defaults to 128):
The maximum distance of the longer sequences for the bucket separation.
dropout_rate (`float`, *optional*, defaults to 0.1):
The ratio for all dropout layers.
classifier_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for classifier.
layer_norm_eps (`float`, *optional*, defaults to 1e-6):
The epsilon used by the layer normalization layers.
initializer_factor (`float`, *optional*, defaults to 1):
A factor for initializing all weight matrices (should be kept to 1, used internally for initialization
testing).
feed_forward_proj (`string`, *optional*, defaults to `"gated-gelu"`):
Type of feed forward layer to be used. Should be one of `"relu"` or `"gated-gelu"`.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
"""
model_type = "mt5"
keys_to_ignore_at_inference = ["past_key_values"]
attribute_map = {
"hidden_size": "d_model",
"num_attention_heads": "num_heads",
"num_hidden_layers": "num_layers",
"head_dim": "d_kv",
}
def __init__(
self,
vocab_size=250112,
d_model=512,
d_kv=64,
d_ff=1024,
num_layers=8,
num_decoder_layers=None,
num_heads=6,
relative_attention_num_buckets=32,
relative_attention_max_distance=128,
dropout_rate=0.1,
layer_norm_epsilon=1e-6,
initializer_factor=1.0,
feed_forward_proj="gated-gelu",
is_encoder_decoder=True,
use_cache=True,
tokenizer_class="T5Tokenizer",
tie_word_embeddings=False,
pad_token_id=0,
eos_token_id=1,
decoder_start_token_id=0,
classifier_dropout=0.0,
**kwargs,
):
self.vocab_size = vocab_size
self.d_model = d_model
self.d_kv = d_kv
self.d_ff = d_ff
self.num_layers = num_layers
self.num_decoder_layers = (
num_decoder_layers if num_decoder_layers is not None else self.num_layers
) # default = symmetry
self.num_heads = num_heads
self.relative_attention_num_buckets = relative_attention_num_buckets
self.relative_attention_max_distance = relative_attention_max_distance
self.dropout_rate = dropout_rate
self.classifier_dropout = classifier_dropout
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_factor = initializer_factor
self.feed_forward_proj = feed_forward_proj
self.use_cache = use_cache
act_info = self.feed_forward_proj.split("-")
self.dense_act_fn = act_info[-1]
self.is_gated_act = act_info[0] == "gated"
if len(act_info) > 1 and act_info[0] != "gated" or len(act_info) > 2:
raise ValueError(
f"`feed_forward_proj`: {feed_forward_proj} is not a valid activation function of the dense layer. "
"Please make sure `feed_forward_proj` is of the format `gated-{ACT_FN}` or `{ACT_FN}`, e.g. "
"'gated-gelu' or 'relu'"
)
# for backwards compatibility
if feed_forward_proj == "gated-gelu":
self.dense_act_fn = "gelu_new"
super().__init__(
is_encoder_decoder=is_encoder_decoder,
tokenizer_class=tokenizer_class,
tie_word_embeddings=tie_word_embeddings,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
decoder_start_token_id=decoder_start_token_id,
**kwargs,
)
class MT5OnnxConfig(OnnxSeq2SeqConfigWithPast):
@property
# Copied from transformers.models.t5.configuration_t5.T5OnnxConfig.inputs
def inputs(self) -> Mapping[str, Mapping[int, str]]:
common_inputs = {
"input_ids": {0: "batch", 1: "encoder_sequence"},
"attention_mask": {0: "batch", 1: "encoder_sequence"},
}
if self.use_past:
common_inputs["attention_mask"][1] = "past_encoder_sequence + sequence"
common_inputs["decoder_input_ids"] = {0: "batch"}
common_inputs["decoder_attention_mask"] = {0: "batch", 1: "past_decoder_sequence + sequence"}
else:
common_inputs["decoder_input_ids"] = {0: "batch", 1: "decoder_sequence"}
common_inputs["decoder_attention_mask"] = {0: "batch", 1: "decoder_sequence"}
if self.use_past:
self.fill_with_past_key_values_(common_inputs, direction="inputs")
return common_inputs
@property
# Copied from transformers.models.t5.configuration_t5.T5OnnxConfig.default_onnx_opset
def default_onnx_opset(self) -> int:
return 13
@property
def atol_for_validation(self) -> float:
return 5e-4
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mt5/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_sentencepiece_available,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
if is_sentencepiece_available():
from ..t5.tokenization_t5 import T5Tokenizer
else:
from ...utils.dummy_sentencepiece_objects import T5Tokenizer
MT5Tokenizer = T5Tokenizer
if is_tokenizers_available():
from ..t5.tokenization_t5_fast import T5TokenizerFast
else:
from ...utils.dummy_tokenizers_objects import T5TokenizerFast
MT5TokenizerFast = T5TokenizerFast
_import_structure = {"configuration_mt5": ["MT5Config", "MT5OnnxConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_mt5"] = [
"MT5EncoderModel",
"MT5ForConditionalGeneration",
"MT5ForQuestionAnswering",
"MT5ForSequenceClassification",
"MT5ForTokenClassification",
"MT5Model",
"MT5PreTrainedModel",
"MT5Stack",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_mt5"] = ["TFMT5EncoderModel", "TFMT5ForConditionalGeneration", "TFMT5Model"]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_mt5"] = ["FlaxMT5EncoderModel", "FlaxMT5ForConditionalGeneration", "FlaxMT5Model"]
if TYPE_CHECKING:
from .configuration_mt5 import MT5Config, MT5OnnxConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_mt5 import (
MT5EncoderModel,
MT5ForConditionalGeneration,
MT5ForQuestionAnswering,
MT5ForSequenceClassification,
MT5ForTokenClassification,
MT5Model,
MT5PreTrainedModel,
MT5Stack,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_mt5 import TFMT5EncoderModel, TFMT5ForConditionalGeneration, TFMT5Model
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_mt5 import FlaxMT5EncoderModel, FlaxMT5ForConditionalGeneration, FlaxMT5Model
else:
import sys
sys.modules[__name__] = _LazyModule(
__name__,
globals()["__file__"],
_import_structure,
extra_objects={"MT5Tokenizer": MT5Tokenizer, "MT5TokenizerFast": MT5TokenizerFast},
module_spec=__spec__,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mt5/modeling_tf_mt5.py | # coding=utf-8
# Copyright 2020 Mesh TensorFlow authors, T5 Authors and HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tensorflow mT5 model."""
from ...utils import logging
from ..t5.modeling_tf_t5 import TFT5EncoderModel, TFT5ForConditionalGeneration, TFT5Model
from .configuration_mt5 import MT5Config
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "T5Config"
class TFMT5Model(TFT5Model):
r"""
This class overrides [`TFT5Model`]. Please check the superclass for the appropriate documentation alongside usage
examples.
Examples:
```python
>>> from transformers import TFMT5Model, AutoTokenizer
>>> model = TFMT5Model.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> summary = "Weiter Verhandlung in Syrien."
>>> inputs = tokenizer(article, return_tensors="tf")
>>> labels = tokenizer(text_target=summary, return_tensors="tf")
>>> outputs = model(input_ids=inputs["input_ids"], decoder_input_ids=labels["input_ids"])
>>> hidden_states = outputs.last_hidden_state
```"""
model_type = "mt5"
config_class = MT5Config
class TFMT5ForConditionalGeneration(TFT5ForConditionalGeneration):
r"""
This class overrides [`TFT5ForConditionalGeneration`]. Please check the superclass for the appropriate
documentation alongside usage examples.
Examples:
```python
>>> from transformers import TFMT5ForConditionalGeneration, AutoTokenizer
>>> model = TFMT5ForConditionalGeneration.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> summary = "Weiter Verhandlung in Syrien."
>>> inputs = tokenizer(article, text_target=summary, return_tensors="tf")
>>> outputs = model(**inputs)
>>> loss = outputs.loss
```"""
model_type = "mt5"
config_class = MT5Config
class TFMT5EncoderModel(TFT5EncoderModel):
r"""
This class overrides [`TFT5EncoderModel`]. Please check the superclass for the appropriate documentation alongside
usage examples.
Examples:
```python
>>> from transformers import TFMT5EncoderModel, AutoTokenizer
>>> model = TFMT5EncoderModel.from_pretrained("google/mt5-small")
>>> tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
>>> article = "UN Offizier sagt, dass weiter verhandelt werden muss in Syrien."
>>> input_ids = tokenizer(article, return_tensors="tf").input_ids
>>> outputs = model(input_ids)
>>> hidden_state = outputs.last_hidden_state
```"""
model_type = "mt5"
config_class = MT5Config
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bert_generation/configuration_bert_generation.py | # coding=utf-8
# Copyright 2020 The Google AI Language Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""BertGeneration model configuration"""
from ...configuration_utils import PretrainedConfig
class BertGenerationConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`BertGenerationPreTrainedModel`]. It is used to
instantiate a BertGeneration model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the BertGeneration
[google/bert_for_seq_generation_L-24_bbc_encoder](https://huggingface.co/google/bert_for_seq_generation_L-24_bbc_encoder)
architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 50358):
Vocabulary size of the BERT model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`BertGeneration`].
hidden_size (`int`, *optional*, defaults to 1024):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 24):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often called feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
pad_token_id (`int`, *optional*, defaults to 0):
Padding token id.
bos_token_id (`int`, *optional*, defaults to 2):
Beginning of stream token id.
eos_token_id (`int`, *optional*, defaults to 1):
End of stream token id.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
Examples:
```python
>>> from transformers import BertGenerationConfig, BertGenerationEncoder
>>> # Initializing a BertGeneration config
>>> configuration = BertGenerationConfig()
>>> # Initializing a model (with random weights) from the config
>>> model = BertGenerationEncoder(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "bert-generation"
def __init__(
self,
vocab_size=50358,
hidden_size=1024,
num_hidden_layers=24,
num_attention_heads=16,
intermediate_size=4096,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
initializer_range=0.02,
layer_norm_eps=1e-12,
pad_token_id=0,
bos_token_id=2,
eos_token_id=1,
position_embedding_type="absolute",
use_cache=True,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bert_generation/modeling_bert_generation.py | # coding=utf-8
# Copyright 2020 The Google AI Language Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch BERT model specific for generation."""
import math
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...generation import GenerationMixin
from ...modeling_outputs import BaseModelOutputWithPastAndCrossAttentions, CausalLMOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_bert_generation import BertGenerationConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "google/bert_for_seq_generation_L-24_bbc_encoder"
_CONFIG_FOR_DOC = "BertGenerationConfig"
# Copied from transformers.models.bert.modeling_bert.BertSelfOutput with Bert->BertGeneration
class BertGenerationSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertSelfAttention with Bert->BertGeneration
class BertGenerationSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
use_cache = past_key_value is not None
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
query_length, key_length = query_layer.shape[2], key_layer.shape[2]
if use_cache:
position_ids_l = torch.tensor(key_length - 1, dtype=torch.long, device=hidden_states.device).view(
-1, 1
)
else:
position_ids_l = torch.arange(query_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(key_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BertGenerationModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
BERT_GENERATION_SELF_ATTENTION_CLASSES = {
"eager": BertGenerationSelfAttention,
}
# Copied from transformers.models.bert.modeling_bert.BertAttention with Bert->BertGeneration,BERT->BERT_GENERATION
class BertGenerationAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
self.self = BERT_GENERATION_SELF_ATTENTION_CLASSES[config._attn_implementation](
config, position_embedding_type=position_embedding_type
)
self.output = BertGenerationSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->BertGeneration
class BertGenerationIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput with Bert->BertGeneration
class BertGenerationOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLayer with Bert->BertGeneration
class BertGenerationLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = BertGenerationAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = BertGenerationAttention(config, position_embedding_type="absolute")
self.intermediate = BertGenerationIntermediate(config)
self.output = BertGenerationOutput(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
# Copied from transformers.models.bert.modeling_bert.BertEncoder with Bert->BertGeneration
class BertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([BertGenerationLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPastAndCrossAttentions]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
def load_tf_weights_in_bert_generation(
model, tf_hub_path, model_class, is_encoder_named_decoder=False, is_encoder=False
):
try:
import numpy as np
import tensorflow.compat.v1 as tf
import tensorflow_hub as hub
import tensorflow_text # noqa: F401
tf.disable_eager_execution()
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_model = hub.Module(tf_hub_path)
init = tf.global_variables_initializer()
with tf.Session() as sess:
init.run()
all_variables = tf_model.variable_map
keep_track_variables = all_variables.copy()
for key in list(all_variables.keys()):
if "global" in key:
logger.info(f"Skipping {key}...")
continue
if not is_encoder:
model_pointer = getattr(model, model_class)
else:
model_pointer = model
is_embedding = False
logger.info(f"Trying to match {key}...")
# remove start_string = "module/bert/"
sub_layers = key.split("/")[2:]
if is_encoder_named_decoder and sub_layers[0] == "encoder":
logger.info(f"Skipping encoder layer {key} for decoder")
continue
if is_encoder and sub_layers[0] == "decoder":
logger.info(f"Skipping decoder layer {key} for encoder")
continue
for i, sub_layer in enumerate(sub_layers):
if sub_layer == "embeddings":
is_embedding = True
elif sub_layer == "LayerNorm":
is_embedding = False
if "layer" in sub_layer:
model_pointer = model_pointer.layer[int(sub_layer.split("_")[-1])]
elif sub_layer in ["kernel", "gamma"]:
model_pointer = model_pointer.weight
elif sub_layer == "beta":
model_pointer = model_pointer.bias
elif sub_layer == "encdec":
model_pointer = model_pointer.crossattention.self
elif sub_layer == "encdec_output":
model_pointer = model_pointer.crossattention.output
elif is_encoder_named_decoder and sub_layer == "decoder":
model_pointer = model_pointer.encoder
else:
if sub_layer == "attention" and "encdec" in sub_layers[i + 1]:
continue
try:
model_pointer = getattr(model_pointer, sub_layer)
except AttributeError:
logger.info(f"Skipping to initialize {key} at {sub_layer}...")
raise AttributeError
array = np.asarray(sess.run(all_variables[key]))
if not is_embedding:
logger.info(f"Transposing numpy weight of shape {array.shape} for {key}")
array = np.transpose(array)
else:
model_pointer = model_pointer.weight
if model_pointer.shape != array.shape:
raise ValueError(f"Pointer shape {model_pointer.shape} and array shape {array.shape} mismatched")
logger.info(f"Initialize PyTorch weight {key}")
model_pointer.data = torch.from_numpy(array.astype(np.float32))
keep_track_variables.pop(key, None)
logger.info(f"Weights not copied to PyTorch model: {', '.join(keep_track_variables.keys())}")
return model
class BertGenerationEmbeddings(nn.Module):
"""Construct the embeddings from word and position embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
def forward(self, input_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length : seq_length + past_key_values_length]
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
position_embeddings = self.position_embeddings(position_ids)
embeddings = inputs_embeds + position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class BertGenerationPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BertGenerationConfig
base_model_prefix = "bert"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
BERT_GENERATION_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`BertGenerationConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
BERT_GENERATION_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare BertGeneration model transformer outputting raw hidden-states without any specific head on top.",
BERT_GENERATION_START_DOCSTRING,
)
class BertGenerationEncoder(BertGenerationPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
This model should be used when leveraging Bert or Roberta checkpoints for the [`EncoderDecoderModel`] class as
described in [Leveraging Pre-trained Checkpoints for Sequence Generation Tasks](https://arxiv.org/abs/1907.12461)
by Sascha Rothe, Shashi Narayan, and Aliaksei Severyn.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
def __init__(self, config):
super().__init__(config)
self.config = config
self.embeddings = BertGenerationEmbeddings(config)
self.encoder = BertEncoder(config)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(BERT_GENERATION_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPastAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPastAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`: `1` for
tokens that are NOT MASKED, `0` for MASKED tokens.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
if not return_dict:
return (sequence_output,) + encoder_outputs[1:]
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=sequence_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
class BertGenerationOnlyLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.decoder = nn.Linear(config.hidden_size, config.vocab_size)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
self.decoder.bias = self.bias
def forward(self, hidden_states):
logits = self.decoder(hidden_states)
return logits
def _tie_weights(self):
# For accelerate compatibility and to not break backward compatibility
if self.decoder.bias.device.type == "meta":
self.decoder.bias = self.bias
else:
# To tie those two weights if they get disconnected (on TPU or when the bias is resized)
self.bias = self.decoder.bias
@add_start_docstrings(
"""BertGeneration Model with a `language modeling` head on top for CLM fine-tuning.""",
BERT_GENERATION_START_DOCSTRING,
)
class BertGenerationDecoder(BertGenerationPreTrainedModel, GenerationMixin):
_tied_weights_keys = ["lm_head.decoder.weight", "lm_head.decoder.bias"]
def __init__(self, config):
super().__init__(config)
if not config.is_decoder:
logger.warning("If you want to use `BertGenerationDecoder` as a standalone, add `is_decoder=True.`")
self.bert = BertGenerationEncoder(config)
self.lm_head = BertGenerationOnlyLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
self.lm_head.bias = new_embeddings.bias
@add_start_docstrings_to_model_forward(BERT_GENERATION_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=CausalLMOutputWithCrossAttentions, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, CausalLMOutputWithCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be in
`[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are
ignored (masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, BertGenerationDecoder, BertGenerationConfig
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("google/bert_for_seq_generation_L-24_bbc_encoder")
>>> config = BertGenerationConfig.from_pretrained("google/bert_for_seq_generation_L-24_bbc_encoder")
>>> config.is_decoder = True
>>> model = BertGenerationDecoder.from_pretrained(
... "google/bert_for_seq_generation_L-24_bbc_encoder", config=config
... )
>>> inputs = tokenizer("Hello, my dog is cute", return_token_type_ids=False, return_tensors="pt")
>>> outputs = model(**inputs)
>>> prediction_logits = outputs.logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
lm_loss = None
if labels is not None:
# we are doing next-token prediction; shift prediction scores and input ids by one
shifted_prediction_scores = prediction_scores[:, :-1, :].contiguous()
labels = labels[:, 1:].contiguous()
loss_fct = CrossEntropyLoss()
lm_loss = loss_fct(shifted_prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[1:]
return ((lm_loss,) + output) if lm_loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=lm_loss,
logits=prediction_scores,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def _reorder_cache(self, past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past),
)
return reordered_past
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bert_generation/tokenization_bert_generation.py | # coding=utf-8
# Copyright (c) 2020, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization class for model BertGeneration."""
import os
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple
import sentencepiece as spm
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "spiece.model"}
class BertGenerationTokenizer(PreTrainedTokenizer):
"""
Construct a BertGeneration tokenizer. Based on [SentencePiece](https://github.com/google/sentencepiece).
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a *.spm* extension) that
contains the vocabulary necessary to instantiate a tokenizer.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The begin of sequence token.
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
sep_token (`str`, *optional*, defaults to `"<::::>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
sp_model_kwargs (`dict`, *optional*):
Will be passed to the `SentencePieceProcessor.__init__()` method. The [Python wrapper for
SentencePiece](https://github.com/google/sentencepiece/tree/master/python) can be used, among other things,
to set:
- `enable_sampling`: Enable subword regularization.
- `nbest_size`: Sampling parameters for unigram. Invalid for BPE-Dropout.
- `nbest_size = {0,1}`: No sampling is performed.
- `nbest_size > 1`: samples from the nbest_size results.
- `nbest_size < 0`: assuming that nbest_size is infinite and samples from the all hypothesis (lattice)
using forward-filtering-and-backward-sampling algorithm.
- `alpha`: Smoothing parameter for unigram sampling, and dropout probability of merge operations for
BPE-dropout.
"""
vocab_files_names = VOCAB_FILES_NAMES
prefix_tokens: List[int] = []
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
bos_token="<s>",
eos_token="</s>",
unk_token="<unk>",
pad_token="<pad>",
sep_token="<::::>",
sp_model_kwargs: Optional[Dict[str, Any]] = None,
**kwargs,
) -> None:
self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
self.vocab_file = vocab_file
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(vocab_file)
# Add extra_ids to the special token list
super().__init__(
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
pad_token=pad_token,
sep_token=sep_token,
sp_model_kwargs=self.sp_model_kwargs,
**kwargs,
)
@property
def vocab_size(self):
return self.sp_model.get_piece_size()
def get_vocab(self):
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
vocab.update(self.added_tokens_encoder)
return vocab
def __getstate__(self):
state = self.__dict__.copy()
state["sp_model"] = None
return state
def __setstate__(self, d):
self.__dict__ = d
# for backward compatibility
if not hasattr(self, "sp_model_kwargs"):
self.sp_model_kwargs = {}
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(self.vocab_file)
def _tokenize(self, text: str) -> List[str]:
"""Take as input a string and return a list of strings (tokens) for words/sub-words"""
return self.sp_model.encode(text, out_type=str)
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.sp_model.piece_to_id(token)
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
token = self.sp_model.IdToPiece(index)
return token
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
current_sub_tokens = []
out_string = ""
for token in tokens:
# make sure that special tokens are not decoded using sentencepiece model
if token in self.all_special_tokens:
out_string += self.sp_model.decode(current_sub_tokens) + token
current_sub_tokens = []
else:
current_sub_tokens.append(token)
out_string += self.sp_model.decode(current_sub_tokens)
return out_string.strip()
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file) and os.path.isfile(self.vocab_file):
copyfile(self.vocab_file, out_vocab_file)
elif not os.path.isfile(self.vocab_file):
with open(out_vocab_file, "wb") as fi:
content_spiece_model = self.sp_model.serialized_model_proto()
fi.write(content_spiece_model)
return (out_vocab_file,)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bert_generation/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_sentencepiece_available, is_torch_available
_import_structure = {"configuration_bert_generation": ["BertGenerationConfig"]}
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_bert_generation"] = ["BertGenerationTokenizer"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_bert_generation"] = [
"BertGenerationDecoder",
"BertGenerationEncoder",
"BertGenerationPreTrainedModel",
"load_tf_weights_in_bert_generation",
]
if TYPE_CHECKING:
from .configuration_bert_generation import BertGenerationConfig
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_bert_generation import BertGenerationTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_bert_generation import (
BertGenerationDecoder,
BertGenerationEncoder,
BertGenerationPreTrainedModel,
load_tf_weights_in_bert_generation,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/led/modeling_tf_led.py | # coding=utf-8
# Copyright 2021 Iz Beltagy, Matthew E. Peters, Arman Cohan and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TF 2.0 LED model."""
from __future__ import annotations
import random
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutputWithPastAndCrossAttentions
# Public API
from ...modeling_tf_utils import (
TFModelInputType,
TFPreTrainedModel,
get_initializer,
keras,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_led import LEDConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "allenai/led-base-16384"
_CONFIG_FOR_DOC = "LEDConfig"
LARGE_NEGATIVE = -1e8
# Copied from transformers.models.bart.modeling_tf_bart.shift_tokens_right
def shift_tokens_right(input_ids: tf.Tensor, pad_token_id: int, decoder_start_token_id: int):
pad_token_id = tf.cast(pad_token_id, input_ids.dtype)
decoder_start_token_id = tf.cast(decoder_start_token_id, input_ids.dtype)
start_tokens = tf.fill(
(shape_list(input_ids)[0], 1), tf.convert_to_tensor(decoder_start_token_id, input_ids.dtype)
)
shifted_input_ids = tf.concat([start_tokens, input_ids[:, :-1]], -1)
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids = tf.where(
shifted_input_ids == -100,
tf.fill(shape_list(shifted_input_ids), tf.convert_to_tensor(pad_token_id, input_ids.dtype)),
shifted_input_ids,
)
# "Verify that `labels` has only positive values and -100"
assert_gte0 = tf.debugging.assert_greater_equal(shifted_input_ids, tf.constant(0, dtype=input_ids.dtype))
# Make sure the assertion op is called by wrapping the result in an identity no-op
with tf.control_dependencies([assert_gte0]):
shifted_input_ids = tf.identity(shifted_input_ids)
return shifted_input_ids
# Copied from transformers.models.bart.modeling_tf_bart._make_causal_mask
def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz = input_ids_shape[0]
tgt_len = input_ids_shape[1]
mask = tf.ones((tgt_len, tgt_len)) * LARGE_NEGATIVE
mask_cond = tf.range(shape_list(mask)[-1])
mask = tf.where(mask_cond < tf.reshape(mask_cond + 1, (shape_list(mask)[-1], 1)), 0.0, mask)
if past_key_values_length > 0:
mask = tf.concat([tf.zeros((tgt_len, past_key_values_length)), mask], axis=-1)
return tf.tile(mask[None, None, :, :], (bsz, 1, 1, 1))
# Copied from transformers.models.bart.modeling_tf_bart._expand_mask
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE
class TFLEDLearnedPositionalEmbedding(keras.layers.Embedding):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, num_embeddings: int, embedding_dim: int, **kwargs):
super().__init__(num_embeddings, embedding_dim, **kwargs)
def call(self, input_shape: tf.TensorShape, past_key_values_length: int = 0):
"""Input is expected to be of size [bsz x seqlen]."""
seq_len = input_shape[1]
position_ids = tf.range(seq_len, delta=1, name="range")
position_ids += past_key_values_length
return super().call(tf.cast(position_ids, dtype=tf.int32))
# Copied from transformers.models.longformer.modeling_tf_longformer.TFLongformerSelfAttention with TFLongformer->TFLEDEncoder
class TFLEDEncoderSelfAttention(keras.layers.Layer):
def __init__(self, config, layer_id, **kwargs):
super().__init__(**kwargs)
self.config = config
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads}"
)
self.num_heads = config.num_attention_heads
self.head_dim = int(config.hidden_size / config.num_attention_heads)
self.embed_dim = config.hidden_size
self.query = keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="query",
)
self.key = keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="key",
)
self.value = keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="value",
)
# separate projection layers for tokens with global attention
self.query_global = keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="query_global",
)
self.key_global = keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="key_global",
)
self.value_global = keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="value_global",
)
self.dropout = keras.layers.Dropout(config.attention_probs_dropout_prob)
self.global_dropout = keras.layers.Dropout(config.attention_probs_dropout_prob)
self.layer_id = layer_id
attention_window = config.attention_window[self.layer_id]
assert (
attention_window % 2 == 0
), f"`attention_window` for layer {self.layer_id} has to be an even value. Given {attention_window}"
assert (
attention_window > 0
), f"`attention_window` for layer {self.layer_id} has to be positive. Given {attention_window}"
self.one_sided_attn_window_size = attention_window // 2
def build(self, input_shape=None):
if not self.built:
with tf.name_scope("query_global"):
self.query_global.build((self.config.hidden_size,))
with tf.name_scope("key_global"):
self.key_global.build((self.config.hidden_size,))
with tf.name_scope("value_global"):
self.value_global.build((self.config.hidden_size,))
if self.built:
return
self.built = True
if getattr(self, "query", None) is not None:
with tf.name_scope(self.query.name):
self.query.build([None, None, self.config.hidden_size])
if getattr(self, "key", None) is not None:
with tf.name_scope(self.key.name):
self.key.build([None, None, self.config.hidden_size])
if getattr(self, "value", None) is not None:
with tf.name_scope(self.value.name):
self.value.build([None, None, self.config.hidden_size])
if getattr(self, "query_global", None) is not None:
with tf.name_scope(self.query_global.name):
self.query_global.build([None, None, self.config.hidden_size])
if getattr(self, "key_global", None) is not None:
with tf.name_scope(self.key_global.name):
self.key_global.build([None, None, self.config.hidden_size])
if getattr(self, "value_global", None) is not None:
with tf.name_scope(self.value_global.name):
self.value_global.build([None, None, self.config.hidden_size])
def call(
self,
inputs,
training=False,
):
"""
LongformerSelfAttention expects *len(hidden_states)* to be multiple of *attention_window*. Padding to
*attention_window* happens in LongformerModel.forward to avoid redoing the padding on each layer.
The *attention_mask* is changed in [`LongformerModel.forward`] from 0, 1, 2 to:
- -10000: no attention
- 0: local attention
- +10000: global attention
"""
# retrieve input args
(
hidden_states,
attention_mask,
layer_head_mask,
is_index_masked,
is_index_global_attn,
is_global_attn,
) = inputs
# project hidden states
query_vectors = self.query(hidden_states)
key_vectors = self.key(hidden_states)
value_vectors = self.value(hidden_states)
batch_size, seq_len, embed_dim = shape_list(hidden_states)
tf.debugging.assert_equal(
embed_dim,
self.embed_dim,
message=f"hidden_states should have embed_dim = {self.embed_dim}, but has {embed_dim}",
)
# normalize query
query_vectors /= tf.math.sqrt(tf.cast(self.head_dim, dtype=query_vectors.dtype))
query_vectors = tf.reshape(query_vectors, (batch_size, seq_len, self.num_heads, self.head_dim))
key_vectors = tf.reshape(key_vectors, (batch_size, seq_len, self.num_heads, self.head_dim))
# attn_probs = (batch_size, seq_len, num_heads, window*2+1)
attn_scores = self._sliding_chunks_query_key_matmul(
query_vectors, key_vectors, self.one_sided_attn_window_size
)
# values to pad for attention probs
remove_from_windowed_attention_mask = attention_mask != 0
# cast to fp32/fp16 then replace 1's with -inf
float_mask = tf.cast(remove_from_windowed_attention_mask, dtype=query_vectors.dtype) * LARGE_NEGATIVE
# diagonal mask with zeros everywhere and -inf inplace of padding
diagonal_mask = self._sliding_chunks_query_key_matmul(
tf.ones(shape_list(attention_mask)),
float_mask,
self.one_sided_attn_window_size,
)
# pad local attention probs
attn_scores += diagonal_mask
tf.debugging.assert_equal(
shape_list(attn_scores),
[batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + 1],
message=(
f"attn_probs should be of size ({batch_size}, {seq_len}, {self.num_heads},"
f" {self.one_sided_attn_window_size * 2 + 1}), but is of size {shape_list(attn_scores)}"
),
)
# compute global attn indices required through out forward fn
(
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
) = self._get_global_attn_indices(is_index_global_attn)
# this function is only relevant for global attention
if is_global_attn:
attn_scores = self._concat_with_global_key_attn_probs(
attn_scores=attn_scores,
query_vectors=query_vectors,
key_vectors=key_vectors,
max_num_global_attn_indices=max_num_global_attn_indices,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero=is_local_index_no_global_attn_nonzero,
)
attn_probs = stable_softmax(attn_scores, axis=-1)
# softmax sometimes inserts NaN if all positions are masked, replace them with 0
# Make sure to create a mask with the proper shape:
# if is_global_attn==True => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1]
# if is_global_attn==False => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + 1]
if is_global_attn:
masked_index = tf.tile(
is_index_masked[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1),
)
else:
masked_index = tf.tile(
is_index_masked[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + 1),
)
attn_probs = tf.where(
masked_index,
tf.zeros(shape_list(masked_index), dtype=attn_probs.dtype),
attn_probs,
)
if layer_head_mask is not None:
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=(
f"Head mask for a single layer should be of size {(self.num_heads)}, but is"
f" {shape_list(layer_head_mask)}"
),
)
attn_probs = tf.reshape(layer_head_mask, (1, 1, -1, 1)) * attn_probs
# apply dropout
attn_probs = self.dropout(attn_probs, training=training)
value_vectors = tf.reshape(value_vectors, (batch_size, seq_len, self.num_heads, self.head_dim))
# if global attention, compute sum of global and local attn
if is_global_attn:
attn_output = self._compute_attn_output_with_global_indices(
value_vectors=value_vectors,
attn_probs=attn_probs,
max_num_global_attn_indices=max_num_global_attn_indices,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
)
else:
attn_output = self._sliding_chunks_matmul_attn_probs_value(
attn_probs, value_vectors, self.one_sided_attn_window_size
)
tf.debugging.assert_equal(
shape_list(attn_output), [batch_size, seq_len, self.num_heads, self.head_dim], message="Unexpected size"
)
attn_output = tf.reshape(attn_output, (batch_size, seq_len, embed_dim))
# compute value for global attention and overwrite to attention output
if is_global_attn:
attn_output, global_attn_probs = self._compute_global_attn_output_from_hidden(
attn_output=attn_output,
hidden_states=hidden_states,
max_num_global_attn_indices=max_num_global_attn_indices,
layer_head_mask=layer_head_mask,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero=is_local_index_no_global_attn_nonzero,
is_index_masked=is_index_masked,
training=training,
)
else:
# Leave attn_output unchanged
global_attn_probs = tf.zeros((batch_size, self.num_heads, max_num_global_attn_indices, seq_len))
# make sure that local attention probabilities are set to 0 for indices of global attn
# Make sure to create a mask with the proper shape:
# if is_global_attn==True => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1]
# if is_global_attn==False => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + 1]
if is_global_attn:
masked_global_attn_index = tf.tile(
is_index_global_attn[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1),
)
else:
masked_global_attn_index = tf.tile(
is_index_global_attn[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + 1),
)
attn_probs = tf.where(
masked_global_attn_index,
tf.zeros(shape_list(masked_global_attn_index), dtype=attn_probs.dtype),
attn_probs,
)
outputs = (attn_output, attn_probs, global_attn_probs)
return outputs
def _sliding_chunks_query_key_matmul(self, query, key, window_overlap):
"""
Matrix multiplication of query and key tensors using with a sliding window attention pattern. This
implementation splits the input into overlapping chunks of size 2w (e.g. 512 for pretrained Longformer) with an
overlap of size window_overlap
"""
batch_size, seq_len, num_heads, head_dim = shape_list(query)
tf.debugging.assert_equal(
seq_len % (window_overlap * 2),
0,
message=f"Sequence length should be multiple of {window_overlap * 2}. Given {seq_len}",
)
tf.debugging.assert_equal(
shape_list(query),
shape_list(key),
message=(
f"Shape of query and key should be equal, but got query: {shape_list(query)} and key:"
f" {shape_list(key)}"
),
)
chunks_count = seq_len // window_overlap - 1
# group batch_size and num_heads dimensions into one, then chunk seq_len into chunks of size window_overlap * 2
query = tf.reshape(
tf.transpose(query, (0, 2, 1, 3)),
(batch_size * num_heads, seq_len, head_dim),
)
key = tf.reshape(tf.transpose(key, (0, 2, 1, 3)), (batch_size * num_heads, seq_len, head_dim))
chunked_query = self._chunk(query, window_overlap)
chunked_key = self._chunk(key, window_overlap)
# matrix multiplication
# bcxd: batch_size * num_heads x chunks x 2window_overlap x head_dim
# bcyd: batch_size * num_heads x chunks x 2window_overlap x head_dim
# bcxy: batch_size * num_heads x chunks x 2window_overlap x 2window_overlap
chunked_query = tf.cast(chunked_query, dtype=chunked_key.dtype)
chunked_attention_scores = tf.einsum("bcxd,bcyd->bcxy", chunked_query, chunked_key) # multiply
# convert diagonals into columns
paddings = tf.convert_to_tensor([[0, 0], [0, 0], [0, 1], [0, 0]])
diagonal_chunked_attention_scores = self._pad_and_transpose_last_two_dims(chunked_attention_scores, paddings)
# allocate space for the overall attention matrix where the chunks are combined. The last dimension
# has (window_overlap * 2 + 1) columns. The first (window_overlap) columns are the window_overlap lower triangles (attention from a word to
# window_overlap previous words). The following column is attention score from each word to itself, then
# followed by window_overlap columns for the upper triangle.
# copy parts from diagonal_chunked_attention_scores into the combined matrix of attentions
# - copying the main diagonal and the upper triangle
# TODO: This code is most likely not very efficient and should be improved
diagonal_attn_scores_up_triang = tf.concat(
[
diagonal_chunked_attention_scores[:, :, :window_overlap, : window_overlap + 1],
diagonal_chunked_attention_scores[:, -1:, window_overlap:, : window_overlap + 1],
],
axis=1,
)
# - copying the lower triangle
diagonal_attn_scores_low_triang = tf.concat(
[
tf.zeros(
(batch_size * num_heads, 1, window_overlap, window_overlap),
dtype=diagonal_chunked_attention_scores.dtype,
),
diagonal_chunked_attention_scores[:, :, -(window_overlap + 1) : -1, window_overlap + 1 :],
],
axis=1,
)
diagonal_attn_scores_first_chunk = tf.concat(
[
tf.roll(
diagonal_chunked_attention_scores,
shift=[1, window_overlap],
axis=[2, 3],
)[:, :, :window_overlap, :window_overlap],
tf.zeros(
(batch_size * num_heads, 1, window_overlap, window_overlap),
dtype=diagonal_chunked_attention_scores.dtype,
),
],
axis=1,
)
first_chunk_mask = (
tf.tile(
tf.range(chunks_count + 1, dtype=tf.int64)[None, :, None, None],
(batch_size * num_heads, 1, window_overlap, window_overlap),
)
< 1
)
diagonal_attn_scores_low_triang = tf.where(
first_chunk_mask,
diagonal_attn_scores_first_chunk,
diagonal_attn_scores_low_triang,
)
# merging upper and lower triangle
diagonal_attention_scores = tf.concat(
[diagonal_attn_scores_low_triang, diagonal_attn_scores_up_triang], axis=-1
)
# separate batch_size and num_heads dimensions again
diagonal_attention_scores = tf.transpose(
tf.reshape(
diagonal_attention_scores,
(batch_size, num_heads, seq_len, 2 * window_overlap + 1),
),
(0, 2, 1, 3),
)
diagonal_attention_scores = self._mask_invalid_locations(diagonal_attention_scores, window_overlap)
return diagonal_attention_scores
@staticmethod
def _mask_invalid_locations(input_tensor, window_overlap):
# create correct upper triangle bool mask
mask_2d_upper = tf.reverse(
tf.linalg.band_part(tf.ones(shape=(window_overlap, window_overlap + 1)), -1, 0),
axis=[0],
)
# pad to full matrix
padding = tf.convert_to_tensor(
[[0, shape_list(input_tensor)[1] - window_overlap], [0, shape_list(input_tensor)[3] - window_overlap - 1]]
)
# create lower mask
mask_2d = tf.pad(mask_2d_upper, padding)
# combine with upper mask
mask_2d = mask_2d + tf.reverse(mask_2d, axis=[0, 1])
# broadcast to full matrix
mask_4d = tf.tile(mask_2d[None, :, None, :], (shape_list(input_tensor)[0], 1, 1, 1))
# inf tensor used for masking
inf_tensor = -float("inf") * tf.ones_like(input_tensor)
# mask
input_tensor = tf.where(tf.math.greater(mask_4d, 0), inf_tensor, input_tensor)
return input_tensor
def _sliding_chunks_matmul_attn_probs_value(self, attn_probs, value, window_overlap):
"""
Same as _sliding_chunks_query_key_matmul but for attn_probs and value tensors. Returned tensor will be of the
same shape as `attn_probs`
"""
batch_size, seq_len, num_heads, head_dim = shape_list(value)
tf.debugging.assert_equal(
seq_len % (window_overlap * 2), 0, message="Seq_len has to be multiple of 2 * window_overlap"
)
tf.debugging.assert_equal(
shape_list(attn_probs)[:3],
shape_list(value)[:3],
message="value and attn_probs must have same dims (except head_dim)",
)
tf.debugging.assert_equal(
shape_list(attn_probs)[3],
2 * window_overlap + 1,
message="attn_probs last dim has to be 2 * window_overlap + 1",
)
chunks_count = seq_len // window_overlap - 1
# group batch_size and num_heads dimensions into one, then chunk seq_len into chunks of size 2 window overlap
chunked_attn_probs = tf.reshape(
tf.transpose(attn_probs, (0, 2, 1, 3)),
(
batch_size * num_heads,
seq_len // window_overlap,
window_overlap,
2 * window_overlap + 1,
),
)
# group batch_size and num_heads dimensions into one
value = tf.reshape(
tf.transpose(value, (0, 2, 1, 3)),
(batch_size * num_heads, seq_len, head_dim),
)
# pad seq_len with w at the beginning of the sequence and another window overlap at the end
paddings = tf.convert_to_tensor([[0, 0], [window_overlap, window_overlap], [0, 0]])
padded_value = tf.pad(value, paddings, constant_values=-1)
# chunk padded_value into chunks of size 3 window overlap and an overlap of size window overlap
frame_size = 3 * window_overlap * head_dim
frame_hop_size = (shape_list(padded_value)[1] * head_dim - frame_size) // chunks_count
chunked_value = tf.signal.frame(
tf.reshape(padded_value, (batch_size * num_heads, -1)),
frame_size,
frame_hop_size,
)
chunked_value = tf.reshape(
chunked_value,
(batch_size * num_heads, chunks_count + 1, 3 * window_overlap, head_dim),
)
tf.debugging.assert_equal(
shape_list(chunked_value),
[batch_size * num_heads, chunks_count + 1, 3 * window_overlap, head_dim],
message="Chunked value has the wrong shape",
)
chunked_attn_probs = self._pad_and_diagonalize(chunked_attn_probs)
context = tf.einsum("bcwd,bcdh->bcwh", chunked_attn_probs, chunked_value)
context = tf.transpose(
tf.reshape(context, (batch_size, num_heads, seq_len, head_dim)),
(0, 2, 1, 3),
)
return context
@staticmethod
def _pad_and_transpose_last_two_dims(hidden_states_padded, paddings):
"""pads rows and then flips rows and columns"""
hidden_states_padded = tf.pad(
hidden_states_padded, paddings
) # padding value is not important because it will be overwritten
batch_size, chunk_size, seq_length, hidden_dim = shape_list(hidden_states_padded)
hidden_states_padded = tf.reshape(hidden_states_padded, (batch_size, chunk_size, hidden_dim, seq_length))
return hidden_states_padded
@staticmethod
def _pad_and_diagonalize(chunked_hidden_states):
"""
shift every row 1 step right, converting columns into diagonals.
Example:
```python
chunked_hidden_states: [
0.4983,
2.6918,
-0.0071,
1.0492,
-1.8348,
0.7672,
0.2986,
0.0285,
-0.7584,
0.4206,
-0.0405,
0.1599,
2.0514,
-1.1600,
0.5372,
0.2629,
]
window_overlap = num_rows = 4
```
(pad & diagonalize) => [ 0.4983, 2.6918, -0.0071, 1.0492, 0.0000, 0.0000, 0.0000
0.0000, -1.8348, 0.7672, 0.2986, 0.0285, 0.0000, 0.0000 0.0000, 0.0000, -0.7584, 0.4206,
-0.0405, 0.1599, 0.0000 0.0000, 0.0000, 0.0000, 2.0514, -1.1600, 0.5372, 0.2629 ]
"""
total_num_heads, num_chunks, window_overlap, hidden_dim = shape_list(chunked_hidden_states)
paddings = tf.convert_to_tensor([[0, 0], [0, 0], [0, 0], [0, window_overlap + 1]])
chunked_hidden_states = tf.pad(
chunked_hidden_states, paddings
) # total_num_heads x num_chunks x window_overlap x (hidden_dim+window_overlap+1). Padding value is not important because it'll be overwritten
chunked_hidden_states = tf.reshape(
chunked_hidden_states, (total_num_heads, num_chunks, -1)
) # total_num_heads x num_chunks x window_overlapL+window_overlapwindow_overlap+window_overlap
chunked_hidden_states = chunked_hidden_states[
:, :, :-window_overlap
] # total_num_heads x num_chunks x window_overlapL+window_overlapwindow_overlap
chunked_hidden_states = tf.reshape(
chunked_hidden_states,
(total_num_heads, num_chunks, window_overlap, window_overlap + hidden_dim),
) # total_num_heads x num_chunks, window_overlap x hidden_dim+window_overlap
chunked_hidden_states = chunked_hidden_states[:, :, :, :-1]
return chunked_hidden_states
@staticmethod
def _chunk(hidden_states, window_overlap):
"""convert into overlapping chunks. Chunk size = 2w, overlap size = w"""
batch_size, seq_length, hidden_dim = shape_list(hidden_states)
num_output_chunks = 2 * (seq_length // (2 * window_overlap)) - 1
# define frame size and frame stride (similar to convolution)
frame_hop_size = window_overlap * hidden_dim
frame_size = 2 * frame_hop_size
hidden_states = tf.reshape(hidden_states, (batch_size, seq_length * hidden_dim))
# chunk with overlap
chunked_hidden_states = tf.signal.frame(hidden_states, frame_size, frame_hop_size)
tf.debugging.assert_equal(
shape_list(chunked_hidden_states),
[batch_size, num_output_chunks, frame_size],
message=(
"Make sure chunking is correctly applied. `Chunked hidden states should have output dimension"
f" {[batch_size, frame_size, num_output_chunks]}, but got {shape_list(chunked_hidden_states)}."
),
)
chunked_hidden_states = tf.reshape(
chunked_hidden_states,
(batch_size, num_output_chunks, 2 * window_overlap, hidden_dim),
)
return chunked_hidden_states
@staticmethod
def _get_global_attn_indices(is_index_global_attn):
"""compute global attn indices required throughout forward pass"""
# helper variable
num_global_attn_indices = tf.math.count_nonzero(is_index_global_attn, axis=1)
num_global_attn_indices = tf.cast(num_global_attn_indices, dtype=tf.constant(1).dtype)
# max number of global attn indices in batch
max_num_global_attn_indices = tf.reduce_max(num_global_attn_indices)
# indices of global attn
is_index_global_attn_nonzero = tf.where(is_index_global_attn)
# helper variable
is_local_index_global_attn = tf.range(max_num_global_attn_indices) < tf.expand_dims(
num_global_attn_indices, axis=-1
)
# location of the non-padding values within global attention indices
is_local_index_global_attn_nonzero = tf.where(is_local_index_global_attn)
# location of the padding values within global attention indices
is_local_index_no_global_attn_nonzero = tf.where(tf.math.logical_not(is_local_index_global_attn))
return (
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
)
def _concat_with_global_key_attn_probs(
self,
attn_scores,
key_vectors,
query_vectors,
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
):
batch_size = shape_list(key_vectors)[0]
# select global key vectors
global_key_vectors = tf.gather_nd(key_vectors, is_index_global_attn_nonzero)
# create only global key vectors
key_vectors_only_global = tf.scatter_nd(
is_local_index_global_attn_nonzero,
global_key_vectors,
shape=(
batch_size,
max_num_global_attn_indices,
self.num_heads,
self.head_dim,
),
)
# (batch_size, seq_len, num_heads, max_num_global_attn_indices)
attn_probs_from_global_key = tf.einsum("blhd,bshd->blhs", query_vectors, key_vectors_only_global)
# (batch_size, max_num_global_attn_indices, seq_len, num_heads)
attn_probs_from_global_key_trans = tf.transpose(attn_probs_from_global_key, (0, 3, 1, 2))
mask_shape = (shape_list(is_local_index_no_global_attn_nonzero)[0],) + tuple(
shape_list(attn_probs_from_global_key_trans)[-2:]
)
mask = tf.ones(mask_shape) * -10000.0
mask = tf.cast(mask, dtype=attn_probs_from_global_key_trans.dtype)
# scatter mask
attn_probs_from_global_key_trans = tf.tensor_scatter_nd_update(
attn_probs_from_global_key_trans,
is_local_index_no_global_attn_nonzero,
mask,
)
# (batch_size, seq_len, num_heads, max_num_global_attn_indices)
attn_probs_from_global_key = tf.transpose(attn_probs_from_global_key_trans, (0, 2, 3, 1))
# concat to attn_probs
# (batch_size, seq_len, num_heads, extra attention count + 2*window+1)
attn_scores = tf.concat((attn_probs_from_global_key, attn_scores), axis=-1)
return attn_scores
def _compute_attn_output_with_global_indices(
self,
value_vectors,
attn_probs,
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
):
batch_size = shape_list(attn_probs)[0]
# cut local attn probs to global only
attn_probs_only_global = attn_probs[:, :, :, :max_num_global_attn_indices]
# select global value vectors
global_value_vectors = tf.gather_nd(value_vectors, is_index_global_attn_nonzero)
# create only global value vectors
value_vectors_only_global = tf.scatter_nd(
is_local_index_global_attn_nonzero,
global_value_vectors,
shape=(
batch_size,
max_num_global_attn_indices,
self.num_heads,
self.head_dim,
),
)
# compute attn output only global
attn_output_only_global = tf.einsum("blhs,bshd->blhd", attn_probs_only_global, value_vectors_only_global)
# reshape attn probs
attn_probs_without_global = attn_probs[:, :, :, max_num_global_attn_indices:]
# compute attn output with global
attn_output_without_global = self._sliding_chunks_matmul_attn_probs_value(
attn_probs_without_global, value_vectors, self.one_sided_attn_window_size
)
return attn_output_only_global + attn_output_without_global
def _compute_global_attn_output_from_hidden(
self,
attn_output,
hidden_states,
max_num_global_attn_indices,
layer_head_mask,
is_local_index_global_attn_nonzero,
is_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
is_index_masked,
training,
):
batch_size, seq_len = shape_list(hidden_states)[:2]
# prepare global hidden states
global_attn_hidden_states = tf.gather_nd(hidden_states, is_index_global_attn_nonzero)
global_attn_hidden_states = tf.scatter_nd(
is_local_index_global_attn_nonzero,
global_attn_hidden_states,
shape=(batch_size, max_num_global_attn_indices, self.embed_dim),
)
# global key, query, value
global_query_vectors_only_global = self.query_global(global_attn_hidden_states)
global_key_vectors = self.key_global(hidden_states)
global_value_vectors = self.value_global(hidden_states)
# normalize
global_query_vectors_only_global /= tf.math.sqrt(
tf.cast(self.head_dim, dtype=global_query_vectors_only_global.dtype)
)
global_query_vectors_only_global = self.reshape_and_transpose(global_query_vectors_only_global, batch_size)
global_key_vectors = self.reshape_and_transpose(global_key_vectors, batch_size)
global_value_vectors = self.reshape_and_transpose(global_value_vectors, batch_size)
# compute attn scores
global_attn_scores = tf.matmul(global_query_vectors_only_global, global_key_vectors, transpose_b=True)
tf.debugging.assert_equal(
shape_list(global_attn_scores),
[batch_size * self.num_heads, max_num_global_attn_indices, seq_len],
message=(
"global_attn_scores have the wrong size. Size should be"
f" {(batch_size * self.num_heads, max_num_global_attn_indices, seq_len)}, but is"
f" {shape_list(global_attn_scores)}."
),
)
global_attn_scores = tf.reshape(
global_attn_scores,
(batch_size, self.num_heads, max_num_global_attn_indices, seq_len),
)
global_attn_scores_trans = tf.transpose(global_attn_scores, (0, 2, 1, 3))
mask_shape = (shape_list(is_local_index_no_global_attn_nonzero)[0],) + tuple(
shape_list(global_attn_scores_trans)[-2:]
)
global_attn_mask = tf.ones(mask_shape) * -10000.0
global_attn_mask = tf.cast(global_attn_mask, dtype=global_attn_scores_trans.dtype)
# scatter mask
global_attn_scores_trans = tf.tensor_scatter_nd_update(
global_attn_scores_trans,
is_local_index_no_global_attn_nonzero,
global_attn_mask,
)
global_attn_scores = tf.transpose(global_attn_scores_trans, (0, 2, 1, 3))
# mask global attn scores
attn_mask = tf.tile(is_index_masked[:, None, None, :], (1, shape_list(global_attn_scores)[1], 1, 1))
global_attn_scores = tf.where(attn_mask, -10000.0, global_attn_scores)
global_attn_scores = tf.reshape(
global_attn_scores,
(batch_size * self.num_heads, max_num_global_attn_indices, seq_len),
)
# compute global attn probs
global_attn_probs_float = stable_softmax(global_attn_scores, axis=-1)
# apply layer head masking
if layer_head_mask is not None:
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=(
f"Head mask for a single layer should be of size {(self.num_heads)}, but is"
f" {shape_list(layer_head_mask)}"
),
)
global_attn_probs_float = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
global_attn_probs_float, (batch_size, self.num_heads, max_num_global_attn_indices, seq_len)
)
global_attn_probs_float = tf.reshape(
global_attn_probs_float, (batch_size * self.num_heads, max_num_global_attn_indices, seq_len)
)
# dropout
global_attn_probs = self.global_dropout(global_attn_probs_float, training=training)
# global attn output
global_attn_output = tf.matmul(global_attn_probs, global_value_vectors)
tf.debugging.assert_equal(
shape_list(global_attn_output),
[batch_size * self.num_heads, max_num_global_attn_indices, self.head_dim],
message=(
"global_attn_output tensor has the wrong size. Size should be"
f" {(batch_size * self.num_heads, max_num_global_attn_indices, self.head_dim)}, but is"
f" {shape_list(global_attn_output)}."
),
)
global_attn_output = tf.reshape(
global_attn_output,
(batch_size, self.num_heads, max_num_global_attn_indices, self.head_dim),
)
# get only non zero global attn output
nonzero_global_attn_output = tf.gather_nd(
tf.transpose(global_attn_output, (0, 2, 1, 3)),
is_local_index_global_attn_nonzero,
)
nonzero_global_attn_output = tf.reshape(
nonzero_global_attn_output,
(shape_list(is_local_index_global_attn_nonzero)[0], -1),
)
# overwrite values with global attention
attn_output = tf.tensor_scatter_nd_update(
attn_output, is_index_global_attn_nonzero, nonzero_global_attn_output
)
global_attn_probs = tf.reshape(
global_attn_probs, (batch_size, self.num_heads, max_num_global_attn_indices, seq_len)
)
return attn_output, global_attn_probs
def reshape_and_transpose(self, vector, batch_size):
return tf.reshape(
tf.transpose(
tf.reshape(vector, (batch_size, -1, self.num_heads, self.head_dim)),
(0, 2, 1, 3),
),
(batch_size * self.num_heads, -1, self.head_dim),
)
class TFLEDEncoderAttention(keras.layers.Layer):
def __init__(self, config, layer_id, **kwargs):
super().__init__(**kwargs)
self.longformer_self_attn = TFLEDEncoderSelfAttention(config, layer_id=layer_id, name="longformer_self_attn")
self.output_dense = keras.layers.Dense(config.d_model, use_bias=True, name="output")
self.config = config
def call(self, inputs, training=False):
(
hidden_states,
attention_mask,
layer_head_mask,
is_index_masked,
is_index_global_attn,
is_global_attn,
) = inputs
self_outputs = self.longformer_self_attn(
[hidden_states, attention_mask, layer_head_mask, is_index_masked, is_index_global_attn, is_global_attn],
training=training,
)
attention_output = self.output_dense(self_outputs[0], training=training)
outputs = (attention_output,) + self_outputs[1:]
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "longformer_self_attn", None) is not None:
with tf.name_scope(self.longformer_self_attn.name):
self.longformer_self_attn.build(None)
if getattr(self, "output_dense", None) is not None:
with tf.name_scope(self.output_dense.name):
self.output_dense.build([None, None, self.config.d_model])
class TFLEDDecoderAttention(keras.layers.Layer):
"""Multi-headed attention from "Attention Is All You Need"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = keras.layers.Dropout(dropout)
self.head_dim = embed_dim // num_heads
assert self.head_dim * num_heads == self.embed_dim, "embed_dim must be divisible by num_heads"
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="k_proj")
self.q_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="q_proj")
self.v_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="v_proj")
self.out_proj = keras.layers.Dense(embed_dim, use_bias=bias, name="out_proj")
def _shape(self, tensor: tf.Tensor, seq_len: int, bsz: int):
return tf.transpose(tf.reshape(tensor, (bsz, seq_len, self.num_heads, self.head_dim)), (0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
key_value_states: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
attention_mask: tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
training=False,
) -> Tuple[tf.Tensor, tf.Tensor | None]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, embed_dim = shape_list(hidden_states)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = tf.concat([past_key_value[0], key_states], axis=2)
value_states = tf.concat([past_key_value[1], value_states], axis=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = tf.reshape(self._shape(query_states, tgt_len, bsz), proj_shape)
key_states = tf.reshape(key_states, proj_shape)
value_states = tf.reshape(value_states, proj_shape)
src_len = shape_list(key_states)[1]
attn_weights = tf.matmul(query_states, key_states, transpose_b=True)
tf.debugging.assert_equal(
shape_list(attn_weights),
[bsz * self.num_heads, tgt_len, src_len],
message=(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {shape_list(attn_weights)}"
),
)
if attention_mask is not None:
tf.debugging.assert_equal(
shape_list(attention_mask),
[bsz, 1, tgt_len, src_len],
message=(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is"
f" {shape_list(attention_mask)}"
),
)
attn_weights = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len)) + tf.cast(
attention_mask, dtype=attn_weights.dtype
)
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_weights = stable_softmax(attn_weights, axis=-1)
if layer_head_mask is not None:
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=(
f"Head mask for a single layer should be of size {(self.num_heads)}, but is"
f" {shape_list(layer_head_mask)}"
),
)
attn_weights = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
attn_weights, (bsz, self.num_heads, tgt_len, src_len)
)
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_probs = self.dropout(attn_weights, training=training)
attn_output = tf.matmul(attn_probs, value_states)
tf.debugging.assert_equal(
shape_list(attn_output),
[bsz * self.num_heads, tgt_len, self.head_dim],
message=(
f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is"
f" {shape_list(attn_output)}"
),
)
attn_output = tf.transpose(
tf.reshape(attn_output, (bsz, self.num_heads, tgt_len, self.head_dim)), (0, 2, 1, 3)
)
attn_output = tf.reshape(attn_output, (bsz, tgt_len, embed_dim))
attn_output = self.out_proj(attn_output)
attn_weights: tf.Tensor = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len))
return attn_output, attn_weights, past_key_value
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "k_proj", None) is not None:
with tf.name_scope(self.k_proj.name):
self.k_proj.build([None, None, self.embed_dim])
if getattr(self, "q_proj", None) is not None:
with tf.name_scope(self.q_proj.name):
self.q_proj.build([None, None, self.embed_dim])
if getattr(self, "v_proj", None) is not None:
with tf.name_scope(self.v_proj.name):
self.v_proj.build([None, None, self.embed_dim])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.embed_dim])
class TFLEDEncoderLayer(keras.layers.Layer):
def __init__(self, config: LEDConfig, layer_id: int, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFLEDEncoderAttention(config, layer_id, name="self_attn")
self.self_attn_layer_norm = keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.dropout = keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = keras.layers.Dropout(config.activation_dropout)
self.fc1 = keras.layers.Dense(config.encoder_ffn_dim, name="fc1")
self.fc2 = keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
self.config = config
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
layer_head_mask: tf.Tensor,
is_index_masked: tf.Tensor,
is_index_global_attn: tf.Tensor,
is_global_attn: bool,
training=False,
):
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape *(batch, seq_len, embed_dim)*
attention_mask (`tf.Tensor`): attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
layer_head_mask (`tf.Tensor`): mask for attention heads in a given layer of size
*(config.encoder_attention_heads,)*.
"""
residual = hidden_states
layer_outputs = self.self_attn(
[hidden_states, attention_mask, layer_head_mask, is_index_masked, is_index_global_attn, is_global_attn],
training=training,
)
hidden_states = layer_outputs[0]
tf.debugging.assert_equal(
shape_list(hidden_states),
shape_list(residual),
message=f"Self attn modified the shape of query {shape_list(residual)} to {shape_list(hidden_states)}",
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
return (hidden_states,) + layer_outputs[1:]
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attn", None) is not None:
with tf.name_scope(self.self_attn.name):
self.self_attn.build(None)
if getattr(self, "self_attn_layer_norm", None) is not None:
with tf.name_scope(self.self_attn_layer_norm.name):
self.self_attn_layer_norm.build([None, None, self.embed_dim])
if getattr(self, "fc1", None) is not None:
with tf.name_scope(self.fc1.name):
self.fc1.build([None, None, self.embed_dim])
if getattr(self, "fc2", None) is not None:
with tf.name_scope(self.fc2.name):
self.fc2.build([None, None, self.config.encoder_ffn_dim])
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.embed_dim])
class TFLEDDecoderLayer(keras.layers.Layer):
def __init__(self, config: LEDConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFLEDDecoderAttention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
name="self_attn",
is_decoder=True,
)
self.dropout = keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = keras.layers.Dropout(config.activation_dropout)
self.self_attn_layer_norm = keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.encoder_attn = TFLEDDecoderAttention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
name="encoder_attn",
is_decoder=True,
)
self.encoder_attn_layer_norm = keras.layers.LayerNormalization(epsilon=1e-5, name="encoder_attn_layer_norm")
self.fc1 = keras.layers.Dense(config.decoder_ffn_dim, name="fc1")
self.fc2 = keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
self.config = config
def call(
self,
hidden_states,
attention_mask: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
encoder_layer_head_mask: tf.Tensor | None = None,
past_key_value: Tuple[tf.Tensor] | None = None,
training=False,
) -> Tuple[tf.Tensor, tf.Tensor, tf.Tensor, Tuple[Tuple[tf.Tensor]]]:
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape *(batch, seq_len, embed_dim)*
attention_mask (`tf.Tensor`): attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
encoder_hidden_states (`tf.Tensor`):
cross attention input to the layer of shape *(batch, seq_len, embed_dim)*
encoder_attention_mask (`tf.Tensor`): encoder attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
layer_head_mask (`tf.Tensor`): mask for attention heads in a given layer of size
*(config.encoder_attention_heads,)*.
encoder_layer_head_mask (`tf.Tensor`): mask for encoder attention heads in a given layer of
size *(config.encoder_attention_heads,)*.
past_key_value (`Tuple(tf.Tensor)`): cached past key and value projection states
"""
residual = hidden_states
# Self-Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Cross-Attention Block
cross_attn_present_key_value = None
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, cross_attn_weights, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=encoder_layer_head_mask,
past_key_value=cross_attn_past_key_value,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
return (
hidden_states,
self_attn_weights,
cross_attn_weights,
present_key_value,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attn", None) is not None:
with tf.name_scope(self.self_attn.name):
self.self_attn.build(None)
if getattr(self, "self_attn_layer_norm", None) is not None:
with tf.name_scope(self.self_attn_layer_norm.name):
self.self_attn_layer_norm.build([None, None, self.embed_dim])
if getattr(self, "encoder_attn", None) is not None:
with tf.name_scope(self.encoder_attn.name):
self.encoder_attn.build(None)
if getattr(self, "encoder_attn_layer_norm", None) is not None:
with tf.name_scope(self.encoder_attn_layer_norm.name):
self.encoder_attn_layer_norm.build([None, None, self.embed_dim])
if getattr(self, "fc1", None) is not None:
with tf.name_scope(self.fc1.name):
self.fc1.build([None, None, self.embed_dim])
if getattr(self, "fc2", None) is not None:
with tf.name_scope(self.fc2.name):
self.fc2.build([None, None, self.config.decoder_ffn_dim])
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.embed_dim])
class TFLEDPreTrainedModel(TFPreTrainedModel):
config_class = LEDConfig
base_model_prefix = "led"
@property
def input_signature(self):
sig = super().input_signature
sig["global_attention_mask"] = tf.TensorSpec((None, None), tf.int32, name="global_attention_mask")
return sig
@dataclass
# Copied from transformers.models.longformer.modeling_tf_longformer.TFLongformerBaseModelOutput with TFLongformer->TFLEDEncoder
class TFLEDEncoderBaseModelOutput(ModelOutput):
"""
Base class for Longformer's outputs, with potential hidden states, local and global attentions.
Args:
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where `x` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first `x` values) and to every token in the attention window (remaining `attention_window
+ 1` values). Note that the first `x` values refer to tokens with fixed positions in the text, but the
remaining `attention_window + 1` values refer to tokens with relative positions: the attention weight of a
token to itself is located at index `x + attention_window / 2` and the `attention_window / 2` preceding
(succeeding) values are the attention weights to the `attention_window / 2` preceding (succeeding) tokens.
If the attention window contains a token with global attention, the attention weight at the corresponding
index is set to 0; the value should be accessed from the first `x` attention weights. If a token has global
attention, the attention weights to all other tokens in `attentions` is set to 0, the values should be
accessed from `global_attentions`.
global_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`, where `x`
is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
last_hidden_state: tf.Tensor = None
hidden_states: Tuple[tf.Tensor, ...] | None = None
attentions: Tuple[tf.Tensor, ...] | None = None
global_attentions: Tuple[tf.Tensor, ...] | None = None
@dataclass
class TFLEDSeq2SeqModelOutput(ModelOutput):
"""
Base class for model encoder's outputs that also contains : pre-computed hidden states that can speed up sequential
decoding.
Args:
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the decoder of the model.
If `past_key_values` is used only the last hidden-state of the sequences of shape `(batch_size, 1,
hidden_size)` is output.
past_key_values (`List[tf.Tensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `tf.Tensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size, num_heads,
sequence_length, embed_size_per_head)`).
Contains pre-computed hidden-states (key and values in the attention blocks) of the decoder that can be
used (see `past_key_values` input) to speed up sequential decoding.
decoder_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the decoder at the output of each layer plus the initial embedding outputs.
decoder_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
encoder_last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the encoder at the output of each layer plus the initial embedding outputs.
encoder_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the encoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
encoder_global_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`, where `x`
is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
last_hidden_state: tf.Tensor = None
past_key_values: List[tf.Tensor] | None = None
decoder_hidden_states: Tuple[tf.Tensor, ...] | None = None
decoder_attentions: Tuple[tf.Tensor, ...] | None = None
cross_attentions: Tuple[tf.Tensor, ...] | None = None
encoder_last_hidden_state: tf.Tensor | None = None
encoder_hidden_states: Tuple[tf.Tensor, ...] | None = None
encoder_attentions: Tuple[tf.Tensor, ...] | None = None
encoder_global_attentions: Tuple[tf.Tensor, ...] | None = None
@dataclass
class TFLEDSeq2SeqLMOutput(ModelOutput):
"""
Base class for sequence-to-sequence language models outputs.
Args:
loss (`tf.Tensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss.
logits (`tf.Tensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
past_key_values (`List[tf.Tensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `tf.Tensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size, num_heads,
sequence_length, embed_size_per_head)`).
Contains pre-computed hidden-states (key and values in the attention blocks) of the decoder that can be
used (see `past_key_values` input) to speed up sequential decoding.
decoder_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the decoder at the output of each layer plus the initial embedding outputs.
decoder_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
encoder_last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the encoder at the output of each layer plus the initial embedding outputs.
encoder_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the encoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
encoder_global_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`, where `x`
is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: tf.Tensor | None = None
logits: tf.Tensor = None
past_key_values: List[tf.Tensor] | None = None
decoder_hidden_states: Tuple[tf.Tensor, ...] | None = None
decoder_attentions: Tuple[tf.Tensor, ...] | None = None
cross_attentions: Tuple[tf.Tensor, ...] | None = None
encoder_last_hidden_state: tf.Tensor | None = None
encoder_hidden_states: Tuple[tf.Tensor, ...] | None = None
encoder_attentions: Tuple[tf.Tensor, ...] | None = None
encoder_global_attentions: Tuple[tf.Tensor, ...] | None = None
LED_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Args:
config ([`LEDConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
LED_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`tf.Tensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`LedTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
LED uses the `eos_token_id` as the starting token for `decoder_input_ids` generation. If `past_key_values`
is used, optionally only the last `decoder_input_ids` have to be input (see `past_key_values`).
decoder_attention_mask (`tf.Tensor` of shape `(batch_size, target_sequence_length)`, *optional*):
will be made by default and ignore pad tokens. It is not recommended to set this for most use cases.
head_mask (`tf.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tf.Tensor`, *optional*):
hidden states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
of shape `(batch_size, sequence_length, hidden_size)` is a sequence of
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@keras_serializable
class TFLEDEncoder(keras.layers.Layer):
config_class = LEDConfig
"""
Transformer encoder consisting of *config.encoder_layers* self-attention layers. Each layer is a
[`TFLEDEncoderLayer`].
Args:
config: LEDConfig
"""
def __init__(self, config: LEDConfig, embed_tokens: Optional[keras.layers.Embedding] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.dropout = keras.layers.Dropout(config.dropout)
if config.encoder_layerdrop > 0:
logger.warning("Layerdrop is currently disabled in TFLED models.")
self.layerdrop = 0.0
self.padding_idx = config.pad_token_id
if isinstance(config.attention_window, int):
assert config.attention_window % 2 == 0, "`config.attention_window` has to be an even value"
assert config.attention_window > 0, "`config.attention_window` has to be positive"
config.attention_window = [config.attention_window] * config.num_hidden_layers # one value per layer
else:
assert len(config.attention_window) == config.num_hidden_layers, (
"`len(config.attention_window)` should equal `config.num_hidden_layers`. "
f"Expected {config.num_hidden_layers}, given {len(config.attention_window)}"
)
self.attention_window = config.attention_window
self.embed_tokens = embed_tokens
self.embed_positions = TFLEDLearnedPositionalEmbedding(
config.max_encoder_position_embeddings,
config.d_model,
name="embed_positions",
)
self.layers = [TFLEDEncoderLayer(config, i, name=f"layers.{i}") for i in range(config.encoder_layers)]
self.layernorm_embedding = keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_embedding")
self.embed_dim = config.d_model
def get_embed_tokens(self):
return self.embed_tokens
def set_embed_tokens(self, embed_tokens):
self.embed_tokens = embed_tokens
@unpack_inputs
def call(
self,
input_ids=None,
inputs_embeds=None,
attention_mask=None,
global_attention_mask=None,
head_mask=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
):
"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`tf.Tensor` of shape `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
check_embeddings_within_bounds(input_ids, self.embed_tokens.input_dim)
inputs_embeds = self.embed_tokens(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if attention_mask is None:
attention_mask = tf.fill(input_shape, 1)
# merge `global_attention_mask` and `attention_mask`
if global_attention_mask is not None:
attention_mask = attention_mask * tf.cast((global_attention_mask + 1), dtype=attention_mask.dtype)
padding_len, input_ids, attention_mask, inputs_embeds = self._pad_to_window_size(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
pad_token_id=self.padding_idx,
)
input_shape = shape_list(attention_mask)
# is index masked or global attention
is_index_masked = tf.math.less(tf.cast(attention_mask, tf.int8), 1)
is_index_global_attn = tf.math.greater(tf.cast(attention_mask, tf.int8), 1)
is_global_attn = tf.math.reduce_any(is_index_global_attn)
embed_pos = self.embed_positions(input_shape)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
# check attention mask and invert
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
attention_mask = _expand_mask(attention_mask)[:, 0, 0, :]
attention_mask = attention_mask[:, :, None, None]
encoder_states = () if output_hidden_states else None
all_attentions = all_global_attentions = () if output_attentions else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
tf.debugging.assert_equal(
shape_list(head_mask)[0],
len(self.layers),
message=(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {shape_list(head_mask)[0]}."
),
)
# encoder layers
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
hidden_states_to_add = self.compute_hidden_states(hidden_states, padding_len)
encoder_states = encoder_states + (hidden_states_to_add,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop): # skip the layer
continue
layer_outputs = encoder_layer(
hidden_states=hidden_states,
attention_mask=attention_mask,
layer_head_mask=head_mask[idx] if head_mask is not None else None,
is_index_masked=is_index_masked,
is_index_global_attn=is_index_global_attn,
is_global_attn=is_global_attn,
)
hidden_states = layer_outputs[0]
if output_attentions:
# bzs x seq_len x num_attn_heads x (num_global_attn + attention_window_len + 1) => bzs x num_attn_heads x seq_len x (num_global_attn + attention_window_len + 1)
all_attentions = all_attentions + (tf.transpose(layer_outputs[1], (0, 2, 1, 3)),)
# bzs x num_attn_heads x num_global_attn x seq_len => bzs x num_attn_heads x seq_len x num_global_attn
all_global_attentions = all_global_attentions + (tf.transpose(layer_outputs[2], (0, 1, 3, 2)),)
# undo padding
# unpad `hidden_states` because the calling function is expecting a length == input_ids.size(1)
hidden_states = self.compute_hidden_states(hidden_states, padding_len)
# undo padding
if output_attentions:
all_attentions = (
tuple([state[:, :, :-padding_len, :] for state in all_attentions])
if padding_len > 0
else all_attentions
)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return TFLEDEncoderBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=encoder_states,
attentions=all_attentions,
global_attentions=all_global_attentions,
)
@tf.function
def compute_hidden_states(self, hidden_states, padding_len):
return hidden_states[:, :-padding_len] if padding_len > 0 else hidden_states
def _pad_to_window_size(
self,
input_ids,
attention_mask,
inputs_embeds,
pad_token_id,
):
"""A helper function to pad tokens and mask to work with implementation of Longformer selfattention."""
# padding
attention_window = (
self.attention_window if isinstance(self.attention_window, int) else max(self.attention_window)
)
assert attention_window % 2 == 0, f"`attention_window` should be an even value. Given {attention_window}"
input_shape = shape_list(input_ids) if input_ids is not None else shape_list(inputs_embeds)
batch_size, seq_len = input_shape[:2]
padding_len = (attention_window - seq_len % attention_window) % attention_window
if padding_len > 0:
logger.warning_once(
f"Input ids are automatically padded from {seq_len} to {seq_len + padding_len} to be a multiple of "
f"`config.attention_window`: {attention_window}"
)
paddings = tf.convert_to_tensor([[0, 0], [0, padding_len]])
if input_ids is not None:
input_ids = tf.pad(input_ids, paddings, constant_values=pad_token_id)
if inputs_embeds is not None:
if padding_len > 0:
input_ids_padding = tf.fill((batch_size, padding_len), pad_token_id)
inputs_embeds_padding = self.embed_tokens(input_ids_padding)
inputs_embeds = tf.concat([inputs_embeds, inputs_embeds_padding], axis=-2)
attention_mask = tf.pad(attention_mask, paddings, constant_values=False) # no attention on the padding tokens
return (
padding_len,
input_ids,
attention_mask,
inputs_embeds,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embed_positions", None) is not None:
with tf.name_scope(self.embed_positions.name):
self.embed_positions.build(None)
if getattr(self, "layernorm_embedding", None) is not None:
with tf.name_scope(self.layernorm_embedding.name):
self.layernorm_embedding.build([None, None, self.embed_dim])
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
class TFLEDDecoder(keras.layers.Layer):
config_class = LEDConfig
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`TFLEDDecoderLayer`]
Args:
config: LEDConfig
embed_tokens: output embedding
"""
def __init__(self, config: LEDConfig, embed_tokens: Optional[keras.layers.Embedding] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.padding_idx = config.pad_token_id
self.embed_tokens = embed_tokens
if config.decoder_layerdrop > 0:
logger.warning("Layerdrop is currently disabled in TFLED models.")
self.layerdrop = 0.0
self.embed_positions = TFLEDLearnedPositionalEmbedding(
config.max_decoder_position_embeddings,
config.d_model,
name="embed_positions",
)
self.layers = [TFLEDDecoderLayer(config, name=f"layers.{i}") for i in range(config.decoder_layers)]
self.layernorm_embedding = keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_embedding")
self.dropout = keras.layers.Dropout(config.dropout)
def set_embed_tokens(self, embed_tokens):
self.embed_tokens = embed_tokens
@unpack_inputs
def call(
self,
input_ids=None,
inputs_embeds=None,
attention_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
head_mask=None,
encoder_head_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
):
r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it. Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details. [What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_head_mask (`tf.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in encoder to avoid performing cross-attention
on hidden heads. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers` with each tuple having 2 tuples each of which has 2 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden-states of the attention blocks. Can be used to speed up
decoding. If `past_key_values` are used, the user can optionally input only the last
`decoder_input_ids` (those that don't have their past key value states given to this model) of shape
`(batch_size, 1)` instead of all `decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
past_key_values_length = shape_list(past_key_values[0][0])[2] if past_key_values is not None else 0
# embed positions
positions = self.embed_positions(input_shape, past_key_values_length)
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.embed_tokens.input_dim)
inputs_embeds = self.embed_tokens(input_ids)
hidden_states = inputs_embeds
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
if input_shape[-1] > 1:
combined_attention_mask = _make_causal_mask(input_shape, past_key_values_length=past_key_values_length)
else:
combined_attention_mask = _expand_mask(
tf.ones((input_shape[0], input_shape[1] + past_key_values_length)), tgt_len=input_shape[-1]
)
if attention_mask is not None and input_shape[-1] > 1:
combined_attention_mask = combined_attention_mask + _expand_mask(attention_mask, tgt_len=input_shape[-1])
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
encoder_attention_mask = _expand_mask(encoder_attention_mask, tgt_len=input_shape[-1])
hidden_states = self.layernorm_embedding(hidden_states + positions)
hidden_states = self.dropout(hidden_states, training=training)
# decoder layers
all_hidden_states = ()
all_self_attns = ()
all_cross_attentions = ()
present_key_values = ()
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
tf.debugging.assert_equal(
shape_list(head_mask)[0],
len(self.layers),
message=(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {shape_list(head_mask)[0]}."
),
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop):
continue
past_key_value = past_key_values[idx] if past_key_values is not None else None
hidden_states, layer_self_attn, layer_cross_attn, present_key_value = decoder_layer(
hidden_states,
attention_mask=combined_attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
layer_head_mask=head_mask[idx] if head_mask is not None else None,
encoder_layer_head_mask=encoder_head_mask[idx] if encoder_head_mask is not None else None,
past_key_value=past_key_value,
)
if use_cache:
present_key_values += (present_key_value,)
if output_attentions:
all_self_attns += (layer_self_attn,)
all_cross_attentions += (layer_cross_attn,)
if output_hidden_states:
all_hidden_states += (hidden_states,)
else:
all_hidden_states = None
all_self_attns = all_self_attns if output_attentions else None
all_cross_attentions = all_cross_attentions if output_attentions else None
present_key_values = present_key_values if use_cache else None
if not return_dict:
return tuple(
v
for v in [hidden_states, present_key_values, all_hidden_states, all_self_attns, all_cross_attentions]
if v is not None
)
else:
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=present_key_values,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embed_positions", None) is not None:
with tf.name_scope(self.embed_positions.name):
self.embed_positions.build(None)
if getattr(self, "layernorm_embedding", None) is not None:
with tf.name_scope(self.layernorm_embedding.name):
self.layernorm_embedding.build([None, None, self.config.d_model])
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
class TFLEDMainLayer(keras.layers.Layer):
config_class = LEDConfig
def __init__(self, config: LEDConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.shared = keras.layers.Embedding(
input_dim=config.vocab_size,
output_dim=config.d_model,
embeddings_initializer=keras.initializers.TruncatedNormal(stddev=self.config.init_std),
name="led.shared",
)
# Additional attribute to specify the expected name scope of the layer (for loading/storing weights)
self.shared.load_weight_prefix = "led.shared"
self.encoder = TFLEDEncoder(config, self.shared, name="encoder")
self.decoder = TFLEDDecoder(config, self.shared, name="decoder")
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.embed_tokens = self.shared
self.decoder.embed_tokens = self.shared
@unpack_inputs
def call(
self,
input_ids=None,
attention_mask=None,
decoder_input_ids=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
encoder_outputs: Optional[Union[Tuple, TFLEDEncoderBaseModelOutput]] = None,
global_attention_mask=None,
past_key_values=None,
inputs_embeds=None,
decoder_inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
if decoder_input_ids is None and decoder_inputs_embeds is None:
use_cache = False
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
global_attention_mask=global_attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a TFLEDEncoderBaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, TFLEDEncoderBaseModelOutput):
encoder_outputs = TFLEDEncoderBaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# If the user passed a TFLEDEncoderBaseModelOutput for encoder_outputs, we wrap it in a tuple when return_dict=False
elif not return_dict and not isinstance(encoder_outputs, tuple):
encoder_outputs = encoder_outputs.to_tuple()
decoder_outputs = self.decoder(
decoder_input_ids,
attention_mask=decoder_attention_mask,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
encoder_head_mask=head_mask,
past_key_values=past_key_values,
inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return TFLEDSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
encoder_global_attentions=encoder_outputs.global_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
# The shared/tied weights expect to be in the model base namespace
# Adding "/" to the end (not the start!) of a tf.name_scope puts it in the root namespace rather than
# the current one.
with tf.name_scope(self.shared.load_weight_prefix + "/" + self.shared.name + "/"):
self.shared.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "decoder", None) is not None:
with tf.name_scope(self.decoder.name):
self.decoder.build(None)
@add_start_docstrings(
"The bare LED Model outputting raw hidden-states without any specific head on top.",
LED_START_DOCSTRING,
)
class TFLEDModel(TFLEDPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.led = TFLEDMainLayer(config, name="led")
def get_encoder(self):
return self.led.encoder
def get_decoder(self):
return self.led.decoder
@unpack_inputs
@add_start_docstrings_to_model_forward(LED_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFLEDSeq2SeqModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: tf.Tensor | None = None,
decoder_input_ids: tf.Tensor | None = None,
decoder_attention_mask: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
decoder_head_mask: tf.Tensor | None = None,
encoder_outputs: tf.Tensor | None = None,
global_attention_mask: tf.Tensor | None = None,
past_key_values: Tuple[Tuple[tf.Tensor]] | None = None,
inputs_embeds: tf.Tensor | None = None,
decoder_inputs_embeds: tf.Tensor | None = None,
use_cache: bool | None = None,
output_attentions: bool | None = None,
output_hidden_states: bool | None = None,
return_dict: bool | None = None,
training: bool = False,
**kwargs,
) -> Tuple[tf.Tensor] | TFLEDSeq2SeqModelOutput:
outputs = self.led(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
encoder_outputs=encoder_outputs,
global_attention_mask=global_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
cross_attns = tf.convert_to_tensor(output.cross_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
enc_g_attns = tf.convert_to_tensor(output.encoder_global_attentions) if self.config.output_attentions else None
return TFLEDSeq2SeqModelOutput(
last_hidden_state=output.last_hidden_state,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
cross_attentions=cross_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
encoder_global_attentions=enc_g_attns,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "led", None) is not None:
with tf.name_scope(self.led.name):
self.led.build(None)
# Copied from transformers.models.bart.modeling_tf_bart.BiasLayer
class BiasLayer(keras.layers.Layer):
"""
Bias as a layer. It is used for serialization purposes: `keras.Model.save_weights` stores on a per-layer basis,
so all weights have to be registered in a layer.
"""
def __init__(self, shape, initializer, trainable, name, **kwargs):
super().__init__(name=name, **kwargs)
# Note: the name of this variable will NOT be scoped when serialized, i.e. it will not be in the format of
# "outer_layer/inner_layer/.../name:0". Instead, it will be "name:0". For further details, see:
# https://github.com/huggingface/transformers/pull/18833#issuecomment-1233090214
self.bias = self.add_weight(name=name, shape=shape, initializer=initializer, trainable=trainable)
def call(self, x):
return x + self.bias
@add_start_docstrings(
"The LED Model with a language modeling head. Can be used for summarization.",
LED_START_DOCSTRING,
)
class TFLEDForConditionalGeneration(TFLEDPreTrainedModel):
_keys_to_ignore_on_load_unexpected = [
r"led.encoder.embed_tokens.weight",
r"led.decoder.embed_tokens.weight",
]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.led = TFLEDMainLayer(config, name="led")
self.use_cache = config.use_cache
# final_bias_logits is registered as a buffer in pytorch, so not trainable for the sake of consistency.
self.bias_layer = BiasLayer(
name="final_logits_bias", shape=[1, config.vocab_size], initializer="zeros", trainable=False
)
# TODO (Joao): investigate why LED has numerical issues in XLA generate
self.supports_xla_generation = False
def get_decoder(self):
return self.led.decoder
def get_encoder(self):
return self.led.encoder
def get_bias(self):
return {"final_logits_bias": self.bias_layer.bias}
def set_bias(self, value):
# Replaces the existing layers containing bias for correct (de)serialization.
vocab_size = value["final_logits_bias"].shape[-1]
self.bias_layer = BiasLayer(
name="final_logits_bias", shape=[1, vocab_size], initializer="zeros", trainable=False
)
self.bias_layer.bias.assign(value["final_logits_bias"])
def get_output_embeddings(self):
return self.get_input_embeddings()
def set_output_embeddings(self, value):
self.set_input_embeddings(value)
@unpack_inputs
@add_start_docstrings_to_model_forward(LED_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFLEDSeq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
decoder_head_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: TFLEDEncoderBaseModelOutput | None = None,
global_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Tuple[Tuple[Union[np.ndarray, tf.Tensor]]] | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
decoder_inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: bool | None = None,
output_attentions: bool | None = None,
output_hidden_states: bool | None = None,
return_dict: bool | None = None,
labels: tf.Tensor | None = None,
training: bool = False,
) -> Tuple[tf.Tensor] | TFLEDSeq2SeqLMOutput:
"""
Returns:
Examples:
```python
>>> from transformers import AutoTokenizer, TFLEDForConditionalGeneration
>>> import tensorflow as tf
>>> mname = "allenai/led-base-16384"
>>> tokenizer = AutoTokenizer.from_pretrained(mname)
>>> TXT = "My friends are <mask> but they eat too many carbs."
>>> model = TFLEDForConditionalGeneration.from_pretrained(mname)
>>> batch = tokenizer([TXT], return_tensors="tf")
>>> logits = model(inputs=batch.input_ids).logits
>>> probs = tf.nn.softmax(logits[0])
>>> # probs[5] is associated with the mask token
```"""
if labels is not None:
use_cache = False
if decoder_input_ids is None and decoder_inputs_embeds is None:
decoder_input_ids = shift_tokens_right(
labels, self.config.pad_token_id, self.config.decoder_start_token_id
)
outputs = self.led(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
encoder_outputs=encoder_outputs,
global_attention_mask=global_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
lm_logits = tf.matmul(outputs[0], self.led.shared.weights, transpose_b=True)
lm_logits = self.bias_layer(lm_logits)
masked_lm_loss = None if labels is None else self.hf_compute_loss(labels, lm_logits)
if not return_dict:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFLEDSeq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values, # index 1 of d outputs
decoder_hidden_states=outputs.decoder_hidden_states, # index 2 of d outputs
decoder_attentions=outputs.decoder_attentions, # index 3 of d outputs
cross_attentions=outputs.cross_attentions, # index 4 of d outputs
encoder_last_hidden_state=outputs.encoder_last_hidden_state, # index 0 of encoder outputs
encoder_hidden_states=outputs.encoder_hidden_states, # 1 of e out
encoder_attentions=outputs.encoder_attentions, # 2 of e out
encoder_global_attentions=outputs.encoder_global_attentions,
)
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
cross_attns = tf.convert_to_tensor(output.cross_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
enc_g_attns = tf.convert_to_tensor(output.encoder_global_attentions) if self.config.output_attentions else None
return TFLEDSeq2SeqLMOutput(
logits=output.logits,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
cross_attentions=cross_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
encoder_global_attentions=enc_g_attns,
)
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
head_mask=None,
decoder_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
# cut decoder_input_ids if past is used
if past_key_values is not None:
decoder_input_ids = decoder_input_ids[:, -1:]
return {
"input_ids": None, # encoder_outputs is defined. input_ids not needed
"encoder_outputs": encoder_outputs,
"past_key_values": past_key_values,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"use_cache": use_cache, # change this to avoid caching (presumably for debugging)
}
def prepare_decoder_input_ids_from_labels(self, labels: tf.Tensor):
return shift_tokens_right(labels, self.config.pad_token_id, self.config.decoder_start_token_id)
def hf_compute_loss(self, labels, logits):
"""CrossEntropyLoss that ignores pad tokens"""
loss_fn = keras.losses.SparseCategoricalCrossentropy(from_logits=True, reduction=keras.losses.Reduction.NONE)
if self.config.tf_legacy_loss:
melted_labels = tf.reshape(labels, (-1,))
active_loss = tf.not_equal(melted_labels, self.config.pad_token_id)
reduced_logits = tf.boolean_mask(tf.reshape(logits, (-1, shape_list(logits)[2])), active_loss)
labels = tf.boolean_mask(melted_labels, active_loss)
return loss_fn(labels, reduced_logits)
# Clip negative labels to zero here to avoid NaNs and errors - those positions will get masked later anyway
unmasked_loss = loss_fn(tf.nn.relu(labels), logits)
# make sure only non-padding labels affect the loss
loss_mask = tf.cast(labels != self.config.pad_token_id, dtype=unmasked_loss.dtype)
masked_loss = unmasked_loss * loss_mask
reduced_masked_loss = tf.reduce_sum(masked_loss) / tf.reduce_sum(loss_mask)
return tf.reshape(reduced_masked_loss, (1,))
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "led", None) is not None:
with tf.name_scope(self.led.name):
self.led.build(None)
if getattr(self, "bias_layer", None) is not None:
with tf.name_scope(self.bias_layer.name):
self.bias_layer.build(None)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/led/modeling_led.py | # coding=utf-8
# Copyright 2021 Iz Beltagy, Matthew E. Peters, Arman Cohan and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch LED model."""
import math
import warnings
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...generation import GenerationMixin
from ...modeling_attn_mask_utils import _create_4d_causal_attention_mask
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
Seq2SeqQuestionAnsweringModelOutput,
Seq2SeqSequenceClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_led import LEDConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "allenai/led-base-16384"
_CONFIG_FOR_DOC = "LEDConfig"
def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int):
"""
Shift input ids one token to the right.
"""
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[:, 1:] = input_ids[:, :-1].clone()
shifted_input_ids[:, 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids
def _prepare_4d_attention_mask_inverted(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = mask.size()
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = mask[:, None, None, :].expand(bsz, 1, tgt_len, src_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
expanded_attention_mask = inverted_mask.masked_fill(inverted_mask.bool(), torch.finfo(dtype).min)
# make sure that global_attn_mask is positive
expanded_attention_mask = expanded_attention_mask * inverted_mask
return expanded_attention_mask
class LEDLearnedPositionalEmbedding(nn.Embedding):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, num_embeddings: int, embedding_dim: int):
super().__init__(num_embeddings, embedding_dim)
def forward(self, input_ids_shape: torch.Size, past_key_values_length: int = 0):
"""`input_ids_shape` is expected to be [bsz x seqlen]."""
bsz, seq_len = input_ids_shape[:2]
positions = torch.arange(
past_key_values_length, past_key_values_length + seq_len, dtype=torch.long, device=self.weight.device
)
return super().forward(positions)
# Copied from transformers.models.longformer.modeling_longformer.LongformerSelfAttention with Longformer->LEDEncoder
class LEDEncoderSelfAttention(nn.Module):
def __init__(self, config, layer_id):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_heads = config.num_attention_heads
self.head_dim = int(config.hidden_size / config.num_attention_heads)
self.embed_dim = config.hidden_size
self.query = nn.Linear(config.hidden_size, self.embed_dim)
self.key = nn.Linear(config.hidden_size, self.embed_dim)
self.value = nn.Linear(config.hidden_size, self.embed_dim)
# separate projection layers for tokens with global attention
self.query_global = nn.Linear(config.hidden_size, self.embed_dim)
self.key_global = nn.Linear(config.hidden_size, self.embed_dim)
self.value_global = nn.Linear(config.hidden_size, self.embed_dim)
self.dropout = config.attention_probs_dropout_prob
self.layer_id = layer_id
attention_window = config.attention_window[self.layer_id]
assert (
attention_window % 2 == 0
), f"`attention_window` for layer {self.layer_id} has to be an even value. Given {attention_window}"
assert (
attention_window > 0
), f"`attention_window` for layer {self.layer_id} has to be positive. Given {attention_window}"
self.one_sided_attn_window_size = attention_window // 2
self.config = config
def forward(
self,
hidden_states,
attention_mask=None,
layer_head_mask=None,
is_index_masked=None,
is_index_global_attn=None,
is_global_attn=None,
output_attentions=False,
):
"""
[`LEDEncoderSelfAttention`] expects *len(hidden_states)* to be multiple of *attention_window*. Padding to
*attention_window* happens in [`LEDEncoderModel.forward`] to avoid redoing the padding on each layer.
The *attention_mask* is changed in [`LEDEncoderModel.forward`] from 0, 1, 2 to:
- -10000: no attention
- 0: local attention
- +10000: global attention
"""
hidden_states = hidden_states.transpose(0, 1)
# project hidden states
query_vectors = self.query(hidden_states)
key_vectors = self.key(hidden_states)
value_vectors = self.value(hidden_states)
seq_len, batch_size, embed_dim = hidden_states.size()
assert (
embed_dim == self.embed_dim
), f"hidden_states should have embed_dim = {self.embed_dim}, but has {embed_dim}"
# normalize query
query_vectors /= math.sqrt(self.head_dim)
query_vectors = query_vectors.view(seq_len, batch_size, self.num_heads, self.head_dim).transpose(0, 1)
key_vectors = key_vectors.view(seq_len, batch_size, self.num_heads, self.head_dim).transpose(0, 1)
attn_scores = self._sliding_chunks_query_key_matmul(
query_vectors, key_vectors, self.one_sided_attn_window_size
)
# values to pad for attention probs
remove_from_windowed_attention_mask = (attention_mask != 0)[:, :, None, None]
# cast to fp32/fp16 then replace 1's with -inf
float_mask = remove_from_windowed_attention_mask.type_as(query_vectors).masked_fill(
remove_from_windowed_attention_mask, torch.finfo(query_vectors.dtype).min
)
# diagonal mask with zeros everywhere and -inf inplace of padding
diagonal_mask = self._sliding_chunks_query_key_matmul(
float_mask.new_ones(size=float_mask.size()), float_mask, self.one_sided_attn_window_size
)
# pad local attention probs
attn_scores += diagonal_mask
assert list(attn_scores.size()) == [
batch_size,
seq_len,
self.num_heads,
self.one_sided_attn_window_size * 2 + 1,
], (
f"local_attn_probs should be of size ({batch_size}, {seq_len}, {self.num_heads},"
f" {self.one_sided_attn_window_size * 2 + 1}), but is of size {attn_scores.size()}"
)
# compute local attention probs from global attention keys and contact over window dim
if is_global_attn:
# compute global attn indices required through out forward fn
(
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
) = self._get_global_attn_indices(is_index_global_attn)
# calculate global attn probs from global key
global_key_attn_scores = self._concat_with_global_key_attn_probs(
query_vectors=query_vectors,
key_vectors=key_vectors,
max_num_global_attn_indices=max_num_global_attn_indices,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero=is_local_index_no_global_attn_nonzero,
)
# concat to local_attn_probs
# (batch_size, seq_len, num_heads, extra attention count + 2*window+1)
attn_scores = torch.cat((global_key_attn_scores, attn_scores), dim=-1)
# free memory
del global_key_attn_scores
attn_probs = nn.functional.softmax(
attn_scores, dim=-1, dtype=torch.float32
) # use fp32 for numerical stability
if layer_head_mask is not None:
assert layer_head_mask.size() == (
self.num_heads,
), f"Head mask for a single layer should be of size {(self.num_heads,)}, but is {layer_head_mask.size()}"
attn_probs = layer_head_mask.view(1, 1, -1, 1) * attn_probs
# softmax sometimes inserts NaN if all positions are masked, replace them with 0
attn_probs = torch.masked_fill(attn_probs, is_index_masked[:, :, None, None], 0.0)
attn_probs = attn_probs.type_as(attn_scores)
# free memory
del attn_scores
# apply dropout
attn_probs = nn.functional.dropout(attn_probs, p=self.dropout, training=self.training)
value_vectors = value_vectors.view(seq_len, batch_size, self.num_heads, self.head_dim).transpose(0, 1)
# compute local attention output with global attention value and add
if is_global_attn:
# compute sum of global and local attn
attn_output = self._compute_attn_output_with_global_indices(
value_vectors=value_vectors,
attn_probs=attn_probs,
max_num_global_attn_indices=max_num_global_attn_indices,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
)
else:
# compute local attn only
attn_output = self._sliding_chunks_matmul_attn_probs_value(
attn_probs, value_vectors, self.one_sided_attn_window_size
)
assert attn_output.size() == (batch_size, seq_len, self.num_heads, self.head_dim), "Unexpected size"
attn_output = attn_output.transpose(0, 1).reshape(seq_len, batch_size, embed_dim).contiguous()
# compute value for global attention and overwrite to attention output
# TODO: remove the redundant computation
if is_global_attn:
global_attn_output, global_attn_probs = self._compute_global_attn_output_from_hidden(
hidden_states=hidden_states,
max_num_global_attn_indices=max_num_global_attn_indices,
layer_head_mask=layer_head_mask,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero=is_local_index_no_global_attn_nonzero,
is_index_masked=is_index_masked,
)
# get only non zero global attn output
nonzero_global_attn_output = global_attn_output[
is_local_index_global_attn_nonzero[0], :, is_local_index_global_attn_nonzero[1]
]
# overwrite values with global attention
attn_output[is_index_global_attn_nonzero[::-1]] = nonzero_global_attn_output.view(
len(is_local_index_global_attn_nonzero[0]), -1
)
# The attention weights for tokens with global attention are
# just filler values, they were never used to compute the output.
# Fill with 0 now, the correct values are in 'global_attn_probs'.
attn_probs[is_index_global_attn_nonzero] = 0
outputs = (attn_output.transpose(0, 1),)
if output_attentions:
outputs += (attn_probs,)
return outputs + (global_attn_probs,) if (is_global_attn and output_attentions) else outputs
@staticmethod
def _pad_and_transpose_last_two_dims(hidden_states_padded, padding):
"""pads rows and then flips rows and columns"""
hidden_states_padded = nn.functional.pad(
hidden_states_padded, padding
) # padding value is not important because it will be overwritten
hidden_states_padded = hidden_states_padded.view(
*hidden_states_padded.size()[:-2], hidden_states_padded.size(-1), hidden_states_padded.size(-2)
)
return hidden_states_padded
@staticmethod
def _pad_and_diagonalize(chunked_hidden_states):
"""
shift every row 1 step right, converting columns into diagonals.
Example:
```python
chunked_hidden_states: [
0.4983,
2.6918,
-0.0071,
1.0492,
-1.8348,
0.7672,
0.2986,
0.0285,
-0.7584,
0.4206,
-0.0405,
0.1599,
2.0514,
-1.1600,
0.5372,
0.2629,
]
window_overlap = num_rows = 4
```
(pad & diagonalize) => [ 0.4983, 2.6918, -0.0071, 1.0492, 0.0000, 0.0000, 0.0000
0.0000, -1.8348, 0.7672, 0.2986, 0.0285, 0.0000, 0.0000 0.0000, 0.0000, -0.7584, 0.4206,
-0.0405, 0.1599, 0.0000 0.0000, 0.0000, 0.0000, 2.0514, -1.1600, 0.5372, 0.2629 ]
"""
total_num_heads, num_chunks, window_overlap, hidden_dim = chunked_hidden_states.size()
chunked_hidden_states = nn.functional.pad(
chunked_hidden_states, (0, window_overlap + 1)
) # total_num_heads x num_chunks x window_overlap x (hidden_dim+window_overlap+1). Padding value is not important because it'll be overwritten
chunked_hidden_states = chunked_hidden_states.view(
total_num_heads, num_chunks, -1
) # total_num_heads x num_chunks x window_overlap*window_overlap+window_overlap
chunked_hidden_states = chunked_hidden_states[
:, :, :-window_overlap
] # total_num_heads x num_chunks x window_overlap*window_overlap
chunked_hidden_states = chunked_hidden_states.view(
total_num_heads, num_chunks, window_overlap, window_overlap + hidden_dim
)
chunked_hidden_states = chunked_hidden_states[:, :, :, :-1]
return chunked_hidden_states
@staticmethod
def _chunk(hidden_states, window_overlap, onnx_export: bool = False):
"""convert into overlapping chunks. Chunk size = 2w, overlap size = w"""
if not onnx_export:
# non-overlapping chunks of size = 2w
hidden_states = hidden_states.view(
hidden_states.size(0),
torch.div(hidden_states.size(1), (window_overlap * 2), rounding_mode="trunc"),
window_overlap * 2,
hidden_states.size(2),
)
# use `as_strided` to make the chunks overlap with an overlap size = window_overlap
chunk_size = list(hidden_states.size())
chunk_size[1] = chunk_size[1] * 2 - 1
chunk_stride = list(hidden_states.stride())
chunk_stride[1] = chunk_stride[1] // 2
return hidden_states.as_strided(size=chunk_size, stride=chunk_stride)
# When exporting to ONNX, use this separate logic
# have to use slow implementation since as_strided, unfold and 2d-tensor indexing aren't supported (yet) in ONNX export
# TODO replace this with
# > return hidden_states.unfold(dimension=1, size=window_overlap * 2, step=window_overlap).transpose(2, 3)
# once `unfold` is supported
# the case hidden_states.size(1) == window_overlap * 2 can also simply return hidden_states.unsqueeze(1), but that's control flow
chunk_size = [
hidden_states.size(0),
torch.div(hidden_states.size(1), window_overlap, rounding_mode="trunc") - 1,
window_overlap * 2,
hidden_states.size(2),
]
overlapping_chunks = torch.empty(chunk_size, device=hidden_states.device)
for chunk in range(chunk_size[1]):
overlapping_chunks[:, chunk, :, :] = hidden_states[
:, chunk * window_overlap : chunk * window_overlap + 2 * window_overlap, :
]
return overlapping_chunks
@staticmethod
def _mask_invalid_locations(input_tensor, affected_seq_len) -> torch.Tensor:
beginning_mask_2d = input_tensor.new_ones(affected_seq_len, affected_seq_len + 1).tril().flip(dims=[0])
beginning_mask = beginning_mask_2d[None, :, None, :]
ending_mask = beginning_mask.flip(dims=(1, 3))
beginning_input = input_tensor[:, :affected_seq_len, :, : affected_seq_len + 1]
beginning_mask = beginning_mask.expand(beginning_input.size())
input_tensor[:, :affected_seq_len, :, : affected_seq_len + 1] = torch.full_like(
beginning_input, -float("inf")
).where(beginning_mask.bool(), beginning_input)
ending_input = input_tensor[:, -affected_seq_len:, :, -(affected_seq_len + 1) :]
ending_mask = ending_mask.expand(ending_input.size())
input_tensor[:, -affected_seq_len:, :, -(affected_seq_len + 1) :] = torch.full_like(
ending_input, -float("inf")
).where(ending_mask.bool(), ending_input)
def _sliding_chunks_query_key_matmul(self, query: torch.Tensor, key: torch.Tensor, window_overlap: int):
"""
Matrix multiplication of query and key tensors using with a sliding window attention pattern. This
implementation splits the input into overlapping chunks of size 2w (e.g. 512 for pretrained LEDEncoder) with an
overlap of size window_overlap
"""
batch_size, seq_len, num_heads, head_dim = query.size()
assert (
seq_len % (window_overlap * 2) == 0
), f"Sequence length should be multiple of {window_overlap * 2}. Given {seq_len}"
assert query.size() == key.size()
chunks_count = torch.div(seq_len, window_overlap, rounding_mode="trunc") - 1
# group batch_size and num_heads dimensions into one, then chunk seq_len into chunks of size window_overlap * 2
query = query.transpose(1, 2).reshape(batch_size * num_heads, seq_len, head_dim)
key = key.transpose(1, 2).reshape(batch_size * num_heads, seq_len, head_dim)
query = self._chunk(query, window_overlap, getattr(self.config, "onnx_export", False))
key = self._chunk(key, window_overlap, getattr(self.config, "onnx_export", False))
# matrix multiplication
# bcxd: batch_size * num_heads x chunks x 2window_overlap x head_dim
# bcyd: batch_size * num_heads x chunks x 2window_overlap x head_dim
# bcxy: batch_size * num_heads x chunks x 2window_overlap x 2window_overlap
diagonal_chunked_attention_scores = torch.einsum("bcxd,bcyd->bcxy", (query, key)) # multiply
# convert diagonals into columns
diagonal_chunked_attention_scores = self._pad_and_transpose_last_two_dims(
diagonal_chunked_attention_scores, padding=(0, 0, 0, 1)
)
# allocate space for the overall attention matrix where the chunks are combined. The last dimension
# has (window_overlap * 2 + 1) columns. The first (window_overlap) columns are the window_overlap lower triangles (attention from a word to
# window_overlap previous words). The following column is attention score from each word to itself, then
# followed by window_overlap columns for the upper triangle.
diagonal_attention_scores = diagonal_chunked_attention_scores.new_zeros(
(batch_size * num_heads, chunks_count + 1, window_overlap, window_overlap * 2 + 1)
)
# copy parts from diagonal_chunked_attention_scores into the combined matrix of attentions
# - copying the main diagonal and the upper triangle
diagonal_attention_scores[:, :-1, :, window_overlap:] = diagonal_chunked_attention_scores[
:, :, :window_overlap, : window_overlap + 1
]
diagonal_attention_scores[:, -1, :, window_overlap:] = diagonal_chunked_attention_scores[
:, -1, window_overlap:, : window_overlap + 1
]
# - copying the lower triangle
diagonal_attention_scores[:, 1:, :, :window_overlap] = diagonal_chunked_attention_scores[
:, :, -(window_overlap + 1) : -1, window_overlap + 1 :
]
diagonal_attention_scores[:, 0, 1:window_overlap, 1:window_overlap] = diagonal_chunked_attention_scores[
:, 0, : window_overlap - 1, 1 - window_overlap :
]
# separate batch_size and num_heads dimensions again
diagonal_attention_scores = diagonal_attention_scores.view(
batch_size, num_heads, seq_len, 2 * window_overlap + 1
).transpose(2, 1)
self._mask_invalid_locations(diagonal_attention_scores, window_overlap)
return diagonal_attention_scores
def _sliding_chunks_matmul_attn_probs_value(
self, attn_probs: torch.Tensor, value: torch.Tensor, window_overlap: int
):
"""
Same as _sliding_chunks_query_key_matmul but for attn_probs and value tensors. Returned tensor will be of the
same shape as `attn_probs`
"""
batch_size, seq_len, num_heads, head_dim = value.size()
assert seq_len % (window_overlap * 2) == 0
assert attn_probs.size()[:3] == value.size()[:3]
assert attn_probs.size(3) == 2 * window_overlap + 1
chunks_count = torch.div(seq_len, window_overlap, rounding_mode="trunc") - 1
# group batch_size and num_heads dimensions into one, then chunk seq_len into chunks of size 2 window overlap
chunked_attn_probs = attn_probs.transpose(1, 2).reshape(
batch_size * num_heads,
torch.div(seq_len, window_overlap, rounding_mode="trunc"),
window_overlap,
2 * window_overlap + 1,
)
# group batch_size and num_heads dimensions into one
value = value.transpose(1, 2).reshape(batch_size * num_heads, seq_len, head_dim)
# pad seq_len with w at the beginning of the sequence and another window overlap at the end
padded_value = nn.functional.pad(value, (0, 0, window_overlap, window_overlap), value=-1)
# chunk padded_value into chunks of size 3 window overlap and an overlap of size window overlap
chunked_value_size = (batch_size * num_heads, chunks_count + 1, 3 * window_overlap, head_dim)
chunked_value_stride = padded_value.stride()
chunked_value_stride = (
chunked_value_stride[0],
window_overlap * chunked_value_stride[1],
chunked_value_stride[1],
chunked_value_stride[2],
)
chunked_value = padded_value.as_strided(size=chunked_value_size, stride=chunked_value_stride)
chunked_attn_probs = self._pad_and_diagonalize(chunked_attn_probs)
context = torch.einsum("bcwd,bcdh->bcwh", (chunked_attn_probs, chunked_value))
return context.view(batch_size, num_heads, seq_len, head_dim).transpose(1, 2)
@staticmethod
def _get_global_attn_indices(is_index_global_attn):
"""compute global attn indices required throughout forward pass"""
# helper variable
num_global_attn_indices = is_index_global_attn.long().sum(dim=1)
# max number of global attn indices in batch
max_num_global_attn_indices = num_global_attn_indices.max()
# indices of global attn
is_index_global_attn_nonzero = is_index_global_attn.nonzero(as_tuple=True)
# helper variable
is_local_index_global_attn = torch.arange(
max_num_global_attn_indices, device=is_index_global_attn.device
) < num_global_attn_indices.unsqueeze(dim=-1)
# location of the non-padding values within global attention indices
is_local_index_global_attn_nonzero = is_local_index_global_attn.nonzero(as_tuple=True)
# location of the padding values within global attention indices
is_local_index_no_global_attn_nonzero = (is_local_index_global_attn == 0).nonzero(as_tuple=True)
return (
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
)
def _concat_with_global_key_attn_probs(
self,
key_vectors,
query_vectors,
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
):
batch_size = key_vectors.shape[0]
# create only global key vectors
key_vectors_only_global = key_vectors.new_zeros(
batch_size, max_num_global_attn_indices, self.num_heads, self.head_dim
)
key_vectors_only_global[is_local_index_global_attn_nonzero] = key_vectors[is_index_global_attn_nonzero]
# (batch_size, seq_len, num_heads, max_num_global_attn_indices)
attn_probs_from_global_key = torch.einsum("blhd,bshd->blhs", (query_vectors, key_vectors_only_global))
# need to transpose since ONNX export only supports consecutive indexing: https://pytorch.org/docs/stable/onnx.html#writes-sets
attn_probs_from_global_key = attn_probs_from_global_key.transpose(1, 3)
attn_probs_from_global_key[
is_local_index_no_global_attn_nonzero[0], is_local_index_no_global_attn_nonzero[1], :, :
] = torch.finfo(attn_probs_from_global_key.dtype).min
attn_probs_from_global_key = attn_probs_from_global_key.transpose(1, 3)
return attn_probs_from_global_key
def _compute_attn_output_with_global_indices(
self,
value_vectors,
attn_probs,
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
):
batch_size = attn_probs.shape[0]
# cut local attn probs to global only
attn_probs_only_global = attn_probs.narrow(-1, 0, max_num_global_attn_indices)
# get value vectors for global only
value_vectors_only_global = value_vectors.new_zeros(
batch_size, max_num_global_attn_indices, self.num_heads, self.head_dim
)
value_vectors_only_global[is_local_index_global_attn_nonzero] = value_vectors[is_index_global_attn_nonzero]
# use `matmul` because `einsum` crashes sometimes with fp16
# attn = torch.einsum('blhs,bshd->blhd', (selected_attn_probs, selected_v))
# compute attn output only global
attn_output_only_global = torch.matmul(
attn_probs_only_global.transpose(1, 2).clone(), value_vectors_only_global.transpose(1, 2).clone()
).transpose(1, 2)
# reshape attn probs
attn_probs_without_global = attn_probs.narrow(
-1, max_num_global_attn_indices, attn_probs.size(-1) - max_num_global_attn_indices
).contiguous()
# compute attn output with global
attn_output_without_global = self._sliding_chunks_matmul_attn_probs_value(
attn_probs_without_global, value_vectors, self.one_sided_attn_window_size
)
return attn_output_only_global + attn_output_without_global
def _compute_global_attn_output_from_hidden(
self,
hidden_states,
max_num_global_attn_indices,
layer_head_mask,
is_local_index_global_attn_nonzero,
is_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
is_index_masked,
):
seq_len, batch_size = hidden_states.shape[:2]
# prepare global hidden states
global_attn_hidden_states = hidden_states.new_zeros(max_num_global_attn_indices, batch_size, self.embed_dim)
global_attn_hidden_states[is_local_index_global_attn_nonzero[::-1]] = hidden_states[
is_index_global_attn_nonzero[::-1]
]
# global key, query, value
global_query_vectors_only_global = self.query_global(global_attn_hidden_states)
global_key_vectors = self.key_global(hidden_states)
global_value_vectors = self.value_global(hidden_states)
# normalize
global_query_vectors_only_global /= math.sqrt(self.head_dim)
# reshape
global_query_vectors_only_global = (
global_query_vectors_only_global.contiguous()
.view(max_num_global_attn_indices, batch_size * self.num_heads, self.head_dim)
.transpose(0, 1)
) # (batch_size * self.num_heads, max_num_global_attn_indices, head_dim)
global_key_vectors = (
global_key_vectors.contiguous().view(-1, batch_size * self.num_heads, self.head_dim).transpose(0, 1)
) # batch_size * self.num_heads, seq_len, head_dim)
global_value_vectors = (
global_value_vectors.contiguous().view(-1, batch_size * self.num_heads, self.head_dim).transpose(0, 1)
) # batch_size * self.num_heads, seq_len, head_dim)
# compute attn scores
global_attn_scores = torch.bmm(global_query_vectors_only_global, global_key_vectors.transpose(1, 2))
assert list(global_attn_scores.size()) == [
batch_size * self.num_heads,
max_num_global_attn_indices,
seq_len,
], (
"global_attn_scores have the wrong size. Size should be"
f" {(batch_size * self.num_heads, max_num_global_attn_indices, seq_len)}, but is"
f" {global_attn_scores.size()}."
)
global_attn_scores = global_attn_scores.view(batch_size, self.num_heads, max_num_global_attn_indices, seq_len)
# need to transpose since ONNX export only supports consecutive indexing: https://pytorch.org/docs/stable/onnx.html#writes-sets
global_attn_scores = global_attn_scores.transpose(1, 2)
global_attn_scores[
is_local_index_no_global_attn_nonzero[0], is_local_index_no_global_attn_nonzero[1], :, :
] = torch.finfo(global_attn_scores.dtype).min
global_attn_scores = global_attn_scores.transpose(1, 2)
global_attn_scores = global_attn_scores.masked_fill(
is_index_masked[:, None, None, :],
torch.finfo(global_attn_scores.dtype).min,
)
global_attn_scores = global_attn_scores.view(batch_size * self.num_heads, max_num_global_attn_indices, seq_len)
# compute global attn probs
global_attn_probs_float = nn.functional.softmax(
global_attn_scores, dim=-1, dtype=torch.float32
) # use fp32 for numerical stability
# apply layer head masking
if layer_head_mask is not None:
assert layer_head_mask.size() == (
self.num_heads,
), f"Head mask for a single layer should be of size {(self.num_heads,)}, but is {layer_head_mask.size()}"
global_attn_probs_float = layer_head_mask.view(1, -1, 1, 1) * global_attn_probs_float.view(
batch_size, self.num_heads, max_num_global_attn_indices, seq_len
)
global_attn_probs_float = global_attn_probs_float.view(
batch_size * self.num_heads, max_num_global_attn_indices, seq_len
)
global_attn_probs = nn.functional.dropout(
global_attn_probs_float.type_as(global_attn_scores), p=self.dropout, training=self.training
)
# global attn output
global_attn_output = torch.bmm(global_attn_probs, global_value_vectors)
assert list(global_attn_output.size()) == [
batch_size * self.num_heads,
max_num_global_attn_indices,
self.head_dim,
], (
"global_attn_output tensor has the wrong size. Size should be"
f" {(batch_size * self.num_heads, max_num_global_attn_indices, self.head_dim)}, but is"
f" {global_attn_output.size()}."
)
global_attn_probs = global_attn_probs.view(batch_size, self.num_heads, max_num_global_attn_indices, seq_len)
global_attn_output = global_attn_output.view(
batch_size, self.num_heads, max_num_global_attn_indices, self.head_dim
)
return global_attn_output, global_attn_probs
class LEDEncoderAttention(nn.Module):
def __init__(self, config, layer_id):
super().__init__()
self.longformer_self_attn = LEDEncoderSelfAttention(config, layer_id=layer_id)
self.output = nn.Linear(config.d_model, config.d_model)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
is_index_masked: Optional[torch.Tensor] = None,
is_index_global_attn: Optional[torch.Tensor] = None,
is_global_attn: Optional[bool] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
self_outputs = self.longformer_self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
is_index_masked=is_index_masked,
is_index_global_attn=is_index_global_attn,
is_global_attn=is_global_attn,
output_attentions=output_attentions,
)
attn_output = self.output(self_outputs[0])
outputs = (attn_output,) + self_outputs[1:]
return outputs
class LEDDecoderAttention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
if self.head_dim * num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, embed_dim = hidden_states.size()
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0], key_states], dim=2)
value_states = torch.cat([past_key_value[1], value_states], dim=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, tgt_len, bsz).view(*proj_shape)
key_states = key_states.view(*proj_shape)
value_states = value_states.view(*proj_shape)
src_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (bsz * self.num_heads, tgt_len, src_len):
raise ValueError(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (bsz, 1, tgt_len, src_len):
raise ValueError(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is {attention_mask.size()}"
)
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len) + attention_mask
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if layer_head_mask is not None:
if layer_head_mask.size() != (self.num_heads,):
raise ValueError(
f"Head mask for a single layer should be of size {(self.num_heads,)}, but is"
f" {layer_head_mask.size()}"
)
attn_weights = layer_head_mask.view(1, -1, 1, 1) * attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to be reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights_reshaped.view(bsz * self.num_heads, tgt_len, src_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (bsz * self.num_heads, tgt_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = (
attn_output.view(bsz, self.num_heads, tgt_len, self.head_dim)
.transpose(1, 2)
.reshape(bsz, tgt_len, embed_dim)
)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped, past_key_value
class LEDEncoderLayer(nn.Module):
def __init__(self, config: LEDConfig, layer_id: int):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = LEDEncoderAttention(config, layer_id)
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.fc1 = nn.Linear(self.embed_dim, config.encoder_ffn_dim)
self.fc2 = nn.Linear(config.encoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
layer_head_mask: torch.Tensor,
is_index_masked=None,
is_index_global_attn=None,
is_global_attn=None,
output_attentions=False,
):
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape *(batch, seq_len, embed_dim)*
attention_mask (`torch.FloatTensor`): attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
*(encoder_attention_heads,)*.
"""
residual = hidden_states
attn_outputs = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
is_index_masked=is_index_masked,
is_index_global_attn=is_index_global_attn,
is_global_attn=is_global_attn,
output_attentions=output_attentions,
)
hidden_states = attn_outputs[0]
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
if hidden_states.dtype == torch.float16 and (
torch.isinf(hidden_states).any() or torch.isnan(hidden_states).any()
):
clamp_value = torch.finfo(hidden_states.dtype).max - 1000
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
return (hidden_states,) + attn_outputs[1:]
class LEDDecoderLayer(nn.Module):
def __init__(self, config: LEDConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = LEDDecoderAttention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.encoder_attn = LEDDecoderAttention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
)
self.encoder_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.fc1 = nn.Linear(self.embed_dim, config.decoder_ffn_dim)
self.fc2 = nn.Linear(config.decoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
cross_attn_layer_head_mask: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = True,
):
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape *(batch, seq_len, embed_dim)*
attention_mask (`torch.FloatTensor`): attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
encoder_hidden_states (`torch.FloatTensor`):
cross attention input to the layer of shape *(batch, seq_len, embed_dim)*
encoder_attention_mask (`torch.FloatTensor`): encoder attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
*(decoder_attention_heads,)*.
cross_attn_layer_head_mask (`torch.FloatTensor`): mask for encoder attention heads in a given layer of
size *(decoder_attention_heads,)*.
past_key_value (`Tuple(torch.FloatTensor)`): cached past key and value projection states
output_attentions (`bool`): Whether the base model outputs attentions.
This requires the attentions tensor to be reshaped in this function.
"""
residual = hidden_states
# Self-Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Cross-Attention Block
cross_attn_present_key_value = None
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, cross_attn_weights, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=cross_attn_past_key_value,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
if use_cache:
outputs += (present_key_value,)
return outputs
class LEDClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(
self,
input_dim: int,
inner_dim: int,
num_classes: int,
pooler_dropout: float,
):
super().__init__()
self.dense = nn.Linear(input_dim, inner_dim)
self.dropout = nn.Dropout(p=pooler_dropout)
self.out_proj = nn.Linear(inner_dim, num_classes)
def forward(self, hidden_states: torch.Tensor):
hidden_states = self.dropout(hidden_states)
hidden_states = self.dense(hidden_states)
hidden_states = torch.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
class LEDPreTrainedModel(PreTrainedModel):
config_class = LEDConfig
base_model_prefix = "led"
supports_gradient_checkpointing = True
def _init_weights(self, module):
std = self.config.init_std
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
@property
def dummy_inputs(self):
pad_token = self.config.pad_token_id
input_ids = torch.tensor([[0, 6, 10, 4, 2], [0, 8, 12, 2, pad_token]], device=self.device)
dummy_inputs = {
"attention_mask": input_ids.ne(pad_token),
"input_ids": input_ids,
}
return dummy_inputs
@dataclass
# Copied from transformers.models.longformer.modeling_longformer.LongformerBaseModelOutput with Longformer->LEDEncoder
class LEDEncoderBaseModelOutput(ModelOutput):
"""
Base class for LEDEncoder's outputs, with potential hidden states, local and global attentions.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where `x` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first `x` values) and to every token in the attention window (remaining `attention_window
+ 1` values). Note that the first `x` values refer to tokens with fixed positions in the text, but the
remaining `attention_window + 1` values refer to tokens with relative positions: the attention weight of a
token to itself is located at index `x + attention_window / 2` and the `attention_window / 2` preceding
(succeeding) values are the attention weights to the `attention_window / 2` preceding (succeeding) tokens.
If the attention window contains a token with global attention, the attention weight at the corresponding
index is set to 0; the value should be accessed from the first `x` attention weights. If a token has global
attention, the attention weights to all other tokens in `attentions` is set to 0, the values should be
accessed from `global_attentions`.
global_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`,
where `x` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
last_hidden_state: torch.FloatTensor
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
global_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class LEDSeq2SeqModelOutput(ModelOutput):
"""
Base class for model encoder's outputs that also contains : pre-computed hidden states that can speed up sequential
decoding.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the decoder of the model.
If `past_key_values` is used only the last hidden-state of the sequences of shape `(batch_size, 1,
hidden_size)` is output.
past_key_values (`List[torch.FloatTensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `torch.FloatTensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size,
num_heads, sequence_length, embed_size_per_head)`).
Contains pre-computed hidden-states (key and values in the attention blocks) of the decoder that can be
used (see `past_key_values` input) to speed up sequential decoding.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the decoder at the output of each layer plus the initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the encoder at the output of each layer plus the initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the encoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
encoder_global_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`,
where `x` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
last_hidden_state: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
decoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
decoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_last_hidden_state: Optional[torch.FloatTensor] = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_global_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class LEDSeq2SeqLMOutput(ModelOutput):
"""
Base class for sequence-to-sequence language models outputs.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss.
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
past_key_values (`List[torch.FloatTensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `torch.FloatTensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size,
num_heads, sequence_length, embed_size_per_head)`).
Contains pre-computed hidden-states (key and values in the attention blocks) of the decoder that can be
used (see `past_key_values` input) to speed up sequential decoding.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the decoder at the output of each layer plus the initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the encoder at the output of each layer plus the initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the encoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
encoder_global_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`,
where `x` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
decoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
decoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_last_hidden_state: Optional[torch.FloatTensor] = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_global_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class LEDSeq2SeqSequenceClassifierOutput(ModelOutput):
"""
Base class for outputs of sequence-to-sequence sentence classification models.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
past_key_values (`List[torch.FloatTensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `torch.FloatTensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size,
num_heads, sequence_length, embed_size_per_head)`).
Contains pre-computed hidden-states (key and values in the attention blocks) of the decoder that can be
used (see `past_key_values` input) to speed up sequential decoding.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the decoder at the output of each layer plus the initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the encoder at the output of each layer plus the initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the encoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
encoder_global_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`,
where `x` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
decoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
decoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_last_hidden_state: Optional[torch.FloatTensor] = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_global_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class LEDSeq2SeqQuestionAnsweringModelOutput(ModelOutput):
"""
Base class for outputs of sequence-to-sequence question answering models.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Total span extraction loss is the sum of a Cross-Entropy for the start and end positions.
start_logits (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Span-start scores (before SoftMax).
end_logits (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Span-end scores (before SoftMax).
past_key_values (`List[torch.FloatTensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `torch.FloatTensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size,
num_heads, sequence_length, embed_size_per_head)`).
Contains pre-computed hidden-states (key and values in the attention blocks) of the decoder that can be
used (see `past_key_values` input) to speed up sequential decoding.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the decoder at the output of each layer plus the initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the encoder at the output of each layer plus the initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the encoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
encoder_global_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, x)`,
where `x` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[torch.FloatTensor] = None
start_logits: torch.FloatTensor = None
end_logits: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
decoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
decoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_last_hidden_state: Optional[torch.FloatTensor] = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
encoder_global_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
LED_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. See the superclass documentation for the generic methods the library
implements for all its models (such as downloading or saving, resizing the input embeddings, pruning heads etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for general usage and behavior.
Parameters:
config ([`LEDConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
LED_GENERATION_EXAMPLE = r"""
Summarization example:
```python
>>> import torch
>>> from transformers import AutoTokenizer, LEDForConditionalGeneration
>>> model = LEDForConditionalGeneration.from_pretrained("allenai/led-large-16384-arxiv")
>>> tokenizer = AutoTokenizer.from_pretrained("allenai/led-large-16384-arxiv")
>>> ARTICLE_TO_SUMMARIZE = '''Transformers (Vaswani et al., 2017) have achieved state-of-the-art
... results in a wide range of natural language tasks including generative language modeling
... (Dai et al., 2019; Radford et al., 2019) and discriminative ... language understanding (Devlin et al., 2019).
... This success is partly due to the self-attention component which enables the network to capture contextual
... information from the entire sequence. While powerful, the memory and computational requirements of
... self-attention grow quadratically with sequence length, making it infeasible (or very expensive) to
... process long sequences. To address this limitation, we present Longformer, a modified Transformer
... architecture with a self-attention operation that scales linearly with the sequence length, making it
... versatile for processing long documents (Fig 1). This is an advantage for natural language tasks such as
... long document classification, question answering (QA), and coreference resolution, where existing approaches
... partition or shorten the long context into smaller sequences that fall within the typical 512 token limit
... of BERT-style pretrained models. Such partitioning could potentially result in loss of important
... cross-partition information, and to mitigate this problem, existing methods often rely on complex
... architectures to address such interactions. On the other hand, our proposed Longformer is able to build
... contextual representations of the entire context using multiple layers of attention, reducing the need for
... task-specific architectures.'''
>>> inputs = tokenizer.encode(ARTICLE_TO_SUMMARIZE, return_tensors="pt")
>>> # Global attention on the first token (cf. Beltagy et al. 2020)
>>> global_attention_mask = torch.zeros_like(inputs)
>>> global_attention_mask[:, 0] = 1
>>> # Generate Summary
>>> summary_ids = model.generate(inputs, global_attention_mask=global_attention_mask, num_beams=3, max_length=32)
>>> print(tokenizer.decode(summary_ids[0], skip_special_tokens=True, clean_up_tokenization_spaces=True))
```
"""
LED_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`LedTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
LED uses the `eos_token_id` as the starting token for `decoder_input_ids` generation. If `past_key_values`
is used, optionally only the last `decoder_input_ids` have to be input (see `past_key_values`).
decoder_attention_mask (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should read [`modeling_led._prepare_decoder_inputs`] and modify
to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more information on the
default strategy.
global_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to decide the attention given on each token, local attention or global attention for the encoder.
Tokens with global attention attends to all other tokens, and all other tokens attend to them. This is
important for task-specific finetuning because it makes the model more flexible at representing the task.
For example, for classification, the <s> token should be given global attention. For QA, all question
tokens should also have global attention. Please refer to the [Longformer
paper](https://arxiv.org/abs/2004.05150) for more details. Mask values selected in `[0, 1]`:
- 0 for local attention (a sliding window attention),
- 1 for global attention (tokens that attend to all other tokens, and all other tokens attend to them).
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
decoder_inputs_embeds (`torch.FloatTensor` of shape `(batch_size, target_sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `decoder_input_ids` you can choose to directly pass an embedded
representation. If `past_key_values` is used, optionally only the last `decoder_inputs_embeds` have to be
input (see `past_key_values`). This is useful if you want more control over how to convert
`decoder_input_ids` indices into associated vectors than the model's internal embedding lookup matrix.
If `decoder_input_ids` and `decoder_inputs_embeds` are both unset, `decoder_inputs_embeds` takes the value
of `inputs_embeds`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class LEDEncoder(LEDPreTrainedModel):
"""
Transformer encoder consisting of *config.encoder_layers* self-attention layers. Each layer is a
[`LEDEncoderLayer`].
Args:
config: LEDConfig
embed_tokens (nn.Embedding): output embedding
"""
def __init__(self, config: LEDConfig, embed_tokens: Optional[nn.Embedding] = None):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.encoder_layerdrop
embed_dim = config.d_model
self.padding_idx = config.pad_token_id
self.max_source_positions = config.max_encoder_position_embeddings
if isinstance(config.attention_window, int):
if config.attention_window % 2 != 0:
raise ValueError("`config.attention_window` has to be an even value")
if config.attention_window <= 0:
raise ValueError("`config.attention_window` has to be positive")
config.attention_window = [config.attention_window] * config.num_hidden_layers # one value per layer
else:
if len(config.attention_window) != config.num_hidden_layers:
raise ValueError(
"`len(config.attention_window)` should equal `config.num_hidden_layers`. "
f"Expected {config.num_hidden_layers}, given {len(config.attention_window)}"
)
if embed_tokens is not None:
self.embed_tokens = embed_tokens
else:
self.embed_tokens = nn.Embedding(config.vocab_size, embed_dim, self.padding_idx)
self.embed_positions = LEDLearnedPositionalEmbedding(
self.max_source_positions,
embed_dim,
)
self.layers = nn.ModuleList([LEDEncoderLayer(config, i) for i in range(config.encoder_layers)])
self.layernorm_embedding = nn.LayerNorm(embed_dim)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def _merge_to_attention_mask(self, attention_mask: torch.Tensor, global_attention_mask: torch.Tensor):
# longformer self-attention expects attention mask to have 0 (no attn), 1 (local attn), 2 (global attn)
# (global_attention_mask + 1) => 1 for local attention, 2 for global attention
# => final attention_mask => 0 for no attention, 1 for local attention 2 for global attention
if attention_mask is not None:
attention_mask = attention_mask * (global_attention_mask + 1)
else:
# simply use `global_attention_mask` as `attention_mask`
# if no `attention_mask` is given
attention_mask = global_attention_mask + 1
return attention_mask
def _pad_to_window_size(
self,
input_ids: torch.Tensor,
attention_mask: torch.Tensor,
inputs_embeds: torch.Tensor,
pad_token_id: int,
):
"""A helper function to pad tokens and mask to work with implementation of Longformer self-attention."""
# padding
attention_window = (
self.config.attention_window
if isinstance(self.config.attention_window, int)
else max(self.config.attention_window)
)
if attention_window % 2 != 0:
raise ValueError(f"`attention_window` should be an even value. Given {attention_window}")
input_shape = input_ids.shape if input_ids is not None else inputs_embeds.shape
batch_size, seq_len = input_shape[:2]
padding_len = (attention_window - seq_len % attention_window) % attention_window
if padding_len > 0:
logger.warning_once(
f"Input ids are automatically padded from {seq_len} to {seq_len + padding_len} to be a multiple of "
f"`config.attention_window`: {attention_window}"
)
if input_ids is not None:
input_ids = nn.functional.pad(input_ids, (0, padding_len), value=pad_token_id)
if inputs_embeds is not None:
input_ids_padding = inputs_embeds.new_full(
(batch_size, padding_len),
self.config.pad_token_id,
dtype=torch.long,
)
inputs_embeds_padding = self.embed_tokens(input_ids_padding)
inputs_embeds = torch.cat([inputs_embeds, inputs_embeds_padding], dim=-2)
attention_mask = nn.functional.pad(
attention_mask, (0, padding_len), value=False
) # no attention on the padding tokens
return padding_len, input_ids, attention_mask, inputs_embeds
def forward(
self,
input_ids=None,
attention_mask=None,
global_attention_mask=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
global_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to decide the attention given on each token, local attention or global attention for the encoder.
Tokens with global attention attends to all other tokens, and all other tokens attend to them. This is
important for task-specific finetuning because it makes the model more flexible at representing the
task. For example, for classification, the <s> token should be given global attention. For QA, all
question tokens should also have global attention. Please refer to the [Longformer
paper](https://arxiv.org/abs/2004.05150) for more details. Mask values selected in `[0, 1]`:
- 0 for local attention (a sliding window attention),
- 1 for global attention (tokens that attend to all other tokens, and all other tokens attend to them).
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# check input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is None and inputs_embeds is None:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids)
# create default attention_mask
if attention_mask is None:
attention_mask = torch.ones(inputs_embeds.size()[:-1], device=inputs_embeds.device, dtype=torch.long)
# merge `global_attention_mask` and `attention_mask`
if global_attention_mask is not None:
attention_mask = self._merge_to_attention_mask(attention_mask, global_attention_mask)
# pad input if necessary
padding_len, input_ids, attention_mask, inputs_embeds = self._pad_to_window_size(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
pad_token_id=self.config.pad_token_id,
)
# retrieve input_shape
if input_ids is not None:
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
# convert attention_mask to float
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, seq_len]; 1 -> 0.0; 0 -> "-inf"
attention_mask = _prepare_4d_attention_mask_inverted(attention_mask, inputs_embeds.dtype)[:, 0, 0, :]
# get masking tensors
is_index_masked = attention_mask < 0
is_index_global_attn = attention_mask > 0
is_global_attn = is_index_global_attn.flatten().any().item()
embed_pos = self.embed_positions(input_shape)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
all_global_attentions = () if (output_attentions and is_global_attn) else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
if head_mask.size()[0] != len(self.layers):
raise ValueError(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = torch.rand([])
if self.training and (dropout_probability < self.layerdrop): # skip the layer
layer_outputs = (None, None, None)
else:
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
encoder_layer.__call__,
hidden_states,
attention_mask,
head_mask[idx] if head_mask is not None else None,
is_index_masked,
is_index_global_attn,
is_global_attn,
output_attentions,
)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask=attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
is_index_masked=is_index_masked,
is_index_global_attn=is_index_global_attn,
is_global_attn=is_global_attn,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
# bzs x seq_len x num_attn_heads x (num_global_attn + attention_window_len + 1) => bzs x num_attn_heads x seq_len x (num_global_attn + attention_window_len + 1)
all_attentions = all_attentions + (layer_outputs[1].transpose(1, 2),)
if is_global_attn:
# bzs x num_attn_heads x num_global_attn x seq_len => bzs x num_attn_heads x seq_len x num_global_attn
all_global_attentions = all_global_attentions + (layer_outputs[2].transpose(2, 3),)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# undo padding
if padding_len > 0:
# unpad `hidden_states` because the calling function is expecting a length == input_ids.size(1)
hidden_states = hidden_states[:, :-padding_len]
if output_hidden_states:
encoder_states = tuple([state[:, :-padding_len] for state in encoder_states])
if output_attentions:
all_attentions = tuple([state[:, :, :-padding_len, :] for state in all_attentions])
if not return_dict:
return tuple(
v for v in [hidden_states, encoder_states, all_attentions, all_global_attentions] if v is not None
)
return LEDEncoderBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=encoder_states,
attentions=all_attentions,
global_attentions=all_global_attentions,
)
class LEDDecoder(LEDPreTrainedModel):
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`LEDDecoderLayer`]
Args:
config: LEDConfig
embed_tokens (nn.Embedding): output embedding
"""
def __init__(self, config: LEDConfig, embed_tokens: Optional[nn.Embedding] = None):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.decoder_layerdrop
self.padding_idx = config.pad_token_id
self.max_target_positions = config.max_decoder_position_embeddings
if embed_tokens is not None:
self.embed_tokens = embed_tokens
else:
self.embed_tokens = nn.Embedding(config.vocab_size, config.d_model, self.padding_idx)
self.embed_positions = LEDLearnedPositionalEmbedding(
self.max_target_positions,
config.d_model,
)
self.layers = nn.ModuleList([LEDDecoderLayer(config) for _ in range(config.decoder_layers)])
self.layernorm_embedding = nn.LayerNorm(config.d_model)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def forward(
self,
input_ids=None,
attention_mask=None,
global_attention_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
head_mask=None,
cross_attn_head_mask=None,
past_key_values=None,
inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
global_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to decide the attention given on each token, local attention or global attention. Tokens with
global attention attends to all other tokens, and all other tokens attend to them. This is important
for task-specific finetuning because it makes the model more flexible at representing the task. For
example, for classification, the <s> token should be given global attention. For QA, all question
tokens should also have global attention. Please refer to the [Longformer
paper](https://arxiv.org/abs/2004.05150) for more details. Mask values selected in `[0, 1]`:
- 0 for local attention (a sliding window attention),
- 1 for global attention (tokens that attend to all other tokens, and all other tokens attend to them).
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`torch.LongTensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of
shape `(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the
cross-attention blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# retrieve input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids)
# create causal mask
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
combined_attention_mask = None
if input_shape[-1] > 1:
combined_attention_mask = _create_4d_causal_attention_mask(
input_shape, inputs_embeds.dtype, inputs_embeds.device, past_key_values_length=past_key_values_length
)
if attention_mask is not None and combined_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
combined_attention_mask = combined_attention_mask + _prepare_4d_attention_mask_inverted(
attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1]
)
# expand encoder attention mask
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
encoder_attention_mask = _prepare_4d_attention_mask_inverted(
encoder_attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1]
)
# embed positions
positions = self.embed_positions(input_shape, past_key_values_length)
hidden_states = inputs_embeds + positions
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if output_attentions else None
next_decoder_cache = () if use_cache else None
# check if head_mask/cross_attn_head_mask has a correct number of layers specified if desired
for attn_mask, mask_name in zip([head_mask, cross_attn_head_mask], ["head_mask", "cross_attn_head_mask"]):
if attn_mask is not None:
if attn_mask.size()[0] != len(self.layers):
raise ValueError(
f"The `{mask_name}` should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop:
continue
past_key_value = past_key_values[idx] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
combined_attention_mask,
encoder_hidden_states,
encoder_attention_mask,
head_mask[idx] if head_mask is not None else None,
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None,
None,
output_attentions,
use_cache,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=combined_attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
cross_attn_layer_head_mask=(
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None
),
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[3 if output_attentions else 1],)
if output_attentions:
all_self_attns += (layer_outputs[1],)
all_cross_attentions += (layer_outputs[2],)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if not return_dict:
return tuple(
v
for v in [hidden_states, next_cache, all_hidden_states, all_self_attns, all_cross_attentions]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
@add_start_docstrings(
"The bare LED Model outputting raw hidden-states without any specific head on top.",
LED_START_DOCSTRING,
)
class LEDModel(LEDPreTrainedModel):
_tied_weights_keys = ["decoder.embed_tokens.weight", "encoder.embed_tokens.weight"]
def __init__(self, config: LEDConfig):
super().__init__(config)
padding_idx, vocab_size = config.pad_token_id, config.vocab_size
self.shared = nn.Embedding(vocab_size, config.d_model, padding_idx)
self.encoder = LEDEncoder(config, self.shared)
self.decoder = LEDDecoder(config, self.shared)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, value):
self.shared = value
self.encoder.embed_tokens = self.shared
self.decoder.embed_tokens = self.shared
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
@add_start_docstrings_to_model_forward(LED_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=Seq2SeqModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
global_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], LEDSeq2SeqModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# Using this like Bart, as LED is derived from it. So far
# No checkpoint on the hub exists that uses that in practice.
# https://github.com/huggingface/transformers/blob/ac3cb660cad283163f7c73cad511124e845ca388/src/transformers/models/bart/modeling_bart.py#L1153
if decoder_input_ids is None and decoder_inputs_embeds is None:
decoder_input_ids = shift_tokens_right(
input_ids, self.config.pad_token_id, self.config.decoder_start_token_id
)
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
global_attention_mask=global_attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a LEDEncoderBaseModelOutput when return_dict=False
elif return_dict and not isinstance(encoder_outputs, LEDEncoderBaseModelOutput):
encoder_outputs = LEDEncoderBaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
global_attentions=encoder_outputs[3] if len(encoder_outputs) > 3 else None,
)
# decoder outputs consists of (dec_features, past_key_value, dec_hidden, dec_attn)
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return LEDSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
encoder_global_attentions=encoder_outputs.global_attentions,
)
@add_start_docstrings(
"The LED Model with a language modeling head. Can be used for summarization.", LED_START_DOCSTRING
)
class LEDForConditionalGeneration(LEDPreTrainedModel, GenerationMixin):
base_model_prefix = "led"
_keys_to_ignore_on_load_missing = ["final_logits_bias"]
_tied_weights_keys = ["decoder.embed_tokens.weight", "encoder.embed_tokens.weight", "lm_head.weight"]
def __init__(self, config: LEDConfig):
super().__init__(config)
self.led = LEDModel(config)
self.register_buffer("final_logits_bias", torch.zeros((1, self.led.shared.num_embeddings)))
self.lm_head = nn.Linear(config.d_model, self.led.shared.num_embeddings, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_encoder(self):
return self.led.get_encoder()
def get_decoder(self):
return self.led.get_decoder()
def resize_token_embeddings(self, new_num_tokens: int, pad_to_multiple_of: Optional[int] = None) -> nn.Embedding:
new_embeddings = super().resize_token_embeddings(new_num_tokens, pad_to_multiple_of)
self._resize_final_logits_bias(new_embeddings.weight.shape[0])
return new_embeddings
def _resize_final_logits_bias(self, new_num_tokens: int) -> None:
old_num_tokens = self.final_logits_bias.shape[-1]
if new_num_tokens <= old_num_tokens:
new_bias = self.final_logits_bias[:, :new_num_tokens]
else:
extra_bias = torch.zeros((1, new_num_tokens - old_num_tokens), device=self.final_logits_bias.device)
new_bias = torch.cat([self.final_logits_bias, extra_bias], dim=1)
self.register_buffer("final_logits_bias", new_bias)
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
@add_start_docstrings_to_model_forward(LED_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
@add_end_docstrings(LED_GENERATION_EXAMPLE)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
global_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], LEDSeq2SeqLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
Conditional generation example:
```python
>>> from transformers import AutoTokenizer, LEDForConditionalGeneration
>>> tokenizer = AutoTokenizer.from_pretrained("allenai/led-base-16384")
>>> TXT = "My friends are <mask> but they eat too many carbs."
>>> model = LEDForConditionalGeneration.from_pretrained("allenai/led-base-16384")
>>> input_ids = tokenizer([TXT], return_tensors="pt")["input_ids"]
>>> prediction = model.generate(input_ids)[0]
>>> print(tokenizer.decode(prediction, skip_special_tokens=True))
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
if use_cache:
logger.warning("The `use_cache` argument is changed to `False` since `labels` is provided.")
use_cache = False
if decoder_input_ids is None and decoder_inputs_embeds is None:
decoder_input_ids = shift_tokens_right(
labels, self.config.pad_token_id, self.config.decoder_start_token_id
)
outputs = self.led(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
encoder_outputs=encoder_outputs,
global_attention_mask=global_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
lm_logits = self.lm_head(outputs[0]) + self.final_logits_bias
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(lm_logits.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return LEDSeq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
encoder_global_attentions=outputs.encoder_global_attentions,
)
def prepare_decoder_input_ids_from_labels(self, labels: torch.Tensor):
return shift_tokens_right(labels, self.config.pad_token_id, self.config.decoder_start_token_id)
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
# cached cross_attention states don't have to be reordered -> they are always the same
reordered_past += (
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past[:2])
+ layer_past[2:],
)
return reordered_past
@add_start_docstrings(
"""
LED model with a sequence classification/head on top (a linear layer on top of the pooled output) e.g. for GLUE
tasks.
""",
LED_START_DOCSTRING,
)
class LEDForSequenceClassification(LEDPreTrainedModel):
_tied_weights_keys = ["decoder.embed_tokens.weight", "encoder.embed_tokens.weight"]
def __init__(self, config: LEDConfig, **kwargs):
warnings.warn(
"The `transformers.LEDForSequenceClassification` class is deprecated and will be removed in version 5 of"
" Transformers. No actual method were provided in the original paper on how to perfom"
" sequence classification.",
FutureWarning,
)
super().__init__(config, **kwargs)
self.led = LEDModel(config)
self.classification_head = LEDClassificationHead(
config.d_model,
config.d_model,
config.num_labels,
config.classifier_dropout,
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(LED_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=Seq2SeqSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
global_attention_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], LEDSeq2SeqSequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
if input_ids is None and inputs_embeds is not None:
raise NotImplementedError(
f"Passing input embeddings is currently not supported for {self.__class__.__name__}"
)
outputs = self.led(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
global_attention_mask=global_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0] # last hidden state
eos_mask = input_ids.eq(self.config.eos_token_id).to(hidden_states.device)
if len(torch.unique_consecutive(eos_mask.sum(1))) > 1:
raise ValueError("All examples must have the same number of <eos> tokens.")
sentence_representation = hidden_states[eos_mask, :].view(hidden_states.size(0), -1, hidden_states.size(-1))[
:, -1, :
]
logits = self.classification_head(sentence_representation)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.config.num_labels == 1:
self.config.problem_type = "regression"
elif self.config.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.config.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return LEDSeq2SeqSequenceClassifierOutput(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
encoder_global_attentions=outputs.encoder_global_attentions,
)
@add_start_docstrings(
"""
LED Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear layer
on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
LED_START_DOCSTRING,
)
class LEDForQuestionAnswering(LEDPreTrainedModel):
_tied_weights_keys = ["decoder.embed_tokens.weight", "encoder.embed_tokens.weight"]
def __init__(self, config):
super().__init__(config)
config.num_labels = 2
self.num_labels = config.num_labels
self.led = LEDModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(LED_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=Seq2SeqQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
global_attention_mask: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], LEDSeq2SeqQuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (*sequence_length*). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (*sequence_length*). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if start_positions is not None and end_positions is not None:
use_cache = False
outputs = self.led(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
global_attention_mask=global_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (
start_logits,
end_logits,
) + outputs[1:]
return ((total_loss,) + output) if total_loss is not None else output
return LEDSeq2SeqQuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
encoder_global_attentions=outputs.encoder_global_attentions,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/led/tokenization_led_fast.py | # coding=utf-8
# Copyright 2021 Iz Beltagy, Matthew E. Peters, Arman Cohan and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for LED."""
import json
from typing import Dict, List, Optional, Tuple, Union
from tokenizers import pre_tokenizers, processors
from ...tokenization_utils_base import AddedToken, BatchEncoding, EncodedInput
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import PaddingStrategy, logging
from .tokenization_led import LEDTokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt", "tokenizer_file": "tokenizer.json"}
class LEDTokenizerFast(PreTrainedTokenizerFast):
r"""
Construct a "fast" LED tokenizer (backed by HuggingFace's *tokenizers* library), derived from the GPT-2 tokenizer,
using byte-level Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import LEDTokenizerFast
>>> tokenizer = LEDTokenizerFast.from_pretrained("allenai/led-base-16384")
>>> tokenizer("Hello world")["input_ids"]
[0, 31414, 232, 2]
>>> tokenizer(" Hello world")["input_ids"]
[0, 20920, 232, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer or when you
call it on some text, but since the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer needs to be instantiated with `add_prefix_space=True`.
</Tip>
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (LED tokenizer detect beginning of words by the preceding space).
trim_offsets (`bool`, *optional*, defaults to `True`):
Whether the post processing step should trim offsets to avoid including whitespaces.
"""
vocab_files_names = VOCAB_FILES_NAMES
slow_tokenizer_class = LEDTokenizer
model_input_names = ["input_ids", "attention_mask"]
# Copied from transformers.models.bart.tokenization_bart_fast.BartTokenizerFast.__init__
def __init__(
self,
vocab_file=None,
merges_file=None,
tokenizer_file=None,
errors="replace",
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
add_prefix_space=False,
trim_offsets=True,
**kwargs,
):
# we have to specify that this tokens is special otherwise adding it will reset the normalized flag to `False` in `add_special_tokens`
mask_token = (
AddedToken(mask_token, lstrip=True, normalized=True, special=True)
if isinstance(mask_token, str)
else mask_token
)
super().__init__(
vocab_file,
merges_file,
tokenizer_file=tokenizer_file,
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
sep_token=sep_token,
cls_token=cls_token,
unk_token=unk_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
trim_offsets=trim_offsets,
**kwargs,
)
pre_tok_state = json.loads(self.backend_tokenizer.pre_tokenizer.__getstate__())
if pre_tok_state.get("add_prefix_space", add_prefix_space) != add_prefix_space:
pre_tok_class = getattr(pre_tokenizers, pre_tok_state.pop("type"))
pre_tok_state["add_prefix_space"] = add_prefix_space
self.backend_tokenizer.pre_tokenizer = pre_tok_class(**pre_tok_state)
self.add_prefix_space = add_prefix_space
# the pre_tokenizer is already updated in the GPT2TokenizerFast `__init__`
tokenizer_component = "post_processor"
tokenizer_component_instance = getattr(self.backend_tokenizer, tokenizer_component, None)
if tokenizer_component_instance:
state = json.loads(tokenizer_component_instance.__getstate__())
# The lists 'sep' and 'cls' must be cased in tuples for the object `post_processor_class`
if "sep" in state:
state["sep"] = tuple(state["sep"])
if "cls" in state:
state["cls"] = tuple(state["cls"])
changes_to_apply = False
if state.get("add_prefix_space", add_prefix_space) != add_prefix_space:
state["add_prefix_space"] = add_prefix_space
changes_to_apply = True
if state.get("trim_offsets", trim_offsets) != trim_offsets:
state["trim_offsets"] = trim_offsets
changes_to_apply = True
if changes_to_apply:
component_class = getattr(processors, state.pop("type"))
new_value = component_class(**state)
setattr(self.backend_tokenizer, tokenizer_component, new_value)
@property
# Copied from transformers.models.bart.tokenization_bart_fast.BartTokenizerFast.mask_token with BART->LED
def mask_token(self) -> str:
"""
`str`: Mask token, to use when training a model with masked-language modeling. Log an error if used while not
having been set.
LED tokenizer has a special mask token to be usable in the fill-mask pipeline. The mask token will greedily
comprise the space before the *<mask>*.
"""
if self._mask_token is None:
if self.verbose:
logger.error("Using mask_token, but it is not set yet.")
return None
return str(self._mask_token)
@mask_token.setter
def mask_token(self, value):
"""
Overriding the default behavior of the mask token to have it eat the space before it.
This is needed to preserve backward compatibility with all the previously used models based on LED.
"""
# Mask token behave like a normal word, i.e. include the space before it
# So we set lstrip to True
value = AddedToken(value, lstrip=True, rstrip=False) if isinstance(value, str) else value
self._mask_token = value
# Copied from transformers.models.bart.tokenization_bart_fast.BartTokenizerFast._batch_encode_plus
def _batch_encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
if is_split_into_words and not self.add_prefix_space:
raise ValueError(
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._batch_encode_plus(*args, **kwargs)
# Copied from transformers.models.bart.tokenization_bart_fast.BartTokenizerFast._encode_plus
def _encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
if is_split_into_words and not self.add_prefix_space:
raise ValueError(
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._encode_plus(*args, **kwargs)
# Copied from transformers.models.bart.tokenization_bart_fast.BartTokenizerFast.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
# Copied from transformers.models.bart.tokenization_bart_fast.BartTokenizerFast.build_inputs_with_special_tokens
def build_inputs_with_special_tokens(self, token_ids_0, token_ids_1=None):
output = [self.bos_token_id] + token_ids_0 + [self.eos_token_id]
if token_ids_1 is None:
return output
return output + [self.eos_token_id] + token_ids_1 + [self.eos_token_id]
# Copied from transformers.models.bart.tokenization_bart_fast.BartTokenizerFast.create_token_type_ids_from_sequences with BART->LED
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. LED does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
# Copied from transformers.models.led.tokenization_led.LEDTokenizer._pad
def _pad(
self,
encoded_inputs: Union[Dict[str, EncodedInput], BatchEncoding],
max_length: Optional[int] = None,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
pad_to_multiple_of: Optional[int] = None,
padding_side: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
) -> dict:
encoded_inputs = super()._pad(
encoded_inputs=encoded_inputs,
max_length=max_length,
padding_strategy=padding_strategy,
pad_to_multiple_of=pad_to_multiple_of,
padding_side=padding_side,
return_attention_mask=return_attention_mask,
)
# Load from model defaults
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
if return_attention_mask and "global_attention_mask" in encoded_inputs:
required_input = encoded_inputs[self.model_input_names[0]]
# `global_attention_mask` need to have the same length as other (sequential) inputs.
needs_to_be_padded = len(encoded_inputs["global_attention_mask"]) != len(required_input)
if needs_to_be_padded:
difference = len(required_input) - len(encoded_inputs["global_attention_mask"])
if self.padding_side == "right":
# Use `-1` since `0` in `global_attention_mask` means `local attention` instead of `not to attend`
encoded_inputs["global_attention_mask"] = (
encoded_inputs["global_attention_mask"] + [-1] * difference
)
elif self.padding_side == "left":
encoded_inputs["global_attention_mask"] = [-1] * difference + encoded_inputs[
"global_attention_mask"
]
else:
raise ValueError("Invalid padding strategy:" + str(self.padding_side))
return encoded_inputs
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/led/configuration_led.py | # coding=utf-8
# Copyright 2021 Iz Beltagy, Matthew E. Peters, Arman Cohan and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""LED model configuration"""
from typing import List, Union
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class LEDConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`LEDModel`]. It is used to instantiate an LED
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the LED
[allenai/led-base-16384](https://huggingface.co/allenai/led-base-16384) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 50265):
Vocabulary size of the LED model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`LEDModel`] or [`TFLEDModel`].
d_model (`int`, *optional*, defaults to 1024):
Dimensionality of the layers and the pooler layer.
encoder_layers (`int`, *optional*, defaults to 12):
Number of encoder layers.
decoder_layers (`int`, *optional*, defaults to 12):
Number of decoder layers.
encoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
decoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer decoder.
decoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
encoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
activation_function (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
activation_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for activations inside the fully connected layer.
classifier_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for classifier.
max_encoder_position_embeddings (`int`, *optional*, defaults to 16384):
The maximum sequence length that the encoder might ever be used with.
max_decoder_position_embeddings (`int`, *optional*, defaults to 16384):
The maximum sequence length that the decoder might ever be used with.
init_std (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
encoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the encoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
decoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the decoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models)
Example:
```python
>>> from transformers import LEDModel, LEDConfig
>>> # Initializing a LED allenai/led-base-16384 style configuration
>>> configuration = LEDConfig()
>>> # Initializing a model from the allenai/led-base-16384 style configuration
>>> model = LEDModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "led"
attribute_map = {
"num_attention_heads": "encoder_attention_heads",
"hidden_size": "d_model",
"attention_probs_dropout_prob": "attention_dropout",
"initializer_range": "init_std",
}
def __init__(
self,
vocab_size=50265,
max_encoder_position_embeddings=16384,
max_decoder_position_embeddings=1024,
encoder_layers=12,
encoder_ffn_dim=4096,
encoder_attention_heads=16,
decoder_layers=12,
decoder_ffn_dim=4096,
decoder_attention_heads=16,
encoder_layerdrop=0.0,
decoder_layerdrop=0.0,
use_cache=True,
is_encoder_decoder=True,
activation_function="gelu",
d_model=1024,
dropout=0.1,
attention_dropout=0.0,
activation_dropout=0.0,
init_std=0.02,
decoder_start_token_id=2,
classifier_dropout=0.0,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
attention_window: Union[List[int], int] = 512,
**kwargs,
):
self.vocab_size = vocab_size
self.max_encoder_position_embeddings = max_encoder_position_embeddings
self.max_decoder_position_embeddings = max_decoder_position_embeddings
self.d_model = d_model
self.encoder_ffn_dim = encoder_ffn_dim
self.encoder_layers = encoder_layers
self.encoder_attention_heads = encoder_attention_heads
self.decoder_ffn_dim = decoder_ffn_dim
self.decoder_layers = decoder_layers
self.decoder_attention_heads = decoder_attention_heads
self.dropout = dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.activation_function = activation_function
self.init_std = init_std
self.encoder_layerdrop = encoder_layerdrop
self.decoder_layerdrop = decoder_layerdrop
self.classifier_dropout = classifier_dropout
self.use_cache = use_cache
self.num_hidden_layers = encoder_layers
self.attention_window = attention_window
super().__init__(
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
is_encoder_decoder=is_encoder_decoder,
decoder_start_token_id=decoder_start_token_id,
**kwargs,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/led/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_led": ["LEDConfig"],
"tokenization_led": ["LEDTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_led_fast"] = ["LEDTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_led"] = [
"LEDForConditionalGeneration",
"LEDForQuestionAnswering",
"LEDForSequenceClassification",
"LEDModel",
"LEDPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_led"] = ["TFLEDForConditionalGeneration", "TFLEDModel", "TFLEDPreTrainedModel"]
if TYPE_CHECKING:
from .configuration_led import LEDConfig
from .tokenization_led import LEDTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_led_fast import LEDTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_led import (
LEDForConditionalGeneration,
LEDForQuestionAnswering,
LEDForSequenceClassification,
LEDModel,
LEDPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_led import TFLEDForConditionalGeneration, TFLEDModel, TFLEDPreTrainedModel
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/led/tokenization_led.py | # coding=utf-8
# Copyright 2021 Iz Beltagy, Matthew E. Peters, Arman Cohan and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for LED."""
import json
import os
from functools import lru_cache
from typing import Dict, List, Optional, Tuple, Union
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...tokenization_utils_base import BatchEncoding, EncodedInput
from ...utils import PaddingStrategy, logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt"}
# See all LED models at https://huggingface.co/models?filter=LED
@lru_cache()
# Copied from transformers.models.bart.tokenization_bart.bytes_to_unicode
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on.
The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab
if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for
decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup
tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs))
# Copied from transformers.models.bart.tokenization_bart.get_pairs
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
class LEDTokenizer(PreTrainedTokenizer):
"""
Constructs a LED tokenizer, which is smilar to the ROBERTa tokenizer, using byte-level Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import LEDTokenizer
>>> tokenizer = LEDTokenizer.from_pretrained("allenai/led-base-16384")
>>> tokenizer("Hello world")["input_ids"]
[0, 31414, 232, 2]
>>> tokenizer(" Hello world")["input_ids"]
[0, 20920, 232, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer or when you
call it on some text, but since the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer will add a space before each word (even the first one).
</Tip>
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (BART tokenizer detect beginning of words by the preceding space).
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.__init__
def __init__(
self,
vocab_file,
merges_file,
errors="replace",
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
add_prefix_space=False,
**kwargs,
):
bos_token = AddedToken(bos_token, lstrip=False, rstrip=False) if isinstance(bos_token, str) else bos_token
eos_token = AddedToken(eos_token, lstrip=False, rstrip=False) if isinstance(eos_token, str) else eos_token
sep_token = AddedToken(sep_token, lstrip=False, rstrip=False) if isinstance(sep_token, str) else sep_token
cls_token = AddedToken(cls_token, lstrip=False, rstrip=False) if isinstance(cls_token, str) else cls_token
unk_token = AddedToken(unk_token, lstrip=False, rstrip=False) if isinstance(unk_token, str) else unk_token
pad_token = AddedToken(pad_token, lstrip=False, rstrip=False) if isinstance(pad_token, str) else pad_token
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
self.errors = errors # how to handle errors in decoding
self.byte_encoder = bytes_to_unicode()
self.byte_decoder = {v: k for k, v in self.byte_encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
bpe_merges = merges_handle.read().split("\n")[1:-1]
bpe_merges = [tuple(merge.split()) for merge in bpe_merges]
self.bpe_ranks = dict(zip(bpe_merges, range(len(bpe_merges))))
self.cache = {}
self.add_prefix_space = add_prefix_space
# Should have added re.IGNORECASE so BPE merges can happen for capitalized versions of contractions
self.pat = re.compile(r"""'s|'t|'re|'ve|'m|'ll|'d| ?\p{L}+| ?\p{N}+| ?[^\s\p{L}\p{N}]+|\s+(?!\S)|\s+""")
super().__init__(
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
**kwargs,
)
@property
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.vocab_size
def vocab_size(self):
return len(self.encoder)
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.get_vocab
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.bpe
def bpe(self, token):
if token in self.cache:
return self.cache[token]
word = tuple(token)
pairs = get_pairs(word)
if not pairs:
return token
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
self.cache[token] = word
return word
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer._tokenize
def _tokenize(self, text):
"""Tokenize a string."""
bpe_tokens = []
for token in re.findall(self.pat, text):
token = "".join(
self.byte_encoder[b] for b in token.encode("utf-8")
) # Maps all our bytes to unicode strings, avoiding control tokens of the BPE (spaces in our case)
bpe_tokens.extend(bpe_token for bpe_token in self.bpe(token).split(" "))
return bpe_tokens
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer._convert_token_to_id
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer._convert_id_to_token
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index)
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.convert_tokens_to_string
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
text = "".join(tokens)
text = bytearray([self.byte_decoder[c] for c in text]).decode("utf-8", errors=self.errors)
return text
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
writer.write("#version: 0.2\n")
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.build_inputs_with_special_tokens with BART->LED
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A LED sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s></s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.get_special_tokens_mask
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1, 1] + ([0] * len(token_ids_1)) + [1]
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.create_token_type_ids_from_sequences with BART->LED
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. LED does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
# Copied from transformers.models.bart.tokenization_bart.BartTokenizer.prepare_for_tokenization
def prepare_for_tokenization(self, text, is_split_into_words=False, **kwargs):
add_prefix_space = kwargs.pop("add_prefix_space", self.add_prefix_space)
if (is_split_into_words or add_prefix_space) and (len(text) > 0 and not text[0].isspace()):
text = " " + text
return (text, kwargs)
def _pad(
self,
encoded_inputs: Union[Dict[str, EncodedInput], BatchEncoding],
max_length: Optional[int] = None,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
pad_to_multiple_of: Optional[int] = None,
padding_side: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
) -> dict:
encoded_inputs = super()._pad(
encoded_inputs=encoded_inputs,
max_length=max_length,
padding_strategy=padding_strategy,
pad_to_multiple_of=pad_to_multiple_of,
padding_side=padding_side,
return_attention_mask=return_attention_mask,
)
# Load from model defaults
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
if return_attention_mask and "global_attention_mask" in encoded_inputs:
required_input = encoded_inputs[self.model_input_names[0]]
# `global_attention_mask` need to have the same length as other (sequential) inputs.
needs_to_be_padded = len(encoded_inputs["global_attention_mask"]) != len(required_input)
if needs_to_be_padded:
difference = len(required_input) - len(encoded_inputs["global_attention_mask"])
if self.padding_side == "right":
# Use `-1` since `0` in `global_attention_mask` means `local attention` instead of `not to attend`
encoded_inputs["global_attention_mask"] = (
encoded_inputs["global_attention_mask"] + [-1] * difference
)
elif self.padding_side == "left":
encoded_inputs["global_attention_mask"] = [-1] * difference + encoded_inputs[
"global_attention_mask"
]
else:
raise ValueError("Invalid padding strategy:" + str(self.padding_side))
return encoded_inputs
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mistral/modeling_tf_mistral.py | # coding=utf-8
# Copyright 2024 Mistral AI and the HuggingFace Inc. team. All rights reserved.
#
# This code is based on EleutherAI's GPT-NeoX library and the GPT-NeoX
# and OPT implementations in this library. It has been modified from its
# original forms to accommodate minor architectural differences compared
# to GPT-NeoX and OPT used by the Meta AI team that trained the model.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TF 2.0 Mistral model."""
import math
import warnings
from typing import List, Optional, Tuple, Union
import tensorflow as tf
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPast,
TFCausalLMOutputWithPast,
TFSequenceClassifierOutputWithPast,
)
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
get_tf_activation,
keras,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
)
from .configuration_mistral import MistralConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "MistralConfig"
def _make_causal_mask(input_ids_shape, dtype, past_key_values_length=0):
"""
Make causal mask used for bi-directional self-attention, supporting both static and dynamic shapes.
"""
bsz, tgt_len = input_ids_shape
# Create a matrix where only the lower triangle and diagonal are filled with zeros (causal mask)
mask = tf.fill((tgt_len, tgt_len), tf.dtypes.as_dtype(dtype).min)
mask_cond = tf.range(tgt_len)
mask = tf.where(mask_cond[:, None] >= mask_cond[None, :], 0.0, mask)
if past_key_values_length > 0:
mask = tf.concat([tf.zeros((tgt_len, past_key_values_length), dtype=dtype), mask], axis=-1)
if bsz is None:
# When batch size is dynamic, expand and tile
# so we can compile a functional model
mask = tf.expand_dims(mask, 0)
mask = tf.expand_dims(mask, 0) # shape: (1, 1, tgt_len, tgt_len + past_key_values_length)
mask = tf.tile(mask, [bsz, 1, 1, 1])
else:
# When batch size is static, directly use broadcast_to
mask = tf.broadcast_to(mask[None, None, :, :], (bsz, 1, tgt_len, tgt_len + past_key_values_length))
return mask
def _expand_mask(mask, dtype, tgt_len=None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = shape_list(mask)
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = tf.expand_dims(tf.expand_dims(mask, 1), 1)
expanded_mask = tf.broadcast_to(expanded_mask, [bsz, 1, tgt_len, src_len])
inverted_mask = 1.0 - tf.cast(expanded_mask, dtype)
return tf.where(
tf.cast(inverted_mask, bool), tf.fill(dims=shape_list(inverted_mask), value=tf.float32.min), inverted_mask
)
class TFMistralRMSNorm(keras.layers.Layer):
def __init__(self, hidden_size, eps=1e-6, **kwargs):
"""
TFMistralRMSNorm is equivalent to T5LayerNorm
"""
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.variance_epsilon = eps
def build(self, input_shape=None):
self.weight = self.add_weight(
name="weight",
shape=self.hidden_size,
initializer="ones",
)
if self.built:
return
self.built = True
def call(self, hidden_states):
input_dtype = hidden_states.dtype
hidden_states = tf.cast(hidden_states, tf.float32)
variance = tf.reduce_mean(tf.square(hidden_states), axis=-1, keepdims=True)
hidden_states = tf.divide(hidden_states, tf.sqrt(variance + self.variance_epsilon))
return self.weight * tf.cast(hidden_states, input_dtype)
# Verification: https://colab.research.google.com/gist/ariG23498/f8d8131b795a131b93d99e70ee93c192/scratchpad.ipynb
class TFMistralRotaryEmbedding(keras.layers.Layer):
def __init__(self, dim, max_position_embeddings=2048, base=10000, **kwargs):
super().__init__(**kwargs)
self.dim = dim
self.max_position_embeddings = max_position_embeddings
self.base = base
self.inv_freq = 1.0 / (self.base ** (tf.range(start=0, limit=self.dim, delta=2, dtype=tf.float32) / self.dim))
def call(self, x, seq_len=None):
# x: [bs, num_attention_heads, seq_len, head_size]
t = tf.cast(tf.range(seq_len, dtype=tf.int64), self.inv_freq.dtype)
freqs = tf.einsum("i,j->ij", t, self.inv_freq)
emb = tf.concat([freqs, freqs], axis=-1)
cos_values = tf.cast(tf.cos(emb), x.dtype)
sin_values = tf.cast(tf.sin(emb), x.dtype)
cos_values = cos_values[:seq_len]
cos_values = tf.cast(cos_values, dtype=x.dtype)
sin_values = sin_values[:seq_len]
sin_values = tf.cast(sin_values, dtype=x.dtype)
return (cos_values, sin_values)
def rotate_half(x):
"""Rotates half the hidden dims of the input."""
mid_length = shape_list(x)[-1] // 2
x1 = x[..., :mid_length]
x2 = x[..., mid_length:]
return tf.concat([-x2, x1], axis=-1)
# Verification: https://colab.research.google.com/gist/ariG23498/bb8474baeb33f4ae6ed7d77da5f7e7a4/scratchpad.ipynb
def apply_rotary_pos_emb(q, k, cos, sin, position_ids, unsqueeze_dim=1):
"""Applies Rotary Position Embedding to the query and key tensors.
Args:
q (`tf.Tensor`): The query tensor.
k (`tf.Tensor`): The key tensor.
cos (`tf.Tensor`): The cosine part of the rotary embedding.
sin (`tf.Tensor`): The sine part of the rotary embedding.
position_ids (`tf.Tensor`):
The position indices of the tokens corresponding to the query and key tensors. For example, this can be
used to pass offsetted position ids when working with a KV-cache.
unsqueeze_dim (`int`, *optional*, defaults to 1):
The 'unsqueeze_dim' argument specifies the dimension along which to unsqueeze cos[position_ids] and
sin[position_ids] so that they can be properly broadcasted to the dimensions of q and k. For example, note
that cos[position_ids] and sin[position_ids] have the shape [batch_size, seq_len, head_dim]. Then, if q and
k have the shape [batch_size, heads, seq_len, head_dim], then setting unsqueeze_dim=1 makes
cos[position_ids] and sin[position_ids] broadcastable to the shapes of q and k. Similarly, if q and k have
the shape [batch_size, seq_len, heads, head_dim], then set unsqueeze_dim=2.
Returns:
`tuple(tf.Tensor)` comprising of the query and key tensors rotated using the Rotary Position Embedding.
"""
cos = tf.expand_dims(tf.gather(cos, position_ids), unsqueeze_dim)
sin = tf.expand_dims(tf.gather(sin, position_ids), unsqueeze_dim)
q_embed = (q * cos) + (rotate_half(q) * sin)
k_embed = (k * cos) + (rotate_half(k) * sin)
return q_embed, k_embed
class TFMistralMLP(keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.hidden_size = config.hidden_size
self.intermediate_size = config.intermediate_size
self.gate_proj = keras.layers.Dense(self.intermediate_size, use_bias=False, name="gate_proj")
self.up_proj = keras.layers.Dense(self.intermediate_size, use_bias=False, name="up_proj")
self.down_proj = keras.layers.Dense(self.hidden_size, use_bias=False, name="down_proj")
self.act_fn = get_tf_activation(config.hidden_act)
def call(self, x):
return self.down_proj(self.act_fn(self.gate_proj(x)) * self.up_proj(x))
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "gate_proj", None) is not None:
with tf.name_scope(self.gate_proj.name):
self.gate_proj.build((self.hidden_size,))
if getattr(self, "up_proj", None) is not None:
with tf.name_scope(self.up_proj.name):
self.up_proj.build((self.hidden_size,))
if getattr(self, "down_proj", None) is not None:
with tf.name_scope(self.down_proj.name):
self.down_proj.build((self.intermediate_size,))
# Verification: https://colab.research.google.com/gist/ariG23498/556d443d491966763ce2e7eee336efed/scratchpad.ipynb
def repeat_kv(hidden_states: tf.Tensor, n_rep: int) -> tf.Tensor:
"""
This is the equivalent of torch.repeat_interleave(x, dim=1, repeats=n_rep). The hidden states go from (batch,
num_key_value_heads, seqlen, head_dim) to (batch, num_attention_heads, seqlen, head_dim)
"""
batch, num_key_value_heads, slen, head_dim = shape_list(hidden_states)
if n_rep == 1:
return hidden_states
hidden_states = tf.expand_dims(hidden_states, 2)
hidden_states = tf.repeat(hidden_states, repeats=n_rep, axis=2)
return tf.reshape(hidden_states, (batch, num_key_value_heads * n_rep, slen, head_dim))
class TFMistralAttention(keras.layers.Layer):
"""
Multi-headed attention from 'Attention Is All You Need' paper. Modified to use sliding window attention: Longformer
and "Generating Long Sequences with Sparse Transformers".
"""
def __init__(self, config: MistralConfig, layer_idx: Optional[int] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.layer_idx = layer_idx
if layer_idx is None:
logger.warning_once(
f"Instantiating {self.__class__.__name__} without passing a `layer_idx` is not recommended and will "
"lead to errors during the forward call if caching is used. Please make sure to provide a `layer_idx` "
"when creating this class."
)
self.hidden_size = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.hidden_size // self.num_heads
self.num_key_value_heads = config.num_key_value_heads
self.num_key_value_groups = self.num_heads // self.num_key_value_heads
self.max_position_embeddings = config.max_position_embeddings
self.rope_theta = config.rope_theta
self.is_causal = True
self.attention_dropout = config.attention_dropout
if (self.head_dim * self.num_heads) != self.hidden_size:
raise ValueError(
f"hidden_size must be divisible by num_heads (got `hidden_size`: {self.hidden_size}"
f" and `num_heads`: {self.num_heads})."
)
self.q_proj = keras.layers.Dense(self.num_heads * self.head_dim, use_bias=False, name="q_proj")
self.k_proj = keras.layers.Dense(self.num_key_value_heads * self.head_dim, use_bias=False, name="k_proj")
self.v_proj = keras.layers.Dense(self.num_key_value_heads * self.head_dim, use_bias=False, name="v_proj")
self.o_proj = keras.layers.Dense(self.hidden_size, use_bias=False, name="o_proj")
self.rotary_emb = TFMistralRotaryEmbedding(
self.head_dim,
max_position_embeddings=self.max_position_embeddings,
base=self.rope_theta,
name="rotary_emb",
)
self.dropout = keras.layers.Dropout(rate=self.attention_dropout)
def _shape(self, tensor: tf.Tensor, seq_len: int, bsz: int):
tensor = tf.reshape(tensor, (bsz, seq_len, self.num_heads, self.head_dim))
tensor = tf.transpose(tensor, perm=(0, 2, 1, 3))
return tensor
def call(
self,
hidden_states: tf.Tensor,
attention_mask: Optional[tf.Tensor] = None,
position_ids: Optional[tf.Tensor] = None,
past_key_value: Optional[Tuple[tf.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = False,
training=None,
**kwargs,
) -> Tuple[tf.Tensor, Optional[tf.Tensor], Optional[Tuple[tf.Tensor]]]:
if "padding_mask" in kwargs:
warnings.warn(
"Passing `padding_mask` is deprecated and will be removed in v4.37. Please make sure use `attention_mask` instead.`"
)
bsz, q_len, _ = shape_list(hidden_states)
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = tf.transpose(
tf.reshape(query_states, (bsz, q_len, self.num_heads, self.head_dim)), perm=(0, 2, 1, 3)
)
key_states = tf.transpose(
tf.reshape(key_states, (bsz, q_len, self.num_key_value_heads, self.head_dim)), perm=(0, 2, 1, 3)
)
value_states = tf.transpose(
tf.reshape(value_states, (bsz, q_len, self.num_key_value_heads, self.head_dim)), perm=(0, 2, 1, 3)
)
kv_seq_len = shape_list(key_states)[-2]
if past_key_value is not None:
kv_seq_len += past_key_value[0].shape[-2]
cos, sin = self.rotary_emb(
x=value_states,
seq_len=kv_seq_len,
)
query_states, key_states = apply_rotary_pos_emb(
q=query_states,
k=key_states,
cos=cos,
sin=sin,
position_ids=position_ids,
)
if past_key_value is not None:
# resue k, v, self_attention
key_states = tf.concat([past_key_value[0], key_states], axis=2)
value_states = tf.concat([past_key_value[1], value_states], axis=2)
past_key_value = (key_states, value_states) if use_cache else None
# repeat k/v heads if n_kv_heads < n_heads
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
attn_weights = tf.matmul(query_states, key_states, transpose_b=True) / math.sqrt(self.head_dim)
if attention_mask is not None:
attn_weights = attn_weights + attention_mask
# upcast attention to fp32
attn_weights = stable_softmax(attn_weights, axis=-1)
attn_weights = tf.cast(attn_weights, query_states.dtype)
attn_weights = self.dropout(
attn_weights,
training=training,
)
attn_output = tf.matmul(attn_weights, value_states)
attn_output = tf.transpose(attn_output, perm=(0, 2, 1, 3))
attn_output = tf.reshape(attn_output, (bsz, q_len, self.hidden_size))
attn_output = self.o_proj(attn_output)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "q_proj", None) is not None:
with tf.name_scope(self.q_proj.name):
self.q_proj.build((self.hidden_size,))
if getattr(self, "k_proj", None) is not None:
with tf.name_scope(self.k_proj.name):
self.k_proj.build((self.hidden_size,))
if getattr(self, "v_proj", None) is not None:
with tf.name_scope(self.v_proj.name):
self.v_proj.build((self.hidden_size,))
if getattr(self, "o_proj", None) is not None:
with tf.name_scope(self.o_proj.name):
self.o_proj.build((self.num_heads * self.head_dim,))
class TFMistralDecoderLayer(keras.layers.Layer):
def __init__(self, config: MistralConfig, layer_idx: int, **kwargs):
super().__init__(**kwargs)
self.hidden_size = config.hidden_size
self.self_attn = TFMistralAttention(config, layer_idx, name="self_attn")
self.mlp = TFMistralMLP(config, name="mlp")
self.input_layernorm = TFMistralRMSNorm(config.hidden_size, eps=config.rms_norm_eps, name="input_layernorm")
self.post_attention_layernorm = TFMistralRMSNorm(
config.hidden_size, eps=config.rms_norm_eps, name="post_attention_layernorm"
)
def call(
self,
hidden_states: tf.Tensor,
attention_mask: Optional[tf.Tensor] = None,
position_ids: Optional[tf.Tensor] = None,
past_key_value: Optional[Tuple[tf.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = False,
**kwargs,
) -> Tuple[tf.Tensor, Optional[Tuple[tf.Tensor, tf.Tensor]]]:
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`tf.Tensor`, *optional*): attention mask of size
`(batch, sequence_length)` where padding elements are indicated by 0.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
past_key_value (`Tuple(tf.Tensor)`, *optional*): cached past key and value projection states
"""
if "padding_mask" in kwargs:
warnings.warn(
"Passing `padding_mask` is deprecated and will be removed in v4.37. Please make sure use `attention_mask` instead.`"
)
residual = hidden_states
hidden_states = self.input_layernorm(hidden_states)
# Self Attention
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.post_attention_layernorm(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights,)
if use_cache:
outputs += (present_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attn", None) is not None:
with tf.name_scope(self.self_attn.name):
self.self_attn.build(None)
if getattr(self, "mlp", None) is not None:
with tf.name_scope(self.mlp.name):
self.mlp.build(None)
if getattr(self, "input_layernorm", None) is not None:
with tf.name_scope(self.input_layernorm.name):
self.input_layernorm.build(None)
if getattr(self, "post_attention_layernorm", None) is not None:
with tf.name_scope(self.post_attention_layernorm.name):
self.post_attention_layernorm.build(None)
@keras_serializable
class TFMistralMainLayer(keras.layers.Layer):
"""
Transformer decoder consisting of *config.num_hidden_layers* layers. Each layer is a [`MistralDecoderLayer`]
Args:
config: MistralConfig
"""
config_class = MistralConfig
def __init__(self, config: MistralConfig, **kwargs):
super().__init__(**kwargs)
self.padding_idx = config.pad_token_id
self.vocab_size = config.vocab_size
self.hidden_size = config.hidden_size
# TF and PT Embedding check: https://colab.research.google.com/gist/ariG23498/2b9826818875c9c4968c79cb19f55f2c/scratchpad.ipynb
self.embed_tokens = keras.layers.Embedding(
input_dim=config.vocab_size,
output_dim=config.hidden_size,
name="embed_tokens",
)
self.layers = [
TFMistralDecoderLayer(config, layer_idx, name=f"layers.{layer_idx}")
for layer_idx in range(config.num_hidden_layers)
]
self._attn_implementation = config._attn_implementation
self.norm = TFMistralRMSNorm(config.hidden_size, eps=config.rms_norm_eps, name="norm")
self.config = config
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
def _prepare_decoder_attention_mask(self, attention_mask, input_shape, inputs_embeds, past_key_values_length):
# create causal mask
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
combined_attention_mask = None
# if input_shape[-1] > 1:
combined_attention_mask = _make_causal_mask(
input_shape,
inputs_embeds.dtype,
past_key_values_length=past_key_values_length,
)
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
expanded_attn_mask = _expand_mask(attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1])
combined_attention_mask = (
expanded_attn_mask if combined_attention_mask is None else expanded_attn_mask + combined_attention_mask
)
return combined_attention_mask
@unpack_inputs
def call(
self,
input_ids: tf.Tensor = None,
attention_mask: Optional[tf.Tensor] = None,
position_ids: Optional[tf.Tensor] = None,
past_key_values: Optional[List[tf.Tensor]] = None,
inputs_embeds: Optional[tf.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TFBaseModelOutputWithPast]:
# retrieve input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
batch_size, seq_length = shape_list(input_ids)
elif inputs_embeds is not None:
batch_size, seq_length, _ = shape_list(inputs_embeds)
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
seq_length_with_past = seq_length
past_key_values_length = 0
if past_key_values is not None:
past_key_values_length = shape_list(past_key_values[0][0])[2]
seq_length_with_past = seq_length_with_past + past_key_values_length
if position_ids is None:
position_ids = tf.range(
start=past_key_values_length, limit=seq_length + past_key_values_length, dtype=tf.int64
)
position_ids = tf.reshape(tf.expand_dims(position_ids, 0), (-1, seq_length))
else:
position_ids = tf.cast(tf.reshape(position_ids, (-1, seq_length)), tf.int64)
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.embed_tokens(input_ids)
if attention_mask is None:
attention_mask = tf.ones((batch_size, seq_length_with_past), dtype=tf.bool)
attention_mask = self._prepare_decoder_attention_mask(
attention_mask, (batch_size, seq_length), inputs_embeds, past_key_values_length
)
hidden_states = inputs_embeds
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
next_decoder_cache = () if use_cache else None
for idx, decoder_layer in enumerate(self.layers):
if output_hidden_states:
all_hidden_states += (hidden_states,)
past_key_value = past_key_values[idx] if past_key_values is not None else None
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[2 if output_attentions else 1],)
if output_attentions:
all_self_attns += (layer_outputs[1],)
hidden_states = self.norm(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if not return_dict:
return tuple(v for v in [hidden_states, next_cache, all_hidden_states, all_self_attns] if v is not None)
return TFBaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embed_tokens", None) is not None:
with tf.name_scope(self.embed_tokens.name):
self.embed_tokens.build(None)
if getattr(self, "norm", None) is not None:
with tf.name_scope(self.norm.name):
self.norm.build(None)
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
MISTRAL_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `model` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`MistralConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
@add_start_docstrings(
"The bare Mistral Model outputting raw hidden-states without any specific head on top.",
MISTRAL_START_DOCSTRING,
)
class TFMistralPreTrainedModel(TFPreTrainedModel):
config_class = MistralConfig
base_model_prefix = "model"
MISTRAL_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
If `past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`.
[What are position IDs?](../glossary#position-ids)
past_key_values (`Cache` or `tuple(tuple(tf.Tensor))`, *optional*):
Pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used to speed up sequential decoding. This typically consists in the `past_key_values`
returned by the model at a previous stage of decoding, when `use_cache=True` or `config.use_cache=True`.
One formats is allowed:
- Tuple of `tuple(tf.Tensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`). This is also known as the legacy
cache format.
The model will output the same cache format that is fed as input. If no `past_key_values` are passed, the
legacy cache format will be returned.
If `past_key_values` are used, the user can optionally input only the last `input_ids` (those that don't
have their past key value states given to this model) of shape `(batch_size, 1)` instead of all `input_ids`
of shape `(batch_size, sequence_length)`.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Mistral Model outputting raw hidden-states without any specific head on top.",
MISTRAL_START_DOCSTRING,
)
class TFMistralModel(TFMistralPreTrainedModel):
def __init__(self, config: MistralConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFMistralMainLayer(config, name="model")
@unpack_inputs
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
def call(
self,
input_ids: tf.Tensor = None,
attention_mask: Optional[tf.Tensor] = None,
position_ids: Optional[tf.Tensor] = None,
past_key_values: Optional[List[tf.Tensor]] = None,
inputs_embeds: Optional[tf.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TFBaseModelOutputWithPast]:
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "model", None) is not None:
with tf.name_scope(self.model.name):
self.model.build(None)
class TFMistralForCausalLM(TFMistralPreTrainedModel, TFCausalLanguageModelingLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFMistralMainLayer(config, name="model")
self.vocab_size = config.vocab_size
self.lm_head = keras.layers.Dense(
config.vocab_size,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="lm_head",
)
self.config = config
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def set_decoder(self, decoder):
self.model = decoder
def get_decoder(self):
return self.model
@unpack_inputs
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def call(
self,
input_ids: tf.Tensor = None,
attention_mask: Optional[tf.Tensor] = None,
position_ids: Optional[tf.Tensor] = None,
past_key_values: Optional[List[tf.Tensor]] = None,
inputs_embeds: Optional[tf.Tensor] = None,
labels: Optional[tf.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TFCausalLMOutputWithPast]:
r"""
Args:
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ..., config.vocab_size]`
or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
"""
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
logits = self.lm_head(hidden_states)
logits = tf.cast(logits, tf.float32)
loss = None
if labels is not None:
# shift labels to the left and cut last logit token
shifted_logits = logits[:, :-1]
labels = labels[:, 1:]
loss = self.hf_compute_loss(labels, shifted_logits)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def prepare_inputs_for_generation(
self, input_ids, past_key_values=None, attention_mask=None, inputs_embeds=None, **kwargs
):
# Omit tokens covered by past_key_values
if past_key_values:
input_ids = tf.expand_dims(input_ids[:, -1], -1)
position_ids = kwargs.get("position_ids", None)
if attention_mask is not None and position_ids is None:
position_ids = tf.math.cumsum(attention_mask, axis=-1, exclusive=True)
if past_key_values:
position_ids = tf.expand_dims(position_ids[:, -1], -1)
return {
"input_ids": input_ids,
"attention_mask": attention_mask,
"position_ids": position_ids,
"past_key_values": past_key_values,
"use_cache": kwargs.get("use_cache"),
}
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "model", None) is not None:
with tf.name_scope(self.model.name):
self.model.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build((self.config.hidden_size,))
@add_start_docstrings(
"""
The Mistral Model transformer with a sequence classification head on top (linear layer).
[`MistralForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT-2) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
MISTRAL_START_DOCSTRING,
)
class TFMistralForSequenceClassification(TFMistralPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.model = TFMistralMainLayer(config, name="model")
self.score = keras.layers.Dense(
self.num_labels,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="score",
)
self.config = config
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
@unpack_inputs
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def call(
self,
input_ids: tf.Tensor = None,
attention_mask: Optional[tf.Tensor] = None,
position_ids: Optional[tf.Tensor] = None,
past_key_values: Optional[List[tf.Tensor]] = None,
inputs_embeds: Optional[tf.Tensor] = None,
labels: Optional[tf.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TFSequenceClassifierOutputWithPast]:
r"""
Args:
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
"""
transformer_outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
logits_shape = shape_list(logits)
in_logits = None
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
sequence_lengths = (
tf.argmax(tf.cast(tf.math.equal(input_ids, self.config.pad_token_id), input_ids.dtype), axis=-1)
- 1
)
sequence_lengths = tf.where(
sequence_lengths >= 0,
sequence_lengths,
tf.cast(shape_list(input_ids[-1]), sequence_lengths.dtype) - 1,
)
in_logits = tf.gather(logits, sequence_lengths, batch_dims=1, axis=1)
else:
sequence_lengths = -1
logger.warning_once(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
loss = None
if labels is not None:
if self.config.pad_token_id is None and logits_shape[0] != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if not tf.is_tensor(sequence_lengths):
in_logits = logits[0 : logits_shape[0], sequence_lengths]
loss = self.hf_compute_loss(tf.reshape(labels, [-1]), tf.reshape(in_logits, [-1, self.num_labels]))
pooled_logits = in_logits if in_logits is not None else logits
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "model", None) is not None:
with tf.name_scope(self.model.name):
self.model.build(None)
if getattr(self, "score", None) is not None:
with tf.name_scope(self.score.name):
self.score.build((self.config.hidden_size,))
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mistral/modeling_flax_mistral.py | # coding=utf-8
# Copyright 2024 Mistral AI and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Flax Mistral model."""
from typing import Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
import numpy as np
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPast,
FlaxCausalLMOutput,
FlaxCausalLMOutputWithCrossAttentions,
)
from ...modeling_flax_utils import ACT2FN, FlaxPreTrainedModel, append_call_sample_docstring, logging
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward
from .configuration_mistral import MistralConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "MistralConfig"
_REAL_CHECKPOINT_FOR_DOC = "mistralai/Mistral-7B-v0.1"
_CHECKPOINT_FOR_DOC = "ksmcg/Mistral-tiny"
MISTRAL_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen
[flax.nn.Module](https://flax.readthedocs.io/en/latest/_autosummary/flax.nn.module.html) subclass. Use it as a
regular Flax Module and refer to the Flax documentation for all matter related to general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`MistralConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16`, or
`jax.numpy.bfloat16`.
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
MISTRAL_INPUTS_DOCSTRING = r"""
Args:
input_ids (`numpy.ndarray` of shape `(batch_size, input_ids_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
If `past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`.
[What are position IDs?](../glossary#position-ids)
past_key_values (`Dict[str, np.ndarray]`, *optional*, returned by `init_cache` or when passing previous `past_key_values`):
Dictionary of pre-computed hidden-states (key and values in the attention blocks) that can be used for fast
auto-regressive decoding. Pre-computed key and value hidden-states are of shape *[batch_size, max_length]*.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.llama.modeling_flax_llama.FlaxLlamaRMSNorm with Llama->Mistral
class FlaxMistralRMSNorm(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.epsilon = self.config.rms_norm_eps
self.weight = self.param("weight", lambda _, shape: jnp.ones(shape), self.config.hidden_size)
def __call__(self, hidden_states):
variance = jnp.asarray(hidden_states, dtype=jnp.float32)
variance = jnp.power(variance, 2)
variance = variance.mean(-1, keepdims=True)
# use `jax.numpy.sqrt` as `jax.lax.rsqrt` does not match `torch.rsqrt`
hidden_states = hidden_states / jnp.sqrt(variance + self.epsilon)
return self.weight * jnp.asarray(hidden_states, dtype=self.dtype)
# Copied from transformers.models.llama.modeling_flax_llama.FlaxLlamaRotaryEmbedding with Llama->Mistral
class FlaxMistralRotaryEmbedding(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
head_dim = self.config.hidden_size // self.config.num_attention_heads
self.sincos = create_sinusoidal_positions(self.config.max_position_embeddings, head_dim)
def __call__(self, key, query, position_ids):
sincos = self.sincos[position_ids]
sin_pos, cos_pos = jnp.split(sincos, 2, axis=-1)
key = apply_rotary_pos_emb(key, sin_pos, cos_pos)
query = apply_rotary_pos_emb(query, sin_pos, cos_pos)
key = jnp.asarray(key, dtype=self.dtype)
query = jnp.asarray(query, dtype=self.dtype)
return key, query
# Copied from transformers.models.llama.modeling_flax_llama.FlaxLlamaMLP with Llama->Mistral
class FlaxMistralMLP(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
embed_dim = self.config.hidden_size
inner_dim = self.config.intermediate_size if self.config.intermediate_size is not None else 4 * embed_dim
kernel_init = jax.nn.initializers.normal(self.config.initializer_range)
self.act = ACT2FN[self.config.hidden_act]
self.gate_proj = nn.Dense(inner_dim, use_bias=False, dtype=self.dtype, kernel_init=kernel_init)
self.down_proj = nn.Dense(embed_dim, use_bias=False, dtype=self.dtype, kernel_init=kernel_init)
self.up_proj = nn.Dense(inner_dim, use_bias=False, dtype=self.dtype, kernel_init=kernel_init)
def __call__(self, hidden_states):
up_proj_states = self.up_proj(hidden_states)
gate_states = self.act(self.gate_proj(hidden_states))
hidden_states = self.down_proj(up_proj_states * gate_states)
return hidden_states
# Copied from transformers.models.llama.modeling_flax_llama.apply_rotary_pos_emb
def apply_rotary_pos_emb(tensor, sin_pos, cos_pos):
return (tensor * cos_pos) + (rotate_half(tensor) * sin_pos)
# Copied from transformers.models.llama.modeling_flax_llama.create_sinusoidal_positions
def create_sinusoidal_positions(num_pos, dim):
inv_freq = 1.0 / (10000 ** (np.arange(0, dim, 2) / dim))
freqs = np.einsum("i , j -> i j", np.arange(num_pos), inv_freq).astype("float32")
emb = np.concatenate((freqs, freqs), axis=-1)
out = np.concatenate((np.sin(emb)[:, None, :], np.cos(emb)[:, None, :]), axis=-1)
return jnp.array(out[:, :, :num_pos])
# Copied from transformers.models.llama.modeling_flax_llama.rotate_half
def rotate_half(tensor):
"""Rotates half the hidden dims of the input."""
rotate_half_tensor = jnp.concatenate(
(-tensor[..., tensor.shape[-1] // 2 :], tensor[..., : tensor.shape[-1] // 2]), axis=-1
)
return rotate_half_tensor
class FlaxMistralAttention(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
config = self.config
self.hidden_size = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.hidden_size // self.num_heads
self.num_key_value_heads = config.num_key_value_heads
self.num_key_value_groups = self.num_heads // self.num_key_value_heads
self.max_position_embeddings = config.max_position_embeddings
self.attention_softmax_in_fp32 = self.dtype is not jnp.float32
self.rope_theta = config.rope_theta
if (self.head_dim * self.num_heads) != self.hidden_size:
raise ValueError(
f"hidden_size must be divisible by num_heads (got `hidden_size`: {self.hidden_size}"
f" and `num_heads`: {self.num_heads})."
)
self.q_proj = nn.Dense(self.num_heads * self.head_dim, use_bias=False, dtype=self.dtype)
self.k_proj = nn.Dense(self.num_key_value_heads * self.head_dim, use_bias=False, dtype=self.dtype)
self.v_proj = nn.Dense(self.num_key_value_heads * self.head_dim, use_bias=False, dtype=self.dtype)
self.o_proj = nn.Dense(self.hidden_size, use_bias=False, dtype=self.dtype)
casual_mask = make_causal_mask(jnp.ones((1, config.max_position_embeddings), dtype="bool"), dtype="bool")
self.causal_mask = jnp.triu(casual_mask, k=-config.sliding_window)
self.rotary_emb = FlaxMistralRotaryEmbedding(config, dtype=self.dtype)
def _split_heads(self, hidden_states, num_heads):
return hidden_states.reshape(hidden_states.shape[:2] + (num_heads, self.head_dim))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.hidden_size,))
@nn.compact
# Copied from transformers.models.gpt_neo.modeling_flax_gpt_neo.FlaxGPTNeoSelfAttention._concatenate_to_cache
def _concatenate_to_cache(self, key, value, query, attention_mask):
"""
This function takes projected key, value states from a single input token and concatenates the states to cached
states from previous steps. This function is slighly adapted from the official Flax repository:
https://github.com/google/flax/blob/491ce18759622506588784b4fca0e4bf05f8c8cd/flax/linen/attention.py#L252
"""
# detect if we're initializing by absence of existing cache data.
is_initialized = self.has_variable("cache", "cached_key")
cached_key = self.variable("cache", "cached_key", jnp.zeros, key.shape, key.dtype)
cached_value = self.variable("cache", "cached_value", jnp.zeros, value.shape, value.dtype)
cache_index = self.variable("cache", "cache_index", lambda: jnp.array(0, dtype=jnp.int32))
if is_initialized:
*batch_dims, max_length, num_heads, depth_per_head = cached_key.value.shape
# update key, value caches with our new 1d spatial slices
cur_index = cache_index.value
indices = (0,) * len(batch_dims) + (cur_index, 0, 0)
key = lax.dynamic_update_slice(cached_key.value, key, indices)
value = lax.dynamic_update_slice(cached_value.value, value, indices)
cached_key.value = key
cached_value.value = value
num_updated_cache_vectors = query.shape[1]
cache_index.value = cache_index.value + num_updated_cache_vectors
# causal mask for cached decoder self-attention: our single query position should only attend to those key positions that have already been generated and cached, not the remaining zero elements.
pad_mask = jnp.broadcast_to(
jnp.arange(max_length) < cur_index + num_updated_cache_vectors,
tuple(batch_dims) + (1, num_updated_cache_vectors, max_length),
)
attention_mask = combine_masks(pad_mask, attention_mask)
return key, value, attention_mask
def __call__(
self,
hidden_states: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
deterministic: bool = True,
output_attentions: bool = False,
init_cache: bool = False,
) -> Tuple[jnp.ndarray, jnp.ndarray]:
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = self._split_heads(query_states, self.num_heads)
key_states = self._split_heads(key_states, self.num_key_value_heads)
value_states = self._split_heads(value_states, self.num_key_value_heads)
key_states, query_states = self.rotary_emb(key_states, query_states, position_ids)
query_length, key_length = query_states.shape[1], key_states.shape[1]
if self.has_variable("cache", "cached_key"):
mask_shift = self.variables["cache"]["cache_index"]
max_decoder_length = self.variables["cache"]["cached_key"].shape[1]
causal_mask = lax.dynamic_slice(
self.causal_mask, (0, 0, mask_shift, 0), (1, 1, query_length, max_decoder_length)
)
else:
causal_mask = self.causal_mask[:, :, :query_length, :key_length]
batch_size = hidden_states.shape[0]
causal_mask = jnp.broadcast_to(causal_mask, (batch_size,) + causal_mask.shape[1:])
attention_mask = jnp.broadcast_to(jnp.expand_dims(attention_mask, axis=(-3, -2)), causal_mask.shape)
attention_mask = combine_masks(attention_mask, causal_mask)
if self.has_variable("cache", "cached_key") or init_cache:
key_states, value_states, attention_mask = self._concatenate_to_cache(
key_states, value_states, query_states, attention_mask
)
key_states = jnp.repeat(key_states, self.num_key_value_groups, axis=2)
value_states = jnp.repeat(value_states, self.num_key_value_groups, axis=2)
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, jnp.finfo(self.dtype).min).astype(self.dtype),
)
# usual dot product attention
attention_dtype = jnp.float32 if self.attention_softmax_in_fp32 else self.dtype
attn_weights = dot_product_attention_weights(
query_states,
key_states,
bias=attention_bias,
deterministic=deterministic,
dropout_rate=self.config.attention_dropout,
dtype=attention_dtype,
)
if self.attention_softmax_in_fp32:
attn_weights = attn_weights.astype(self.dtype)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value_states)
attn_output = self._merge_heads(attn_output)
attn_output = self.o_proj(attn_output)
outputs = (attn_output, attn_weights) if output_attentions else (attn_output,)
return outputs
# Copied from transformers.models.llama.modeling_flax_llama.FlaxLlamaDecoderLayer with Llama->Mistral
class FlaxMistralDecoderLayer(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.input_layernorm = FlaxMistralRMSNorm(self.config, dtype=self.dtype)
self.self_attn = FlaxMistralAttention(self.config, dtype=self.dtype)
self.post_attention_layernorm = FlaxMistralRMSNorm(self.config, dtype=self.dtype)
self.mlp = FlaxMistralMLP(self.config, dtype=self.dtype)
def __call__(
self,
hidden_states,
attention_mask=None,
position_ids=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
):
residual = hidden_states
hidden_states = self.input_layernorm(hidden_states)
outputs = self.self_attn(
hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
)
# residual connection
attn_output = outputs[0]
hidden_states = residual + attn_output
residual = hidden_states
hidden_states = self.post_attention_layernorm(hidden_states)
hidden_states = self.mlp(hidden_states)
# residual connection
hidden_states = residual + hidden_states
return (hidden_states,) + outputs[1:]
# Copied from transformers.models.gpt_neo.modeling_flax_gpt_neo.FlaxGPTNeoPreTrainedModel with GPTNeo->Mistral, GPT_NEO->MISTRAL, transformer->model
class FlaxMistralPreTrainedModel(FlaxPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = MistralConfig
base_model_prefix = "model"
module_class: nn.Module = None
def __init__(
self,
config: MistralConfig,
input_shape: Tuple = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
attention_mask = jnp.ones_like(input_ids)
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_shape)
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(rngs, input_ids, attention_mask, position_ids, return_dict=False)["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
def init_cache(self, batch_size, max_length):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
"""
# init input variables to retrieve cache
input_ids = jnp.ones((batch_size, max_length))
attention_mask = jnp.ones_like(input_ids)
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
init_variables = self.module.init(
jax.random.PRNGKey(0), input_ids, attention_mask, position_ids, return_dict=False, init_cache=True
)
return unfreeze(init_variables["cache"])
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
def __call__(
self,
input_ids,
attention_mask=None,
position_ids=None,
params: dict = None,
past_key_values: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
batch_size, sequence_length = input_ids.shape
if position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `position_ids` when passing `past_key_values`.")
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
if attention_mask is None:
attention_mask = jnp.ones((batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that it can be changed by FlaxMistralAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
outputs = self.module.apply(
inputs,
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
not train,
False,
output_attentions,
output_hidden_states,
return_dict,
rngs=rngs,
mutable=mutable,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past_key_values = outputs
outputs["past_key_values"] = unfreeze(past_key_values["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past_key_values = outputs
outputs = outputs[:1] + (unfreeze(past_key_values["cache"]),) + outputs[1:]
return outputs
# Copied from transformers.models.llama.modeling_flax_llama.FlaxLlamaLayerCollection with Llama->Mistral
class FlaxMistralLayerCollection(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.blocks = [
FlaxMistralDecoderLayer(self.config, dtype=self.dtype, name=str(i))
for i in range(self.config.num_hidden_layers)
]
def __call__(
self,
hidden_states,
attention_mask=None,
position_ids=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = False,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for block in self.blocks:
if output_hidden_states:
all_hidden_states += (hidden_states,)
layer_outputs = block(
hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions += (layer_outputs[1],)
# this contains possible `None` values - `FlaxMistralModule` will filter them out
outputs = (hidden_states, all_hidden_states, all_attentions)
return outputs
# Copied from transformers.models.llama.modeling_flax_llama.FlaxLlamaModule with Llama->Mistral
class FlaxMistralModule(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.hidden_size = self.config.hidden_size
embedding_init = jax.nn.initializers.normal(stddev=self.config.initializer_range)
self.embed_tokens = nn.Embed(
self.config.vocab_size,
self.hidden_size,
embedding_init=embedding_init,
dtype=self.dtype,
)
self.layers = FlaxMistralLayerCollection(self.config, dtype=self.dtype)
self.norm = FlaxMistralRMSNorm(self.config, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask=None,
position_ids=None,
deterministic=True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
input_embeds = self.embed_tokens(input_ids.astype("i4"))
outputs = self.layers(
input_embeds,
position_ids=position_ids,
attention_mask=attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.norm(hidden_states)
if output_hidden_states:
all_hidden_states = outputs[1] + (hidden_states,)
outputs = (hidden_states, all_hidden_states) + outputs[2:]
else:
outputs = (hidden_states,) + outputs[1:]
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=outputs[1],
attentions=outputs[-1],
)
@add_start_docstrings(
"The bare Mistral Model transformer outputting raw hidden-states without any specific head on top.",
MISTRAL_START_DOCSTRING,
)
class FlaxMistralModel(FlaxMistralPreTrainedModel):
module_class = FlaxMistralModule
append_call_sample_docstring(
FlaxMistralModel,
_CHECKPOINT_FOR_DOC,
FlaxBaseModelOutputWithPast,
_CONFIG_FOR_DOC,
real_checkpoint=_REAL_CHECKPOINT_FOR_DOC,
)
# Copied from transformers.models.llama.modeling_flax_llama.FlaxLlamaForCausalLMModule with Llama->Mistral
class FlaxMistralForCausalLMModule(nn.Module):
config: MistralConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.model = FlaxMistralModule(self.config, dtype=self.dtype)
self.lm_head = nn.Dense(
self.config.vocab_size,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
def __call__(
self,
input_ids,
attention_mask=None,
position_ids=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
outputs = self.model(
input_ids,
position_ids=position_ids,
attention_mask=attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
lm_logits = self.lm_head(hidden_states)
if not return_dict:
return (lm_logits,) + outputs[1:]
return FlaxCausalLMOutput(logits=lm_logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions)
@add_start_docstrings(
"""
The Mistral Model transformer with a language modeling head (linear layer) on top.
""",
MISTRAL_START_DOCSTRING,
)
# Copied from transformers.models.gptj.modeling_flax_gptj.FlaxGPTJForCausalLM with GPTJ->Mistral
class FlaxMistralForCausalLM(FlaxMistralPreTrainedModel):
module_class = FlaxMistralForCausalLMModule
def prepare_inputs_for_generation(self, input_ids, max_length, attention_mask: Optional[jax.Array] = None):
# initializing the cache
batch_size, seq_length = input_ids.shape
past_key_values = self.init_cache(batch_size, max_length)
# Note that usually one would have to put 0's in the attention_mask for x > input_ids.shape[-1] and x < cache_length.
# But since Mistral uses a causal mask, those positions are masked anyways.
# Thus we can create a single static attention_mask here, which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if attention_mask is not None:
position_ids = attention_mask.cumsum(axis=-1) - 1
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, attention_mask, (0, 0))
else:
position_ids = jnp.broadcast_to(jnp.arange(seq_length, dtype="i4")[None, :], (batch_size, seq_length))
return {
"past_key_values": past_key_values,
"attention_mask": extended_attention_mask,
"position_ids": position_ids,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
model_kwargs["position_ids"] = model_kwargs["position_ids"][:, -1:] + 1
return model_kwargs
append_call_sample_docstring(
FlaxMistralForCausalLM,
_CHECKPOINT_FOR_DOC,
FlaxCausalLMOutputWithCrossAttentions,
_CONFIG_FOR_DOC,
real_checkpoint=_REAL_CHECKPOINT_FOR_DOC,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mistral/convert_mistral_weights_to_hf.py | # Copyright 2023 Mistral AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import json
import os
import re
import warnings
import torch
from safetensors.torch import load_file
from transformers import LlamaTokenizer, MistralConfig, MistralForCausalLM
try:
from transformers import LlamaTokenizerFast
tokenizer_class = LlamaTokenizerFast
except ImportError as e:
warnings.warn(e)
warnings.warn(
"The converted tokenizer will be the `slow` tokenizer. To use the fast, update your `tokenizers` library and re-run the tokenizer conversion"
)
tokenizer_class = LlamaTokenizer
# fmt: off
STATE_DICT_MAPPING = {
# CausalLM keys
r"^output.weight": r"lm_head.weight",
# Model keys
r"^norm.weight": r"model.norm.weight",
r"^tok_embeddings.weight": r"model.embed_tokens.weight",
# Layers keys
r"^layers.(\d+).attention_norm.weight": r"model.layers.\1.input_layernorm.weight",
r"^layers.(\d+).ffn_norm.weight": r"model.layers.\1.post_attention_layernorm.weight",
# Attention keys
r"^layers.(\d+).attention.w(q|k|v|o).weight": r"model.layers.\1.self_attn.\2_proj.weight",
# MLP keys
r"^layers.(\d+).feed_forward.w1.weight": r"model.layers.\1.mlp.gate_proj.weight",
r"^layers.(\d+).feed_forward.w2.weight": r"model.layers.\1.mlp.down_proj.weight",
r"^layers.(\d+).feed_forward.w3.weight": r"model.layers.\1.mlp.up_proj.weight",
}
# fmt: on
def map_old_key_to_new(old_key):
"""Map of a key of the original state dict to the equivalent key in HF format"""
for pattern, replacement in STATE_DICT_MAPPING.items():
new_key, n_replace = re.subn(pattern, replacement, old_key)
# Early exit of the loop
if n_replace > 0:
return new_key
raise ValueError(f"Key: {old_key} could not be mapped (check the mapping).")
def read_json(path):
with open(path, "r") as f:
return json.load(f)
def permute_for_rope(tensor, n_heads, dim1, dim2):
"""Permute the weights for the ROPE formulation."""
tensor = tensor.view(n_heads, dim1 // n_heads // 2, 2, dim2)
tensor = tensor.transpose(1, 2)
tensor = tensor.reshape(dim1, dim2)
return tensor
def convert_state_dict(original_state_dict: dict, config: MistralConfig):
"""Convert a state dict file, when a single `nn.Module` is never sharded in different files (usual case)."""
new_dict = {}
n_heads = config.num_attention_heads
dim = config.hidden_size
dims_per_head = dim // n_heads
num_key_value_heads = config.num_key_value_heads
key_value_dim = dims_per_head * num_key_value_heads
for old_key, tensor in original_state_dict.items():
new_key = map_old_key_to_new(old_key)
if "q_proj" in new_key:
tensor = tensor.view(n_heads, dims_per_head, dim).reshape(dim, dim)
tensor = permute_for_rope(tensor, n_heads, dim, dim)
elif "k_proj" in new_key:
tensor = tensor.view(num_key_value_heads, dims_per_head, dim).reshape(key_value_dim, dim)
tensor = permute_for_rope(tensor, num_key_value_heads, key_value_dim, dim)
elif "v_proj" in new_key:
tensor = tensor.view(num_key_value_heads, dims_per_head, dim).reshape(key_value_dim, dim)
new_dict[new_key] = tensor
return new_dict
def get_concat_dim(key):
"""Return the dimension to concatenate the weights on."""
concat_dim_1 = [
r"model.embed_tokens.weight",
r"model.layers.(\d+).self_attn.o_proj.weight",
r"model.layers.(\d+).mlp.down_proj.weight",
]
if any(re.search(pattern, key) for pattern in concat_dim_1):
return 1
return 0
def convert_state_dict_sharded(loaded_shards: list[dict], config: MistralConfig):
"""Convert the state dict, when a single `nn.Module` is sharded accross different files."""
new_dict = {}
num_shards = len(loaded_shards)
n_heads = config.num_attention_heads
dim = config.hidden_size
dims_per_head = dim // n_heads
num_key_value_heads = config.num_key_value_heads
n_heads_per_shard = n_heads // num_shards
num_local_key_value_heads = num_key_value_heads // num_shards
key_value_dim = dim if n_heads == num_key_value_heads else dims_per_head * num_local_key_value_heads
original_keys = loaded_shards[0].keys()
for old_key in original_keys:
new_key = map_old_key_to_new(old_key)
cat_dim = get_concat_dim(new_key)
if "q_proj" in new_key:
tensor = torch.cat(
[shard.pop(old_key).view(n_heads_per_shard, dims_per_head, dim) for shard in loaded_shards],
dim=cat_dim,
).reshape(dim, dim)
tensor = permute_for_rope(tensor, n_heads, dim, dim)
elif "k_proj" in new_key:
tensor = torch.cat(
[shard.pop(old_key).view(num_local_key_value_heads, dims_per_head, dim) for shard in loaded_shards],
dim=cat_dim,
).reshape(key_value_dim, dim)
tensor = permute_for_rope(tensor, num_key_value_heads, key_value_dim, dim)
elif "v_proj" in new_key:
tensor = torch.cat(
[shard.pop(old_key).view(num_local_key_value_heads, dims_per_head, dim) for shard in loaded_shards],
dim=cat_dim,
).reshape(key_value_dim, dim)
elif "input_layernorm" in new_key or "post_attention_layernorm" in new_key:
tensor = loaded_shards[0][old_key].clone()
elif "model.norm.weight" in new_key:
tensor = loaded_shards[0][old_key]
else:
tensor = torch.cat([shard.pop(old_key) for shard in loaded_shards], dim=cat_dim)
new_dict[new_key] = tensor
return new_dict
def convert_config(original_config: dict, max_position_embeddings: int):
key_mapping = {
"hidden_size": "dim",
"num_hidden_layers": "n_layers",
"intermediate_size": "hidden_dim",
"num_attention_heads": "n_heads",
"rms_norm_eps": "norm_eps",
}
similar_keys_to_keep = [
"head_dim",
"vocab_size",
]
new_config_kwargs = {k: original_config[v] for k, v in key_mapping.items()}
new_config_kwargs.update({k: v for k, v in original_config.items() if k in similar_keys_to_keep})
# These are not always defined depending on `params.json`
new_config_kwargs["sliding_window"] = original_config.get("sliding_window", None)
new_config_kwargs["num_key_value_heads"] = original_config.get(
"n_kv_heads", new_config_kwargs["num_attention_heads"]
)
new_config_kwargs["rope_theta"] = original_config.get("rope_theta", 10000.0)
# This is never provided in `params.json`, we provide it manually
new_config_kwargs["max_position_embeddings"] = max_position_embeddings
# This may sometimes be a string in `params.json`
if new_config_kwargs["sliding_window"] is not None:
new_config_kwargs["sliding_window"] = int(new_config_kwargs["sliding_window"])
new_config = MistralConfig(**new_config_kwargs)
return new_config
def convert_and_write_model(input_dir: str, output_dir: str, max_position_embeddings: int, modules_are_split: bool):
"""Convert the model and save it (this implicitly save the config as well)."""
params = read_json(os.path.join(input_dir, "params.json"))
config = convert_config(params, max_position_embeddings)
full_state_dict = {}
# The model may be split between different files, but a single nn.Module is always fully present in a single file
if not modules_are_split:
shards = [file for file in os.listdir(input_dir) if file.endswith(".safetensors")]
for shard_file in shards:
original_state_dict = load_file(os.path.join(input_dir, shard_file))
new_dict = convert_state_dict(original_state_dict, config)
full_state_dict.update(new_dict)
# A single nn.Module is split between different checkpoint files
else:
shards = [file for file in os.listdir(input_dir) if re.match(r"consolidated.\d+.pth", file)]
shards = sorted(shards, key=lambda x: int(x.split(".")[1]))
loaded_shards = [torch.load(os.path.join(input_dir, file), map_location="cpu") for file in shards]
full_state_dict = convert_state_dict_sharded(loaded_shards, config)
# Load weights into model and resave them
with torch.device("meta"):
model = MistralForCausalLM(config)
model.load_state_dict(full_state_dict, strict=True, assign=True)
model.save_pretrained(output_dir)
def convert_and_write_tokenizer(input_dir: str, output_dir: str):
"""Convert the tokenizer and save it."""
# May have .v3 or .v7 at the end
tokenizer_file = [file for file in os.listdir(input_dir) if "tokenizer.model" in file][0]
tokenizer = tokenizer_class(os.path.join(input_dir, tokenizer_file))
tokenizer.save_pretrained(output_dir)
def main():
parser = argparse.ArgumentParser()
parser.add_argument(
"input_dir",
help="Location of Mistral weights, which contains tokenizer.model and model folders",
)
parser.add_argument(
"output_dir",
help="Location to write HF model and tokenizer",
)
parser.add_argument(
"--max_position_embeddings",
type=int,
default=32768,
help="`max_position_embeddings` field in the config. This needs to be manually passed (not present anywhere otherwise).",
)
parser.add_argument(
"--modules_are_split",
action="store_true",
help="If passed, then the weights of a single `nn.Module` are assumed to be split between different files.",
)
parser.add_argument(
"--tokenizer_only",
action="store_true",
help="If passed, will only convert the tokenizer.",
)
args = parser.parse_args()
if not args.tokenizer_only:
convert_and_write_model(args.input_dir, args.output_dir, args.max_position_embeddings, args.modules_are_split)
convert_and_write_tokenizer(args.input_dir, args.output_dir)
if __name__ == "__main__":
main()
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mistral/__init__.py | # Copyright 2023 Mistral AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_torch_available,
)
_import_structure = {
"configuration_mistral": ["MistralConfig"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_mistral"] = [
"MistralForCausalLM",
"MistralForQuestionAnswering",
"MistralModel",
"MistralPreTrainedModel",
"MistralForSequenceClassification",
"MistralForTokenClassification",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_mistral"] = [
"FlaxMistralForCausalLM",
"FlaxMistralModel",
"FlaxMistralPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_mistral"] = [
"TFMistralModel",
"TFMistralForCausalLM",
"TFMistralForSequenceClassification",
"TFMistralPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_mistral import MistralConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_mistral import (
MistralForCausalLM,
MistralForQuestionAnswering,
MistralForSequenceClassification,
MistralForTokenClassification,
MistralModel,
MistralPreTrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_mistral import (
FlaxMistralForCausalLM,
FlaxMistralModel,
FlaxMistralPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_mistral import (
TFMistralForCausalLM,
TFMistralForSequenceClassification,
TFMistralModel,
TFMistralPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mistral/modeling_mistral.py | # coding=utf-8
# Copyright 2023 Mistral AI and the HuggingFace Inc. team. All rights reserved.
#
# This code is based on EleutherAI's GPT-NeoX library and the GPT-NeoX
# and OPT implementations in this library. It has been modified from its
# original forms to accommodate minor architectural differences compared
# to GPT-NeoX and OPT used by the Meta AI team that trained the model.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch Mistral model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...cache_utils import Cache, DynamicCache, SlidingWindowCache, StaticCache
from ...generation import GenerationMixin
from ...modeling_attn_mask_utils import AttentionMaskConverter
from ...modeling_outputs import (
BaseModelOutputWithPast,
CausalLMOutputWithPast,
QuestionAnsweringModelOutput,
SequenceClassifierOutputWithPast,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_flash_attn_2_available,
is_flash_attn_greater_or_equal_2_10,
logging,
replace_return_docstrings,
)
from .configuration_mistral import MistralConfig
if is_flash_attn_2_available():
from ...modeling_flash_attention_utils import _flash_attention_forward
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "mistralai/Mistral-7B-v0.1"
_CONFIG_FOR_DOC = "MistralConfig"
# Copied from transformers.models.llama.modeling_llama.LlamaRMSNorm with Llama->Mistral
class MistralRMSNorm(nn.Module):
def __init__(self, hidden_size, eps=1e-6):
"""
MistralRMSNorm is equivalent to T5LayerNorm
"""
super().__init__()
self.weight = nn.Parameter(torch.ones(hidden_size))
self.variance_epsilon = eps
def forward(self, hidden_states):
input_dtype = hidden_states.dtype
hidden_states = hidden_states.to(torch.float32)
variance = hidden_states.pow(2).mean(-1, keepdim=True)
hidden_states = hidden_states * torch.rsqrt(variance + self.variance_epsilon)
return self.weight * hidden_states.to(input_dtype)
def extra_repr(self):
return f"{tuple(self.weight.shape)}, eps={self.variance_epsilon}"
class MistralRotaryEmbedding(nn.Module):
def __init__(self, dim, max_position_embeddings=2048, base=10000, device=None):
super().__init__()
self.dim = dim
self.max_position_embeddings = max_position_embeddings
self.base = base
inv_freq = 1.0 / (self.base ** (torch.arange(0, self.dim, 2, dtype=torch.int64).float().to(device) / self.dim))
self.register_buffer("inv_freq", inv_freq, persistent=False)
@torch.no_grad()
# copied from transformers.models.llama.modeling_llama.LlamaRotaryEmbedding.forward
# TODO(joao): add me back asap :)
def forward(self, x, position_ids):
# x: [bs, num_attention_heads, seq_len, head_size]
inv_freq_expanded = self.inv_freq[None, :, None].float().expand(position_ids.shape[0], -1, 1)
position_ids_expanded = position_ids[:, None, :].float()
# Force float32 since bfloat16 loses precision on long contexts
# See https://github.com/huggingface/transformers/pull/29285
device_type = x.device.type
device_type = device_type if isinstance(device_type, str) and device_type != "mps" else "cpu"
with torch.autocast(device_type=device_type, enabled=False):
freqs = (inv_freq_expanded.float() @ position_ids_expanded.float()).transpose(1, 2)
emb = torch.cat((freqs, freqs), dim=-1)
cos = emb.cos()
sin = emb.sin()
return cos.to(dtype=x.dtype), sin.to(dtype=x.dtype)
# Copied from transformers.models.llama.modeling_llama.rotate_half
def rotate_half(x):
"""Rotates half the hidden dims of the input."""
x1 = x[..., : x.shape[-1] // 2]
x2 = x[..., x.shape[-1] // 2 :]
return torch.cat((-x2, x1), dim=-1)
# Copied from transformers.models.llama.modeling_llama.apply_rotary_pos_emb
def apply_rotary_pos_emb(q, k, cos, sin, position_ids=None, unsqueeze_dim=1):
"""Applies Rotary Position Embedding to the query and key tensors.
Args:
q (`torch.Tensor`): The query tensor.
k (`torch.Tensor`): The key tensor.
cos (`torch.Tensor`): The cosine part of the rotary embedding.
sin (`torch.Tensor`): The sine part of the rotary embedding.
position_ids (`torch.Tensor`, *optional*):
Deprecated and unused.
unsqueeze_dim (`int`, *optional*, defaults to 1):
The 'unsqueeze_dim' argument specifies the dimension along which to unsqueeze cos[position_ids] and
sin[position_ids] so that they can be properly broadcasted to the dimensions of q and k. For example, note
that cos[position_ids] and sin[position_ids] have the shape [batch_size, seq_len, head_dim]. Then, if q and
k have the shape [batch_size, heads, seq_len, head_dim], then setting unsqueeze_dim=1 makes
cos[position_ids] and sin[position_ids] broadcastable to the shapes of q and k. Similarly, if q and k have
the shape [batch_size, seq_len, heads, head_dim], then set unsqueeze_dim=2.
Returns:
`tuple(torch.Tensor)` comprising of the query and key tensors rotated using the Rotary Position Embedding.
"""
cos = cos.unsqueeze(unsqueeze_dim)
sin = sin.unsqueeze(unsqueeze_dim)
q_embed = (q * cos) + (rotate_half(q) * sin)
k_embed = (k * cos) + (rotate_half(k) * sin)
return q_embed, k_embed
class MistralMLP(nn.Module):
def __init__(self, config):
super().__init__()
self.hidden_size = config.hidden_size
self.intermediate_size = config.intermediate_size
self.gate_proj = nn.Linear(self.hidden_size, self.intermediate_size, bias=False)
self.up_proj = nn.Linear(self.hidden_size, self.intermediate_size, bias=False)
self.down_proj = nn.Linear(self.intermediate_size, self.hidden_size, bias=False)
self.act_fn = ACT2FN[config.hidden_act]
def forward(self, hidden_state):
return self.down_proj(self.act_fn(self.gate_proj(hidden_state)) * self.up_proj(hidden_state))
# Copied from transformers.models.llama.modeling_llama.repeat_kv
def repeat_kv(hidden_states: torch.Tensor, n_rep: int) -> torch.Tensor:
"""
This is the equivalent of torch.repeat_interleave(x, dim=1, repeats=n_rep). The hidden states go from (batch,
num_key_value_heads, seqlen, head_dim) to (batch, num_attention_heads, seqlen, head_dim)
"""
batch, num_key_value_heads, slen, head_dim = hidden_states.shape
if n_rep == 1:
return hidden_states
hidden_states = hidden_states[:, :, None, :, :].expand(batch, num_key_value_heads, n_rep, slen, head_dim)
return hidden_states.reshape(batch, num_key_value_heads * n_rep, slen, head_dim)
class MistralAttention(nn.Module):
"""
Multi-headed attention from 'Attention Is All You Need' paper. Modified to use sliding window attention: Longformer
and "Generating Long Sequences with Sparse Transformers".
"""
def __init__(self, config: MistralConfig, layer_idx: Optional[int] = None):
super().__init__()
self.config = config
self.layer_idx = layer_idx
if layer_idx is None:
logger.warning_once(
f"Instantiating {self.__class__.__name__} without passing a `layer_idx` is not recommended and will "
"lead to errors during the forward call if caching is used. Please make sure to provide a `layer_idx` "
"when creating this class."
)
self.attention_dropout = config.attention_dropout
self.hidden_size = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = config.head_dim
self.num_key_value_heads = config.num_key_value_heads
self.num_key_value_groups = self.num_heads // self.num_key_value_heads
self.max_position_embeddings = config.max_position_embeddings
self.rope_theta = config.rope_theta
self.is_causal = True
self.q_proj = nn.Linear(self.hidden_size, self.num_heads * self.head_dim, bias=False)
self.k_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=False)
self.v_proj = nn.Linear(self.hidden_size, self.num_key_value_heads * self.head_dim, bias=False)
self.o_proj = nn.Linear(self.num_heads * self.head_dim, self.hidden_size, bias=False)
self.rotary_emb = MistralRotaryEmbedding(
self.head_dim,
max_position_embeddings=self.max_position_embeddings,
base=self.rope_theta,
)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
cos, sin = self.rotary_emb(value_states, position_ids)
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
# sin and cos are specific to RoPE models; cache_position needed for the static cache
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position}
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
attn_weights = torch.matmul(query_states, key_states.transpose(2, 3)) / math.sqrt(self.head_dim)
if attention_mask is not None: # no matter the length, we just slice it
causal_mask = attention_mask[:, :, :, : key_states.shape[-2]]
attn_weights = attn_weights + causal_mask
# upcast attention to fp32
attn_weights = nn.functional.softmax(attn_weights, dim=-1, dtype=torch.float32).to(query_states.dtype)
attn_weights = nn.functional.dropout(attn_weights, p=self.attention_dropout, training=self.training)
attn_output = torch.matmul(attn_weights, value_states)
if attn_output.size() != (bsz, self.num_heads, q_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz, self.num_heads, q_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.view(bsz, q_len, -1)
attn_output = self.o_proj(attn_output)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
class MistralFlashAttention2(MistralAttention):
"""
Mistral flash attention module. This module inherits from `MistralAttention` as the weights of the module stays
untouched. The only required change would be on the forward pass where it needs to correctly call the public API of
flash attention and deal with padding tokens in case the input contains any of them.
"""
# Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2.__init__
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
# TODO: Should be removed once Flash Attention for RoCm is bumped to 2.1.
# flash_attn<2.1 generates top-left aligned causal mask, while what is needed here is bottom-right alignement, that was made default for flash_attn>=2.1. This attribute is used to handle this difference. Reference: https://github.com/Dao-AILab/flash-attention/releases/tag/v2.1.0.
# Beware that with flash_attn<2.1, using q_seqlen != k_seqlen (except for the case q_seqlen == 1) produces a wrong mask (top-left).
self._flash_attn_uses_top_left_mask = not is_flash_attn_greater_or_equal_2_10()
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
):
if isinstance(past_key_value, StaticCache):
raise ValueError(
"`static` cache implementation is not compatible with `attn_implementation==flash_attention_2` "
"make sure to use `sdpa` in the mean time, and open an issue at https://github.com/huggingface/transformers"
)
output_attentions = False
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
kv_seq_len = key_states.shape[-2]
if past_key_value is not None:
kv_seq_len += cache_position[0]
cos, sin = self.rotary_emb(value_states, position_ids)
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
cache_kwargs = {"sin": sin, "cos": cos} # Specific to RoPE models
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
# repeat k/v heads if n_kv_heads < n_heads
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
dropout_rate = 0.0 if not self.training else self.attention_dropout
# In PEFT, usually we cast the layer norms in float32 for training stability reasons
# therefore the input hidden states gets silently casted in float32. Hence, we need
# cast them back in float16 just to be sure everything works as expected.
input_dtype = query_states.dtype
if input_dtype == torch.float32:
if torch.is_autocast_enabled():
target_dtype = torch.get_autocast_gpu_dtype()
# Handle the case where the model is quantized
elif hasattr(self.config, "_pre_quantization_dtype"):
target_dtype = self.config._pre_quantization_dtype
else:
target_dtype = self.q_proj.weight.dtype
logger.warning_once(
f"The input hidden states seems to be silently casted in float32, this might be related to"
f" the fact you have upcasted embedding or layer norm layers in float32. We will cast back the input in"
f" {target_dtype}."
)
query_states = query_states.to(target_dtype)
key_states = key_states.to(target_dtype)
value_states = value_states.to(target_dtype)
# Reashape to the expected shape for Flash Attention
query_states = query_states.transpose(1, 2)
key_states = key_states.transpose(1, 2)
value_states = value_states.transpose(1, 2)
attn_output = _flash_attention_forward(
query_states,
key_states,
value_states,
attention_mask,
q_len,
position_ids=position_ids,
dropout=dropout_rate,
sliding_window=getattr(self.config, "sliding_window", None),
use_top_left_mask=self._flash_attn_uses_top_left_mask,
is_causal=self.is_causal,
)
attn_output = attn_output.reshape(bsz, q_len, self.num_heads * self.head_dim).contiguous()
attn_output = self.o_proj(attn_output)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
# copied from transformers.models.llama.modeling_llama.LlamaSdpaAttention with Llama->Mistral
# TODO(joao): add me back asap :)
class MistralSdpaAttention(MistralAttention):
"""
Mistral attention module using torch.nn.functional.scaled_dot_product_attention. This module inherits from
`MistralAttention` as the weights of the module stays untouched. The only changes are on the forward pass to adapt to
SDPA API.
"""
# Adapted from MistralAttention.forward
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
cache_position: Optional[torch.LongTensor] = None,
**kwargs,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
if output_attentions:
# TODO: Improve this warning with e.g. `model.config.attn_implementation = "manual"` once this is implemented.
logger.warning_once(
"MistralModel is using MistralSdpaAttention, but `torch.nn.functional.scaled_dot_product_attention` does not support `output_attentions=True`. Falling back to the manual attention implementation, "
'but specifying the manual implementation will be required from Transformers version v5.0.0 onwards. This warning can be removed using the argument `attn_implementation="eager"` when loading the model.'
)
return super().forward(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
cache_position=cache_position,
)
bsz, q_len, _ = hidden_states.size()
query_states = self.q_proj(hidden_states)
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = query_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
key_states = key_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
value_states = value_states.view(bsz, q_len, -1, self.head_dim).transpose(1, 2)
cos, sin = self.rotary_emb(value_states, position_ids)
query_states, key_states = apply_rotary_pos_emb(query_states, key_states, cos, sin)
if past_key_value is not None:
# sin and cos are specific to RoPE models; cache_position needed for the static cache
cache_kwargs = {"sin": sin, "cos": cos, "cache_position": cache_position}
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
key_states = repeat_kv(key_states, self.num_key_value_groups)
value_states = repeat_kv(value_states, self.num_key_value_groups)
causal_mask = attention_mask
if attention_mask is not None:
causal_mask = causal_mask[:, :, :, : key_states.shape[-2]]
# SDPA with memory-efficient backend is currently (torch==2.1.2) bugged with non-contiguous inputs with custom attn_mask,
# Reference: https://github.com/pytorch/pytorch/issues/112577.
if query_states.device.type == "cuda" and causal_mask is not None:
query_states = query_states.contiguous()
key_states = key_states.contiguous()
value_states = value_states.contiguous()
# We dispatch to SDPA's Flash Attention or Efficient kernels via this `is_causal` if statement instead of an inline conditional assignment
# in SDPA to support both torch.compile's dynamic shapes and full graph options. An inline conditional prevents dynamic shapes from compiling.
is_causal = True if causal_mask is None and q_len > 1 else False
attn_output = torch.nn.functional.scaled_dot_product_attention(
query_states,
key_states,
value_states,
attn_mask=causal_mask,
dropout_p=self.attention_dropout if self.training else 0.0,
is_causal=is_causal,
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.view(bsz, q_len, -1)
attn_output = self.o_proj(attn_output)
return attn_output, None, past_key_value
MISTRAL_ATTENTION_CLASSES = {
"eager": MistralAttention,
"flash_attention_2": MistralFlashAttention2,
"sdpa": MistralSdpaAttention,
}
# copied from transformers.models.llama.modeling_llama.LlamaDecoderLayer with Llama->Mistral, LLAMA->MISTRAL
# TODO(joao): add me back asap :)
class MistralDecoderLayer(nn.Module):
def __init__(self, config: MistralConfig, layer_idx: int):
super().__init__()
self.hidden_size = config.hidden_size
self.self_attn = MISTRAL_ATTENTION_CLASSES[config._attn_implementation](config=config, layer_idx=layer_idx)
self.mlp = MistralMLP(config)
self.input_layernorm = MistralRMSNorm(config.hidden_size, eps=config.rms_norm_eps)
self.post_attention_layernorm = MistralRMSNorm(config.hidden_size, eps=config.rms_norm_eps)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = False,
cache_position: Optional[torch.LongTensor] = None,
**kwargs,
) -> Tuple[torch.FloatTensor, Optional[Tuple[torch.FloatTensor, torch.FloatTensor]]]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`, *optional*):
attention mask of size `(batch_size, sequence_length)` if flash attention is used or `(batch_size, 1,
query_sequence_length, key_sequence_length)` if default attention is used.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
past_key_value (`Tuple(torch.FloatTensor)`, *optional*): cached past key and value projection states
cache_position (`torch.LongTensor` of shape `(sequence_length)`, *optional*):
Indices depicting the position of the input sequence tokens in the sequence
kwargs (`dict`, *optional*):
Arbitrary kwargs to be ignored, used for FSDP and other methods that injects code
into the model
"""
residual = hidden_states
hidden_states = self.input_layernorm(hidden_states)
# Self Attention
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
cache_position=cache_position,
**kwargs,
)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.post_attention_layernorm(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights,)
if use_cache:
outputs += (present_key_value,)
return outputs
MISTRAL_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`MistralConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
@add_start_docstrings(
"The bare Mistral Model outputting raw hidden-states without any specific head on top.",
MISTRAL_START_DOCSTRING,
)
class MistralPreTrainedModel(PreTrainedModel):
config_class = MistralConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
_no_split_modules = ["MistralDecoderLayer"]
_skip_keys_device_placement = "past_key_values"
_supports_flash_attn_2 = True
_supports_sdpa = True
_supports_cache_class = True
_supports_static_cache = True
def _init_weights(self, module):
std = self.config.initializer_range
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
MISTRAL_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
If `past_key_values` is used, optionally only the last `input_ids` have to be input (see
`past_key_values`).
If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`.
[What are position IDs?](../glossary#position-ids)
past_key_values (`Cache` or `tuple(tuple(torch.FloatTensor))`, *optional*):
Pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used to speed up sequential decoding. This typically consists in the `past_key_values`
returned by the model at a previous stage of decoding, when `use_cache=True` or `config.use_cache=True`.
Two formats are allowed:
- a [`~cache_utils.Cache`] instance, see our
[kv cache guide](https://huggingface.co/docs/transformers/en/kv_cache);
- Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`). This is also known as the legacy
cache format.
The model will output the same cache format that is fed as input. If no `past_key_values` are passed, the
legacy cache format will be returned.
If `past_key_values` are used, the user can optionally input only the last `input_ids` (those that don't
have their past key value states given to this model) of shape `(batch_size, 1)` instead of all `input_ids`
of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
cache_position (`torch.LongTensor` of shape `(sequence_length)`, *optional*):
Indices indicating the position of the input sequence tokens in the sequence. Unlike `position_ids`,
this tensor is not affected by padding. It is used to update the cache in the correct position and to infer
the complete sequence length.
"""
@add_start_docstrings(
"The bare Mistral Model outputting raw hidden-states without any specific head on top.",
MISTRAL_START_DOCSTRING,
)
class MistralModel(MistralPreTrainedModel):
"""
Transformer decoder consisting of *config.num_hidden_layers* layers. Each layer is a [`MistralDecoderLayer`]
Args:
config: MistralConfig
"""
def __init__(self, config: MistralConfig):
super().__init__(config)
self.padding_idx = config.pad_token_id
self.vocab_size = config.vocab_size
self.embed_tokens = nn.Embedding(config.vocab_size, config.hidden_size, self.padding_idx)
self.layers = nn.ModuleList(
[MistralDecoderLayer(config, layer_idx) for layer_idx in range(config.num_hidden_layers)]
)
self._attn_implementation = config._attn_implementation
self.norm = MistralRMSNorm(config.hidden_size, eps=config.rms_norm_eps)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Union[Cache, List[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
) -> Union[Tuple, BaseModelOutputWithPast]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# retrieve input_ids and inputs_embeds
if (input_ids is None) ^ (inputs_embeds is not None):
raise ValueError("You must specify exactly one of input_ids or inputs_embeds")
if self.gradient_checkpointing and self.training and use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids)
# kept for BC (non `Cache` `past_key_values` inputs)
return_legacy_cache = False
if use_cache and not isinstance(past_key_values, Cache):
return_legacy_cache = True
if past_key_values is None:
past_key_values = DynamicCache()
else:
past_key_values = DynamicCache.from_legacy_cache(past_key_values)
logger.warning_once(
"We detected that you are passing `past_key_values` as a tuple of tuples. This is deprecated and "
"will be removed in v4.47. Please convert your cache or use an appropriate `Cache` class "
"(https://huggingface.co/docs/transformers/kv_cache#legacy-cache-format)"
)
if cache_position is None:
past_seen_tokens = past_key_values.get_seq_length() if past_key_values is not None else 0
cache_position = torch.arange(
past_seen_tokens, past_seen_tokens + inputs_embeds.shape[1], device=inputs_embeds.device
)
if position_ids is None:
position_ids = cache_position.unsqueeze(0)
causal_mask = self._update_causal_mask(
attention_mask, inputs_embeds, cache_position, past_key_values, use_cache, output_attentions
)
hidden_states = inputs_embeds
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
next_decoder_cache = None
for decoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
causal_mask,
position_ids,
past_key_values,
output_attentions,
use_cache,
cache_position,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=causal_mask,
position_ids=position_ids,
past_key_value=past_key_values,
output_attentions=output_attentions,
use_cache=use_cache,
cache_position=cache_position,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache = layer_outputs[2 if output_attentions else 1]
if output_attentions:
all_self_attns += (layer_outputs[1],)
hidden_states = self.norm(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if return_legacy_cache:
next_cache = next_cache.to_legacy_cache()
if not return_dict:
return tuple(v for v in [hidden_states, next_cache, all_hidden_states, all_self_attns] if v is not None)
return BaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
)
def _update_causal_mask(
self,
attention_mask: torch.Tensor,
input_tensor: torch.Tensor,
cache_position: torch.Tensor,
past_key_values: Cache,
use_cache: bool,
output_attentions: bool,
):
if self.config._attn_implementation == "flash_attention_2":
if attention_mask is not None and use_cache:
is_padding_right = attention_mask[:, -1].sum().item() != input_tensor.size()[0]
if is_padding_right:
raise ValueError(
"You are attempting to perform batched generation with padding_side='right'"
" this may lead to unexpected behaviour for Flash Attention version of Mistral. Make sure to "
" call `tokenizer.padding_side = 'left'` before tokenizing the input. "
)
if attention_mask is not None and 0.0 in attention_mask:
return attention_mask
return None
# For SDPA, when possible, we will rely on its `is_causal` argument instead of its `attn_mask` argument, in
# order to dispatch on Flash Attention 2. This feature is not compatible with static cache, as SDPA will fail
# to infer the attention mask.
past_seen_tokens = past_key_values.get_seq_length() if past_key_values is not None else 0
using_static_cache = isinstance(past_key_values, StaticCache)
using_sliding_window_cache = isinstance(past_key_values, SlidingWindowCache)
# When output attentions is True, sdpa implementation's forward method calls the eager implementation's forward
if (
self.config._attn_implementation == "sdpa"
and not (using_static_cache or using_sliding_window_cache)
and not output_attentions
):
if AttentionMaskConverter._ignore_causal_mask_sdpa(
attention_mask,
inputs_embeds=input_tensor,
past_key_values_length=past_seen_tokens,
sliding_window=self.config.sliding_window,
is_training=self.training,
):
return None
dtype, device = input_tensor.dtype, input_tensor.device
min_dtype = torch.finfo(dtype).min
sequence_length = input_tensor.shape[1]
# SlidingWindowCache or StaticCache
if using_sliding_window_cache or using_static_cache:
target_length = past_key_values.get_max_cache_shape()
# DynamicCache or no cache
else:
target_length = (
attention_mask.shape[-1]
if isinstance(attention_mask, torch.Tensor)
else past_seen_tokens + sequence_length + 1
)
# In case the provided `attention` mask is 2D, we generate a causal mask here (4D).
causal_mask = self._prepare_4d_causal_attention_mask_with_cache_position(
attention_mask,
sequence_length=sequence_length,
target_length=target_length,
dtype=dtype,
device=device,
cache_position=cache_position,
batch_size=input_tensor.shape[0],
config=self.config,
past_key_values=past_key_values,
)
if (
self.config._attn_implementation == "sdpa"
and attention_mask is not None
and attention_mask.device.type == "cuda"
and not output_attentions
):
# Attend to all tokens in fully masked rows in the causal_mask, for example the relevant first rows when
# using left padding. This is required by F.scaled_dot_product_attention memory-efficient attention path.
# Details: https://github.com/pytorch/pytorch/issues/110213
causal_mask = AttentionMaskConverter._unmask_unattended(causal_mask, min_dtype)
return causal_mask
@staticmethod
def _prepare_4d_causal_attention_mask_with_cache_position(
attention_mask: torch.Tensor,
sequence_length: int,
target_length: int,
dtype: torch.dtype,
device: torch.device,
cache_position: torch.Tensor,
batch_size: int,
config: MistralConfig,
past_key_values: Cache,
):
"""
Creates a causal 4D mask of shape `(batch_size, 1, query_length, key_value_length)` from a 2D mask of shape
`(batch_size, key_value_length)`, or if the input `attention_mask` is already 4D, do nothing.
Args:
attention_mask (`torch.Tensor`):
A 2D attention mask of shape `(batch_size, key_value_length)` or a 4D attention mask of shape `(batch_size, 1, query_length, key_value_length)`.
sequence_length (`int`):
The sequence length being processed.
target_length (`int`):
The target length: when generating with static cache, the mask should be as long as the static cache, to account for the 0 padding, the part of the cache that is not filled yet.
dtype (`torch.dtype`):
The dtype to use for the 4D attention mask.
device (`torch.device`):
The device to plcae the 4D attention mask on.
cache_position (`torch.Tensor`):
Indices depicting the position of the input sequence tokens in the sequence.
batch_size (`torch.Tensor`):
Batch size.
config (`MistralConfig`):
The model's configuration class
past_key_values (`Cache`):
The cache class that is being used currently to generate
"""
if attention_mask is not None and attention_mask.dim() == 4:
# In this case we assume that the mask comes already in inverted form and requires no inversion or slicing.
causal_mask = attention_mask
else:
min_dtype = torch.finfo(dtype).min
causal_mask = torch.full(
(sequence_length, target_length), fill_value=min_dtype, dtype=dtype, device=device
)
diagonal_attend_mask = torch.arange(target_length, device=device) > cache_position.reshape(-1, 1)
if config.sliding_window is not None:
# if we have sliding window, we should not attend to tokens beyond sliding window length, so we mask them out also
# the check is needed to verify is current checkpoint was trained with sliding window or not
if not isinstance(past_key_values, SlidingWindowCache) or sequence_length > target_length:
sliding_attend_mask = torch.arange(target_length, device=device) <= (
cache_position.reshape(-1, 1) - config.sliding_window
)
diagonal_attend_mask.bitwise_or_(sliding_attend_mask)
causal_mask *= diagonal_attend_mask
causal_mask = causal_mask[None, None, :, :].expand(batch_size, 1, -1, -1)
if attention_mask is not None:
causal_mask = causal_mask.clone() # copy to contiguous memory for in-place edit
if attention_mask.shape[-1] > target_length:
attention_mask = attention_mask[:, :target_length]
mask_length = attention_mask.shape[-1]
padding_mask = causal_mask[:, :, :, :mask_length] + attention_mask[:, None, None, :]
padding_mask = padding_mask == 0
causal_mask[:, :, :, :mask_length] = causal_mask[:, :, :, :mask_length].masked_fill(
padding_mask, min_dtype
)
return causal_mask
class MistralForCausalLM(MistralPreTrainedModel, GenerationMixin):
_tied_weights_keys = ["lm_head.weight"]
_tp_plan = {"lm_head": "colwise_rep"}
def __init__(self, config):
super().__init__(config)
self.model = MistralModel(config)
self.vocab_size = config.vocab_size
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def set_decoder(self, decoder):
self.model = decoder
def get_decoder(self):
return self.model
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Union[Cache, List[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
cache_position: Optional[torch.LongTensor] = None,
num_logits_to_keep: int = 0,
) -> Union[Tuple, CausalLMOutputWithPast]:
r"""
Args:
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
num_logits_to_keep (`int`, *optional*):
Calculate logits for the last `num_logits_to_keep` tokens. If `0`, calculate logits for all
`input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, MistralForCausalLM
>>> model = MistralForCausalLM.from_pretrained("mistralai/Mistral-7B-v0.1")
>>> tokenizer = AutoTokenizer.from_pretrained("mistralai/Mistral-7B-v0.1")
>>> prompt = "Hey, are you conscious? Can you talk to me?"
>>> inputs = tokenizer(prompt, return_tensors="pt")
>>> # Generate
>>> generate_ids = model.generate(inputs.input_ids, max_length=30)
>>> tokenizer.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
"Hey, are you conscious? Can you talk to me?\nI'm not conscious, but I can talk to you."
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
cache_position=cache_position,
)
hidden_states = outputs[0]
# Only compute necessary logits, and do not upcast them to float if we are not computing the loss
logits = self.lm_head(hidden_states[:, -num_logits_to_keep:, :])
loss = None
if labels is not None:
# Upcast to float if we need to compute the loss to avoid potential precision issues
logits = logits.float()
# Shift so that tokens < n predict n
shift_logits = logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
shift_logits = shift_logits.view(-1, self.config.vocab_size)
shift_labels = shift_labels.view(-1)
# Ensure tensors are on the same device
shift_labels = shift_labels.to(shift_logits.device)
loss_fct = CrossEntropyLoss()
loss = loss_fct(shift_logits, shift_labels)
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return CausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
The Mistral Model transformer with a sequence classification head on top (linear layer).
[`MistralForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT-2) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
MISTRAL_START_DOCSTRING,
)
# Copied from transformers.models.llama.modeling_llama.LlamaForSequenceClassification with Llama->Mistral, LLAMA->MISTRAL
class MistralForSequenceClassification(MistralPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.model = MistralModel(config)
self.score = nn.Linear(config.hidden_size, self.num_labels, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Union[Cache, List[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutputWithPast]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size = input_ids.shape[0]
else:
batch_size = inputs_embeds.shape[0]
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
pooled_logits = logits[torch.arange(batch_size, device=logits.device), sequence_lengths]
loss = None
if labels is not None:
loss = self.loss_function(logits=logits, labels=labels, pooled_logits=pooled_logits, config=self.config)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
The Mistral Model transformer with a token classification head on top (a linear layer on top of the hidden-states
output) e.g. for Named-Entity-Recognition (NER) tasks.
""",
MISTRAL_START_DOCSTRING,
)
# Copied from transformers.models.llama.modeling_llama.LlamaForTokenClassification with Llama->Mistral, LLAMA->MISTRAL
class MistralForTokenClassification(MistralPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.model = MistralModel(config)
if getattr(config, "classifier_dropout", None) is not None:
classifier_dropout = config.classifier_dropout
elif getattr(config, "hidden_dropout", None) is not None:
classifier_dropout = config.hidden_dropout
else:
classifier_dropout = 0.1
self.dropout = nn.Dropout(classifier_dropout)
self.score = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.score(sequence_output)
loss = None
if labels is not None:
loss = self.loss_function(logits, labels, self.config)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
The Mistral Model transformer with a span classification head on top for extractive question-answering tasks like
SQuAD (a linear layer on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
MISTRAL_START_DOCSTRING,
)
# Copied from transformers.models.llama.modeling_llama.LlamaForQuestionAnswering with Llama->Mistral,LLAMA->MISTRAL,transformer->model
class MistralForQuestionAnswering(MistralPreTrainedModel):
base_model_prefix = "model"
# Copied from models.models.bloom.modeling_bloom.BloomForQuestionAnswering.__init__ with Bloom->Mistral
def __init__(self, config):
super().__init__(config)
self.model = MistralModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, 2)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
@add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Union[Cache, List[torch.FloatTensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**kwargs,
) -> Union[Tuple, QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
loss = None
if start_positions is not None and end_positions is not None:
loss = self.loss_function(start_logits, end_logits, start_positions, end_positions, **kwargs)
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return QuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mistral/configuration_mistral.py | # coding=utf-8
# Copyright 2023 Mistral AI and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Mistral model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class MistralConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`MistralModel`]. It is used to instantiate an
Mistral model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the Mistral-7B-v0.1 or Mistral-7B-Instruct-v0.1.
[mistralai/Mistral-7B-v0.1](https://huggingface.co/mistralai/Mistral-7B-v0.1)
[mistralai/Mistral-7B-Instruct-v0.1](https://huggingface.co/mistralai/Mistral-7B-Instruct-v0.1)
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 32000):
Vocabulary size of the Mistral model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`MistralModel`]
hidden_size (`int`, *optional*, defaults to 4096):
Dimension of the hidden representations.
intermediate_size (`int`, *optional*, defaults to 14336):
Dimension of the MLP representations.
num_hidden_layers (`int`, *optional*, defaults to 32):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 32):
Number of attention heads for each attention layer in the Transformer encoder.
num_key_value_heads (`int`, *optional*, defaults to 8):
This is the number of key_value heads that should be used to implement Grouped Query Attention. If
`num_key_value_heads=num_attention_heads`, the model will use Multi Head Attention (MHA), if
`num_key_value_heads=1` the model will use Multi Query Attention (MQA) otherwise GQA is used. When
converting a multi-head checkpoint to a GQA checkpoint, each group key and value head should be constructed
by meanpooling all the original heads within that group. For more details checkout [this
paper](https://arxiv.org/pdf/2305.13245.pdf). If it is not specified, will default to `8`.
head_dim (`int`, *optional*, defaults to `hidden_size // num_attention_heads`):
The attention head dimension.
hidden_act (`str` or `function`, *optional*, defaults to `"silu"`):
The non-linear activation function (function or string) in the decoder.
max_position_embeddings (`int`, *optional*, defaults to `4096*32`):
The maximum sequence length that this model might ever be used with. Mistral's sliding window attention
allows sequence of up to 4096*32 tokens.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
rms_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the rms normalization layers.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
pad_token_id (`int`, *optional*):
The id of the padding token.
bos_token_id (`int`, *optional*, defaults to 1):
The id of the "beginning-of-sequence" token.
eos_token_id (`int`, *optional*, defaults to 2):
The id of the "end-of-sequence" token.
tie_word_embeddings (`bool`, *optional*, defaults to `False`):
Whether the model's input and output word embeddings should be tied.
rope_theta (`float`, *optional*, defaults to 10000.0):
The base period of the RoPE embeddings.
sliding_window (`int`, *optional*, defaults to 4096):
Sliding window attention window size. If not specified, will default to `4096`.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
```python
>>> from transformers import MistralModel, MistralConfig
>>> # Initializing a Mistral 7B style configuration
>>> configuration = MistralConfig()
>>> # Initializing a model from the Mistral 7B style configuration
>>> model = MistralModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "mistral"
keys_to_ignore_at_inference = ["past_key_values"]
# Default tensor parallel plan for base model `MistralModel`
base_model_tp_plan = {
"layers.*.self_attn.q_proj": "colwise",
"layers.*.self_attn.k_proj": "colwise",
"layers.*.self_attn.v_proj": "colwise",
"layers.*.self_attn.o_proj": "rowwise",
"layers.*.mlp.gate_proj": "colwise",
"layers.*.mlp.up_proj": "colwise",
"layers.*.mlp.down_proj": "rowwise",
}
def __init__(
self,
vocab_size=32000,
hidden_size=4096,
intermediate_size=14336,
num_hidden_layers=32,
num_attention_heads=32,
num_key_value_heads=8,
head_dim=None,
hidden_act="silu",
max_position_embeddings=4096 * 32,
initializer_range=0.02,
rms_norm_eps=1e-6,
use_cache=True,
pad_token_id=None,
bos_token_id=1,
eos_token_id=2,
tie_word_embeddings=False,
rope_theta=10000.0,
sliding_window=4096,
attention_dropout=0.0,
**kwargs,
):
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.hidden_size = hidden_size
self.intermediate_size = intermediate_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.sliding_window = sliding_window
self.head_dim = head_dim or hidden_size // num_attention_heads
# for backward compatibility
if num_key_value_heads is None:
num_key_value_heads = num_attention_heads
self.num_key_value_heads = num_key_value_heads
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.rms_norm_eps = rms_norm_eps
self.use_cache = use_cache
self.rope_theta = rope_theta
self.attention_dropout = attention_dropout
super().__init__(
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
tie_word_embeddings=tie_word_embeddings,
**kwargs,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/tokenization_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for ESM."""
import os
from typing import List, Optional
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt"}
def load_vocab_file(vocab_file):
with open(vocab_file, "r") as f:
lines = f.read().splitlines()
return [l.strip() for l in lines]
class EsmTokenizer(PreTrainedTokenizer):
"""
Constructs an ESM tokenizer.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
unk_token="<unk>",
cls_token="<cls>",
pad_token="<pad>",
mask_token="<mask>",
eos_token="<eos>",
**kwargs,
):
self.all_tokens = load_vocab_file(vocab_file)
self._id_to_token = dict(enumerate(self.all_tokens))
self._token_to_id = {tok: ind for ind, tok in enumerate(self.all_tokens)}
super().__init__(
unk_token=unk_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
eos_token=eos_token,
**kwargs,
)
# TODO, all the tokens are added? But they are also part of the vocab... bit strange.
# none of them are special, but they all need special splitting.
self.unique_no_split_tokens = self.all_tokens
self._update_trie(self.unique_no_split_tokens)
def _convert_id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def _convert_token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def _tokenize(self, text, **kwargs):
return text.split()
def get_vocab(self):
base_vocab = self._token_to_id.copy()
base_vocab.update(self.added_tokens_encoder)
return base_vocab
def token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
cls = [self.cls_token_id]
sep = [self.eos_token_id] # No sep token in ESM vocabulary
if token_ids_1 is None:
if self.eos_token_id is None:
return cls + token_ids_0
else:
return cls + token_ids_0 + sep
elif self.eos_token_id is None:
raise ValueError("Cannot tokenize multiple sequences when EOS token is not set!")
return cls + token_ids_0 + sep + token_ids_1 + sep # Multiple inputs always have an EOS token
def get_special_tokens_mask(
self, token_ids_0: List, token_ids_1: Optional[List] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieves sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` or `encode_plus` methods.
Args:
token_ids_0 (`List[int]`):
List of ids of the first sequence.
token_ids_1 (`List[int]`, *optional*):
List of ids of the second sequence.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
if token_ids_1 is not None:
raise ValueError(
"You should not supply a second sequence if the provided sequence of "
"ids is already formatted with special tokens for the model."
)
return [1 if token in self.all_special_ids else 0 for token in token_ids_0]
mask = [1] + ([0] * len(token_ids_0)) + [1]
if token_ids_1 is not None:
mask += [0] * len(token_ids_1) + [1]
return mask
def save_vocabulary(self, save_directory, filename_prefix):
vocab_file = os.path.join(save_directory, (filename_prefix + "-" if filename_prefix else "") + "vocab.txt")
with open(vocab_file, "w") as f:
f.write("\n".join(self.all_tokens))
return (vocab_file,)
@property
def vocab_size(self) -> int:
return len(self.all_tokens)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/configuration_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""ESM model configuration"""
from dataclasses import asdict, dataclass
from typing import Optional
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
# TODO Update this
class EsmConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ESMModel`]. It is used to instantiate a ESM model
according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the ESM
[facebook/esm-1b](https://huggingface.co/facebook/esm-1b) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*):
Vocabulary size of the ESM model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`ESMModel`].
mask_token_id (`int`, *optional*):
The index of the mask token in the vocabulary. This must be included in the config because of the
"mask-dropout" scaling trick, which will scale the inputs depending on the number of masked tokens.
pad_token_id (`int`, *optional*):
The index of the padding token in the vocabulary. This must be included in the config because certain parts
of the ESM code use this instead of the attention mask.
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 1026):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query", "rotary"`.
For positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
emb_layer_norm_before (`bool`, *optional*):
Whether to apply layer normalization after embeddings but before the main stem of the network.
token_dropout (`bool`, defaults to `False`):
When this is enabled, masked tokens are treated as if they had been dropped out by input dropout.
Examples:
```python
>>> from transformers import EsmModel, EsmConfig
>>> # Initializing a ESM facebook/esm-1b style configuration
>>> configuration = EsmConfig(vocab_size=33)
>>> # Initializing a model from the configuration
>>> model = EsmModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "esm"
def __init__(
self,
vocab_size=None,
mask_token_id=None,
pad_token_id=None,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=1026,
initializer_range=0.02,
layer_norm_eps=1e-12,
position_embedding_type="absolute",
use_cache=True,
emb_layer_norm_before=None,
token_dropout=False,
is_folding_model=False,
esmfold_config=None,
vocab_list=None,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, mask_token_id=mask_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.emb_layer_norm_before = emb_layer_norm_before
self.token_dropout = token_dropout
self.is_folding_model = is_folding_model
if is_folding_model:
if esmfold_config is None:
logger.info("No esmfold_config supplied for folding model, using default values.")
esmfold_config = EsmFoldConfig()
elif isinstance(esmfold_config, dict):
esmfold_config = EsmFoldConfig(**esmfold_config)
self.esmfold_config = esmfold_config
if vocab_list is None:
logger.warning("No vocab_list supplied for folding model, assuming the ESM-2 vocabulary!")
self.vocab_list = get_default_vocab_list()
else:
self.vocab_list = vocab_list
else:
self.esmfold_config = None
self.vocab_list = None
if self.esmfold_config is not None and getattr(self.esmfold_config, "use_esm_attn_map", False):
raise ValueError("The HuggingFace port of ESMFold does not support use_esm_attn_map at this time!")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = super().to_dict()
if isinstance(self.esmfold_config, EsmFoldConfig):
output["esmfold_config"] = self.esmfold_config.to_dict()
return output
@dataclass
class EsmFoldConfig:
esm_type: str = None
fp16_esm: bool = True
use_esm_attn_map: bool = False
esm_ablate_pairwise: bool = False
esm_ablate_sequence: bool = False
esm_input_dropout: float = 0
embed_aa: bool = True
bypass_lm: bool = False
lddt_head_hid_dim: int = 128
trunk: "TrunkConfig" = None
def __post_init__(self):
if self.trunk is None:
self.trunk = TrunkConfig()
elif isinstance(self.trunk, dict):
self.trunk = TrunkConfig(**self.trunk)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["trunk"] = self.trunk.to_dict()
return output
@dataclass
class TrunkConfig:
num_blocks: int = 48
sequence_state_dim: int = 1024
pairwise_state_dim: int = 128
sequence_head_width: int = 32
pairwise_head_width: int = 32
position_bins: int = 32
dropout: float = 0
layer_drop: float = 0
cpu_grad_checkpoint: bool = False
max_recycles: int = 4
chunk_size: Optional[int] = 128
structure_module: "StructureModuleConfig" = None
def __post_init__(self):
if self.structure_module is None:
self.structure_module = StructureModuleConfig()
elif isinstance(self.structure_module, dict):
self.structure_module = StructureModuleConfig(**self.structure_module)
if self.max_recycles <= 0:
raise ValueError(f"`max_recycles` should be positive, got {self.max_recycles}.")
if self.sequence_state_dim % self.sequence_state_dim != 0:
raise ValueError(
"`sequence_state_dim` should be a round multiple of `sequence_state_dim`, got"
f" {self.sequence_state_dim} and {self.sequence_state_dim}."
)
if self.pairwise_state_dim % self.pairwise_state_dim != 0:
raise ValueError(
"`pairwise_state_dim` should be a round multiple of `pairwise_state_dim`, got"
f" {self.pairwise_state_dim} and {self.pairwise_state_dim}."
)
sequence_num_heads = self.sequence_state_dim // self.sequence_head_width
pairwise_num_heads = self.pairwise_state_dim // self.pairwise_head_width
if self.sequence_state_dim != sequence_num_heads * self.sequence_head_width:
raise ValueError(
"`sequence_state_dim` should be equal to `sequence_num_heads * sequence_head_width, got"
f" {self.sequence_state_dim} != {sequence_num_heads} * {self.sequence_head_width}."
)
if self.pairwise_state_dim != pairwise_num_heads * self.pairwise_head_width:
raise ValueError(
"`pairwise_state_dim` should be equal to `pairwise_num_heads * pairwise_head_width, got"
f" {self.pairwise_state_dim} != {pairwise_num_heads} * {self.pairwise_head_width}."
)
if self.pairwise_state_dim % 2 != 0:
raise ValueError(f"`pairwise_state_dim` should be even, got {self.pairwise_state_dim}.")
if self.dropout >= 0.4:
raise ValueError(f"`dropout` should not be greater than 0.4, got {self.dropout}.")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["structure_module"] = self.structure_module.to_dict()
return output
@dataclass
class StructureModuleConfig:
"""
Args:
sequence_dim:
Single representation channel dimension
pairwise_dim:
Pair representation channel dimension
ipa_dim:
IPA hidden channel dimension
resnet_dim:
Angle resnet (Alg. 23 lines 11-14) hidden channel dimension
num_heads_ipa:
Number of IPA heads
num_qk_points:
Number of query/key points to generate during IPA
num_v_points:
Number of value points to generate during IPA
dropout_rate:
Dropout rate used throughout the layer
num_blocks:
Number of structure module blocks
num_transition_layers:
Number of layers in the single representation transition (Alg. 23 lines 8-9)
num_resnet_blocks:
Number of blocks in the angle resnet
num_angles:
Number of angles to generate in the angle resnet
trans_scale_factor:
Scale of single representation transition hidden dimension
epsilon:
Small number used in angle resnet normalization
inf:
Large number used for attention masking
"""
sequence_dim: int = 384
pairwise_dim: int = 128
ipa_dim: int = 16
resnet_dim: int = 128
num_heads_ipa: int = 12
num_qk_points: int = 4
num_v_points: int = 8
dropout_rate: float = 0.1
num_blocks: int = 8
num_transition_layers: int = 1
num_resnet_blocks: int = 2
num_angles: int = 7
trans_scale_factor: int = 10
epsilon: float = 1e-8
inf: float = 1e5
def to_dict(self):
return asdict(self)
def get_default_vocab_list():
return (
"<cls>",
"<pad>",
"<eos>",
"<unk>",
"L",
"A",
"G",
"V",
"S",
"E",
"R",
"T",
"I",
"D",
"P",
"K",
"Q",
"N",
"F",
"Y",
"M",
"H",
"W",
"C",
"X",
"B",
"U",
"Z",
"O",
".",
"-",
"<null_1>",
"<mask>",
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/modeling_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch ESM model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
def rotate_half(x):
x1, x2 = x.chunk(2, dim=-1)
return torch.cat((-x2, x1), dim=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : x.shape[-2], :]
sin = sin[:, :, : x.shape[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def gelu(x):
"""
This is the gelu implementation from the original ESM repo. Using F.gelu yields subtly wrong results.
"""
return x * 0.5 * (1.0 + torch.erf(x / math.sqrt(2.0)))
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + x.transpose(-1, -2)
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = x.sum(-1, keepdims=True)
a2 = x.sum(-2, keepdims=True)
a12 = x.sum((-1, -2), keepdims=True)
avg = a1 * a2
avg.div_(a12) # in-place to reduce memory
normalized = x - avg
return normalized
class RotaryEmbedding(torch.nn.Module):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int):
super().__init__()
# Generate and save the inverse frequency buffer (non trainable)
inv_freq = 1.0 / (10000 ** (torch.arange(0, dim, 2, dtype=torch.int64).float() / dim))
inv_freq = inv_freq
self.register_buffer("inv_freq", inv_freq)
self._seq_len_cached = None
self._cos_cached = None
self._sin_cached = None
def _update_cos_sin_tables(self, x, seq_dimension=2):
seq_len = x.shape[seq_dimension]
# Reset the tables if the sequence length has changed,
# or if we're on a new device (possibly due to tracing for instance)
if seq_len != self._seq_len_cached or self._cos_cached.device != x.device:
self._seq_len_cached = seq_len
t = torch.arange(x.shape[seq_dimension], device=x.device).type_as(self.inv_freq)
freqs = torch.outer(t, self.inv_freq)
emb = torch.cat((freqs, freqs), dim=-1).to(x.device)
self._cos_cached = emb.cos()[None, None, :, :]
self._sin_cached = emb.sin()[None, None, :, :]
return self._cos_cached, self._sin_cached
def forward(self, q: torch.Tensor, k: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
self._cos_cached, self._sin_cached = self._update_cos_sin_tables(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, self._cos_cached, self._sin_cached),
apply_rotary_pos_emb(k, self._cos_cached, self._sin_cached),
)
class EsmContactPredictionHead(nn.Module):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
):
super().__init__()
self.in_features = in_features
self.eos_idx = eos_idx
self.regression = nn.Linear(in_features, 1, bias)
self.activation = nn.Sigmoid()
def forward(self, tokens, attentions):
# remove eos token attentions
eos_mask = tokens.ne(self.eos_idx).to(attentions)
eos_mask = eos_mask.unsqueeze(1) * eos_mask.unsqueeze(2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = attentions.size()
attentions = attentions.view(batch_size, layers * heads, seqlen, seqlen)
# features: batch x channels x tokens x tokens (symmetric)
attentions = attentions.to(
self.regression.weight.device
) # attentions always float32, may need to convert to float16
attentions = average_product_correct(symmetrize(attentions))
attentions = attentions.permute(0, 2, 3, 1)
return self.activation(self.regression(attentions).squeeze(3))
class EsmEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
if config.emb_layer_norm_before:
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
else:
self.layer_norm = None
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
def forward(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings = embeddings.masked_fill((input_ids == self.mask_token_id).unsqueeze(-1), 0.0)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = attention_mask.sum(-1)
mask_ratio_observed = (input_ids == self.mask_token_id).sum(-1).float() / src_lengths
embeddings = (embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]).to(
embeddings.dtype
)
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings = embeddings + position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = (embeddings * attention_mask.unsqueeze(-1)).to(embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class EsmSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = RotaryEmbedding(dim=self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = hidden_states.size()[1]
position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs.to(value_layer.dtype), value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class EsmSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
class EsmAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = EsmSelfAttention(config)
self.output = EsmSelfOutput(config)
self.pruned_heads = set()
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class EsmIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = gelu(hidden_states)
return hidden_states
class EsmOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
class EsmLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = EsmAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = EsmAttention(config)
self.intermediate = EsmIntermediate(config)
self.output = EsmOutput(config)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = self.feed_forward_chunk(attention_output)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
attention_output_ln = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(attention_output_ln)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class EsmEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([EsmLayer(config) for _ in range(config.num_hidden_layers)])
self.emb_layer_norm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with `config.gradient_checkpointing=True`. Setting "
"`use_cache=False`..."
)
use_cache = False
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache = next_decoder_cache + (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler
class EsmPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class EsmPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
supports_gradient_checkpointing = True
_no_split_modules = ["EsmLayer", "EsmFoldTriangularSelfAttentionBlock", "EsmEmbeddings"]
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel._init_weights
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
ESM_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class EsmModel(EsmPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = EsmEmbeddings(config)
self.encoder = EsmEncoder(config)
self.pooler = EsmPooler(config) if add_pooling_layer else None
self.contact_head = EsmContactPredictionHead(
in_features=config.num_hidden_layers * config.num_attention_heads, bias=True
)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = torch.stack(attns, dim=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(3)
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(4)
return self.contact_head(tokens, attns)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class EsmForMaskedLM(EsmPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.weight"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = EsmModel(config, add_pooling_layer=False)
self.lm_head = EsmLMHead(config)
self.init_weights()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, *optional*, defaults to `{}`):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(prediction_scores.device)
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask=attention_mask)
class EsmLMHead(nn.Module):
"""ESM Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForSequenceClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = EsmModel(config, add_pooling_layer=False)
self.classifier = EsmClassificationHead(config)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForTokenClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = EsmModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(logits.device)
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class EsmClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = torch.tanh(x)
x = self.dropout(x)
x = self.out_proj(x)
return x
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/convert_esm.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert ESM checkpoint."""
import argparse
import pathlib
from pathlib import Path
from tempfile import TemporaryDirectory
import esm as esm_module
import torch
from esm.esmfold.v1.misc import batch_encode_sequences as esmfold_encode_sequences
from esm.esmfold.v1.pretrained import esmfold_v1
from transformers.models.esm.configuration_esm import EsmConfig, EsmFoldConfig
from transformers.models.esm.modeling_esm import (
EsmForMaskedLM,
EsmForSequenceClassification,
EsmIntermediate,
EsmLayer,
EsmOutput,
EsmSelfAttention,
EsmSelfOutput,
)
from transformers.models.esm.modeling_esmfold import EsmForProteinFolding
from transformers.models.esm.tokenization_esm import EsmTokenizer
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
SAMPLE_DATA = [
(
"protein1",
"MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA",
),
("protein2", "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLA"),
("protein3", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLAGG"),
("protein4", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLA"),
]
MODEL_MAPPING = {
"esm1b_t33_650M_UR50S": esm_module.pretrained.esm1b_t33_650M_UR50S,
"esm1v_t33_650M_UR90S_1": esm_module.pretrained.esm1v_t33_650M_UR90S_1,
"esm1v_t33_650M_UR90S_2": esm_module.pretrained.esm1v_t33_650M_UR90S_2,
"esm1v_t33_650M_UR90S_3": esm_module.pretrained.esm1v_t33_650M_UR90S_3,
"esm1v_t33_650M_UR90S_4": esm_module.pretrained.esm1v_t33_650M_UR90S_4,
"esm1v_t33_650M_UR90S_5": esm_module.pretrained.esm1v_t33_650M_UR90S_5,
"esm2_t48_15B_UR50D": esm_module.pretrained.esm2_t48_15B_UR50D,
"esm2_t36_3B_UR50D": esm_module.pretrained.esm2_t36_3B_UR50D,
"esm2_t33_650M_UR50D": esm_module.pretrained.esm2_t33_650M_UR50D,
"esm2_t30_150M_UR50D": esm_module.pretrained.esm2_t30_150M_UR50D,
"esm2_t12_35M_UR50D": esm_module.pretrained.esm2_t12_35M_UR50D,
"esm2_t6_8M_UR50D": esm_module.pretrained.esm2_t6_8M_UR50D,
"esmfold_v1": esmfold_v1,
}
restypes = list("ARNDCQEGHILKMFPSTWYV")
restypes_with_x = restypes + ["X"]
restypes_with_extras = restypes_with_x + ["<pad>", "<mask>", "<cls>", "<sep>", "<eos>"]
def get_esmfold_tokenizer():
with TemporaryDirectory() as tempdir:
vocab = "\n".join(restypes_with_extras)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokenizer.pad_token_id = 0 # Overlaps with 'A' but that seems to be what they want
return hf_tokenizer
def transfer_and_check_weights(original_module, our_module):
status = our_module.load_state_dict(original_module.state_dict())
if status.missing_keys:
raise ValueError(f"Missing keys: {status.missing_keys}")
if status.unexpected_keys:
raise ValueError(f"Unexpected keys: {status.unexpected_keys}")
def convert_esm_checkpoint_to_pytorch(
model: str, pytorch_dump_folder_path: str, classification_head: bool, push_to_repo: str, auth_token: str
):
"""
Copy/paste/tweak esm's weights to our BERT structure.
"""
if model.startswith("esmfold"):
esm = MODEL_MAPPING[model]()
else:
esm, alphabet = MODEL_MAPPING[model]()
esm.eval() # disable dropout
if model.startswith("esmfold"):
embed_dim = esm.esm.embed_dim
num_layers = esm.esm.num_layers
num_attention_heads = esm.esm.attention_heads
intermediate_size = 4 * embed_dim
token_dropout = esm.esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = True
esmfold_config = EsmFoldConfig()
for key, val in esm.cfg.items():
if hasattr(esmfold_config, key) and key != "trunk":
setattr(esmfold_config, key, val)
for key, val in esm.cfg.trunk.items():
if hasattr(esmfold_config.trunk, key) and key != "structure_module":
setattr(esmfold_config.trunk, key, val)
for key, val in esm.cfg.trunk.structure_module.items():
if hasattr(esmfold_config.trunk.structure_module, key):
setattr(esmfold_config.trunk.structure_module, key, val)
elif hasattr(esm, "args"):
# Indicates an ESM-1b or ESM-1v model
embed_dim = esm.args.embed_dim
num_layers = esm.args.layers
num_attention_heads = esm.args.attention_heads
intermediate_size = esm.args.ffn_embed_dim
token_dropout = esm.args.token_dropout
emb_layer_norm_before = True if esm.emb_layer_norm_before else False
position_embedding_type = "absolute"
is_folding_model = False
esmfold_config = None
else:
# Indicates an ESM-2 model
embed_dim = esm.embed_dim
num_layers = esm.num_layers
num_attention_heads = esm.attention_heads
intermediate_size = 4 * embed_dim # This is hardcoded in ESM-2
token_dropout = esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = False
esmfold_config = None
if is_folding_model:
alphabet = esm.esm.alphabet
vocab_list = tuple(alphabet.all_toks)
mask_token_id = alphabet.mask_idx
pad_token_id = alphabet.padding_idx
if is_folding_model:
original_esm_model = esm.esm
else:
original_esm_model = esm
config = EsmConfig(
vocab_size=original_esm_model.embed_tokens.num_embeddings,
mask_token_id=mask_token_id,
hidden_size=embed_dim,
num_hidden_layers=num_layers,
num_attention_heads=num_attention_heads,
intermediate_size=intermediate_size,
max_position_embeddings=1026,
layer_norm_eps=1e-5, # PyTorch default used in fairseq
attention_probs_dropout_prob=0.0,
hidden_dropout_prob=0.0,
pad_token_id=pad_token_id,
emb_layer_norm_before=emb_layer_norm_before,
token_dropout=token_dropout,
position_embedding_type=position_embedding_type,
is_folding_model=is_folding_model,
esmfold_config=esmfold_config,
vocab_list=vocab_list,
)
if classification_head:
config.num_labels = esm.classification_heads["mnli"].out_proj.weight.shape[0]
print("Our ESM config:", config)
if model.startswith("esmfold"):
model_class = EsmForProteinFolding
elif classification_head:
model_class = EsmForSequenceClassification
else:
model_class = EsmForMaskedLM
model = model_class(config)
model.eval()
# Now let's copy all the weights.
# Embeddings
model.esm.embeddings.word_embeddings.weight = original_esm_model.embed_tokens.weight
if position_embedding_type == "absolute":
model.esm.embeddings.position_embeddings.weight = original_esm_model.embed_positions.weight
if config.emb_layer_norm_before:
model.esm.embeddings.layer_norm.weight = original_esm_model.emb_layer_norm_before.weight
model.esm.embeddings.layer_norm.bias = original_esm_model.emb_layer_norm_before.bias
model.esm.encoder.emb_layer_norm_after.weight = original_esm_model.emb_layer_norm_after.weight
model.esm.encoder.emb_layer_norm_after.bias = original_esm_model.emb_layer_norm_after.bias
for i in range(config.num_hidden_layers):
# Encoder: start of layer
layer: EsmLayer = model.esm.encoder.layer[i]
# esm_layer: TransformerSentenceEncoderLayer = original_esm_model.layers[i]
esm_layer = original_esm_model.layers[i]
# self attention
self_attn: EsmSelfAttention = layer.attention.self
assert (
esm_layer.self_attn.k_proj.weight.data.shape
== esm_layer.self_attn.q_proj.weight.data.shape
== esm_layer.self_attn.v_proj.weight.data.shape
== torch.Size((config.hidden_size, config.hidden_size))
)
self_attn.query.weight.data = esm_layer.self_attn.q_proj.weight
self_attn.query.bias.data = esm_layer.self_attn.q_proj.bias
self_attn.key.weight.data = esm_layer.self_attn.k_proj.weight
self_attn.key.bias.data = esm_layer.self_attn.k_proj.bias
self_attn.value.weight.data = esm_layer.self_attn.v_proj.weight
self_attn.value.bias.data = esm_layer.self_attn.v_proj.bias
if getattr(esm_layer.self_attn, "rot_emb", None) is not None:
# Matt: Although inv_freq is not a trainable weight, it is computed at model init and cached.
# During the training of ESM-2 the model was converted to float16 precision, which also converts
# the inv_freq tensor, and the loss of precision remains even if the model is loaded later as float32.
# If we recompute inv_freq without this loss of precision then we will get subtly different rotary
# embeddings, which are enough to cause significant discrepancies in model outputs. To avoid this,
# we make sure the new model copies the data from the old inv_freq.
self_attn.rotary_embeddings.inv_freq.data = esm_layer.self_attn.rot_emb.inv_freq
# LayerNorm changes for pre-activation
layer.attention.LayerNorm.weight = esm_layer.self_attn_layer_norm.weight
layer.attention.LayerNorm.bias = esm_layer.self_attn_layer_norm.bias
layer.LayerNorm.weight = esm_layer.final_layer_norm.weight
layer.LayerNorm.bias = esm_layer.final_layer_norm.bias
# self-attention output
self_output: EsmSelfOutput = layer.attention.output
assert self_output.dense.weight.shape == esm_layer.self_attn.out_proj.weight.shape
self_output.dense.weight = esm_layer.self_attn.out_proj.weight
self_output.dense.bias = esm_layer.self_attn.out_proj.bias
# intermediate
intermediate: EsmIntermediate = layer.intermediate
assert intermediate.dense.weight.shape == esm_layer.fc1.weight.shape
intermediate.dense.weight = esm_layer.fc1.weight
intermediate.dense.bias = esm_layer.fc1.bias
# output
bert_output: EsmOutput = layer.output
assert bert_output.dense.weight.shape == esm_layer.fc2.weight.shape
bert_output.dense.weight = esm_layer.fc2.weight
bert_output.dense.bias = esm_layer.fc2.bias
# end of layer
if is_folding_model:
model.esm_s_combine.data = esm.esm_s_combine.data
model.af2_to_esm.data = esm.af2_to_esm.data
transfer_and_check_weights(esm.embedding, model.embedding)
transfer_and_check_weights(esm.esm_s_mlp, model.esm_s_mlp)
transfer_and_check_weights(esm.trunk, model.trunk)
transfer_and_check_weights(esm.distogram_head, model.distogram_head)
transfer_and_check_weights(esm.ptm_head, model.ptm_head)
transfer_and_check_weights(esm.lm_head, model.lm_head)
transfer_and_check_weights(esm.lddt_head, model.lddt_head)
elif classification_head:
model.classifier.dense.weight = esm.esm.classification_heads["mnli"].dense.weight
model.classifier.dense.bias = esm.classification_heads["mnli"].dense.bias
model.classifier.out_proj.weight = esm.classification_heads["mnli"].out_proj.weight
model.classifier.out_proj.bias = esm.classification_heads["mnli"].out_proj.bias
else:
# LM Head
model.lm_head.dense.weight = esm.lm_head.dense.weight
model.lm_head.dense.bias = esm.lm_head.dense.bias
model.lm_head.layer_norm.weight = esm.lm_head.layer_norm.weight
model.lm_head.layer_norm.bias = esm.lm_head.layer_norm.bias
model.lm_head.decoder.weight = esm.lm_head.weight
model.lm_head.bias = esm.lm_head.bias
# Contact prediction head
transfer_and_check_weights(esm.contact_head, model.esm.contact_head)
# Prepare data (first 2 sequences from ESMStructuralSplitDataset superfamily / 4)
if is_folding_model:
# Folding models aren't trained on masked inputs and don't like mask tokens.
sample_data = SAMPLE_DATA[:2]
else:
sample_data = SAMPLE_DATA
if is_folding_model:
hf_tokenizer = get_esmfold_tokenizer()
hf_tokens = hf_tokenizer(
[row[1] for row in sample_data], return_tensors="pt", padding=True, add_special_tokens=False
)
esmfold_aas, esmfold_mask, _, _, _ = esmfold_encode_sequences([row[1] for row in sample_data])
success = torch.all(hf_tokens["input_ids"] == esmfold_aas) and torch.all(
hf_tokens["attention_mask"] == esmfold_mask
)
else:
# Let's check that we get the same results.
batch_converter = alphabet.get_batch_converter()
batch_labels, batch_strs, batch_tokens = batch_converter(sample_data)
# Prepare tokenizer and make sure it matches
with TemporaryDirectory() as tempdir:
vocab = "\n".join(alphabet.all_toks)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokens = hf_tokenizer([row[1] for row in sample_data], return_tensors="pt", padding=True)
success = torch.all(hf_tokens["input_ids"] == batch_tokens)
print("Do both models tokenizers output the same tokens?", "🔥" if success else "💩")
if not success:
raise Exception("Tokenization does not match!")
with torch.no_grad():
if is_folding_model:
# Let's test the model in parts
# ESMFold always converts the ESM stem to float16, which requires float16 ops
# that don't exist on CPU. Therefore, to test it we need to run it on GPU. However,
# ESMFold is what we in the community call a "big boy" and so we desperately avoid putting both the
# original and the converted model on the GPU at the same time.
their_output = esm.cuda().infer([row[1] for row in sample_data])
our_output = model.cuda()(
input_ids=hf_tokens["input_ids"].cuda(), attention_mask=hf_tokens["attention_mask"].cuda()
)
else:
our_output = model(**hf_tokens, output_hidden_states=True)
our_output = our_output["logits"]
if classification_head:
their_output = esm.model.classification_heads["mnli"](esm.extract_features(batch_tokens))
else:
their_output = esm(hf_tokens["input_ids"], repr_layers=list(range(999)))
their_output = their_output["logits"]
if is_folding_model:
max_absolute_diff = torch.max(torch.abs(our_output["positions"] - their_output["positions"])).item()
success = torch.allclose(our_output["positions"], their_output["positions"], atol=1e-5)
else:
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
if not is_folding_model:
# Let's check contact prediction too
our_output = model.predict_contacts(hf_tokens["input_ids"], hf_tokens["attention_mask"])
their_output = esm.predict_contacts(hf_tokens["input_ids"])
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print("Contact prediction testing:")
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
pathlib.Path(pytorch_dump_folder_path).mkdir(parents=True, exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
del esm # Free up some memory before continuing
print(f"Saving tokenizer to {pytorch_dump_folder_path}")
hf_tokenizer.save_pretrained(pytorch_dump_folder_path)
if push_to_repo:
model.push_to_hub(repo_id=push_to_repo, token_token=auth_token)
hf_tokenizer.push_to_hub(repo_id=push_to_repo, token_token=auth_token)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--pytorch_dump_folder_path", type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--classification_head", action="store_true", help="Whether to convert a final classification head."
)
parser.add_argument("--model", default=None, type=str, required=True, help="Name of model to convert.")
parser.add_argument("--push_to_repo", type=str, help="Repo to upload to (including username!).")
parser.add_argument("--auth_token", type=str, help="HuggingFace auth token.")
args = parser.parse_args()
convert_esm_checkpoint_to_pytorch(
args.model, args.pytorch_dump_folder_path, args.classification_head, args.push_to_repo, args.auth_token
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/modeling_tf_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch ESM model."""
from __future__ import annotations
import os
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
keras,
shape_list,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, stable_softmax
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
def rotate_half(x):
x1, x2 = tf.split(x, 2, axis=-1)
return tf.concat((-x2, x1), axis=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : tf.shape(x)[-2], :]
sin = sin[:, :, : tf.shape(x)[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + tf.linalg.matrix_transpose(x) # Transposes last two dimensions only
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = tf.reduce_sum(x, -1, keepdims=True)
a2 = tf.reduce_sum(x, -2, keepdims=True)
a12 = tf.reduce_sum(x, (-1, -2), keepdims=True)
avg = a1 * a2
avg = avg / a12
normalized = x - avg
return normalized
class TFRotaryEmbedding(keras.layers.Layer):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int, name=None):
super().__init__(name=name)
# Matt: The PyTorch version of this layer does a lot of work to cache values, but we just rely on TF compilation
# and/or XLA to sort out constants like that. It actually may not seem like this layer needs to be stateful at
# all when we benefit from TF compilation, but it does. The reason is that self.inv_freq is a buffer in the
# original implementation, but all the shared ESM checkpoints were trained with fp16 params. This means that
# the inv_freq tensor was stored as a float16, and we need to replicate those lower-precision values or our
# models give different outputs from the original.
self.dim = dim
def build(self, input_shape):
super().build(input_shape)
self.inv_freq = self.add_weight(
"inv_freq", shape=(self.dim // 2,), dtype=tf.float32, initializer=get_initializer(1.0), trainable=False
)
self.inv_freq.assign(
1.0 / (10000 ** (tf.range(start=0, limit=self.dim, delta=2, dtype=tf.float32) / self.dim))
)
def _compute_cos_sin(self, x, seq_dimension=2):
seq_len = tf.shape(x)[seq_dimension]
t = tf.range(seq_len, dtype=self.inv_freq.dtype)
freqs = tf.einsum("i, j -> ij", t, self.inv_freq) # Outer multiplication
emb = tf.concat((freqs, freqs), axis=-1)[None, None, :, :]
return tf.cos(emb), tf.sin(emb)
def call(self, q: tf.Tensor, k: tf.Tensor) -> Tuple[tf.Tensor, tf.Tensor]:
cos_emb, sin_emb = self._compute_cos_sin(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, cos_emb, sin_emb),
apply_rotary_pos_emb(k, cos_emb, sin_emb),
)
class TFEsmContactPredictionHead(keras.layers.Layer):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
name=None,
):
super().__init__(name=name)
self.eos_idx = eos_idx
self.in_features = in_features
self.regression = keras.layers.Dense(1, use_bias=bias, activation="sigmoid", name="regression")
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "regression", None) is not None:
with tf.name_scope(self.regression.name):
self.regression.build((None, self.in_features))
def call(self, tokens, attentions):
# remove eos token attentions
eos_mask = tf.cast(tokens != self.eos_idx, attentions.dtype)
eos_mask = tf.expand_dims(eos_mask, 1) * tf.expand_dims(eos_mask, 2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = shape_list(attentions)
attentions = tf.reshape(attentions, (batch_size, layers * heads, seqlen, seqlen))
# features: batch x channels x tokens x tokens (symmetric)
attentions = average_product_correct(symmetrize(attentions))
attentions = tf.transpose(attentions, perm=(0, 2, 3, 1))
return tf.squeeze(self.regression(attentions), 3)
class TFEsmEmbeddings(keras.layers.Layer):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config, name=None):
super().__init__(name=name)
self.word_embeddings = keras.layers.Embedding(
config.vocab_size,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="word_embeddings",
)
self.position_embeddings = keras.layers.Embedding(
config.max_position_embeddings,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="position_embeddings",
)
if config.emb_layer_norm_before:
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
else:
self.layer_norm = None
# Matt: I think this line was copied incorrectly from BERT, disabling for now
# self.dropout = Dropout(config.hidden_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.position_ids = tf.range(config.max_position_embeddings)[None, :]
self.padding_idx = config.pad_token_id
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
self.config = config
def call(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings = tf.where((input_ids == self.mask_token_id)[:, :, None], 0.0, embeddings)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = tf.cast(tf.reduce_sum(attention_mask, axis=-1), tf.float32)
masked_tokens = input_ids == self.mask_token_id
mask_ratio_observed = tf.math.count_nonzero(masked_tokens, dtype=tf.float32, axis=-1) / src_lengths
embeddings = embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = embeddings * tf.cast(tf.expand_dims(attention_mask, -1), embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: tf.Tensor
Returns: tf.Tensor
"""
input_shape = shape_list(inputs_embeds)[:-1]
sequence_length = input_shape[1]
position_ids = tf.range(
start=self.padding_idx + 1, limit=sequence_length + self.padding_idx + 1, dtype=tf.int64
)
return tf.broadcast_to(tf.expand_dims(position_ids, 0), input_shape)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "word_embeddings", None) is not None:
with tf.name_scope(self.word_embeddings.name):
self.word_embeddings.build(None)
if getattr(self, "position_embeddings", None) is not None:
with tf.name_scope(self.position_embeddings.name):
self.position_embeddings.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
class TFEsmSelfAttention(keras.layers.Layer):
def __init__(self, config, position_embedding_type=None, name=None):
super().__init__(name=name)
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key"
)
self.value = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = keras.layers.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = keras.layers.Embedding(
2 * config.max_position_embeddings - 1,
self.attention_head_size,
embeddings_initializer=get_initializer(config.initializer_range),
)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = TFRotaryEmbedding(dim=self.attention_head_size, name="rotary_embeddings")
self.is_decoder = config.is_decoder
self.config = config
def transpose_for_scores(self, x: tf.Tensor) -> tf.Tensor:
new_x_shape = shape_list(x)[:-1] + [self.num_attention_heads, self.attention_head_size]
x = tf.reshape(x, new_x_shape)
return tf.transpose(x, perm=(0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = tf.concat([past_key_value[0], key_layer], axis=2)
value_layer = tf.concat([past_key_value[1], value_layer], axis=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = shape_list(hidden_states)[1]
position_ids_l = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), -1)
position_ids_r = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), 0)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = tf.cast(positional_embedding, query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = tf.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = attention_probs @ value_layer
context_layer = tf.transpose(context_layer, perm=(0, 2, 1, 3))
new_context_layer_shape = shape_list(context_layer)[:-2] + [self.all_head_size]
context_layer = tf.reshape(context_layer, new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "query", None) is not None:
with tf.name_scope(self.query.name):
self.query.build([None, None, self.config.hidden_size])
if getattr(self, "key", None) is not None:
with tf.name_scope(self.key.name):
self.key.build([None, None, self.config.hidden_size])
if getattr(self, "value", None) is not None:
with tf.name_scope(self.value.name):
self.value.build([None, None, self.config.hidden_size])
if getattr(self, "rotary_embeddings", None) is not None:
with tf.name_scope(self.rotary_embeddings.name):
self.rotary_embeddings.build(None)
class TFEsmSelfOutput(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmAttention(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.self = TFEsmSelfAttention(config, name="self")
self.output_layer = TFEsmSelfOutput(config, name="output")
self.pruned_heads = set()
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.config = config
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
attention_output = self.output_layer(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self", None) is not None:
with tf.name_scope(self.self.name):
self.self.build(None)
if getattr(self, "output_layer", None) is not None:
with tf.name_scope(self.output_layer.name):
self.output_layer.build(None)
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFEsmIntermediate(keras.layers.Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.intermediate_size,
kernel_initializer=get_initializer(config.initializer_range),
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = tf.nn.gelu(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmOutput(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.intermediate_size])
class TFEsmLayer(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = TFEsmAttention(config, name="attention")
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = TFEsmAttention(config)
self.intermediate = TFEsmIntermediate(config, name="intermediate")
self.output_layer = TFEsmOutput(config, name="output")
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.config = config
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
training=training,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
training=training,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layernorm_output = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(hidden_states=layernorm_output)
layer_output = self.output_layer(
hidden_states=intermediate_output, input_tensor=attention_output, training=training
)
outputs = (layer_output,) + outputs # add attentions if we output them
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "intermediate", None) is not None:
with tf.name_scope(self.intermediate.name):
self.intermediate.build(None)
if getattr(self, "output_layer", None) is not None:
with tf.name_scope(self.output_layer.name):
self.output_layer.build(None)
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFEsmEncoder(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.config = config
self.layer = [TFEsmLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
self.emb_layer_norm_after = keras.layers.LayerNormalization(
epsilon=config.layer_norm_eps, name="emb_layer_norm_after"
)
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
training=False,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "emb_layer_norm_after", None) is not None:
with tf.name_scope(self.emb_layer_norm_after.name):
self.emb_layer_norm_after.build([None, None, self.config.hidden_size])
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->Esm
class TFEsmPooler(keras.layers.Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
ESM_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Keras [Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it as a
regular Keras model and refer to the TF/Keras documentation for all matters related to general usage and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmMainLayer(keras.layers.Layer):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config, add_pooling_layer=True, name=None, **kwargs):
super().__init__(name=name, **kwargs)
self.config = config
self.is_decoder = config.is_decoder
self.embeddings = TFEsmEmbeddings(config, name="embeddings")
self.encoder = TFEsmEncoder(config, name="encoder")
self.pooler = TFEsmPooler(config, name="pooler") if add_pooling_layer else None
self.contact_head = TFEsmContactPredictionHead(
in_features=self.config.num_hidden_layers * self.config.num_attention_heads, bias=True, name="contact_head"
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "pooler", None) is not None:
with tf.name_scope(self.pooler.name):
self.pooler.build(None)
if getattr(self, "contact_head", None) is not None:
with tf.name_scope(self.contact_head.name):
self.contact_head.build(None)
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value: tf.Variable):
self.embeddings.word_embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
raise NotImplementedError
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
if not self.config.is_decoder:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
if past_key_values is None:
past_key_values_length = 0
past_key_values = [None] * len(self.encoder.layer)
else:
past_key_values_length = shape_list(past_key_values[0][0])[-2]
if attention_mask is None:
attention_mask = tf.fill(dims=(batch_size, seq_length + past_key_values_length), value=1)
embedding_output = self.embeddings(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
training=training,
)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask_shape = shape_list(attention_mask)
mask_seq_length = seq_length + past_key_values_length
# Copied from `modeling_tf_t5.py`
# Provided a padding mask of dimensions [batch_size, mask_seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
if self.is_decoder:
seq_ids = tf.range(mask_seq_length)
causal_mask = tf.less_equal(
tf.tile(seq_ids[None, None, :], (batch_size, mask_seq_length, 1)),
seq_ids[None, :, None],
)
causal_mask = tf.cast(causal_mask, dtype=attention_mask.dtype)
extended_attention_mask = causal_mask * attention_mask[:, None, :]
attention_mask_shape = shape_list(extended_attention_mask)
extended_attention_mask = tf.reshape(
extended_attention_mask, (attention_mask_shape[0], 1, attention_mask_shape[1], attention_mask_shape[2])
)
if past_key_values[0] is not None:
# attention_mask needs to be sliced to the shape `[batch_size, 1, from_seq_length - cached_seq_length, to_seq_length]
extended_attention_mask = extended_attention_mask[:, :, -seq_length:, :]
else:
extended_attention_mask = tf.reshape(
attention_mask, (attention_mask_shape[0], 1, 1, attention_mask_shape[1])
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, dtype=embedding_output.dtype)
one_cst = tf.constant(1.0, dtype=embedding_output.dtype)
ten_thousand_cst = tf.constant(-10000.0, dtype=embedding_output.dtype)
extended_attention_mask = tf.multiply(tf.subtract(one_cst, extended_attention_mask), ten_thousand_cst)
# Copied from `modeling_tf_t5.py` with -1e9 -> -10000
if self.is_decoder and encoder_attention_mask is not None:
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
encoder_attention_mask = tf.cast(encoder_attention_mask, dtype=extended_attention_mask.dtype)
num_dims_encoder_attention_mask = len(shape_list(encoder_attention_mask))
if num_dims_encoder_attention_mask == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if num_dims_encoder_attention_mask == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
# T5 has a mask that can compare sequence ids, we can simulate this here with this transposition
# Cf. https://github.com/tensorflow/mesh/blob/8d2465e9bc93129b913b5ccc6a59aa97abd96ec6/mesh_tensorflow/transformer/transformer_layers.py#L270
# encoder_extended_attention_mask = tf.math.equal(encoder_extended_attention_mask,
# tf.transpose(encoder_extended_attention_mask, perm=(-1, -2)))
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.config.num_hidden_layers
encoder_outputs = self.encoder(
hidden_states=embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(hidden_states=sequence_output) if self.pooler is not None else None
if not return_dict:
return (
sequence_output,
pooled_output,
) + encoder_outputs[1:]
return TFBaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = tf.stack(attns, axis=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attention_mask = tf.cast(attention_mask, attns.dtype)
attns *= attention_mask[:, None, None, None]
attns *= attention_mask[:, None, None, :, None]
return self.contact_head(tokens, attns)
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmModel(TFEsmPreTrainedModel):
def __init__(self, config: EsmConfig, add_pooling_layer=True, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.esm = TFEsmMainLayer(config, add_pooling_layer=add_pooling_layer, name="esm")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
r"""
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
"""
outputs = self.esm(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class TFEsmForMaskedLM(TFEsmPreTrainedModel, TFMaskedLanguageModelingLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.lm_head = TFEsmLMHead(config, name="lm_head")
if config.tie_word_embeddings:
# Ensure word embeddings are built so that we actually have something to tie
with tf.name_scope(os.path.join(self._name_scope(), "esm", "embeddings", "word_embeddings")):
self.esm.embeddings.word_embeddings.build((None, None))
self.lm_head.decoder = self.esm.embeddings.word_embeddings.weights[0]
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
def get_lm_head(self):
return self.lm_head
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFMaskedLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, *optional*, defaults to `{}`):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
masked_lm_loss = self.hf_compute_loss(labels=labels, logits=prediction_scores)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFMaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build(None)
class TFEsmLMHead(keras.layers.Layer):
"""ESM Head for masked language modeling."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
if config.tie_word_embeddings:
self.decoder = None
else:
self.decoder = keras.layers.Dense(
config.vocab_size,
kernel_initializer=get_initializer(config.initializer_range),
name="decoder",
use_bias=False,
)
self.config = config
def build(self, input_shape=None):
# Separate bias to match the PT model and allow weight cross-loading to work
# Put it in the build so it gets the right name when adding it as a weight
if self.built:
return
self.built = True
self.bias = self.add_weight("bias", shape=(self.config.vocab_size,), initializer="zeros", trainable=True)
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "decoder", None) is not None and not self.config.tie_word_embeddings:
with tf.name_scope(self.decoder.name):
self.decoder.build([None, None, self.config.hidden_size])
def get_bias(self):
return {"bias": self.bias}
def call(self, features):
x = self.dense(features)
x = tf.nn.gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
if self.config.tie_word_embeddings:
x = tf.matmul(x, self.decoder, transpose_b=True) + self.bias
else:
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForSequenceClassification(TFEsmPreTrainedModel, TFSequenceClassificationLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.classifier = TFEsmClassificationHead(config, name="classifier")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build(None)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForTokenClassification(TFEsmPreTrainedModel, TFTokenClassificationLoss):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = keras.layers.Dense(config.num_labels, name="classifier")
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.hidden_size])
class TFEsmClassificationHead(keras.layers.Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.out_proj = keras.layers.Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
activation="linear",
name="out_proj",
)
self.config = config
def call(self, features, training=False):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x, training=training)
x = self.dense(x)
x = self.dropout(x, training=training)
x = self.out_proj(x)
return x
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.config.hidden_size])
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: tf.Tensor x:
Returns: tf.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = tf.cast(input_ids != padding_idx, tf.int64)
incremental_indices = (tf.cumsum(mask, axis=1) + past_key_values_length) * mask
return incremental_indices + padding_idx
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/__init__.py | # Copyright 2022 Facebook and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {
"configuration_esm": ["EsmConfig"],
"tokenization_esm": ["EsmTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_esm"] = [
"EsmForMaskedLM",
"EsmForSequenceClassification",
"EsmForTokenClassification",
"EsmModel",
"EsmPreTrainedModel",
]
_import_structure["modeling_esmfold"] = ["EsmForProteinFolding", "EsmFoldPreTrainedModel"]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_esm"] = [
"TFEsmForMaskedLM",
"TFEsmForSequenceClassification",
"TFEsmForTokenClassification",
"TFEsmModel",
"TFEsmPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_esm import EsmConfig
from .tokenization_esm import EsmTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_esm import (
EsmForMaskedLM,
EsmForSequenceClassification,
EsmForTokenClassification,
EsmModel,
EsmPreTrainedModel,
)
from .modeling_esmfold import EsmFoldPreTrainedModel, EsmForProteinFolding
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_esm import (
TFEsmForMaskedLM,
TFEsmForSequenceClassification,
TFEsmForTokenClassification,
TFEsmModel,
TFEsmPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/modeling_esmfold.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...integrations.deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esmfold_v1"
_CONFIG_FOR_DOC = "EsmConfig"
@dataclass
class EsmForProteinFoldingOutput(ModelOutput):
"""
Output type of [`EsmForProteinFoldingOutput`].
Args:
frames (`torch.FloatTensor`):
Output frames.
sidechain_frames (`torch.FloatTensor`):
Output sidechain frames.
unnormalized_angles (`torch.FloatTensor`):
Predicted unnormalized backbone and side chain torsion angles.
angles (`torch.FloatTensor`):
Predicted backbone and side chain torsion angles.
positions (`torch.FloatTensor`):
Predicted positions of the backbone and side chain atoms.
states (`torch.FloatTensor`):
Hidden states from the protein folding trunk.
s_s (`torch.FloatTensor`):
Per-residue embeddings derived by concatenating the hidden states of each layer of the ESM-2 LM stem.
s_z (`torch.FloatTensor`):
Pairwise residue embeddings.
distogram_logits (`torch.FloatTensor`):
Input logits to the distogram used to compute residue distances.
lm_logits (`torch.FloatTensor`):
Logits output by the ESM-2 protein language model stem.
aatype (`torch.FloatTensor`):
Input amino acids (AlphaFold2 indices).
atom14_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom14 representation.
residx_atom14_to_atom37 (`torch.FloatTensor`):
Mapping between atoms in the atom14 and atom37 representations.
residx_atom37_to_atom14 (`torch.FloatTensor`):
Mapping between atoms in the atom37 and atom14 representations.
atom37_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom37 representation.
residue_index (`torch.FloatTensor`):
The index of each residue in the protein chain. Unless internal padding tokens are used, this will just be
a sequence of integers from 0 to `sequence_length`.
lddt_head (`torch.FloatTensor`):
Raw outputs from the lddt head used to compute plddt.
plddt (`torch.FloatTensor`):
Per-residue confidence scores. Regions of low confidence may indicate areas where the model's prediction is
uncertain, or where the protein structure is disordered.
ptm_logits (`torch.FloatTensor`):
Raw logits used for computing ptm.
ptm (`torch.FloatTensor`):
TM-score output representing the model's high-level confidence in the overall structure.
aligned_confidence_probs (`torch.FloatTensor`):
Per-residue confidence scores for the aligned structure.
predicted_aligned_error (`torch.FloatTensor`):
Predicted error between the model's prediction and the ground truth.
max_predicted_aligned_error (`torch.FloatTensor`):
Per-sample maximum predicted error.
"""
frames: torch.FloatTensor = None
sidechain_frames: torch.FloatTensor = None
unnormalized_angles: torch.FloatTensor = None
angles: torch.FloatTensor = None
positions: torch.FloatTensor = None
states: torch.FloatTensor = None
s_s: torch.FloatTensor = None
s_z: torch.FloatTensor = None
distogram_logits: torch.FloatTensor = None
lm_logits: torch.FloatTensor = None
aatype: torch.FloatTensor = None
atom14_atom_exists: torch.FloatTensor = None
residx_atom14_to_atom37: torch.FloatTensor = None
residx_atom37_to_atom14: torch.FloatTensor = None
atom37_atom_exists: torch.FloatTensor = None
residue_index: torch.FloatTensor = None
lddt_head: torch.FloatTensor = None
plddt: torch.FloatTensor = None
ptm_logits: torch.FloatTensor = None
ptm: torch.FloatTensor = None
aligned_confidence_probs: torch.FloatTensor = None
predicted_aligned_error: torch.FloatTensor = None
max_predicted_aligned_error: torch.FloatTensor = None
ESMFOLD_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
masking_pattern (`torch.LongTensor` of shape `({0})`, *optional*):
Locations of tokens to mask during training as a form of regularization. Mask values selected in `[0, 1]`.
num_recycles (`int`, *optional*, defaults to `None`):
Number of times to recycle the input sequence. If `None`, defaults to `config.num_recycles`. "Recycling"
consists of passing the output of the folding trunk back in as input to the trunk. During training, the
number of recycles should vary with each batch, to ensure that the model learns to output valid predictions
after each recycle. During inference, num_recycles should be set to the highest value that the model was
trained with for maximum accuracy. Accordingly, when this value is set to `None`, config.max_recycles is
used.
"""
def is_fp16_enabled():
# Autocast world
fp16_enabled = torch.get_autocast_gpu_dtype() == torch.float16
fp16_enabled = fp16_enabled and torch.is_autocast_enabled()
return fp16_enabled
def is_deepspeed_initialized():
if is_deepspeed_available():
return False
else:
try:
import deepspeed
# This is not available in all DeepSpeed versions.
return deepspeed.utils.is_initialized()
except Exception:
return False
def collate_dense_tensors(samples: List[torch.Tensor], pad_v: float = 0) -> torch.Tensor:
"""
Takes a list of tensors with the following dimensions:
[(d_11, ..., d_1K),
(d_21, ..., d_2K), ..., (d_N1, ..., d_NK)]
and stack + pads them into a single tensor of:
(N, max_i=1,N { d_i1 }, ..., max_i=1,N {diK})
"""
if len(samples) == 0:
return torch.Tensor()
if len({x.dim() for x in samples}) != 1:
raise RuntimeError(f"Samples has varying dimensions: {[x.dim() for x in samples]}")
(device,) = tuple({x.device for x in samples}) # assumes all on same device
max_shape = [max(lst) for lst in zip(*[x.shape for x in samples])]
result = torch.empty(len(samples), *max_shape, dtype=samples[0].dtype, device=device)
result.fill_(pad_v)
for i in range(len(samples)):
result_i = result[i]
t = samples[i]
result_i[tuple(slice(0, k) for k in t.shape)] = t
return result
def flatten_final_dims(t: torch.Tensor, no_dims: int):
return t.reshape(t.shape[:-no_dims] + (-1,))
def permute_final_dims(tensor: torch.Tensor, inds: List[int]):
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def dict_multimap(fn, dicts):
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if isinstance(v, dict):
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def trunc_normal_init_(weights, scale=1.0, fan="fan_in"):
shape = weights.shape
scale = scale / max(1, shape[1])
if not is_scipy_available():
logger.warning(
"This init requires scipy, but scipy was not found, default to an approximation that might not be"
" equivalent."
)
std = math.sqrt(scale)
torch.nn.init.normal_(weights, std=std).clamp(min=0.0, max=2.0 * std)
else:
from scipy.stats import truncnorm
std = math.sqrt(scale) / truncnorm.std(a=-2, b=2, loc=0, scale=1)
samples = truncnorm.rvs(a=-2, b=2, loc=0, scale=std, size=weights.numel())
samples = np.reshape(samples, shape)
weights.copy_(torch.tensor(samples, device=weights.device))
def ipa_point_weights_init_(weights):
with torch.no_grad():
softplus_inverse_1 = 0.541324854612918
weights.fill_(softplus_inverse_1)
class EsmFoldLinear(nn.Linear):
"""
A Linear layer with built-in nonstandard initializations. Called just like torch.nn.Linear.
Implements the initializers in 1.11.4, plus some additional ones found in the code.
"""
def __init__(
self,
in_dim: int,
out_dim: int,
bias: bool = True,
init: str = "default",
init_fn: Optional[Callable[[torch.Tensor, torch.Tensor], None]] = None,
):
"""
Args:
in_dim:
The final dimension of inputs to the layer
out_dim:
The final dimension of layer outputs
bias:
Whether to learn an additive bias. True by default
init:
The initializer to use. Choose from:
"default": LeCun fan-in truncated normal initialization "relu": He initialization w/ truncated normal
distribution "glorot": Fan-average Glorot uniform initialization "gating": Weights=0, Bias=1 "normal":
Normal initialization with std=1/sqrt(fan_in) "final": Weights=0, Bias=0
Overridden by init_fn if the latter is not None.
init_fn:
A custom initializer taking weight and bias as inputs. Overrides init if not None.
"""
super().__init__(in_dim, out_dim, bias=bias)
if bias:
with torch.no_grad():
self.bias.fill_(0)
self.init = init
self.init_fn = init_fn
if init not in ["default", "relu", "glorot", "gating", "normal", "final"]:
raise ValueError("Invalid init string.")
class EsmFoldLayerNorm(nn.Module):
def __init__(self, c_in, eps=1e-5):
super().__init__()
self.c_in = (c_in,)
self.eps = eps
self.weight = nn.Parameter(torch.ones(c_in))
self.bias = nn.Parameter(torch.zeros(c_in))
def forward(self, x):
d = x.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
out = nn.functional.layer_norm(x, self.c_in, self.weight.to(dtype=d), self.bias.to(dtype=d), self.eps)
else:
out = nn.functional.layer_norm(x, self.c_in, self.weight, self.bias, self.eps)
return out
@torch.jit.ignore
def softmax_no_cast(t: torch.Tensor, dim: int = -1) -> torch.Tensor:
"""
Softmax, but without automatic casting to fp32 when the input is of type bfloat16
"""
d = t.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
s = torch.nn.functional.softmax(t, dim=dim)
else:
s = torch.nn.functional.softmax(t, dim=dim)
return s
class EsmFoldAttention(nn.Module):
"""
Standard multi-head attention using AlphaFold's default layer initialization. Allows multiple bias vectors.
"""
def __init__(
self,
c_q: int,
c_k: int,
c_v: int,
c_hidden: int,
no_heads: int,
gating: bool = True,
):
"""
Args:
c_q:
Input dimension of query data
c_k:
Input dimension of key data
c_v:
Input dimension of value data
c_hidden:
Per-head hidden dimension
no_heads:
Number of attention heads
gating:
Whether the output should be gated using query data
"""
super().__init__()
self.c_q = c_q
self.c_k = c_k
self.c_v = c_v
self.c_hidden = c_hidden
self.no_heads = no_heads
self.gating = gating
# DISCREPANCY: c_hidden is not the per-head channel dimension, as
# stated in the supplement, but the overall channel dimension.
self.linear_q = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_k = EsmFoldLinear(self.c_k, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_v = EsmFoldLinear(self.c_v, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_o = EsmFoldLinear(self.c_hidden * self.no_heads, self.c_q, init="final")
self.linear_g = None
if self.gating:
self.linear_g = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, init="gating")
self.sigmoid = nn.Sigmoid()
def _prep_qkv(self, q_x: torch.Tensor, kv_x: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
# [*, Q/K/V, H * C_hidden]
q = self.linear_q(q_x)
k = self.linear_k(kv_x)
v = self.linear_v(kv_x)
# [*, Q/K, H, C_hidden]
q = q.view(q.shape[:-1] + (self.no_heads, -1))
k = k.view(k.shape[:-1] + (self.no_heads, -1))
v = v.view(v.shape[:-1] + (self.no_heads, -1))
# [*, H, Q/K, C_hidden]
q = q.transpose(-2, -3)
k = k.transpose(-2, -3)
v = v.transpose(-2, -3)
q /= math.sqrt(self.c_hidden)
return q, k, v
def _wrap_up(self, o: torch.Tensor, q_x: torch.Tensor) -> torch.Tensor:
if self.linear_g is not None:
g = self.sigmoid(self.linear_g(q_x))
# [*, Q, H, C_hidden]
g = g.view(g.shape[:-1] + (self.no_heads, -1))
o = o * g
# [*, Q, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, Q, C_q]
o = self.linear_o(o)
return o
def forward(
self,
q_x: torch.Tensor,
kv_x: torch.Tensor,
biases: Optional[List[torch.Tensor]] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
lma_q_chunk_size: int = 1024,
lma_kv_chunk_size: int = 4096,
use_flash: bool = False,
flash_mask: Optional[torch.Tensor] = None,
) -> torch.Tensor:
"""
Args:
q_x:
[*, Q, C_q] query data
kv_x:
[*, K, C_k] key data
biases:
List of biases that broadcast to [*, H, Q, K]
use_memory_efficient_kernel:
Whether to use a custom memory-efficient attention kernel. This should be the default choice for most.
If none of the "use_<...>" flags are True, a stock PyTorch implementation is used instead
use_lma:
Whether to use low-memory attention (Staats & Rabe 2021). If none of the "use_<...>" flags are True, a
stock PyTorch implementation is used instead
lma_q_chunk_size:
Query chunk size (for LMA)
lma_kv_chunk_size:
Key/Value chunk size (for LMA)
Returns
[*, Q, C_q] attention update
"""
if use_lma and (lma_q_chunk_size is None or lma_kv_chunk_size is None):
raise ValueError("If use_lma is specified, lma_q_chunk_size and lma_kv_chunk_size must be provided")
if use_flash and biases is not None:
raise ValueError("use_flash is incompatible with the bias option. For masking, use flash_mask instead")
attn_options = [use_memory_efficient_kernel, use_lma, use_flash]
if sum(attn_options) > 1:
raise ValueError("Choose at most one alternative attention algorithm")
if biases is None:
biases = []
# [*, H, Q/K, C_hidden]
query, key, value = self._prep_qkv(q_x, kv_x)
key = permute_final_dims(key, (1, 0))
# [*, H, Q, K]
output = torch.matmul(query, key)
for b in biases:
output += b
output = softmax_no_cast(output, -1)
# [*, H, Q, C_hidden]
output = torch.matmul(output, value)
output = output.transpose(-2, -3)
output = self._wrap_up(output, q_x)
return output
class EsmFoldTriangleAttention(nn.Module):
def __init__(self, c_in, c_hidden, no_heads, starting=True, inf=1e9):
"""
Args:
c_in:
Input channel dimension
c_hidden:
Overall hidden channel dimension (not per-head)
no_heads:
Number of attention heads
"""
super().__init__()
self.c_in = c_in
self.c_hidden = c_hidden
self.no_heads = no_heads
self.starting = starting
self.inf = inf
self.layer_norm = LayerNorm(self.c_in)
self.linear = EsmFoldLinear(c_in, self.no_heads, bias=False, init="normal")
self.mha = EsmFoldAttention(self.c_in, self.c_in, self.c_in, self.c_hidden, self.no_heads)
@torch.jit.ignore
def _chunk(
self,
x: torch.Tensor,
biases: List[torch.Tensor],
chunk_size: int,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"triangle! triangle!"
mha_inputs = {
"q_x": x,
"kv_x": x,
"biases": biases,
}
return chunk_layer(
partial(self.mha, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma),
mha_inputs,
chunk_size=chunk_size,
no_batch_dims=len(x.shape[:-2]),
_out=x if inplace_safe else None,
)
def forward(
self,
x: torch.Tensor,
mask: Optional[torch.Tensor] = None,
chunk_size: Optional[int] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"""
Args:
x:
[*, I, J, C_in] input tensor (e.g. the pair representation)
Returns:
[*, I, J, C_in] output tensor
"""
if mask is None:
# [*, I, J]
mask = x.new_ones(
x.shape[:-1],
)
if not self.starting:
x = x.transpose(-2, -3)
mask = mask.transpose(-1, -2)
# [*, I, J, C_in]
x = self.layer_norm(x)
# [*, I, 1, 1, J]
mask_bias = (self.inf * (mask - 1))[..., :, None, None, :]
# [*, H, I, J]
triangle_bias = permute_final_dims(self.linear(x), (2, 0, 1))
# [*, 1, H, I, J]
triangle_bias = triangle_bias.unsqueeze(-4)
biases = [mask_bias, triangle_bias]
if chunk_size is not None:
x = self._chunk(
x,
biases,
chunk_size,
use_memory_efficient_kernel=use_memory_efficient_kernel,
use_lma=use_lma,
inplace_safe=inplace_safe,
)
else:
x = self.mha(
q_x=x, kv_x=x, biases=biases, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma
)
if not self.starting:
x = x.transpose(-2, -3)
return x
class EsmFoldTriangleMultiplicativeUpdate(nn.Module):
"""
Implements Algorithms 11 and 12.
"""
def __init__(self, config, _outgoing=True):
super().__init__()
c_hidden = config.pairwise_state_dim
self._outgoing = _outgoing
self.linear_a_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_a_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_b_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_b_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_z = EsmFoldLinear(c_hidden, c_hidden, init="final")
self.layer_norm_in = LayerNorm(c_hidden)
self.layer_norm_out = LayerNorm(c_hidden)
self.sigmoid = nn.Sigmoid()
def _combine_projections(
self, a: torch.Tensor, b: torch.Tensor, _inplace_chunk_size: Optional[int] = None
) -> torch.Tensor:
if self._outgoing:
a = permute_final_dims(a, (2, 0, 1))
b = permute_final_dims(b, (2, 1, 0))
else:
a = permute_final_dims(a, (2, 1, 0))
b = permute_final_dims(b, (2, 0, 1))
if _inplace_chunk_size is not None:
# To be replaced by torch vmap
for i in range(0, a.shape[-3], _inplace_chunk_size):
a_chunk = a[..., i : i + _inplace_chunk_size, :, :]
b_chunk = b[..., i : i + _inplace_chunk_size, :, :]
a[..., i : i + _inplace_chunk_size, :, :] = torch.matmul(
a_chunk,
b_chunk,
)
p = a
else:
p = torch.matmul(a, b)
return permute_final_dims(p, (1, 2, 0))
def _inference_forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_chunk_size: Optional[int] = None,
with_add: bool = True,
):
"""
Args:
z:
A [*, N, N, C_z] pair representation
mask:
A [*, N, N] pair mask
inplace_chunk_size:
Size of chunks used in the main computation. Increase to trade memory for speed.
with_add:
If True, z is overwritten with (z + update). Otherwise, it is overwritten with (update).
Returns:
A reference to the overwritten z
More memory-efficient, inference-only version of the forward function. Uses in-place operations, fusion of the
addition that happens after this module in the Evoformer, a smidge of recomputation, and a cache of overwritten
values to lower peak memory consumption of this module from 5x the size of the input tensor z to 2.5x its size.
Useful for inference on extremely long sequences.
It works as follows. We will make reference to variables used in the default forward implementation below.
Naively, triangle multiplication attention requires the manifestation of 5 tensors the size of z: 1) z, the
"square" input tensor, 2) a, the first projection of z, 3) b, the second projection of b, 4) g, a z-sized mask,
and 5) a z-sized tensor for intermediate computations. For large N, this is prohibitively expensive; for
N=4000, for example, z is more than 8GB alone. To avoid this problem, we compute b, g, and all intermediate
tensors in small chunks, noting that the chunks required to compute a chunk of the output depend only on the
tensor a and corresponding vertical and horizontal chunks of z. This suggests an algorithm that loops over
pairs of chunks of z: hereafter "columns" and "rows" of z, even though each "column" and "row" in fact contains
inplace_chunk_size contiguous true columns and rows of z. Writing output chunks to a new tensor would bring
total memory consumption down to 3x the size of z. However, more memory can be saved by writing output chunks
directly to z in-place. WLOG, we choose to write output chunks vertically, overwriting the ith "column" of z at
the end of the ith iteration of the main loop. Despite this overwriting, the ith column is always one column
ahead of previously overwritten columns and can be recovered directly from z. After the first iteration,
however, the ith row of z is always at least partially overwritten. For this reason, we introduce the z-cache,
a tensor one-half the size of z. The z-cache initially contains the left half (2nd and 3rd quadrants) of z. For
0 < i < N/2, the missing left part of the ith row of z is recovered from this cache at the beginning of the ith
iteration. Once i exceeds n/2, the cache is "reoriented" to encompass the 3rd and 4th quadrants of z instead.
Though the 3rd quadrant of the original z is entirely overwritten at this point, it can be recovered from the
z-cache itself. Thereafter, the ith row of z can be recovered in its entirety from the reoriented z-cache.
After the final iteration, z has been completely overwritten and contains the triangular multiplicative update.
If with_add is True, it instead contains the sum of z and the triangular multiplicative update. In either case,
peak memory consumption is just 2.5x the size of z, disregarding memory used for chunks and other small
variables.
"""
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
def compute_projection_helper(pair, mask, a=True):
if a:
linear_g = self.linear_a_g
linear_p = self.linear_a_p
else:
linear_g = self.linear_b_g
linear_p = self.linear_b_p
pair = self.layer_norm_in(pair)
p = linear_g(pair)
p.sigmoid_()
p *= linear_p(pair)
p *= mask
p = permute_final_dims(p, (2, 0, 1))
return p
def compute_projection(pair, mask, a=True, chunked=True):
need_transpose = self._outgoing ^ a
if not chunked:
p = compute_projection_helper(pair, mask, a)
if need_transpose:
p = p.transpose(-1, -2)
else:
# This computation is chunked so as not to exceed our 2.5x
# budget with a large intermediate tensor
linear_g = self.linear_a_g if a else self.linear_b_g
c = linear_g.bias.shape[-1]
out_shape = pair.shape[:-3] + (c,) + pair.shape[-3:-1]
p = pair.new_zeros(out_shape)
for i in range(0, pair.shape[-3], inplace_chunk_size):
pair_chunk = pair[..., i : i + inplace_chunk_size, :, :]
pair_chunk = compute_projection_helper(
pair[..., i : i + inplace_chunk_size, :, :],
mask[..., i : i + inplace_chunk_size, :, :],
a,
)
if need_transpose:
pair_chunk = pair_chunk.transpose(-1, -2)
p[..., i : i + inplace_chunk_size] = pair_chunk
else:
p[..., i : i + inplace_chunk_size, :] = pair_chunk
del pair_chunk
return p
# We start by fully manifesting a. In addition to the input, this
# brings total memory consumption to 2x z (disregarding size of chunks)
# [*, N, N, c]
a = compute_projection(z, mask, True, chunked=True)
if inplace_chunk_size is not None:
n = a.shape[-1]
half_n = n // 2 + n % 2
row_dim = -3
col_dim = -2
b_chunk_dim = row_dim if self._outgoing else col_dim
def empty_slicer(t):
return [slice(None) for _ in t.shape]
def slice_tensor(t, start, end, dim):
# Slices start:end from the dim dimension of t
s = empty_slicer(t)
s[dim] = slice(start, end)
return t[s]
def flip_z_cache_(z_cache, z):
# "Reorient" the z_cache (see below), filling it with quadrants
# 3---recovered from the z_cache---and 4---recovered from z---
# of the input tensor z.
quadrant_3 = slice_tensor(z_cache, half_n, None, row_dim)
z_cache = z_cache.transpose(row_dim, col_dim)
# If n is odd, we need to shrink the z_cache by one row
z_cache = z_cache[..., : (n // 2), :, :]
# Move the 3rd quadrant of z into the
first_half_slicer = empty_slicer(z_cache)
first_half_slicer[col_dim] = slice(0, half_n)
z_cache[first_half_slicer] = quadrant_3
# Get the fourth quadrant of z
quadrant_4 = slice_tensor(z, half_n, None, row_dim)
quadrant_4 = slice_tensor(quadrant_4, half_n, None, col_dim)
# Insert said quadrant into the rotated z-cache
quadrant_3_slicer = empty_slicer(z_cache)
quadrant_3_slicer[col_dim] = slice(half_n, None)
z_cache[quadrant_3_slicer] = quadrant_4
return z_cache
# Initialize the z cache to the left half of z.
z_cache_shape = list(z.shape)
z_cache_shape[col_dim] = half_n
z_cache = z.new_zeros(z_cache_shape)
z_cache_slicer = empty_slicer(z_cache)
z_cache_slicer[col_dim] = slice(0, half_n)
z_cache.copy_(z[z_cache_slicer])
z_cache_rotated = False
# We need to reorient the z-cache at the halfway point, and we
# don't want a single chunk to straddle that point. We contract one
# of the chunks in the middle to address that problem.
i_range = list(range(0, half_n, inplace_chunk_size))
initial_offsets = [i_2 - i_1 for i_1, i_2 in zip(i_range, i_range[1:] + [half_n])]
after_half = list(range(half_n, n, inplace_chunk_size))
after_half_offsets = [inplace_chunk_size for _ in after_half]
combined_range_with_offsets = zip(i_range + after_half, initial_offsets + after_half_offsets)
for i, offset in combined_range_with_offsets:
if not z_cache_rotated and i >= half_n:
z_cache = flip_z_cache_(z_cache, z)
z_cache_rotated = True
z_chunk_b = slice_tensor(z, i, i + offset, b_chunk_dim)
mask_chunk = slice_tensor(mask, i, i + offset, b_chunk_dim)
z_chunk_b = z_chunk_b.clone()
if b_chunk_dim == col_dim:
z_chunk_b = slice_tensor(z, i, i + offset, col_dim)
else: # b_chunk_dim == row_dim
# In this case, the b-dimension (b_chunk_dim) is partially
# overwritten at the end of each iteration. We need to
# restore the missing component from the z-cache.
if not z_cache_rotated:
z_chunk_slicer = empty_slicer(z_chunk_b)
z_chunk_slicer[col_dim] = slice(0, half_n)
z_chunk_b[z_chunk_slicer] = slice_tensor(z_cache, i, i + offset, row_dim)
else:
z_cache_offset = i - half_n
z_chunk_b = slice_tensor(z_cache, z_cache_offset, z_cache_offset + offset, row_dim)
b_chunk = compute_projection(z_chunk_b, mask_chunk, a=False, chunked=False)
del z_chunk_b
x_chunk = torch.matmul(a, b_chunk)
x_chunk = permute_final_dims(x_chunk, (1, 2, 0))
x_chunk = self.layer_norm_out(x_chunk)
x_chunk = self.linear_z(x_chunk)
# The g dimension (col_dim) is parallel to and ahead of the
# overwrites in z. We can extract the g chunk normally.
z_chunk_g = slice_tensor(z, i, i + offset, col_dim)
g_chunk = self.linear_g(self.layer_norm_in(z_chunk_g))
g_chunk.sigmoid_()
del z_chunk_g
x_chunk *= g_chunk
# Write the columns into z in-place
z_slicer = empty_slicer(z)
z_slicer[col_dim] = slice(i, i + offset)
if with_add:
z[z_slicer] += x_chunk
else:
z[z_slicer] = x_chunk
else:
b = compute_projection(z, mask, False, False)
x = torch.matmul(a, b)
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.linear_g(z)
g.sigmoid_()
x *= g
if with_add:
z += x
else:
z = x
return z
def forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_safe: bool = False,
_add_with_inplace: bool = False,
_inplace_chunk_size: Optional[int] = 256,
) -> torch.Tensor:
"""
Args:
x:
[*, N_res, N_res, C_z] input tensor
mask:
[*, N_res, N_res] input mask
Returns:
[*, N_res, N_res, C_z] output tensor
"""
if inplace_safe:
x = self._inference_forward(
z,
mask,
inplace_chunk_size=_inplace_chunk_size,
with_add=_add_with_inplace,
)
return x
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
z = self.layer_norm_in(z)
a = mask
a = a * self.sigmoid(self.linear_a_g(z))
a = a * self.linear_a_p(z)
b = mask
b = b * self.sigmoid(self.linear_b_g(z))
b = b * self.linear_b_p(z)
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
x = self._combine_projections(a.float(), b.float())
else:
x = self._combine_projections(a, b)
del a, b
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.sigmoid(self.linear_g(z))
x = x * g
return x
class EsmFoldPreTrainedModel(EsmPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
# Subclass `EsMPreTrainedModel` to deal with special init
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, EsmFoldLinear):
with torch.no_grad():
if module.init_fn is not None:
module.init_fn(module.weight, module.bias)
elif module.init == "default":
trunc_normal_init_(module.weight, scale=1.0)
elif module.init == "relu":
trunc_normal_init_(module.weight, scale=2.0)
elif module.init == "glorot":
nn.init.xavier_uniform_(module.weight, gain=1)
elif module.init == "gating":
module.weight.fill_(0.0)
if module.bias:
module.bias.fill_(1.0)
elif module.init == "normal":
torch.nn.init.kaiming_normal_(module.weight, nonlinearity="linear")
elif module.init == "final":
module.weight.fill_(0.0)
elif isinstance(module, EsmFoldInvariantPointAttention):
ipa_point_weights_init_(module.head_weights)
elif isinstance(module, EsmFoldTriangularSelfAttentionBlock):
torch.nn.init.zeros_(module.tri_mul_in.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_in.linear_z.bias)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.bias)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.bias)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.bias)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.weight)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.bias)
torch.nn.init.zeros_(module.pair_to_sequence.linear.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.bias)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].bias)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].bias)
else:
super()._init_weights(module)
class EsmFoldSelfAttention(nn.Module):
def __init__(self, embed_dim, num_heads, head_width, gated=False):
super().__init__()
assert embed_dim == num_heads * head_width
self.embed_dim = embed_dim
self.num_heads = num_heads
self.head_width = head_width
self.proj = nn.Linear(embed_dim, embed_dim * 3, bias=False)
self.o_proj = nn.Linear(embed_dim, embed_dim, bias=True)
self.gated = gated
if gated:
self.g_proj = nn.Linear(embed_dim, embed_dim)
torch.nn.init.zeros_(self.g_proj.weight)
torch.nn.init.ones_(self.g_proj.bias)
self.rescale_factor = self.head_width**-0.5
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, x, mask=None, bias=None, indices=None):
"""
Basic self attention with optional mask and external pairwise bias. To handle sequences of different lengths,
use mask.
Inputs:
x: batch of input sequneces (.. x L x C) mask: batch of boolean masks where 1=valid, 0=padding position (..
x L_k) bias: batch of scalar pairwise attention biases (.. x Lq x Lk x num_heads)
Outputs:
sequence projection (B x L x embed_dim), attention maps (B x L x L x num_heads)
"""
t = self.proj(x).view(*x.shape[:2], self.num_heads, -1)
t = t.permute(0, 2, 1, 3)
q, k, v = t.chunk(3, dim=-1)
q = self.rescale_factor * q
a = torch.einsum("...qc,...kc->...qk", q, k)
# Add external attention bias.
if bias is not None:
a = a + bias.permute(0, 3, 1, 2)
# Do not attend to padding tokens.
if mask is not None:
mask = mask[:, None, None]
a = a.masked_fill(mask == False, -np.inf) # noqa: E712
a = nn.functional.softmax(a, dim=-1)
y = torch.einsum("...hqk,...hkc->...qhc", a, v)
y = y.reshape(*y.shape[:2], -1)
if self.gated:
y = self.g_proj(x).sigmoid() * y
y = self.o_proj(y)
return y, a.permute(0, 3, 1, 2)
class EsmFoldDropout(nn.Module):
"""
Implementation of dropout with the ability to share the dropout mask along a particular dimension.
"""
def __init__(self, r: float, batch_dim: Union[int, List[int]]):
super().__init__()
self.r = r
if isinstance(batch_dim, int):
batch_dim = [batch_dim]
self.batch_dim = batch_dim
self.dropout = nn.Dropout(self.r)
def forward(self, x: torch.Tensor) -> torch.Tensor:
shape = list(x.shape)
if self.batch_dim is not None:
for bd in self.batch_dim:
shape[bd] = 1
return x * self.dropout(x.new_ones(shape))
class EsmFoldSequenceToPair(nn.Module):
def __init__(self, sequence_state_dim, inner_dim, pairwise_state_dim):
super().__init__()
self.layernorm = nn.LayerNorm(sequence_state_dim)
self.proj = nn.Linear(sequence_state_dim, inner_dim * 2, bias=True)
self.o_proj = nn.Linear(2 * inner_dim, pairwise_state_dim, bias=True)
torch.nn.init.zeros_(self.proj.bias)
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, sequence_state):
"""
Inputs:
sequence_state: B x L x sequence_state_dim
Output:
pairwise_state: B x L x L x pairwise_state_dim
Intermediate state:
B x L x L x 2*inner_dim
"""
assert len(sequence_state.shape) == 3
s = self.layernorm(sequence_state)
s = self.proj(s)
q, k = s.chunk(2, dim=-1)
prod = q[:, None, :, :] * k[:, :, None, :]
diff = q[:, None, :, :] - k[:, :, None, :]
x = torch.cat([prod, diff], dim=-1)
x = self.o_proj(x)
return x
class EsmFoldPairToSequence(nn.Module):
def __init__(self, pairwise_state_dim, num_heads):
super().__init__()
self.layernorm = nn.LayerNorm(pairwise_state_dim)
self.linear = nn.Linear(pairwise_state_dim, num_heads, bias=False)
def forward(self, pairwise_state):
"""
Inputs:
pairwise_state: B x L x L x pairwise_state_dim
Output:
pairwise_bias: B x L x L x num_heads
"""
assert len(pairwise_state.shape) == 4
z = self.layernorm(pairwise_state)
pairwise_bias = self.linear(z)
return pairwise_bias
class EsmFoldResidueMLP(nn.Module):
def __init__(self, embed_dim, inner_dim, dropout=0):
super().__init__()
self.mlp = nn.Sequential(
nn.LayerNorm(embed_dim),
nn.Linear(embed_dim, inner_dim),
nn.ReLU(),
nn.Linear(inner_dim, embed_dim),
nn.Dropout(dropout),
)
def forward(self, x):
return x + self.mlp(x)
class EsmFoldTriangularSelfAttentionBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
sequence_state_dim = config.sequence_state_dim
pairwise_state_dim = config.pairwise_state_dim
sequence_num_heads = sequence_state_dim // config.sequence_head_width
pairwise_num_heads = pairwise_state_dim // config.pairwise_head_width
self.layernorm_1 = nn.LayerNorm(sequence_state_dim)
self.sequence_to_pair = EsmFoldSequenceToPair(sequence_state_dim, pairwise_state_dim // 2, pairwise_state_dim)
self.pair_to_sequence = EsmFoldPairToSequence(pairwise_state_dim, sequence_num_heads)
self.seq_attention = EsmFoldSelfAttention(
sequence_state_dim, sequence_num_heads, config.sequence_head_width, gated=True
)
self.tri_mul_out = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=True)
self.tri_mul_in = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=False)
self.tri_att_start = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=True
)
self.tri_att_end = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=False
)
self.mlp_seq = EsmFoldResidueMLP(sequence_state_dim, 4 * sequence_state_dim, dropout=config.dropout)
self.mlp_pair = EsmFoldResidueMLP(pairwise_state_dim, 4 * pairwise_state_dim, dropout=config.dropout)
self.drop = nn.Dropout(config.dropout)
self.row_drop = EsmFoldDropout(config.dropout * 2, 2)
self.col_drop = EsmFoldDropout(config.dropout * 2, 1)
def forward(self, sequence_state, pairwise_state, mask=None, chunk_size=None, **__kwargs):
"""
Inputs:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim mask: B x L boolean
tensor of valid positions
Output:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim
"""
if len(sequence_state.shape) != 3:
raise ValueError(f"`sequence_state` should be a 3d-tensor, got {len(sequence_state.shape)} dims.")
if len(pairwise_state.shape) != 4:
raise ValueError(f"`pairwise_state` should be a 4d-tensor, got {len(pairwise_state.shape)} dims.")
if mask is not None and len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim, sequence_state_dim = sequence_state.shape
pairwise_state_dim = pairwise_state.shape[3]
if sequence_state_dim != self.config.sequence_state_dim:
raise ValueError(
"`sequence_state` last dimension should be equal to `self.sequence_state_dim`. Got "
f"{sequence_state_dim} != {self.config.sequence_state_dim}."
)
if pairwise_state_dim != self.config.pairwise_state_dim:
raise ValueError(
"`pairwise_state` last dimension should be equal to `self.pairwise_state_dim`. Got "
f"{pairwise_state_dim} != {self.config.pairwise_state_dim}."
)
if batch_dim != pairwise_state.shape[0]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent batch size: {batch_dim} != "
f"{pairwise_state.shape[0]}."
)
if seq_dim != pairwise_state.shape[1] or seq_dim != pairwise_state.shape[2]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent sequence length: {seq_dim} != "
f"{pairwise_state.shape[1]} or {pairwise_state.shape[2]}."
)
# Update sequence state
bias = self.pair_to_sequence(pairwise_state)
# Self attention with bias + mlp.
y = self.layernorm_1(sequence_state)
y, _ = self.seq_attention(y, mask=mask, bias=bias)
sequence_state = sequence_state + self.drop(y)
sequence_state = self.mlp_seq(sequence_state)
# Update pairwise state
pairwise_state = pairwise_state + self.sequence_to_pair(sequence_state)
# Axial attention with triangular bias.
tri_mask = mask.unsqueeze(2) * mask.unsqueeze(1) if mask is not None else None
pairwise_state = pairwise_state + self.row_drop(self.tri_mul_out(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.col_drop(self.tri_mul_in(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.row_drop(
self.tri_att_start(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
pairwise_state = pairwise_state + self.col_drop(
self.tri_att_end(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
# MLP over pairs.
pairwise_state = self.mlp_pair(pairwise_state)
return sequence_state, pairwise_state
class EsmCategoricalMixture:
def __init__(self, param, bins=50, start=0, end=1):
# All tensors are of shape ..., bins.
self.logits = param
bins = torch.linspace(start, end, bins + 1, device=self.logits.device, dtype=self.logits.dtype)
self.v_bins = (bins[:-1] + bins[1:]) / 2
def log_prob(self, true):
# Shapes are:
# self.probs: ... x bins
# true : ...
true_index = (true.unsqueeze(-1) - self.v_bins[[None] * true.ndim]).abs().argmin(-1)
nll = self.logits.log_softmax(-1)
return torch.take_along_dim(nll, true_index.unsqueeze(-1), dim=-1).squeeze(-1)
def mean(self):
return (self.logits.softmax(-1) @ self.v_bins.unsqueeze(1)).squeeze(-1)
def categorical_lddt(logits, bins=50):
# Logits are ..., 37, bins.
return EsmCategoricalMixture(logits, bins=bins).mean()
def get_axial_mask(mask):
"""
Helper to convert B x L mask of valid positions to axial mask used in row column attentions.
Input:
mask: B x L tensor of booleans
Output:
mask: B x L x L tensor of booleans
"""
if mask is None:
return None
if len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim = mask.shape
m = mask.unsqueeze(1).expand(batch_dim, seq_dim, seq_dim)
m = m.reshape(batch_dim * seq_dim, seq_dim)
return m
class EsmFoldRelativePosition(nn.Module):
def __init__(self, config):
super().__init__()
self.bins = config.position_bins
# Note an additional offset is used so that the 0th position
# is reserved for masked pairs.
self.embedding = torch.nn.Embedding(2 * self.bins + 2, config.pairwise_state_dim)
def forward(self, residue_index, mask=None):
"""
Input:
residue_index: B x L tensor of indices (dtype=torch.long) mask: B x L tensor of booleans
Output:
pairwise_state: B x L x L x pairwise_state_dim tensor of embeddings
"""
if residue_index.dtype != torch.long:
raise ValueError(f"`residue_index` has dtype {residue_index.dtype}, it should be `torch.long`.")
if mask is not None and residue_index.shape != mask.shape:
raise ValueError(
f"`residue_index` and `mask` have inconsistent shapes: {residue_index.shape} != {mask.shape}."
)
diff = residue_index[:, None, :] - residue_index[:, :, None]
diff = diff.clamp(-self.bins, self.bins)
diff = diff + self.bins + 1 # Add 1 to adjust for padding index.
if mask is not None:
mask = mask[:, None, :] * mask[:, :, None]
diff[mask == False] = 0 # noqa: E712
output = self.embedding(diff)
return output
class EsmFoldAngleResnetBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="final")
self.relu = nn.ReLU()
def forward(self, a: torch.Tensor) -> torch.Tensor:
s_initial = a
a = self.relu(a)
a = self.linear_1(a)
a = self.relu(a)
a = self.linear_2(a)
return a + s_initial
class EsmFoldAngleResnet(nn.Module):
"""
Implements Algorithm 20, lines 11-14
"""
def __init__(self, config):
super().__init__()
self.config = config
self.linear_in = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.linear_initial = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.layers = nn.ModuleList()
for _ in range(config.num_resnet_blocks):
layer = EsmFoldAngleResnetBlock(config)
self.layers.append(layer)
self.linear_out = EsmFoldLinear(config.resnet_dim, config.num_angles * 2)
self.relu = nn.ReLU()
def forward(self, s: torch.Tensor, s_initial: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
s:
[*, C_hidden] single embedding
s_initial:
[*, C_hidden] single embedding as of the start of the StructureModule
Returns:
[*, no_angles, 2] predicted angles
"""
# NOTE: The ReLU's applied to the inputs are absent from the supplement
# pseudocode but present in the source. For maximal compatibility with
# the pretrained weights, I'm going with the source.
# [*, C_hidden]
s_initial = self.relu(s_initial)
s_initial = self.linear_initial(s_initial)
s = self.relu(s)
s = self.linear_in(s)
s = s + s_initial
for l in self.layers:
s = l(s)
s = self.relu(s)
# [*, no_angles * 2]
s = self.linear_out(s)
# [*, no_angles, 2]
s = s.view(s.shape[:-1] + (-1, 2))
unnormalized_s = s
norm_denom = torch.sqrt(
torch.clamp(
torch.sum(s**2, dim=-1, keepdim=True),
min=self.config.epsilon,
)
)
s = s / norm_denom
return unnormalized_s, s
class EsmFoldInvariantPointAttention(nn.Module):
"""
Implements Algorithm 22.
"""
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_dim
c_z = config.pairwise_dim
self.hidden_dim = config.ipa_dim
self.num_heads = config.num_heads_ipa
self.num_qk_points = config.num_qk_points
self.num_v_points = config.num_v_points
# These linear layers differ from their specifications in the
# supplement. There, they lack bias and use Glorot initialization.
# Here as in the official source, they have bias and use the default
# Lecun initialization.
hc = config.ipa_dim * config.num_heads_ipa
self.linear_q = EsmFoldLinear(c_s, hc)
self.linear_kv = EsmFoldLinear(c_s, 2 * hc)
hpq = config.num_heads_ipa * config.num_qk_points * 3
self.linear_q_points = EsmFoldLinear(c_s, hpq)
hpkv = config.num_heads_ipa * (config.num_qk_points + config.num_v_points) * 3
self.linear_kv_points = EsmFoldLinear(c_s, hpkv)
self.linear_b = EsmFoldLinear(c_z, config.num_heads_ipa)
self.head_weights = nn.Parameter(torch.zeros((config.num_heads_ipa)))
concat_out_dim = config.num_heads_ipa * (c_z + config.ipa_dim + config.num_v_points * 4)
self.linear_out = EsmFoldLinear(concat_out_dim, c_s, init="final")
self.softmax = nn.Softmax(dim=-1)
self.softplus = nn.Softplus()
def forward(
self,
s: torch.Tensor,
z: Optional[torch.Tensor],
r: Rigid,
mask: torch.Tensor,
_offload_inference: bool = False,
_z_reference_list: Optional[Sequence[torch.Tensor]] = None,
) -> torch.Tensor:
"""
Args:
s:
[*, N_res, C_s] single representation
z:
[*, N_res, N_res, C_z] pair representation
r:
[*, N_res] transformation object
mask:
[*, N_res] mask
Returns:
[*, N_res, C_s] single representation update
"""
z = [z]
#######################################
# Generate scalar and point activations
#######################################
# [*, N_res, H * C_hidden]
q = self.linear_q(s)
kv = self.linear_kv(s)
# [*, N_res, H, C_hidden]
q = q.view(q.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, 2 * C_hidden]
kv = kv.view(kv.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, C_hidden]
k, v = torch.split(kv, self.hidden_dim, dim=-1)
# [*, N_res, H * P_q * 3]
q_pts = self.linear_q_points(s)
# This is kind of clunky, but it's how the original does it
# [*, N_res, H * P_q, 3]
q_pts = torch.split(q_pts, q_pts.shape[-1] // 3, dim=-1)
q_pts = torch.stack(q_pts, dim=-1)
q_pts = r[..., None].apply(q_pts)
# [*, N_res, H, P_q, 3]
q_pts = q_pts.view(q_pts.shape[:-2] + (self.num_heads, self.num_qk_points, 3))
# [*, N_res, H * (P_q + P_v) * 3]
kv_pts = self.linear_kv_points(s)
# [*, N_res, H * (P_q + P_v), 3]
kv_pts = torch.split(kv_pts, kv_pts.shape[-1] // 3, dim=-1)
kv_pts = torch.stack(kv_pts, dim=-1)
kv_pts = r[..., None].apply(kv_pts)
# [*, N_res, H, (P_q + P_v), 3]
kv_pts = kv_pts.view(kv_pts.shape[:-2] + (self.num_heads, -1, 3))
# [*, N_res, H, P_q/P_v, 3]
k_pts, v_pts = torch.split(kv_pts, [self.num_qk_points, self.num_v_points], dim=-2)
##########################
# Compute attention scores
##########################
# [*, N_res, N_res, H]
b = self.linear_b(z[0])
if _offload_inference:
assert sys.getrefcount(z[0]) == 2
z[0] = z[0].cpu()
# [*, H, N_res, N_res]
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
a = torch.matmul(
permute_final_dims(q.float(), (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k.float(), (1, 2, 0)), # [*, H, C_hidden, N_res]
)
else:
a = torch.matmul(
permute_final_dims(q, (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k, (1, 2, 0)), # [*, H, C_hidden, N_res]
)
a *= math.sqrt(1.0 / (3 * self.hidden_dim))
a += math.sqrt(1.0 / 3) * permute_final_dims(b, (2, 0, 1))
# [*, N_res, N_res, H, P_q, 3]
pt_att = q_pts.unsqueeze(-4) - k_pts.unsqueeze(-5)
pt_att = pt_att**2
# [*, N_res, N_res, H, P_q]
pt_att = sum(torch.unbind(pt_att, dim=-1))
head_weights = self.softplus(self.head_weights).view(*((1,) * len(pt_att.shape[:-2]) + (-1, 1)))
head_weights = head_weights * math.sqrt(1.0 / (3 * (self.num_qk_points * 9.0 / 2)))
pt_att = pt_att * head_weights
# [*, N_res, N_res, H]
pt_att = torch.sum(pt_att, dim=-1) * (-0.5)
# [*, N_res, N_res]
square_mask = mask.unsqueeze(-1) * mask.unsqueeze(-2)
square_mask = self.config.inf * (square_mask - 1)
# [*, H, N_res, N_res]
pt_att = permute_final_dims(pt_att, (2, 0, 1))
a = a + pt_att
a = a + square_mask.unsqueeze(-3)
a = self.softmax(a)
################
# Compute output
################
# [*, N_res, H, C_hidden]
o = torch.matmul(a, v.transpose(-2, -3).to(dtype=a.dtype)).transpose(-2, -3)
# [*, N_res, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, H, 3, N_res, P_v]
o_pt = torch.sum(
(a[..., None, :, :, None] * permute_final_dims(v_pts, (1, 3, 0, 2))[..., None, :, :]),
dim=-2,
)
# [*, N_res, H, P_v, 3]
o_pt = permute_final_dims(o_pt, (2, 0, 3, 1))
o_pt = r[..., None, None].invert_apply(o_pt)
# [*, N_res, H * P_v]
o_pt_norm = flatten_final_dims(torch.sqrt(torch.sum(o_pt**2, dim=-1) + self.config.epsilon), 2)
# [*, N_res, H * P_v, 3]
o_pt = o_pt.reshape(*o_pt.shape[:-3], -1, 3)
if _offload_inference:
z[0] = z[0].to(o_pt.device)
# [*, N_res, H, C_z]
o_pair = torch.matmul(a.transpose(-2, -3), z[0].to(dtype=a.dtype))
# [*, N_res, H * C_z]
o_pair = flatten_final_dims(o_pair, 2)
# [*, N_res, C_s]
s = self.linear_out(
torch.cat((o, *torch.unbind(o_pt, dim=-1), o_pt_norm, o_pair), dim=-1).to(dtype=z[0].dtype)
)
return s
class EsmFoldBackboneUpdate(nn.Module):
"""
Implements part of Algorithm 23.
"""
def __init__(self, config):
super().__init__()
self.linear = EsmFoldLinear(config.sequence_dim, 6, init="final")
def forward(self, s: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
[*, N_res, C_s] single representation
Returns:
[*, N_res, 6] update vector
"""
# [*, 6]
update = self.linear(s)
return update
class EsmFoldStructureModuleTransitionLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_3 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="final")
self.relu = nn.ReLU()
def forward(self, s):
s_initial = s
s = self.linear_1(s)
s = self.relu(s)
s = self.linear_2(s)
s = self.relu(s)
s = self.linear_3(s)
s = s + s_initial
return s
class EsmFoldStructureModuleTransition(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layers = nn.ModuleList()
for _ in range(config.num_transition_layers):
l = EsmFoldStructureModuleTransitionLayer(config)
self.layers.append(l)
self.dropout = nn.Dropout(config.dropout_rate)
self.layer_norm = LayerNorm(config.sequence_dim)
def forward(self, s):
for l in self.layers:
s = l(s)
s = self.dropout(s)
s = self.layer_norm(s)
return s
class EsmFoldStructureModule(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
# Buffers to be lazily initialized later
# self.default_frames
# self.group_idx
# self.atom_mask
# self.lit_positions
self.layer_norm_s = LayerNorm(config.sequence_dim)
self.layer_norm_z = LayerNorm(config.pairwise_dim)
self.linear_in = EsmFoldLinear(config.sequence_dim, config.sequence_dim)
self.ipa = EsmFoldInvariantPointAttention(config)
self.ipa_dropout = nn.Dropout(config.dropout_rate)
self.layer_norm_ipa = LayerNorm(config.sequence_dim)
self.transition = EsmFoldStructureModuleTransition(config)
self.bb_update = EsmFoldBackboneUpdate(config)
self.angle_resnet = EsmFoldAngleResnet(config)
def forward(
self,
evoformer_output_dict,
aatype,
mask=None,
_offload_inference=False,
):
"""
Args:
evoformer_output_dict:
Dictionary containing:
"single":
[*, N_res, C_s] single representation
"pair":
[*, N_res, N_res, C_z] pair representation
aatype:
[*, N_res] amino acid indices
mask:
Optional [*, N_res] sequence mask
Returns:
A dictionary of outputs
"""
s = evoformer_output_dict["single"]
if mask is None:
# [*, N]
mask = s.new_ones(s.shape[:-1])
# [*, N, C_s]
s = self.layer_norm_s(s)
# [*, N, N, C_z]
z = self.layer_norm_z(evoformer_output_dict["pair"])
z_reference_list = None
if _offload_inference:
assert sys.getrefcount(evoformer_output_dict["pair"]) == 2
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].cpu()
z_reference_list = [z]
z = None
# [*, N, C_s]
s_initial = s
s = self.linear_in(s)
# [*, N]
rigids = Rigid.identity(
s.shape[:-1],
s.dtype,
s.device,
self.training,
fmt="quat",
)
outputs = []
for i in range(self.config.num_blocks):
# [*, N, C_s]
s = s + self.ipa(
s,
z,
rigids,
mask,
_offload_inference=_offload_inference,
_z_reference_list=z_reference_list,
)
s = self.ipa_dropout(s)
s = self.layer_norm_ipa(s)
s = self.transition(s)
# [*, N]
rigids = rigids.compose_q_update_vec(self.bb_update(s))
# To hew as closely as possible to AlphaFold, we convert our
# quaternion-based transformations to rotation-matrix ones
# here
backb_to_global = Rigid(
Rotation(rot_mats=rigids.get_rots().get_rot_mats(), quats=None),
rigids.get_trans(),
)
backb_to_global = backb_to_global.scale_translation(self.config.trans_scale_factor)
# [*, N, 7, 2]
unnormalized_angles, angles = self.angle_resnet(s, s_initial)
all_frames_to_global = self.torsion_angles_to_frames(backb_to_global, angles, aatype)
pred_xyz = self.frames_and_literature_positions_to_atom14_pos(all_frames_to_global, aatype)
scaled_rigids = rigids.scale_translation(self.config.trans_scale_factor)
preds = {
"frames": scaled_rigids.to_tensor_7(),
"sidechain_frames": all_frames_to_global.to_tensor_4x4(),
"unnormalized_angles": unnormalized_angles,
"angles": angles,
"positions": pred_xyz,
"states": s,
}
outputs.append(preds)
rigids = rigids.stop_rot_gradient()
del z, z_reference_list
if _offload_inference:
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].to(s.device)
outputs = dict_multimap(torch.stack, outputs)
outputs["single"] = s
return outputs
def _init_residue_constants(self, float_dtype, device):
if not hasattr(self, "default_frames"):
self.register_buffer(
"default_frames",
torch.tensor(
residue_constants.restype_rigid_group_default_frame,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "group_idx"):
self.register_buffer(
"group_idx",
torch.tensor(
residue_constants.restype_atom14_to_rigid_group,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "atom_mask"):
self.register_buffer(
"atom_mask",
torch.tensor(
residue_constants.restype_atom14_mask,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "lit_positions"):
self.register_buffer(
"lit_positions",
torch.tensor(
residue_constants.restype_atom14_rigid_group_positions,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
def torsion_angles_to_frames(self, r, alpha, f):
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(alpha.dtype, alpha.device)
# Separated purely to make testing less annoying
return torsion_angles_to_frames(r, alpha, f, self.default_frames)
def frames_and_literature_positions_to_atom14_pos(self, r, f): # [*, N, 8] # [*, N]
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(r.get_rots().dtype, r.get_rots().device)
return frames_and_literature_positions_to_atom14_pos(
r,
f,
self.default_frames,
self.group_idx,
self.atom_mask,
self.lit_positions,
)
class EsmFoldingTrunk(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_state_dim
c_z = config.pairwise_state_dim
self.pairwise_positional_embedding = EsmFoldRelativePosition(config)
self.blocks = nn.ModuleList([EsmFoldTriangularSelfAttentionBlock(config) for _ in range(config.num_blocks)])
self.recycle_bins = 15
self.recycle_s_norm = nn.LayerNorm(c_s)
self.recycle_z_norm = nn.LayerNorm(c_z)
self.recycle_disto = nn.Embedding(self.recycle_bins, c_z)
self.recycle_disto.weight[0].detach().zero_()
self.structure_module = EsmFoldStructureModule(config.structure_module)
self.trunk2sm_s = nn.Linear(c_s, config.structure_module.sequence_dim)
self.trunk2sm_z = nn.Linear(c_z, config.structure_module.pairwise_dim)
self.chunk_size = config.chunk_size
def set_chunk_size(self, chunk_size):
# This parameter means the axial attention will be computed
# in a chunked manner. This should make the memory used more or less O(L) instead of O(L^2).
# It's equivalent to running a for loop over chunks of the dimension we're iterative over,
# where the chunk_size is the size of the chunks, so 128 would mean to parse 128-length chunks.
self.chunk_size = chunk_size
def forward(self, seq_feats, pair_feats, true_aa, residx, mask, no_recycles):
"""
Inputs:
seq_feats: B x L x C tensor of sequence features pair_feats: B x L x L x C tensor of pair features residx: B
x L long tensor giving the position in the sequence mask: B x L boolean tensor indicating valid residues
Output:
predicted_structure: B x L x (num_atoms_per_residue * 3) tensor wrapped in a Coordinates object
"""
device = seq_feats.device
s_s_0 = seq_feats
s_z_0 = pair_feats
if no_recycles is None:
no_recycles = self.config.max_recycles
else:
if no_recycles < 0:
raise ValueError("Number of recycles must not be negative.")
no_recycles += 1 # First 'recycle' is just the standard forward pass through the model.
def trunk_iter(s, z, residx, mask):
z = z + self.pairwise_positional_embedding(residx, mask=mask)
for block in self.blocks:
s, z = block(s, z, mask=mask, residue_index=residx, chunk_size=self.chunk_size)
return s, z
s_s = s_s_0
s_z = s_z_0
recycle_s = torch.zeros_like(s_s)
recycle_z = torch.zeros_like(s_z)
recycle_bins = torch.zeros(*s_z.shape[:-1], device=device, dtype=torch.int64)
for recycle_idx in range(no_recycles):
with ContextManagers([] if recycle_idx == no_recycles - 1 else [torch.no_grad()]):
# === Recycling ===
recycle_s = self.recycle_s_norm(recycle_s.detach()).to(device)
recycle_z = self.recycle_z_norm(recycle_z.detach()).to(device)
recycle_z += self.recycle_disto(recycle_bins.detach()).to(device)
s_s, s_z = trunk_iter(s_s_0 + recycle_s, s_z_0 + recycle_z, residx, mask)
# === Structure module ===
structure = self.structure_module(
{"single": self.trunk2sm_s(s_s), "pair": self.trunk2sm_z(s_z)},
true_aa,
mask.float(),
)
recycle_s = s_s
recycle_z = s_z
# Distogram needs the N, CA, C coordinates, and bin constants same as alphafold.
recycle_bins = EsmFoldingTrunk.distogram(
structure["positions"][-1][:, :, :3],
3.375,
21.375,
self.recycle_bins,
)
structure["s_s"] = s_s
structure["s_z"] = s_z
return structure
@staticmethod
def distogram(coords, min_bin, max_bin, num_bins):
# Coords are [... L x 3 x 3], where it's [N, CA, C] x 3 coordinates.
boundaries = torch.linspace(
min_bin,
max_bin,
num_bins - 1,
device=coords.device,
)
boundaries = boundaries**2
N, CA, C = [x.squeeze(-2) for x in coords.chunk(3, dim=-2)]
# Infer CB coordinates.
b = CA - N
c = C - CA
a = b.cross(c, dim=-1)
CB = -0.58273431 * a + 0.56802827 * b - 0.54067466 * c + CA
dists = (CB[..., None, :, :] - CB[..., :, None, :]).pow(2).sum(dim=-1, keepdims=True)
bins = torch.sum(dists > boundaries, dim=-1) # [..., L, L]
return bins
# TODO Add information to the docstring about any methods that convert to PDB format, or otherwise prepare
# the outputs for downstream use.
@add_start_docstrings(
"""
ESMForProteinFolding is the HuggingFace port of the original ESMFold model. It consists of an ESM-2 "stem" followed
by a protein folding "head", although unlike most other output heads, this "head" is similar in size and runtime to
the rest of the model combined! It outputs a dictionary containing predicted structural information about the input
protein(s).
""",
ESM_START_DOCSTRING,
)
class EsmForProteinFolding(EsmPreTrainedModel):
_no_split_modules = ["EsmFoldStructureModule", "EsmFoldTriangularSelfAttentionBlock"]
def __init__(self, config):
super().__init__(config)
self.config = config
self.distogram_bins = 64
self.esm = EsmModel(config, add_pooling_layer=False)
self.esm.requires_grad_(False)
if self.config.esmfold_config.fp16_esm:
self.esm.half()
self.esm_feats = self.config.hidden_size
self.esm_attns = self.config.num_hidden_layers * self.config.num_attention_heads
self.esm_layers = self.config.num_hidden_layers
self.register_buffer("af2_to_esm", self._af2_to_esm_from_vocab_list(config.vocab_list))
self.esm_s_combine = nn.Parameter(torch.zeros(self.esm_layers + 1))
trunk_config = self.config.esmfold_config.trunk
c_s = trunk_config.sequence_state_dim
c_z = trunk_config.pairwise_state_dim
self.esm_s_mlp = nn.Sequential(
LayerNorm(self.esm_feats),
nn.Linear(self.esm_feats, c_s),
nn.ReLU(),
nn.Linear(c_s, c_s),
)
# 0 is padding, N is unknown residues, N + 1 is mask.
self.n_tokens_embed = residue_constants.restype_num + 3
self.pad_idx = 0
self.unk_idx = self.n_tokens_embed - 2
self.mask_idx = self.n_tokens_embed - 1
self.esm_dict_cls_idx = self.config.vocab_list.index("<cls>")
self.esm_dict_mask_idx = self.config.vocab_list.index("<mask>")
self.esm_dict_eos_idx = self.config.vocab_list.index("<eos>")
self.esm_dict_padding_idx = self.config.vocab_list.index("<pad>")
if self.config.esmfold_config.embed_aa:
self.embedding = nn.Embedding(self.n_tokens_embed, c_s, padding_idx=0)
self.trunk = EsmFoldingTrunk(trunk_config)
self.distogram_head = nn.Linear(c_z, self.distogram_bins)
self.ptm_head = nn.Linear(c_z, self.distogram_bins)
self.lm_head = nn.Linear(c_s, self.n_tokens_embed)
self.lddt_bins = 50
structure_module_config = trunk_config.structure_module
self.lddt_head = nn.Sequential(
nn.LayerNorm(structure_module_config.sequence_dim),
nn.Linear(structure_module_config.sequence_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, 37 * self.lddt_bins),
)
@staticmethod
def _af2_to_esm_from_vocab_list(vocab_list: List[str]) -> torch.Tensor:
# Remember that t is shifted from residue_constants by 1 (0 is padding).
esm_reorder = [vocab_list.index("<pad>")] + [vocab_list.index(v) for v in residue_constants.restypes_with_x]
return torch.tensor(esm_reorder)
@add_start_docstrings_to_model_forward(ESMFOLD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=EsmForProteinFoldingOutput, config_class=EsmConfig)
def forward(
self,
input_ids: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
masking_pattern: Optional[torch.Tensor] = None,
num_recycles: Optional[int] = None,
) -> EsmForProteinFoldingOutput:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, EsmForProteinFolding
>>> model = EsmForProteinFolding.from_pretrained("facebook/esmfold_v1")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/esmfold_v1")
>>> inputs = tokenizer(["MLKNVQVQLV"], return_tensors="pt", add_special_tokens=False) # A tiny random peptide
>>> outputs = model(**inputs)
>>> folded_positions = outputs.positions
```
"""
cfg = self.config.esmfold_config
aa = input_ids # B x L
B = aa.shape[0]
L = aa.shape[1]
device = input_ids.device
if attention_mask is None:
attention_mask = torch.ones_like(aa, device=device)
if position_ids is None:
position_ids = torch.arange(L, device=device).expand_as(input_ids)
# === ESM ===
esmaa = self.af2_idx_to_esm_idx(aa, attention_mask)
if masking_pattern is not None:
masked_aa, esmaa, mlm_targets = self.bert_mask(aa, esmaa, attention_mask, masking_pattern)
else:
masked_aa = aa
mlm_targets = None
# We get sequence and pair representations from whatever version of ESM /
# configuration we are using. The sequence representation esm_s is always
# present. The pair embedding esm_z may be present depending on the
# configuration of the model. If esm_z is not used by the model then it
# is returned as None here.
esm_s = self.compute_language_model_representations(esmaa)
# Convert esm_s and esm_z, if present, to the precision used by the trunk and
# the structure module. These tensors may be a lower precision if, for example,
# we're running the language model in fp16 precision.
esm_s = esm_s.to(self.esm_s_combine.dtype)
if cfg.esm_ablate_sequence:
esm_s = esm_s * 0
esm_s = esm_s.detach()
# === preprocessing ===
esm_s = (self.esm_s_combine.softmax(0).unsqueeze(0) @ esm_s).squeeze(2)
s_s_0 = self.esm_s_mlp(esm_s)
s_z_0 = s_s_0.new_zeros(B, L, L, cfg.trunk.pairwise_state_dim)
if self.config.esmfold_config.embed_aa:
s_s_0 += self.embedding(masked_aa)
structure: dict = self.trunk(s_s_0, s_z_0, aa, position_ids, attention_mask, no_recycles=num_recycles)
# Documenting what we expect:
structure = {
k: v
for k, v in structure.items()
if k
in [
"s_z",
"s_s",
"frames",
"sidechain_frames",
"unnormalized_angles",
"angles",
"positions",
"states",
]
}
# Add BERT mask for the loss to use, if available.
if mlm_targets:
structure["mlm_targets"] = mlm_targets
disto_logits = self.distogram_head(structure["s_z"])
disto_logits = (disto_logits + disto_logits.transpose(1, 2)) / 2
structure["distogram_logits"] = disto_logits
lm_logits = self.lm_head(structure["s_s"])
structure["lm_logits"] = lm_logits
structure["aatype"] = aa
make_atom14_masks(structure)
# Of course, this doesn't respect the true mask because it doesn't know about it...
# We're not going to properly mask change of index tensors:
# "residx_atom14_to_atom37",
# "residx_atom37_to_atom14",
for k in [
"atom14_atom_exists",
"atom37_atom_exists",
]:
structure[k] *= attention_mask.unsqueeze(-1)
structure["residue_index"] = position_ids
lddt_head = self.lddt_head(structure["states"]).reshape(structure["states"].shape[0], B, L, -1, self.lddt_bins)
structure["lddt_head"] = lddt_head
plddt = categorical_lddt(lddt_head[-1], bins=self.lddt_bins)
structure["plddt"] = plddt
ptm_logits = self.ptm_head(structure["s_z"])
structure["ptm_logits"] = ptm_logits
structure["ptm"] = compute_tm(ptm_logits, max_bin=31, no_bins=self.distogram_bins)
structure.update(compute_predicted_aligned_error(ptm_logits, max_bin=31, no_bins=self.distogram_bins))
return EsmForProteinFoldingOutput(**structure)
def af2_idx_to_esm_idx(self, aa, mask):
# avoid indexing on different devices
if self.af2_to_esm.device != aa.device:
self.af2_to_esm = self.af2_to_esm.to(aa.device)
aa = (aa + 1).masked_fill(mask != 1, 0)
return self.af2_to_esm[aa]
def compute_language_model_representations(self, esmaa: torch.Tensor) -> torch.Tensor:
device = next(self.parameters()).device
B, L = esmaa.shape # B = batch size, L = sequence length.
if self.config.esmfold_config.bypass_lm:
esm_s = torch.zeros(B, L, self.esm_s_combine.size[0], -1, self.esm_feats, device=device)
return esm_s
bosi, eosi = self.esm_dict_cls_idx, self.esm_dict_eos_idx
bos = esmaa.new_full((B, 1), bosi)
eos = esmaa.new_full((B, 1), self.esm_dict_padding_idx)
esmaa = torch.cat([bos, esmaa, eos], dim=1)
# Use the first padding index as eos during inference.
esmaa[range(B), (esmaa != 1).sum(1)] = eosi
# _, esm_z, esm_s = self.esm(esmaa, return_pairs=self.config.esmfold_config.use_esm_attn_map)
# Because we do not support use_esm_attn_map in the HF port as it is not used in any public models,
# esm_z is always None
esm_hidden_states = self.esm(esmaa, attention_mask=esmaa != 1, output_hidden_states=True)["hidden_states"]
esm_s = torch.stack(esm_hidden_states, dim=2)
esm_s = esm_s[:, 1:-1] # B, L, nLayers, C
return esm_s
def bert_mask(self, aa, esmaa, mask, pattern):
new_aa = aa.clone()
target = aa.clone()
new_esmaa = esmaa.clone()
new_aa[pattern == 1] = self.mask_idx
target[pattern != 1] = 0
new_esmaa[pattern == 1] = self.esm_dict_mask_idx
return new_aa, new_esmaa, target
@torch.no_grad()
def infer(
self,
seqs: Union[str, List[str]],
position_ids=None,
):
if isinstance(seqs, str):
lst = [seqs]
else:
lst = seqs
# Returns the raw outputs of the model given an input sequence.
device = next(self.parameters()).device
aatype = collate_dense_tensors(
[
torch.from_numpy(
residue_constants.sequence_to_onehot(
sequence=seq,
mapping=residue_constants.restype_order_with_x,
map_unknown_to_x=True,
)
)
.to(device)
.argmax(dim=1)
for seq in lst
]
) # B=1 x L
mask = collate_dense_tensors([aatype.new_ones(len(seq)) for seq in lst])
position_ids = (
torch.arange(aatype.shape[1], device=device).expand(len(lst), -1)
if position_ids is None
else position_ids.to(device)
)
if position_ids.ndim == 1:
position_ids = position_ids.unsqueeze(0)
return self.forward(
aatype,
mask,
position_ids=position_ids,
)
@staticmethod
def output_to_pdb(output: Dict) -> List[str]:
"""Returns the pbd (file) string from the model given the model output."""
output = {k: v.to("cpu").numpy() for k, v in output.items()}
pdbs = []
final_atom_positions = atom14_to_atom37(output["positions"][-1], output)
final_atom_mask = output["atom37_atom_exists"]
for i in range(output["aatype"].shape[0]):
aa = output["aatype"][i]
pred_pos = final_atom_positions[i]
mask = final_atom_mask[i]
resid = output["residue_index"][i] + 1
pred = OFProtein(
aatype=aa,
atom_positions=pred_pos,
atom_mask=mask,
residue_index=resid,
b_factors=output["plddt"][i],
)
pdbs.append(to_pdb(pred))
return pdbs
def infer_pdb(self, seqs, *args, **kwargs) -> str:
"""Returns the pdb (file) string from the model given an input sequence."""
assert isinstance(seqs, str)
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)[0]
def infer_pdbs(self, seqs: List[str], *args, **kwargs) -> List[str]:
"""Returns the pdb (file) string from the model given an input sequence."""
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/tensor_utils.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from functools import partial
from typing import Any, Callable, Dict, List, Type, TypeVar, Union, overload
import torch
import torch.nn as nn
import torch.types
def add(m1: torch.Tensor, m2: torch.Tensor, inplace: bool) -> torch.Tensor:
# The first operation in a checkpoint can't be in-place, but it's
# nice to have in-place addition during inference. Thus...
if not inplace:
m1 = m1 + m2
else:
m1 += m2
return m1
def permute_final_dims(tensor: torch.Tensor, inds: List[int]) -> torch.Tensor:
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def flatten_final_dims(t: torch.Tensor, no_dims: int) -> torch.Tensor:
return t.reshape(t.shape[:-no_dims] + (-1,))
def masked_mean(mask: torch.Tensor, value: torch.Tensor, dim: int, eps: float = 1e-4) -> torch.Tensor:
mask = mask.expand(*value.shape)
return torch.sum(mask * value, dim=dim) / (eps + torch.sum(mask, dim=dim))
def pts_to_distogram(
pts: torch.Tensor, min_bin: torch.types.Number = 2.3125, max_bin: torch.types.Number = 21.6875, no_bins: int = 64
) -> torch.Tensor:
boundaries = torch.linspace(min_bin, max_bin, no_bins - 1, device=pts.device)
dists = torch.sqrt(torch.sum((pts.unsqueeze(-2) - pts.unsqueeze(-3)) ** 2, dim=-1))
return torch.bucketize(dists, boundaries)
def dict_multimap(fn: Callable[[list], Any], dicts: List[dict]) -> dict:
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if isinstance(v, dict):
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def one_hot(x: torch.Tensor, v_bins: torch.Tensor) -> torch.Tensor:
reshaped_bins = v_bins.view(((1,) * len(x.shape)) + (len(v_bins),))
diffs = x[..., None] - reshaped_bins
am = torch.argmin(torch.abs(diffs), dim=-1)
return nn.functional.one_hot(am, num_classes=len(v_bins)).float()
def batched_gather(data: torch.Tensor, inds: torch.Tensor, dim: int = 0, no_batch_dims: int = 0) -> torch.Tensor:
ranges: List[Union[slice, torch.Tensor]] = []
for i, s in enumerate(data.shape[:no_batch_dims]):
r = torch.arange(s)
r = r.view(*(*((1,) * i), -1, *((1,) * (len(inds.shape) - i - 1))))
ranges.append(r)
remaining_dims: List[Union[slice, torch.Tensor]] = [slice(None) for _ in range(len(data.shape) - no_batch_dims)]
remaining_dims[dim - no_batch_dims if dim >= 0 else dim] = inds
ranges.extend(remaining_dims)
# Matt note: Editing this to get around the behaviour of using a list as an array index changing
# in recent Numpy versions
return data[tuple(ranges)]
T = TypeVar("T")
# With tree_map, a poor man's JAX tree_map
def dict_map(
fn: Callable[[T], Any], dic: Dict[Any, Union[dict, list, tuple, T]], leaf_type: Type[T]
) -> Dict[Any, Union[dict, list, tuple, Any]]:
new_dict: Dict[Any, Union[dict, list, tuple, Any]] = {}
for k, v in dic.items():
if isinstance(v, dict):
new_dict[k] = dict_map(fn, v, leaf_type)
else:
new_dict[k] = tree_map(fn, v, leaf_type)
return new_dict
@overload
def tree_map(fn: Callable[[T], Any], tree: T, leaf_type: Type[T]) -> Any: ...
@overload
def tree_map(fn: Callable[[T], Any], tree: dict, leaf_type: Type[T]) -> dict: ...
@overload
def tree_map(fn: Callable[[T], Any], tree: list, leaf_type: Type[T]) -> list: ...
@overload
def tree_map(fn: Callable[[T], Any], tree: tuple, leaf_type: Type[T]) -> tuple: ...
def tree_map(fn, tree, leaf_type):
if isinstance(tree, dict):
return dict_map(fn, tree, leaf_type)
elif isinstance(tree, list):
return [tree_map(fn, x, leaf_type) for x in tree]
elif isinstance(tree, tuple):
return tuple(tree_map(fn, x, leaf_type) for x in tree)
elif isinstance(tree, leaf_type):
return fn(tree)
else:
print(type(tree))
raise TypeError("Not supported")
tensor_tree_map = partial(tree_map, leaf_type=torch.Tensor)
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/chunk_utils.py | # Copyright 2021 AlQuraishi Laboratory
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
import math
from functools import partial
from typing import Any, Callable, Dict, Iterable, List, Optional, Sequence, Tuple, Union
import torch
from .tensor_utils import tensor_tree_map, tree_map
def _fetch_dims(tree: Union[dict, list, tuple, torch.Tensor]) -> List[Tuple[int, ...]]:
shapes = []
if isinstance(tree, dict):
for v in tree.values():
shapes.extend(_fetch_dims(v))
elif isinstance(tree, (list, tuple)):
for t in tree:
shapes.extend(_fetch_dims(t))
elif isinstance(tree, torch.Tensor):
shapes.append(tree.shape)
else:
raise TypeError("Not supported")
return shapes
@torch.jit.ignore
def _flat_idx_to_idx(flat_idx: int, dims: Tuple[int, ...]) -> Tuple[int, ...]:
idx = []
for d in reversed(dims):
idx.append(flat_idx % d)
flat_idx = flat_idx // d
return tuple(reversed(idx))
@torch.jit.ignore
def _get_minimal_slice_set(
start: Sequence[int],
end: Sequence[int],
dims: Sequence[int],
start_edges: Optional[Sequence[bool]] = None,
end_edges: Optional[Sequence[bool]] = None,
) -> List[Tuple[slice, ...]]:
"""
Produces an ordered sequence of tensor slices that, when used in sequence on a tensor with shape dims, yields
tensors that contain every leaf in the contiguous range [start, end]. Care is taken to yield a short sequence of
slices, and perhaps even the shortest possible (I'm pretty sure it's the latter).
end is INCLUSIVE.
"""
# start_edges and end_edges both indicate whether, starting from any given
# dimension, the start/end index is at the top/bottom edge of the
# corresponding tensor, modeled as a tree
def reduce_edge_list(l: List[bool]) -> None:
tally = True
for i in range(len(l)):
reversed_idx = -1 * (i + 1)
l[reversed_idx] &= tally
tally = l[reversed_idx]
if start_edges is None:
start_edges = [s == 0 for s in start]
reduce_edge_list(start_edges)
if end_edges is None:
end_edges = [e == (d - 1) for e, d in zip(end, dims)]
reduce_edge_list(end_edges)
# Base cases. Either start/end are empty and we're done, or the final,
# one-dimensional tensor can be simply sliced
if len(start) == 0:
return [()]
elif len(start) == 1:
return [(slice(start[0], end[0] + 1),)]
slices: List[Tuple[slice, ...]] = []
path_list: List[slice] = []
# Dimensions common to start and end can be selected directly
for s, e in zip(start, end):
if s == e:
path_list.append(slice(s, s + 1))
else:
break
path: Tuple[slice, ...] = tuple(path_list)
divergence_idx = len(path)
# start == end, and we're done
if divergence_idx == len(dims):
return [path]
def upper() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
sdi = start[divergence_idx]
return tuple(
path + (slice(sdi, sdi + 1),) + s
for s in _get_minimal_slice_set(
start[divergence_idx + 1 :],
[d - 1 for d in dims[divergence_idx + 1 :]],
dims[divergence_idx + 1 :],
start_edges=start_edges[divergence_idx + 1 :],
end_edges=[True for _ in end_edges[divergence_idx + 1 :]],
)
)
def lower() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
edi = end[divergence_idx]
return tuple(
path + (slice(edi, edi + 1),) + s
for s in _get_minimal_slice_set(
[0 for _ in start[divergence_idx + 1 :]],
end[divergence_idx + 1 :],
dims[divergence_idx + 1 :],
start_edges=[True for _ in start_edges[divergence_idx + 1 :]],
end_edges=end_edges[divergence_idx + 1 :],
)
)
# If both start and end are at the edges of the subtree rooted at
# divergence_idx, we can just select the whole subtree at once
if start_edges[divergence_idx] and end_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx] + 1),))
# If just start is at the edge, we can grab almost all of the subtree,
# treating only the ragged bottom edge as an edge case
elif start_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx]),))
slices.extend(lower())
# Analogous to the previous case, but the top is ragged this time
elif end_edges[divergence_idx]:
slices.extend(upper())
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx] + 1),))
# If both sides of the range are ragged, we need to handle both sides
# separately. If there's contiguous meat in between them, we can index it
# in one big chunk
else:
slices.extend(upper())
middle_ground = end[divergence_idx] - start[divergence_idx]
if middle_ground > 1:
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx]),))
slices.extend(lower())
return slices
@torch.jit.ignore
def _chunk_slice(t: torch.Tensor, flat_start: int, flat_end: int, no_batch_dims: int) -> torch.Tensor:
"""
Equivalent to
t.reshape((-1,) + t.shape[no_batch_dims:])[flat_start:flat_end]
but without the need for the initial reshape call, which can be memory-intensive in certain situations. The only
reshape operations in this function are performed on sub-tensors that scale with (flat_end - flat_start), the chunk
size.
"""
batch_dims = t.shape[:no_batch_dims]
start_idx = list(_flat_idx_to_idx(flat_start, batch_dims))
# _get_minimal_slice_set is inclusive
end_idx = list(_flat_idx_to_idx(flat_end - 1, batch_dims))
# Get an ordered list of slices to perform
slices = _get_minimal_slice_set(
start_idx,
end_idx,
batch_dims,
)
sliced_tensors = [t[s] for s in slices]
return torch.cat([s.view((-1,) + t.shape[no_batch_dims:]) for s in sliced_tensors])
def chunk_layer(
layer: Callable,
inputs: Dict[str, Any],
chunk_size: int,
no_batch_dims: int,
low_mem: bool = False,
_out: Any = None,
_add_into_out: bool = False,
) -> Any:
"""
Implements the "chunking" procedure described in section 1.11.8.
Layer outputs and inputs are assumed to be simple "pytrees," consisting only of (arbitrarily nested) lists, tuples,
and dicts with torch.Tensor leaves.
Args:
layer:
The layer to be applied chunk-wise
inputs:
A (non-nested) dictionary of keyworded inputs. All leaves must be tensors and must share the same batch
dimensions.
chunk_size:
The number of sub-batches per chunk. If multiple batch dimensions are specified, a "sub-batch" is defined
as a single indexing of all batch dimensions simultaneously (s.t. the number of sub-batches is the product
of the batch dimensions).
no_batch_dims:
How many of the initial dimensions of each input tensor can be considered batch dimensions.
low_mem:
Avoids flattening potentially large input tensors. Unnecessary in most cases, and is ever so slightly
slower than the default setting.
Returns:
The reassembled output of the layer on the inputs.
"""
if not (len(inputs) > 0):
raise ValueError("Must provide at least one input")
initial_dims = [shape[:no_batch_dims] for shape in _fetch_dims(inputs)]
orig_batch_dims = tuple([max(s) for s in zip(*initial_dims)])
def _prep_inputs(t: torch.Tensor) -> torch.Tensor:
if not low_mem:
if not sum(t.shape[:no_batch_dims]) == no_batch_dims:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
t = t.reshape(-1, *t.shape[no_batch_dims:])
else:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
return t
prepped_inputs: Dict[str, Any] = tensor_tree_map(_prep_inputs, inputs)
prepped_outputs = None
if _out is not None:
prepped_outputs = tensor_tree_map(lambda t: t.view([-1] + list(t.shape[no_batch_dims:])), _out)
flat_batch_dim = 1
for d in orig_batch_dims:
flat_batch_dim *= d
no_chunks = flat_batch_dim // chunk_size + (flat_batch_dim % chunk_size != 0)
def _select_chunk(t: torch.Tensor) -> torch.Tensor:
return t[i : i + chunk_size] if t.shape[0] != 1 else t
i = 0
out = prepped_outputs
for _ in range(no_chunks):
# Chunk the input
if not low_mem:
select_chunk = _select_chunk
else:
select_chunk = partial(
_chunk_slice,
flat_start=i,
flat_end=min(flat_batch_dim, i + chunk_size),
no_batch_dims=len(orig_batch_dims),
)
chunks: Dict[str, Any] = tensor_tree_map(select_chunk, prepped_inputs)
# Run the layer on the chunk
output_chunk = layer(**chunks)
# Allocate space for the output
if out is None:
out = tensor_tree_map(lambda t: t.new_zeros((flat_batch_dim,) + t.shape[1:]), output_chunk)
# Put the chunk in its pre-allocated space
if isinstance(output_chunk, dict):
def assign(d1: dict, d2: dict) -> None:
for k, v in d1.items():
if isinstance(v, dict):
assign(v, d2[k])
else:
if _add_into_out:
v[i : i + chunk_size] += d2[k]
else:
v[i : i + chunk_size] = d2[k]
assign(out, output_chunk)
elif isinstance(output_chunk, tuple):
for x1, x2 in zip(out, output_chunk):
if _add_into_out:
x1[i : i + chunk_size] += x2
else:
x1[i : i + chunk_size] = x2
elif isinstance(output_chunk, torch.Tensor):
if _add_into_out:
out[i : i + chunk_size] += output_chunk
else:
out[i : i + chunk_size] = output_chunk
else:
raise TypeError("Not supported")
i += chunk_size
out = tensor_tree_map(lambda t: t.view(orig_batch_dims + t.shape[1:]), out)
return out
class ChunkSizeTuner:
def __init__(
self,
# Heuristically, runtimes for most of the modules in the network
# plateau earlier than this on all GPUs I've run the model on.
max_chunk_size: int = 512,
):
self.max_chunk_size = max_chunk_size
self.cached_chunk_size: Optional[int] = None
self.cached_arg_data: Optional[tuple] = None
def _determine_favorable_chunk_size(self, fn: Callable, args: tuple, min_chunk_size: int) -> int:
logging.info("Tuning chunk size...")
if min_chunk_size >= self.max_chunk_size:
return min_chunk_size
candidates: List[int] = [2**l for l in range(int(math.log(self.max_chunk_size, 2)) + 1)]
candidates = [c for c in candidates if c > min_chunk_size]
candidates = [min_chunk_size] + candidates
candidates[-1] += 4
def test_chunk_size(chunk_size: int) -> bool:
try:
with torch.no_grad():
fn(*args, chunk_size=chunk_size)
return True
except RuntimeError:
return False
min_viable_chunk_size_index = 0
i = len(candidates) - 1
while i > min_viable_chunk_size_index:
viable = test_chunk_size(candidates[i])
if not viable:
i = (min_viable_chunk_size_index + i) // 2
else:
min_viable_chunk_size_index = i
i = (i + len(candidates) - 1) // 2
return candidates[min_viable_chunk_size_index]
def _compare_arg_caches(self, ac1: Iterable, ac2: Iterable) -> bool:
consistent = True
for a1, a2 in zip(ac1, ac2):
assert type(ac1) is type(ac2)
if isinstance(ac1, (list, tuple)):
consistent &= self._compare_arg_caches(a1, a2)
elif isinstance(ac1, dict):
a1_items = [v for _, v in sorted(a1.items(), key=lambda x: x[0])]
a2_items = [v for _, v in sorted(a2.items(), key=lambda x: x[0])]
consistent &= self._compare_arg_caches(a1_items, a2_items)
else:
consistent &= a1 == a2
return consistent
def tune_chunk_size(
self,
representative_fn: Callable,
args: tuple,
min_chunk_size: int,
) -> int:
consistent = True
arg_data: tuple = tree_map(lambda a: a.shape if isinstance(a, torch.Tensor) else a, args, object)
if self.cached_arg_data is not None:
# If args have changed shape/value, we need to re-tune
assert len(self.cached_arg_data) == len(arg_data)
consistent = self._compare_arg_caches(self.cached_arg_data, arg_data)
else:
# Otherwise, we can reuse the precomputed value
consistent = False
if not consistent:
self.cached_chunk_size = self._determine_favorable_chunk_size(
representative_fn,
args,
min_chunk_size,
)
self.cached_arg_data = arg_data
assert self.cached_chunk_size is not None
return self.cached_chunk_size
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/rigid_utils.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import annotations
from functools import lru_cache
from typing import Any, Callable, Dict, List, Optional, Sequence, Tuple
import numpy as np
import torch
def rot_matmul(a: torch.Tensor, b: torch.Tensor) -> torch.Tensor:
"""
Performs matrix multiplication of two rotation matrix tensors. Written out by hand to avoid AMP downcasting.
Args:
a: [*, 3, 3] left multiplicand
b: [*, 3, 3] right multiplicand
Returns:
The product ab
"""
def row_mul(i: int) -> torch.Tensor:
return torch.stack(
[
a[..., i, 0] * b[..., 0, 0] + a[..., i, 1] * b[..., 1, 0] + a[..., i, 2] * b[..., 2, 0],
a[..., i, 0] * b[..., 0, 1] + a[..., i, 1] * b[..., 1, 1] + a[..., i, 2] * b[..., 2, 1],
a[..., i, 0] * b[..., 0, 2] + a[..., i, 1] * b[..., 1, 2] + a[..., i, 2] * b[..., 2, 2],
],
dim=-1,
)
return torch.stack(
[
row_mul(0),
row_mul(1),
row_mul(2),
],
dim=-2,
)
def rot_vec_mul(r: torch.Tensor, t: torch.Tensor) -> torch.Tensor:
"""
Applies a rotation to a vector. Written out by hand to avoid transfer to avoid AMP downcasting.
Args:
r: [*, 3, 3] rotation matrices
t: [*, 3] coordinate tensors
Returns:
[*, 3] rotated coordinates
"""
x, y, z = torch.unbind(t, dim=-1)
return torch.stack(
[
r[..., 0, 0] * x + r[..., 0, 1] * y + r[..., 0, 2] * z,
r[..., 1, 0] * x + r[..., 1, 1] * y + r[..., 1, 2] * z,
r[..., 2, 0] * x + r[..., 2, 1] * y + r[..., 2, 2] * z,
],
dim=-1,
)
@lru_cache(maxsize=None)
def identity_rot_mats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
rots = torch.eye(3, dtype=dtype, device=device, requires_grad=requires_grad)
rots = rots.view(*((1,) * len(batch_dims)), 3, 3)
rots = rots.expand(*batch_dims, -1, -1)
rots = rots.contiguous()
return rots
@lru_cache(maxsize=None)
def identity_trans(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
trans = torch.zeros((*batch_dims, 3), dtype=dtype, device=device, requires_grad=requires_grad)
return trans
@lru_cache(maxsize=None)
def identity_quats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
quat = torch.zeros((*batch_dims, 4), dtype=dtype, device=device, requires_grad=requires_grad)
with torch.no_grad():
quat[..., 0] = 1
return quat
_quat_elements: List[str] = ["a", "b", "c", "d"]
_qtr_keys: List[str] = [l1 + l2 for l1 in _quat_elements for l2 in _quat_elements]
_qtr_ind_dict: Dict[str, int] = {key: ind for ind, key in enumerate(_qtr_keys)}
def _to_mat(pairs: List[Tuple[str, int]]) -> np.ndarray:
mat = np.zeros((4, 4))
for key, value in pairs:
ind = _qtr_ind_dict[key]
mat[ind // 4][ind % 4] = value
return mat
_QTR_MAT = np.zeros((4, 4, 3, 3))
_QTR_MAT[..., 0, 0] = _to_mat([("aa", 1), ("bb", 1), ("cc", -1), ("dd", -1)])
_QTR_MAT[..., 0, 1] = _to_mat([("bc", 2), ("ad", -2)])
_QTR_MAT[..., 0, 2] = _to_mat([("bd", 2), ("ac", 2)])
_QTR_MAT[..., 1, 0] = _to_mat([("bc", 2), ("ad", 2)])
_QTR_MAT[..., 1, 1] = _to_mat([("aa", 1), ("bb", -1), ("cc", 1), ("dd", -1)])
_QTR_MAT[..., 1, 2] = _to_mat([("cd", 2), ("ab", -2)])
_QTR_MAT[..., 2, 0] = _to_mat([("bd", 2), ("ac", -2)])
_QTR_MAT[..., 2, 1] = _to_mat([("cd", 2), ("ab", 2)])
_QTR_MAT[..., 2, 2] = _to_mat([("aa", 1), ("bb", -1), ("cc", -1), ("dd", 1)])
def quat_to_rot(quat: torch.Tensor) -> torch.Tensor:
"""
Converts a quaternion to a rotation matrix.
Args:
quat: [*, 4] quaternions
Returns:
[*, 3, 3] rotation matrices
"""
# [*, 4, 4]
quat = quat[..., None] * quat[..., None, :]
# [4, 4, 3, 3]
mat = _get_quat("_QTR_MAT", dtype=quat.dtype, device=quat.device)
# [*, 4, 4, 3, 3]
shaped_qtr_mat = mat.view((1,) * len(quat.shape[:-2]) + mat.shape)
quat = quat[..., None, None] * shaped_qtr_mat
# [*, 3, 3]
return torch.sum(quat, dim=(-3, -4))
def rot_to_quat(rot: torch.Tensor) -> torch.Tensor:
if rot.shape[-2:] != (3, 3):
raise ValueError("Input rotation is incorrectly shaped")
[[xx, xy, xz], [yx, yy, yz], [zx, zy, zz]] = [[rot[..., i, j] for j in range(3)] for i in range(3)]
k = [
[
xx + yy + zz,
zy - yz,
xz - zx,
yx - xy,
],
[
zy - yz,
xx - yy - zz,
xy + yx,
xz + zx,
],
[
xz - zx,
xy + yx,
yy - xx - zz,
yz + zy,
],
[
yx - xy,
xz + zx,
yz + zy,
zz - xx - yy,
],
]
_, vectors = torch.linalg.eigh((1.0 / 3.0) * torch.stack([torch.stack(t, dim=-1) for t in k], dim=-2))
return vectors[..., -1]
_QUAT_MULTIPLY = np.zeros((4, 4, 4))
_QUAT_MULTIPLY[:, :, 0] = [[1, 0, 0, 0], [0, -1, 0, 0], [0, 0, -1, 0], [0, 0, 0, -1]]
_QUAT_MULTIPLY[:, :, 1] = [[0, 1, 0, 0], [1, 0, 0, 0], [0, 0, 0, 1], [0, 0, -1, 0]]
_QUAT_MULTIPLY[:, :, 2] = [[0, 0, 1, 0], [0, 0, 0, -1], [1, 0, 0, 0], [0, 1, 0, 0]]
_QUAT_MULTIPLY[:, :, 3] = [[0, 0, 0, 1], [0, 0, 1, 0], [0, -1, 0, 0], [1, 0, 0, 0]]
_QUAT_MULTIPLY_BY_VEC = _QUAT_MULTIPLY[:, 1:, :]
_CACHED_QUATS: Dict[str, np.ndarray] = {
"_QTR_MAT": _QTR_MAT,
"_QUAT_MULTIPLY": _QUAT_MULTIPLY,
"_QUAT_MULTIPLY_BY_VEC": _QUAT_MULTIPLY_BY_VEC,
}
@lru_cache(maxsize=None)
def _get_quat(quat_key: str, dtype: torch.dtype, device: torch.device) -> torch.Tensor:
return torch.tensor(_CACHED_QUATS[quat_key], dtype=dtype, device=device)
def quat_multiply(quat1: torch.Tensor, quat2: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by another quaternion."""
mat = _get_quat("_QUAT_MULTIPLY", dtype=quat1.dtype, device=quat1.device)
reshaped_mat = mat.view((1,) * len(quat1.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat1[..., :, None, None] * quat2[..., None, :, None], dim=(-3, -2))
def quat_multiply_by_vec(quat: torch.Tensor, vec: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by a pure-vector quaternion."""
mat = _get_quat("_QUAT_MULTIPLY_BY_VEC", dtype=quat.dtype, device=quat.device)
reshaped_mat = mat.view((1,) * len(quat.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat[..., :, None, None] * vec[..., None, :, None], dim=(-3, -2))
def invert_rot_mat(rot_mat: torch.Tensor) -> torch.Tensor:
return rot_mat.transpose(-1, -2)
def invert_quat(quat: torch.Tensor) -> torch.Tensor:
quat_prime = quat.clone()
quat_prime[..., 1:] *= -1
inv = quat_prime / torch.sum(quat**2, dim=-1, keepdim=True)
return inv
class Rotation:
"""
A 3D rotation. Depending on how the object is initialized, the rotation is represented by either a rotation matrix
or a quaternion, though both formats are made available by helper functions. To simplify gradient computation, the
underlying format of the rotation cannot be changed in-place. Like Rigid, the class is designed to mimic the
behavior of a torch Tensor, almost as if each Rotation object were a tensor of rotations, in one format or another.
"""
def __init__(
self,
rot_mats: Optional[torch.Tensor] = None,
quats: Optional[torch.Tensor] = None,
normalize_quats: bool = True,
):
"""
Args:
rot_mats:
A [*, 3, 3] rotation matrix tensor. Mutually exclusive with quats
quats:
A [*, 4] quaternion. Mutually exclusive with rot_mats. If normalize_quats is not True, must be a unit
quaternion
normalize_quats:
If quats is specified, whether to normalize quats
"""
if (rot_mats is None and quats is None) or (rot_mats is not None and quats is not None):
raise ValueError("Exactly one input argument must be specified")
if (rot_mats is not None and rot_mats.shape[-2:] != (3, 3)) or (quats is not None and quats.shape[-1] != 4):
raise ValueError("Incorrectly shaped rotation matrix or quaternion")
# Force full-precision
if quats is not None:
quats = quats.to(dtype=torch.float32)
if rot_mats is not None:
rot_mats = rot_mats.to(dtype=torch.float32)
if quats is not None and normalize_quats:
quats = quats / torch.linalg.norm(quats, dim=-1, keepdim=True)
self._rot_mats = rot_mats
self._quats = quats
@staticmethod
def identity(
shape,
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rotation:
"""
Returns an identity Rotation.
Args:
shape:
The "shape" of the resulting Rotation object. See documentation for the shape property
dtype:
The torch dtype for the rotation
device:
The torch device for the new rotation
requires_grad:
Whether the underlying tensors in the new rotation object should require gradient computation
fmt:
One of "quat" or "rot_mat". Determines the underlying format of the new object's rotation
Returns:
A new identity rotation
"""
if fmt == "rot_mat":
rot_mats = identity_rot_mats(
shape,
dtype,
device,
requires_grad,
)
return Rotation(rot_mats=rot_mats, quats=None)
elif fmt == "quat":
quats = identity_quats(shape, dtype, device, requires_grad)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError(f"Invalid format: f{fmt}")
# Magic methods
def __getitem__(self, index: Any) -> Rotation:
"""
Allows torch-style indexing over the virtual shape of the rotation object. See documentation for the shape
property.
Args:
index:
A torch index. E.g. (1, 3, 2), or (slice(None,))
Returns:
The indexed rotation
"""
if type(index) is not tuple:
index = (index,)
if self._rot_mats is not None:
rot_mats = self._rot_mats[index + (slice(None), slice(None))]
return Rotation(rot_mats=rot_mats)
elif self._quats is not None:
quats = self._quats[index + (slice(None),)]
return Rotation(quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __mul__(self, right: torch.Tensor) -> Rotation:
"""
Pointwise left multiplication of the rotation with a tensor. Can be used to e.g. mask the Rotation.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
if self._rot_mats is not None:
rot_mats = self._rot_mats * right[..., None, None]
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats * right[..., None]
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __rmul__(self, left: torch.Tensor) -> Rotation:
"""
Reverse pointwise multiplication of the rotation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
# Properties
@property
def shape(self) -> torch.Size:
"""
Returns the virtual shape of the rotation object. This shape is defined as the batch dimensions of the
underlying rotation matrix or quaternion. If the Rotation was initialized with a [10, 3, 3] rotation matrix
tensor, for example, the resulting shape would be [10].
Returns:
The virtual shape of the rotation object
"""
if self._rot_mats is not None:
return self._rot_mats.shape[:-2]
elif self._quats is not None:
return self._quats.shape[:-1]
else:
raise ValueError("Both rotations are None")
@property
def dtype(self) -> torch.dtype:
"""
Returns the dtype of the underlying rotation.
Returns:
The dtype of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.dtype
elif self._quats is not None:
return self._quats.dtype
else:
raise ValueError("Both rotations are None")
@property
def device(self) -> torch.device:
"""
The device of the underlying rotation
Returns:
The device of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.device
elif self._quats is not None:
return self._quats.device
else:
raise ValueError("Both rotations are None")
@property
def requires_grad(self) -> bool:
"""
Returns the requires_grad property of the underlying rotation
Returns:
The requires_grad property of the underlying tensor
"""
if self._rot_mats is not None:
return self._rot_mats.requires_grad
elif self._quats is not None:
return self._quats.requires_grad
else:
raise ValueError("Both rotations are None")
def get_rot_mats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a rotation matrix tensor.
Returns:
The rotation as a rotation matrix tensor
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return quat_to_rot(self._quats)
else:
raise ValueError("Both rotations are None")
def get_quats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a quaternion tensor.
Depending on whether the Rotation was initialized with a quaternion, this function may call torch.linalg.eigh.
Returns:
The rotation as a quaternion tensor.
"""
if self._rot_mats is not None:
return rot_to_quat(self._rot_mats)
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
def get_cur_rot(self) -> torch.Tensor:
"""
Return the underlying rotation in its current form
Returns:
The stored rotation
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
# Rotation functions
def compose_q_update_vec(self, q_update_vec: torch.Tensor, normalize_quats: bool = True) -> Rotation:
"""
Returns a new quaternion Rotation after updating the current object's underlying rotation with a quaternion
update, formatted as a [*, 3] tensor whose final three columns represent x, y, z such that (1, x, y, z) is the
desired (not necessarily unit) quaternion update.
Args:
q_update_vec:
A [*, 3] quaternion update tensor
normalize_quats:
Whether to normalize the output quaternion
Returns:
An updated Rotation
"""
quats = self.get_quats()
new_quats = quats + quat_multiply_by_vec(quats, q_update_vec)
return Rotation(
rot_mats=None,
quats=new_quats,
normalize_quats=normalize_quats,
)
def compose_r(self, r: Rotation) -> Rotation:
"""
Compose the rotation matrices of the current Rotation object with those of another.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
r1 = self.get_rot_mats()
r2 = r.get_rot_mats()
new_rot_mats = rot_matmul(r1, r2)
return Rotation(rot_mats=new_rot_mats, quats=None)
def compose_q(self, r: Rotation, normalize_quats: bool = True) -> Rotation:
"""
Compose the quaternions of the current Rotation object with those of another.
Depending on whether either Rotation was initialized with quaternions, this function may call
torch.linalg.eigh.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
q1 = self.get_quats()
q2 = r.get_quats()
new_quats = quat_multiply(q1, q2)
return Rotation(rot_mats=None, quats=new_quats, normalize_quats=normalize_quats)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Apply the current Rotation as a rotation matrix to a set of 3D coordinates.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] rotated points
"""
rot_mats = self.get_rot_mats()
return rot_vec_mul(rot_mats, pts)
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
The inverse of the apply() method.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] inverse-rotated points
"""
rot_mats = self.get_rot_mats()
inv_rot_mats = invert_rot_mat(rot_mats)
return rot_vec_mul(inv_rot_mats, pts)
def invert(self) -> Rotation:
"""
Returns the inverse of the current Rotation.
Returns:
The inverse of the current Rotation
"""
if self._rot_mats is not None:
return Rotation(rot_mats=invert_rot_mat(self._rot_mats), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=invert_quat(self._quats),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
# "Tensor" stuff
def unsqueeze(self, dim: int) -> Rotation:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shape of the Rotation object.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed Rotation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
if self._rot_mats is not None:
rot_mats = self._rot_mats.unsqueeze(dim if dim >= 0 else dim - 2)
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats.unsqueeze(dim if dim >= 0 else dim - 1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
@staticmethod
def cat(rs: Sequence[Rotation], dim: int) -> Rotation:
"""
Concatenates rotations along one of the batch dimensions. Analogous to torch.cat().
Note that the output of this operation is always a rotation matrix, regardless of the format of input
rotations.
Args:
rs:
A list of rotation objects
dim:
The dimension along which the rotations should be concatenated
Returns:
A concatenated Rotation object in rotation matrix format
"""
rot_mats = torch.cat(
[r.get_rot_mats() for r in rs],
dim=dim if dim >= 0 else dim - 2,
)
return Rotation(rot_mats=rot_mats, quats=None)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rotation:
"""
Apply a Tensor -> Tensor function to underlying rotation tensors, mapping over the rotation dimension(s). Can
be used e.g. to sum out a one-hot batch dimension.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rotation
Returns:
The transformed Rotation object
"""
if self._rot_mats is not None:
rot_mats = self._rot_mats.view(self._rot_mats.shape[:-2] + (9,))
rot_mats = torch.stack(list(map(fn, torch.unbind(rot_mats, dim=-1))), dim=-1)
rot_mats = rot_mats.view(rot_mats.shape[:-1] + (3, 3))
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = torch.stack(list(map(fn, torch.unbind(self._quats, dim=-1))), dim=-1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def cuda(self) -> Rotation:
"""
Analogous to the cuda() method of torch Tensors
Returns:
A copy of the Rotation in CUDA memory
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.cuda(), quats=None)
elif self._quats is not None:
return Rotation(rot_mats=None, quats=self._quats.cuda(), normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def to(self, device: Optional[torch.device], dtype: Optional[torch.dtype]) -> Rotation:
"""
Analogous to the to() method of torch Tensors
Args:
device:
A torch device
dtype:
A torch dtype
Returns:
A copy of the Rotation using the new device and dtype
"""
if self._rot_mats is not None:
return Rotation(
rot_mats=self._rot_mats.to(device=device, dtype=dtype),
quats=None,
)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.to(device=device, dtype=dtype),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
def detach(self) -> Rotation:
"""
Returns a copy of the Rotation whose underlying Tensor has been detached from its torch graph.
Returns:
A copy of the Rotation whose underlying Tensor has been detached from its torch graph
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.detach(), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.detach(),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
class Rigid:
"""
A class representing a rigid transformation. Little more than a wrapper around two objects: a Rotation object and a
[*, 3] translation Designed to behave approximately like a single torch tensor with the shape of the shared batch
dimensions of its component parts.
"""
def __init__(self, rots: Optional[Rotation], trans: Optional[torch.Tensor]):
"""
Args:
rots: A [*, 3, 3] rotation tensor
trans: A corresponding [*, 3] translation tensor
"""
# (we need device, dtype, etc. from at least one input)
batch_dims, dtype, device, requires_grad = None, None, None, None
if trans is not None:
batch_dims = trans.shape[:-1]
dtype = trans.dtype
device = trans.device
requires_grad = trans.requires_grad
elif rots is not None:
batch_dims = rots.shape
dtype = rots.dtype
device = rots.device
requires_grad = rots.requires_grad
else:
raise ValueError("At least one input argument must be specified")
if rots is None:
rots = Rotation.identity(
batch_dims,
dtype,
device,
requires_grad,
)
elif trans is None:
trans = identity_trans(
batch_dims,
dtype,
device,
requires_grad,
)
assert rots is not None
assert trans is not None
if (rots.shape != trans.shape[:-1]) or (rots.device != trans.device):
raise ValueError("Rots and trans incompatible")
# Force full precision. Happens to the rotations automatically.
trans = trans.to(dtype=torch.float32)
self._rots = rots
self._trans = trans
@staticmethod
def identity(
shape: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rigid:
"""
Constructs an identity transformation.
Args:
shape:
The desired shape
dtype:
The dtype of both internal tensors
device:
The device of both internal tensors
requires_grad:
Whether grad should be enabled for the internal tensors
Returns:
The identity transformation
"""
return Rigid(
Rotation.identity(shape, dtype, device, requires_grad, fmt=fmt),
identity_trans(shape, dtype, device, requires_grad),
)
def __getitem__(self, index: Any) -> Rigid:
"""
Indexes the affine transformation with PyTorch-style indices. The index is applied to the shared dimensions of
both the rotation and the translation.
E.g.::
r = Rotation(rot_mats=torch.rand(10, 10, 3, 3), quats=None) t = Rigid(r, torch.rand(10, 10, 3)) indexed =
t[3, 4:6] assert(indexed.shape == (2,)) assert(indexed.get_rots().shape == (2,))
assert(indexed.get_trans().shape == (2, 3))
Args:
index: A standard torch tensor index. E.g. 8, (10, None, 3),
or (3, slice(0, 1, None))
Returns:
The indexed tensor
"""
if type(index) is not tuple:
index = (index,)
return Rigid(
self._rots[index],
self._trans[index + (slice(None),)],
)
def __mul__(self, right: torch.Tensor) -> Rigid:
"""
Pointwise left multiplication of the transformation with a tensor. Can be used to e.g. mask the Rigid.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
new_rots = self._rots * right
new_trans = self._trans * right[..., None]
return Rigid(new_rots, new_trans)
def __rmul__(self, left: torch.Tensor) -> Rigid:
"""
Reverse pointwise multiplication of the transformation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
@property
def shape(self) -> torch.Size:
"""
Returns the shape of the shared dimensions of the rotation and the translation.
Returns:
The shape of the transformation
"""
return self._trans.shape[:-1]
@property
def device(self) -> torch.device:
"""
Returns the device on which the Rigid's tensors are located.
Returns:
The device on which the Rigid's tensors are located
"""
return self._trans.device
def get_rots(self) -> Rotation:
"""
Getter for the rotation.
Returns:
The rotation object
"""
return self._rots
def get_trans(self) -> torch.Tensor:
"""
Getter for the translation.
Returns:
The stored translation
"""
return self._trans
def compose_q_update_vec(self, q_update_vec: torch.Tensor) -> Rigid:
"""
Composes the transformation with a quaternion update vector of shape [*, 6], where the final 6 columns
represent the x, y, and z values of a quaternion of form (1, x, y, z) followed by a 3D translation.
Args:
q_vec: The quaternion update vector.
Returns:
The composed transformation.
"""
q_vec, t_vec = q_update_vec[..., :3], q_update_vec[..., 3:]
new_rots = self._rots.compose_q_update_vec(q_vec)
trans_update = self._rots.apply(t_vec)
new_translation = self._trans + trans_update
return Rigid(new_rots, new_translation)
def compose(self, r: Rigid) -> Rigid:
"""
Composes the current rigid object with another.
Args:
r:
Another Rigid object
Returns:
The composition of the two transformations
"""
new_rot = self._rots.compose_r(r._rots)
new_trans = self._rots.apply(r._trans) + self._trans
return Rigid(new_rot, new_trans)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor.
Returns:
The transformed points.
"""
rotated = self._rots.apply(pts)
return rotated + self._trans
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the inverse of the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor
Returns:
The transformed points.
"""
pts = pts - self._trans
return self._rots.invert_apply(pts)
def invert(self) -> Rigid:
"""
Inverts the transformation.
Returns:
The inverse transformation.
"""
rot_inv = self._rots.invert()
trn_inv = rot_inv.apply(self._trans)
return Rigid(rot_inv, -1 * trn_inv)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Apply a Tensor -> Tensor function to underlying translation and rotation tensors, mapping over the
translation/rotation dimensions respectively.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rigid
Returns:
The transformed Rigid object
"""
new_rots = self._rots.map_tensor_fn(fn)
new_trans = torch.stack(list(map(fn, torch.unbind(self._trans, dim=-1))), dim=-1)
return Rigid(new_rots, new_trans)
def to_tensor_4x4(self) -> torch.Tensor:
"""
Converts a transformation to a homogenous transformation tensor.
Returns:
A [*, 4, 4] homogenous transformation tensor
"""
tensor = self._trans.new_zeros((*self.shape, 4, 4))
tensor[..., :3, :3] = self._rots.get_rot_mats()
tensor[..., :3, 3] = self._trans
tensor[..., 3, 3] = 1
return tensor
@staticmethod
def from_tensor_4x4(t: torch.Tensor) -> Rigid:
"""
Constructs a transformation from a homogenous transformation tensor.
Args:
t: [*, 4, 4] homogenous transformation tensor
Returns:
T object with shape [*]
"""
if t.shape[-2:] != (4, 4):
raise ValueError("Incorrectly shaped input tensor")
rots = Rotation(rot_mats=t[..., :3, :3], quats=None)
trans = t[..., :3, 3]
return Rigid(rots, trans)
def to_tensor_7(self) -> torch.Tensor:
"""
Converts a transformation to a tensor with 7 final columns, four for the quaternion followed by three for the
translation.
Returns:
A [*, 7] tensor representation of the transformation
"""
tensor = self._trans.new_zeros((*self.shape, 7))
tensor[..., :4] = self._rots.get_quats()
tensor[..., 4:] = self._trans
return tensor
@staticmethod
def from_tensor_7(t: torch.Tensor, normalize_quats: bool = False) -> Rigid:
if t.shape[-1] != 7:
raise ValueError("Incorrectly shaped input tensor")
quats, trans = t[..., :4], t[..., 4:]
rots = Rotation(rot_mats=None, quats=quats, normalize_quats=normalize_quats)
return Rigid(rots, trans)
@staticmethod
def from_3_points(
p_neg_x_axis: torch.Tensor, origin: torch.Tensor, p_xy_plane: torch.Tensor, eps: float = 1e-8
) -> Rigid:
"""
Implements algorithm 21. Constructs transformations from sets of 3 points using the Gram-Schmidt algorithm.
Args:
p_neg_x_axis: [*, 3] coordinates
origin: [*, 3] coordinates used as frame origins
p_xy_plane: [*, 3] coordinates
eps: Small epsilon value
Returns:
A transformation object of shape [*]
"""
p_neg_x_axis_unbound = torch.unbind(p_neg_x_axis, dim=-1)
origin_unbound = torch.unbind(origin, dim=-1)
p_xy_plane_unbound = torch.unbind(p_xy_plane, dim=-1)
e0 = [c1 - c2 for c1, c2 in zip(origin_unbound, p_neg_x_axis_unbound)]
e1 = [c1 - c2 for c1, c2 in zip(p_xy_plane_unbound, origin_unbound)]
denom = torch.sqrt(sum(c * c for c in e0) + eps * torch.ones_like(e0[0]))
e0 = [c / denom for c in e0]
dot = sum((c1 * c2 for c1, c2 in zip(e0, e1)))
e1 = [c2 - c1 * dot for c1, c2 in zip(e0, e1)]
denom = torch.sqrt(sum((c * c for c in e1)) + eps * torch.ones_like(e1[0]))
e1 = [c / denom for c in e1]
e2 = [
e0[1] * e1[2] - e0[2] * e1[1],
e0[2] * e1[0] - e0[0] * e1[2],
e0[0] * e1[1] - e0[1] * e1[0],
]
rots = torch.stack([c for tup in zip(e0, e1, e2) for c in tup], dim=-1)
rots = rots.reshape(rots.shape[:-1] + (3, 3))
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, torch.stack(origin_unbound, dim=-1))
def unsqueeze(self, dim: int) -> Rigid:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shared dimensions of the rotation/translation.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed transformation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
rots = self._rots.unsqueeze(dim)
trans = self._trans.unsqueeze(dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
@staticmethod
def cat(ts: Sequence[Rigid], dim: int) -> Rigid:
"""
Concatenates transformations along a new dimension.
Args:
ts:
A list of T objects
dim:
The dimension along which the transformations should be concatenated
Returns:
A concatenated transformation object
"""
rots = Rotation.cat([t._rots for t in ts], dim)
trans = torch.cat([t._trans for t in ts], dim=dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
def apply_rot_fn(self, fn: Callable[[Rotation], Rotation]) -> Rigid:
"""
Applies a Rotation -> Rotation function to the stored rotation object.
Args:
fn: A function of type Rotation -> Rotation
Returns:
A transformation object with a transformed rotation.
"""
return Rigid(fn(self._rots), self._trans)
def apply_trans_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Applies a Tensor -> Tensor function to the stored translation.
Args:
fn:
A function of type Tensor -> Tensor to be applied to the translation
Returns:
A transformation object with a transformed translation.
"""
return Rigid(self._rots, fn(self._trans))
def scale_translation(self, trans_scale_factor: float) -> Rigid:
"""
Scales the translation by a constant factor.
Args:
trans_scale_factor:
The constant factor
Returns:
A transformation object with a scaled translation.
"""
return self.apply_trans_fn(lambda t: t * trans_scale_factor)
def stop_rot_gradient(self) -> Rigid:
"""
Detaches the underlying rotation object
Returns:
A transformation object with detached rotations
"""
return self.apply_rot_fn(lambda r: r.detach())
@staticmethod
def make_transform_from_reference(
n_xyz: torch.Tensor, ca_xyz: torch.Tensor, c_xyz: torch.Tensor, eps: float = 1e-20
) -> Rigid:
"""
Returns a transformation object from reference coordinates.
Note that this method does not take care of symmetries. If you provide the atom positions in the non-standard
way, the N atom will end up not at [-0.527250, 1.359329, 0.0] but instead at [-0.527250, -1.359329, 0.0]. You
need to take care of such cases in your code.
Args:
n_xyz: A [*, 3] tensor of nitrogen xyz coordinates.
ca_xyz: A [*, 3] tensor of carbon alpha xyz coordinates.
c_xyz: A [*, 3] tensor of carbon xyz coordinates.
Returns:
A transformation object. After applying the translation and rotation to the reference backbone, the
coordinates will approximately equal to the input coordinates.
"""
translation = -1 * ca_xyz
n_xyz = n_xyz + translation
c_xyz = c_xyz + translation
c_x, c_y, c_z = [c_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + c_x**2 + c_y**2)
sin_c1 = -c_y / norm
cos_c1 = c_x / norm
c1_rots = sin_c1.new_zeros((*sin_c1.shape, 3, 3))
c1_rots[..., 0, 0] = cos_c1
c1_rots[..., 0, 1] = -1 * sin_c1
c1_rots[..., 1, 0] = sin_c1
c1_rots[..., 1, 1] = cos_c1
c1_rots[..., 2, 2] = 1
norm = torch.sqrt(eps + c_x**2 + c_y**2 + c_z**2)
sin_c2 = c_z / norm
cos_c2 = torch.sqrt(c_x**2 + c_y**2) / norm
c2_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
c2_rots[..., 0, 0] = cos_c2
c2_rots[..., 0, 2] = sin_c2
c2_rots[..., 1, 1] = 1
c2_rots[..., 2, 0] = -1 * sin_c2
c2_rots[..., 2, 2] = cos_c2
c_rots = rot_matmul(c2_rots, c1_rots)
n_xyz = rot_vec_mul(c_rots, n_xyz)
_, n_y, n_z = [n_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + n_y**2 + n_z**2)
sin_n = -n_z / norm
cos_n = n_y / norm
n_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
n_rots[..., 0, 0] = 1
n_rots[..., 1, 1] = cos_n
n_rots[..., 1, 2] = -1 * sin_n
n_rots[..., 2, 1] = sin_n
n_rots[..., 2, 2] = cos_n
rots = rot_matmul(n_rots, c_rots)
rots = rots.transpose(-1, -2)
translation = -1 * translation
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, translation)
def cuda(self) -> Rigid:
"""
Moves the transformation object to GPU memory
Returns:
A version of the transformation on GPU
"""
return Rigid(self._rots.cuda(), self._trans.cuda())
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/data_transforms.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict
import numpy as np
import torch
from . import residue_constants as rc
from .tensor_utils import tensor_tree_map, tree_map
def make_atom14_masks(protein: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]:
"""Construct denser atom positions (14 dimensions instead of 37)."""
restype_atom14_to_atom37_list = []
restype_atom37_to_atom14_list = []
restype_atom14_mask_list = []
for rt in rc.restypes:
atom_names = rc.restype_name_to_atom14_names[rc.restype_1to3[rt]]
restype_atom14_to_atom37_list.append([(rc.atom_order[name] if name else 0) for name in atom_names])
atom_name_to_idx14 = {name: i for i, name in enumerate(atom_names)}
restype_atom37_to_atom14_list.append(
[(atom_name_to_idx14[name] if name in atom_name_to_idx14 else 0) for name in rc.atom_types]
)
restype_atom14_mask_list.append([(1.0 if name else 0.0) for name in atom_names])
# Add dummy mapping for restype 'UNK'
restype_atom14_to_atom37_list.append([0] * 14)
restype_atom37_to_atom14_list.append([0] * 37)
restype_atom14_mask_list.append([0.0] * 14)
restype_atom14_to_atom37 = torch.tensor(
restype_atom14_to_atom37_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom37_to_atom14 = torch.tensor(
restype_atom37_to_atom14_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom14_mask = torch.tensor(
restype_atom14_mask_list,
dtype=torch.float32,
device=protein["aatype"].device,
)
protein_aatype = protein["aatype"].to(torch.long)
# create the mapping for (residx, atom14) --> atom37, i.e. an array
# with shape (num_res, 14) containing the atom37 indices for this protein
residx_atom14_to_atom37 = restype_atom14_to_atom37[protein_aatype]
residx_atom14_mask = restype_atom14_mask[protein_aatype]
protein["atom14_atom_exists"] = residx_atom14_mask
protein["residx_atom14_to_atom37"] = residx_atom14_to_atom37.long()
# create the gather indices for mapping back
residx_atom37_to_atom14 = restype_atom37_to_atom14[protein_aatype]
protein["residx_atom37_to_atom14"] = residx_atom37_to_atom14.long()
# create the corresponding mask
restype_atom37_mask = torch.zeros([21, 37], dtype=torch.float32, device=protein["aatype"].device)
for restype, restype_letter in enumerate(rc.restypes):
restype_name = rc.restype_1to3[restype_letter]
atom_names = rc.residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = rc.atom_order[atom_name]
restype_atom37_mask[restype, atom_type] = 1
residx_atom37_mask = restype_atom37_mask[protein_aatype]
protein["atom37_atom_exists"] = residx_atom37_mask
return protein
def make_atom14_masks_np(batch: Dict[str, torch.Tensor]) -> Dict[str, np.ndarray]:
batch = tree_map(lambda n: torch.tensor(n, device=batch["aatype"].device), batch, np.ndarray)
out = tensor_tree_map(lambda t: np.array(t), make_atom14_masks(batch))
return out
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/feats.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Tuple, overload
import torch
import torch.types
from torch import nn
from . import residue_constants as rc
from .rigid_utils import Rigid, Rotation
from .tensor_utils import batched_gather
@overload
def pseudo_beta_fn(aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: None) -> torch.Tensor: ...
@overload
def pseudo_beta_fn(
aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: torch.Tensor
) -> Tuple[torch.Tensor, torch.Tensor]: ...
def pseudo_beta_fn(aatype, all_atom_positions, all_atom_masks):
is_gly = aatype == rc.restype_order["G"]
ca_idx = rc.atom_order["CA"]
cb_idx = rc.atom_order["CB"]
pseudo_beta = torch.where(
is_gly[..., None].expand(*((-1,) * len(is_gly.shape)), 3),
all_atom_positions[..., ca_idx, :],
all_atom_positions[..., cb_idx, :],
)
if all_atom_masks is not None:
pseudo_beta_mask = torch.where(
is_gly,
all_atom_masks[..., ca_idx],
all_atom_masks[..., cb_idx],
)
return pseudo_beta, pseudo_beta_mask
else:
return pseudo_beta
def atom14_to_atom37(atom14: torch.Tensor, batch: Dict[str, torch.Tensor]) -> torch.Tensor:
atom37_data = batched_gather(
atom14,
batch["residx_atom37_to_atom14"],
dim=-2,
no_batch_dims=len(atom14.shape[:-2]),
)
atom37_data = atom37_data * batch["atom37_atom_exists"][..., None]
return atom37_data
def build_template_angle_feat(template_feats: Dict[str, torch.Tensor]) -> torch.Tensor:
template_aatype = template_feats["template_aatype"]
torsion_angles_sin_cos = template_feats["template_torsion_angles_sin_cos"]
alt_torsion_angles_sin_cos = template_feats["template_alt_torsion_angles_sin_cos"]
torsion_angles_mask = template_feats["template_torsion_angles_mask"]
template_angle_feat = torch.cat(
[
nn.functional.one_hot(template_aatype, 22),
torsion_angles_sin_cos.reshape(*torsion_angles_sin_cos.shape[:-2], 14),
alt_torsion_angles_sin_cos.reshape(*alt_torsion_angles_sin_cos.shape[:-2], 14),
torsion_angles_mask,
],
dim=-1,
)
return template_angle_feat
def build_template_pair_feat(
batch: Dict[str, torch.Tensor],
min_bin: torch.types.Number,
max_bin: torch.types.Number,
no_bins: int,
use_unit_vector: bool = False,
eps: float = 1e-20,
inf: float = 1e8,
) -> torch.Tensor:
template_mask = batch["template_pseudo_beta_mask"]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
# Compute distogram (this seems to differ slightly from Alg. 5)
tpb = batch["template_pseudo_beta"]
dgram = torch.sum((tpb[..., None, :] - tpb[..., None, :, :]) ** 2, dim=-1, keepdim=True)
lower = torch.linspace(min_bin, max_bin, no_bins, device=tpb.device) ** 2
upper = torch.cat([lower[1:], lower.new_tensor([inf])], dim=-1)
dgram = ((dgram > lower) * (dgram < upper)).type(dgram.dtype)
to_concat = [dgram, template_mask_2d[..., None]]
aatype_one_hot: torch.LongTensor = nn.functional.one_hot(
batch["template_aatype"],
rc.restype_num + 2,
)
n_res = batch["template_aatype"].shape[-1]
to_concat.append(aatype_one_hot[..., None, :, :].expand(*aatype_one_hot.shape[:-2], n_res, -1, -1))
to_concat.append(aatype_one_hot[..., None, :].expand(*aatype_one_hot.shape[:-2], -1, n_res, -1))
n, ca, c = [rc.atom_order[a] for a in ["N", "CA", "C"]]
rigids = Rigid.make_transform_from_reference(
n_xyz=batch["template_all_atom_positions"][..., n, :],
ca_xyz=batch["template_all_atom_positions"][..., ca, :],
c_xyz=batch["template_all_atom_positions"][..., c, :],
eps=eps,
)
points = rigids.get_trans()[..., None, :, :]
rigid_vec = rigids[..., None].invert_apply(points)
inv_distance_scalar = torch.rsqrt(eps + torch.sum(rigid_vec**2, dim=-1))
t_aa_masks = batch["template_all_atom_mask"]
template_mask = t_aa_masks[..., n] * t_aa_masks[..., ca] * t_aa_masks[..., c]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
inv_distance_scalar = inv_distance_scalar * template_mask_2d
unit_vector = rigid_vec * inv_distance_scalar[..., None]
if not use_unit_vector:
unit_vector = unit_vector * 0.0
to_concat.extend(torch.unbind(unit_vector[..., None, :], dim=-1))
to_concat.append(template_mask_2d[..., None])
act = torch.cat(to_concat, dim=-1)
act = act * template_mask_2d[..., None]
return act
def build_extra_msa_feat(batch: Dict[str, torch.Tensor]) -> torch.Tensor:
msa_1hot: torch.LongTensor = nn.functional.one_hot(batch["extra_msa"], 23)
msa_feat = [
msa_1hot,
batch["extra_has_deletion"].unsqueeze(-1),
batch["extra_deletion_value"].unsqueeze(-1),
]
return torch.cat(msa_feat, dim=-1)
def torsion_angles_to_frames(
r: Rigid,
alpha: torch.Tensor,
aatype: torch.Tensor,
rrgdf: torch.Tensor,
) -> Rigid:
# [*, N, 8, 4, 4]
default_4x4 = rrgdf[aatype, ...]
# [*, N, 8] transformations, i.e.
# One [*, N, 8, 3, 3] rotation matrix and
# One [*, N, 8, 3] translation matrix
default_r = r.from_tensor_4x4(default_4x4)
bb_rot = alpha.new_zeros((*((1,) * len(alpha.shape[:-1])), 2))
bb_rot[..., 1] = 1
# [*, N, 8, 2]
alpha = torch.cat([bb_rot.expand(*alpha.shape[:-2], -1, -1), alpha], dim=-2)
# [*, N, 8, 3, 3]
# Produces rotation matrices of the form:
# [
# [1, 0 , 0 ],
# [0, a_2,-a_1],
# [0, a_1, a_2]
# ]
# This follows the original code rather than the supplement, which uses
# different indices.
all_rots = alpha.new_zeros(default_r.get_rots().get_rot_mats().shape)
all_rots[..., 0, 0] = 1
all_rots[..., 1, 1] = alpha[..., 1]
all_rots[..., 1, 2] = -alpha[..., 0]
all_rots[..., 2, 1:] = alpha
all_frames = default_r.compose(Rigid(Rotation(rot_mats=all_rots), None))
chi2_frame_to_frame = all_frames[..., 5]
chi3_frame_to_frame = all_frames[..., 6]
chi4_frame_to_frame = all_frames[..., 7]
chi1_frame_to_bb = all_frames[..., 4]
chi2_frame_to_bb = chi1_frame_to_bb.compose(chi2_frame_to_frame)
chi3_frame_to_bb = chi2_frame_to_bb.compose(chi3_frame_to_frame)
chi4_frame_to_bb = chi3_frame_to_bb.compose(chi4_frame_to_frame)
all_frames_to_bb = Rigid.cat(
[
all_frames[..., :5],
chi2_frame_to_bb.unsqueeze(-1),
chi3_frame_to_bb.unsqueeze(-1),
chi4_frame_to_bb.unsqueeze(-1),
],
dim=-1,
)
all_frames_to_global = r[..., None].compose(all_frames_to_bb)
return all_frames_to_global
def frames_and_literature_positions_to_atom14_pos(
r: Rigid,
aatype: torch.Tensor,
default_frames: torch.Tensor,
group_idx: torch.Tensor,
atom_mask: torch.Tensor,
lit_positions: torch.Tensor,
) -> torch.Tensor:
# [*, N, 14]
group_mask = group_idx[aatype, ...]
# [*, N, 14, 8]
group_mask_one_hot: torch.LongTensor = nn.functional.one_hot(
group_mask,
num_classes=default_frames.shape[-3],
)
# [*, N, 14, 8]
t_atoms_to_global = r[..., None, :] * group_mask_one_hot
# [*, N, 14]
t_atoms_to_global = t_atoms_to_global.map_tensor_fn(lambda x: torch.sum(x, dim=-1))
# [*, N, 14, 1]
atom_mask = atom_mask[aatype, ...].unsqueeze(-1)
# [*, N, 14, 3]
lit_positions = lit_positions[aatype, ...]
pred_positions = t_atoms_to_global.apply(lit_positions)
pred_positions = pred_positions * atom_mask
return pred_positions
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/residue_constants.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Constants used in AlphaFold."""
import collections
import copy
import functools
from importlib import resources
from typing import Dict, List, Mapping, Sequence, Tuple
import numpy as np
# Internal import (35fd).
# Distance from one CA to next CA [trans configuration: omega = 180].
ca_ca = 3.80209737096
# Format: The list for each AA type contains chi1, chi2, chi3, chi4 in
# this order (or a relevant subset from chi1 onwards). ALA and GLY don't have
# chi angles so their chi angle lists are empty.
chi_angles_atoms: Dict[str, List[List[str]]] = {
"ALA": [],
# Chi5 in arginine is always 0 +- 5 degrees, so ignore it.
"ARG": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "NE"], ["CG", "CD", "NE", "CZ"]],
"ASN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"ASP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"CYS": [["N", "CA", "CB", "SG"]],
"GLN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLY": [],
"HIS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "ND1"]],
"ILE": [["N", "CA", "CB", "CG1"], ["CA", "CB", "CG1", "CD1"]],
"LEU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"LYS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "CE"], ["CG", "CD", "CE", "NZ"]],
"MET": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "SD"], ["CB", "CG", "SD", "CE"]],
"PHE": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"PRO": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"]],
"SER": [["N", "CA", "CB", "OG"]],
"THR": [["N", "CA", "CB", "OG1"]],
"TRP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"TYR": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"VAL": [["N", "CA", "CB", "CG1"]],
}
# If chi angles given in fixed-length array, this matrix determines how to mask
# them for each AA type. The order is as per restype_order (see below).
chi_angles_mask: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[1.0, 1.0, 1.0, 1.0], # ARG
[1.0, 1.0, 0.0, 0.0], # ASN
[1.0, 1.0, 0.0, 0.0], # ASP
[1.0, 0.0, 0.0, 0.0], # CYS
[1.0, 1.0, 1.0, 0.0], # GLN
[1.0, 1.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[1.0, 1.0, 0.0, 0.0], # HIS
[1.0, 1.0, 0.0, 0.0], # ILE
[1.0, 1.0, 0.0, 0.0], # LEU
[1.0, 1.0, 1.0, 1.0], # LYS
[1.0, 1.0, 1.0, 0.0], # MET
[1.0, 1.0, 0.0, 0.0], # PHE
[1.0, 1.0, 0.0, 0.0], # PRO
[1.0, 0.0, 0.0, 0.0], # SER
[1.0, 0.0, 0.0, 0.0], # THR
[1.0, 1.0, 0.0, 0.0], # TRP
[1.0, 1.0, 0.0, 0.0], # TYR
[1.0, 0.0, 0.0, 0.0], # VAL
]
# The following chi angles are pi periodic: they can be rotated by a multiple
# of pi without affecting the structure.
chi_pi_periodic: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[0.0, 0.0, 0.0, 0.0], # ARG
[0.0, 0.0, 0.0, 0.0], # ASN
[0.0, 1.0, 0.0, 0.0], # ASP
[0.0, 0.0, 0.0, 0.0], # CYS
[0.0, 0.0, 0.0, 0.0], # GLN
[0.0, 0.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[0.0, 0.0, 0.0, 0.0], # HIS
[0.0, 0.0, 0.0, 0.0], # ILE
[0.0, 0.0, 0.0, 0.0], # LEU
[0.0, 0.0, 0.0, 0.0], # LYS
[0.0, 0.0, 0.0, 0.0], # MET
[0.0, 1.0, 0.0, 0.0], # PHE
[0.0, 0.0, 0.0, 0.0], # PRO
[0.0, 0.0, 0.0, 0.0], # SER
[0.0, 0.0, 0.0, 0.0], # THR
[0.0, 0.0, 0.0, 0.0], # TRP
[0.0, 1.0, 0.0, 0.0], # TYR
[0.0, 0.0, 0.0, 0.0], # VAL
[0.0, 0.0, 0.0, 0.0], # UNK
]
# Atoms positions relative to the 8 rigid groups, defined by the pre-omega, phi,
# psi and chi angles:
# 0: 'backbone group',
# 1: 'pre-omega-group', (empty)
# 2: 'phi-group', (currently empty, because it defines only hydrogens)
# 3: 'psi-group',
# 4,5,6,7: 'chi1,2,3,4-group'
# The atom positions are relative to the axis-end-atom of the corresponding
# rotation axis. The x-axis is in direction of the rotation axis, and the y-axis
# is defined such that the dihedral-angle-definiting atom (the last entry in
# chi_angles_atoms above) is in the xy-plane (with a positive y-coordinate).
# format: [atomname, group_idx, rel_position]
rigid_group_atom_positions: Dict[str, List[Tuple[str, int, Tuple[float, float, float]]]] = {
"ALA": [
("N", 0, (-0.525, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.529, -0.774, -1.205)),
("O", 3, (0.627, 1.062, 0.000)),
],
"ARG": [
("N", 0, (-0.524, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.524, -0.778, -1.209)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.616, 1.390, -0.000)),
("CD", 5, (0.564, 1.414, 0.000)),
("NE", 6, (0.539, 1.357, -0.000)),
("NH1", 7, (0.206, 2.301, 0.000)),
("NH2", 7, (2.078, 0.978, -0.000)),
("CZ", 7, (0.758, 1.093, -0.000)),
],
"ASN": [
("N", 0, (-0.536, 1.357, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.531, -0.787, -1.200)),
("O", 3, (0.625, 1.062, 0.000)),
("CG", 4, (0.584, 1.399, 0.000)),
("ND2", 5, (0.593, -1.188, 0.001)),
("OD1", 5, (0.633, 1.059, 0.000)),
],
"ASP": [
("N", 0, (-0.525, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, 0.000, -0.000)),
("CB", 0, (-0.526, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.593, 1.398, -0.000)),
("OD1", 5, (0.610, 1.091, 0.000)),
("OD2", 5, (0.592, -1.101, -0.003)),
],
"CYS": [
("N", 0, (-0.522, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, 0.000)),
("CB", 0, (-0.519, -0.773, -1.212)),
("O", 3, (0.625, 1.062, -0.000)),
("SG", 4, (0.728, 1.653, 0.000)),
],
"GLN": [
("N", 0, (-0.526, 1.361, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.525, -0.779, -1.207)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.615, 1.393, 0.000)),
("CD", 5, (0.587, 1.399, -0.000)),
("NE2", 6, (0.593, -1.189, -0.001)),
("OE1", 6, (0.634, 1.060, 0.000)),
],
"GLU": [
("N", 0, (-0.528, 1.361, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.526, -0.781, -1.207)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.615, 1.392, 0.000)),
("CD", 5, (0.600, 1.397, 0.000)),
("OE1", 6, (0.607, 1.095, -0.000)),
("OE2", 6, (0.589, -1.104, -0.001)),
],
"GLY": [
("N", 0, (-0.572, 1.337, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.517, -0.000, -0.000)),
("O", 3, (0.626, 1.062, -0.000)),
],
"HIS": [
("N", 0, (-0.527, 1.360, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.525, -0.778, -1.208)),
("O", 3, (0.625, 1.063, 0.000)),
("CG", 4, (0.600, 1.370, -0.000)),
("CD2", 5, (0.889, -1.021, 0.003)),
("ND1", 5, (0.744, 1.160, -0.000)),
("CE1", 5, (2.030, 0.851, 0.002)),
("NE2", 5, (2.145, -0.466, 0.004)),
],
"ILE": [
("N", 0, (-0.493, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.536, -0.793, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.534, 1.437, -0.000)),
("CG2", 4, (0.540, -0.785, -1.199)),
("CD1", 5, (0.619, 1.391, 0.000)),
],
"LEU": [
("N", 0, (-0.520, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.522, -0.773, -1.214)),
("O", 3, (0.625, 1.063, -0.000)),
("CG", 4, (0.678, 1.371, 0.000)),
("CD1", 5, (0.530, 1.430, -0.000)),
("CD2", 5, (0.535, -0.774, 1.200)),
],
"LYS": [
("N", 0, (-0.526, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.524, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.619, 1.390, 0.000)),
("CD", 5, (0.559, 1.417, 0.000)),
("CE", 6, (0.560, 1.416, 0.000)),
("NZ", 7, (0.554, 1.387, 0.000)),
],
"MET": [
("N", 0, (-0.521, 1.364, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.210)),
("O", 3, (0.625, 1.062, -0.000)),
("CG", 4, (0.613, 1.391, -0.000)),
("SD", 5, (0.703, 1.695, 0.000)),
("CE", 6, (0.320, 1.786, -0.000)),
],
"PHE": [
("N", 0, (-0.518, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, -0.000)),
("CB", 0, (-0.525, -0.776, -1.212)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.607, 1.377, 0.000)),
("CD1", 5, (0.709, 1.195, -0.000)),
("CD2", 5, (0.706, -1.196, 0.000)),
("CE1", 5, (2.102, 1.198, -0.000)),
("CE2", 5, (2.098, -1.201, -0.000)),
("CZ", 5, (2.794, -0.003, -0.001)),
],
"PRO": [
("N", 0, (-0.566, 1.351, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, 0.000)),
("CB", 0, (-0.546, -0.611, -1.293)),
("O", 3, (0.621, 1.066, 0.000)),
("CG", 4, (0.382, 1.445, 0.0)),
# ('CD', 5, (0.427, 1.440, 0.0)),
("CD", 5, (0.477, 1.424, 0.0)), # manually made angle 2 degrees larger
],
"SER": [
("N", 0, (-0.529, 1.360, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.518, -0.777, -1.211)),
("O", 3, (0.626, 1.062, -0.000)),
("OG", 4, (0.503, 1.325, 0.000)),
],
"THR": [
("N", 0, (-0.517, 1.364, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, -0.000)),
("CB", 0, (-0.516, -0.793, -1.215)),
("O", 3, (0.626, 1.062, 0.000)),
("CG2", 4, (0.550, -0.718, -1.228)),
("OG1", 4, (0.472, 1.353, 0.000)),
],
"TRP": [
("N", 0, (-0.521, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.212)),
("O", 3, (0.627, 1.062, 0.000)),
("CG", 4, (0.609, 1.370, -0.000)),
("CD1", 5, (0.824, 1.091, 0.000)),
("CD2", 5, (0.854, -1.148, -0.005)),
("CE2", 5, (2.186, -0.678, -0.007)),
("CE3", 5, (0.622, -2.530, -0.007)),
("NE1", 5, (2.140, 0.690, -0.004)),
("CH2", 5, (3.028, -2.890, -0.013)),
("CZ2", 5, (3.283, -1.543, -0.011)),
("CZ3", 5, (1.715, -3.389, -0.011)),
],
"TYR": [
("N", 0, (-0.522, 1.362, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, -0.000, -0.000)),
("CB", 0, (-0.522, -0.776, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG", 4, (0.607, 1.382, -0.000)),
("CD1", 5, (0.716, 1.195, -0.000)),
("CD2", 5, (0.713, -1.194, -0.001)),
("CE1", 5, (2.107, 1.200, -0.002)),
("CE2", 5, (2.104, -1.201, -0.003)),
("OH", 5, (4.168, -0.002, -0.005)),
("CZ", 5, (2.791, -0.001, -0.003)),
],
"VAL": [
("N", 0, (-0.494, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.533, -0.795, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.540, 1.429, -0.000)),
("CG2", 4, (0.533, -0.776, 1.203)),
],
}
# A list of atoms (excluding hydrogen) for each AA type. PDB naming convention.
residue_atoms: Dict[str, List[str]] = {
"ALA": ["C", "CA", "CB", "N", "O"],
"ARG": ["C", "CA", "CB", "CG", "CD", "CZ", "N", "NE", "O", "NH1", "NH2"],
"ASP": ["C", "CA", "CB", "CG", "N", "O", "OD1", "OD2"],
"ASN": ["C", "CA", "CB", "CG", "N", "ND2", "O", "OD1"],
"CYS": ["C", "CA", "CB", "N", "O", "SG"],
"GLU": ["C", "CA", "CB", "CG", "CD", "N", "O", "OE1", "OE2"],
"GLN": ["C", "CA", "CB", "CG", "CD", "N", "NE2", "O", "OE1"],
"GLY": ["C", "CA", "N", "O"],
"HIS": ["C", "CA", "CB", "CG", "CD2", "CE1", "N", "ND1", "NE2", "O"],
"ILE": ["C", "CA", "CB", "CG1", "CG2", "CD1", "N", "O"],
"LEU": ["C", "CA", "CB", "CG", "CD1", "CD2", "N", "O"],
"LYS": ["C", "CA", "CB", "CG", "CD", "CE", "N", "NZ", "O"],
"MET": ["C", "CA", "CB", "CG", "CE", "N", "O", "SD"],
"PHE": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O"],
"PRO": ["C", "CA", "CB", "CG", "CD", "N", "O"],
"SER": ["C", "CA", "CB", "N", "O", "OG"],
"THR": ["C", "CA", "CB", "CG2", "N", "O", "OG1"],
"TRP": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE2", "CE3", "CZ2", "CZ3", "CH2", "N", "NE1", "O"],
"TYR": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O", "OH"],
"VAL": ["C", "CA", "CB", "CG1", "CG2", "N", "O"],
}
# Naming swaps for ambiguous atom names.
# Due to symmetries in the amino acids the naming of atoms is ambiguous in
# 4 of the 20 amino acids.
# (The LDDT paper lists 7 amino acids as ambiguous, but the naming ambiguities
# in LEU, VAL and ARG can be resolved by using the 3d constellations of
# the 'ambiguous' atoms and their neighbours)
# TODO: ^ interpret this
residue_atom_renaming_swaps: Dict[str, Dict[str, str]] = {
"ASP": {"OD1": "OD2"},
"GLU": {"OE1": "OE2"},
"PHE": {"CD1": "CD2", "CE1": "CE2"},
"TYR": {"CD1": "CD2", "CE1": "CE2"},
}
# Van der Waals radii [Angstroem] of the atoms (from Wikipedia)
van_der_waals_radius: Dict[str, float] = {
"C": 1.7,
"N": 1.55,
"O": 1.52,
"S": 1.8,
}
Bond = collections.namedtuple("Bond", ["atom1_name", "atom2_name", "length", "stddev"])
BondAngle = collections.namedtuple(
"BondAngle",
["atom1_name", "atom2_name", "atom3name", "angle_rad", "stddev"],
)
def map_structure_with_atom_order(in_list: list, first_call: bool = True) -> list:
# Maps strings in a nested list structure to their corresponding index in atom_order
if first_call:
in_list = copy.deepcopy(in_list)
for i in range(len(in_list)):
if isinstance(in_list[i], list):
in_list[i] = map_structure_with_atom_order(in_list[i], first_call=False)
elif isinstance(in_list[i], str):
in_list[i] = atom_order[in_list[i]]
else:
raise TypeError("Unexpected type when mapping nested lists!")
return in_list
@functools.lru_cache(maxsize=None)
def load_stereo_chemical_props() -> (
Tuple[
Mapping[str, List[Bond]],
Mapping[str, List[Bond]],
Mapping[str, List[BondAngle]],
]
):
"""Load stereo_chemical_props.txt into a nice structure.
Load literature values for bond lengths and bond angles and translate bond angles into the length of the opposite
edge of the triangle ("residue_virtual_bonds").
Returns:
residue_bonds: dict that maps resname --> list of Bond tuples residue_virtual_bonds: dict that maps resname -->
list of Bond tuples residue_bond_angles: dict that maps resname --> list of BondAngle tuples
"""
# TODO: this file should be downloaded in a setup script
stereo_chemical_props = resources.read_text("openfold.resources", "stereo_chemical_props.txt")
lines_iter = iter(stereo_chemical_props.splitlines())
# Load bond lengths.
residue_bonds: Dict[str, List[Bond]] = {}
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, bond_length, stddev = line.split()
atom1, atom2 = bond.split("-")
if resname not in residue_bonds:
residue_bonds[resname] = []
residue_bonds[resname].append(Bond(atom1, atom2, float(bond_length), float(stddev)))
residue_bonds["UNK"] = []
# Load bond angles.
residue_bond_angles: Dict[str, List[BondAngle]] = {}
next(lines_iter) # Skip empty line.
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, angle_degree, stddev_degree = line.split()
atom1, atom2, atom3 = bond.split("-")
if resname not in residue_bond_angles:
residue_bond_angles[resname] = []
residue_bond_angles[resname].append(
BondAngle(
atom1,
atom2,
atom3,
float(angle_degree) / 180.0 * np.pi,
float(stddev_degree) / 180.0 * np.pi,
)
)
residue_bond_angles["UNK"] = []
def make_bond_key(atom1_name: str, atom2_name: str) -> str:
"""Unique key to lookup bonds."""
return "-".join(sorted([atom1_name, atom2_name]))
# Translate bond angles into distances ("virtual bonds").
residue_virtual_bonds: Dict[str, List[Bond]] = {}
for resname, bond_angles in residue_bond_angles.items():
# Create a fast lookup dict for bond lengths.
bond_cache: Dict[str, Bond] = {}
for b in residue_bonds[resname]:
bond_cache[make_bond_key(b.atom1_name, b.atom2_name)] = b
residue_virtual_bonds[resname] = []
for ba in bond_angles:
bond1 = bond_cache[make_bond_key(ba.atom1_name, ba.atom2_name)]
bond2 = bond_cache[make_bond_key(ba.atom2_name, ba.atom3name)]
# Compute distance between atom1 and atom3 using the law of cosines
# c^2 = a^2 + b^2 - 2ab*cos(gamma).
gamma = ba.angle_rad
length = np.sqrt(bond1.length**2 + bond2.length**2 - 2 * bond1.length * bond2.length * np.cos(gamma))
# Propagation of uncertainty assuming uncorrelated errors.
dl_outer = 0.5 / length
dl_dgamma = (2 * bond1.length * bond2.length * np.sin(gamma)) * dl_outer
dl_db1 = (2 * bond1.length - 2 * bond2.length * np.cos(gamma)) * dl_outer
dl_db2 = (2 * bond2.length - 2 * bond1.length * np.cos(gamma)) * dl_outer
stddev = np.sqrt(
(dl_dgamma * ba.stddev) ** 2 + (dl_db1 * bond1.stddev) ** 2 + (dl_db2 * bond2.stddev) ** 2
)
residue_virtual_bonds[resname].append(Bond(ba.atom1_name, ba.atom3name, length, stddev))
return (residue_bonds, residue_virtual_bonds, residue_bond_angles)
# Between-residue bond lengths for general bonds (first element) and for Proline
# (second element).
between_res_bond_length_c_n: Tuple[float, float] = (1.329, 1.341)
between_res_bond_length_stddev_c_n: Tuple[float, float] = (0.014, 0.016)
# Between-residue cos_angles.
between_res_cos_angles_c_n_ca: Tuple[float, float] = (-0.5203, 0.0353) # degrees: 121.352 +- 2.315
between_res_cos_angles_ca_c_n: Tuple[float, float] = (-0.4473, 0.0311) # degrees: 116.568 +- 1.995
# This mapping is used when we need to store atom data in a format that requires
# fixed atom data size for every residue (e.g. a numpy array).
atom_types: List[str] = [
"N",
"CA",
"C",
"CB",
"O",
"CG",
"CG1",
"CG2",
"OG",
"OG1",
"SG",
"CD",
"CD1",
"CD2",
"ND1",
"ND2",
"OD1",
"OD2",
"SD",
"CE",
"CE1",
"CE2",
"CE3",
"NE",
"NE1",
"NE2",
"OE1",
"OE2",
"CH2",
"NH1",
"NH2",
"OH",
"CZ",
"CZ2",
"CZ3",
"NZ",
"OXT",
]
atom_order: Dict[str, int] = {atom_type: i for i, atom_type in enumerate(atom_types)}
atom_type_num = len(atom_types) # := 37.
# A compact atom encoding with 14 columns
# pylint: disable=line-too-long
# pylint: disable=bad-whitespace
restype_name_to_atom14_names: Dict[str, List[str]] = {
"ALA": ["N", "CA", "C", "O", "CB", "", "", "", "", "", "", "", "", ""],
"ARG": ["N", "CA", "C", "O", "CB", "CG", "CD", "NE", "CZ", "NH1", "NH2", "", "", ""],
"ASN": ["N", "CA", "C", "O", "CB", "CG", "OD1", "ND2", "", "", "", "", "", ""],
"ASP": ["N", "CA", "C", "O", "CB", "CG", "OD1", "OD2", "", "", "", "", "", ""],
"CYS": ["N", "CA", "C", "O", "CB", "SG", "", "", "", "", "", "", "", ""],
"GLN": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "NE2", "", "", "", "", ""],
"GLU": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "OE2", "", "", "", "", ""],
"GLY": ["N", "CA", "C", "O", "", "", "", "", "", "", "", "", "", ""],
"HIS": ["N", "CA", "C", "O", "CB", "CG", "ND1", "CD2", "CE1", "NE2", "", "", "", ""],
"ILE": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "CD1", "", "", "", "", "", ""],
"LEU": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "", "", "", "", "", ""],
"LYS": ["N", "CA", "C", "O", "CB", "CG", "CD", "CE", "NZ", "", "", "", "", ""],
"MET": ["N", "CA", "C", "O", "CB", "CG", "SD", "CE", "", "", "", "", "", ""],
"PHE": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "", "", ""],
"PRO": ["N", "CA", "C", "O", "CB", "CG", "CD", "", "", "", "", "", "", ""],
"SER": ["N", "CA", "C", "O", "CB", "OG", "", "", "", "", "", "", "", ""],
"THR": ["N", "CA", "C", "O", "CB", "OG1", "CG2", "", "", "", "", "", "", ""],
"TRP": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "NE1", "CE2", "CE3", "CZ2", "CZ3", "CH2"],
"TYR": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "OH", "", ""],
"VAL": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "", "", "", "", "", "", ""],
"UNK": ["", "", "", "", "", "", "", "", "", "", "", "", "", ""],
}
# pylint: enable=line-too-long
# pylint: enable=bad-whitespace
# This is the standard residue order when coding AA type as a number.
# Reproduce it by taking 3-letter AA codes and sorting them alphabetically.
restypes: List[str] = [
"A",
"R",
"N",
"D",
"C",
"Q",
"E",
"G",
"H",
"I",
"L",
"K",
"M",
"F",
"P",
"S",
"T",
"W",
"Y",
"V",
]
restype_order: Dict[str, int] = {restype: i for i, restype in enumerate(restypes)}
restype_num = len(restypes) # := 20.
unk_restype_index = restype_num # Catch-all index for unknown restypes.
restypes_with_x: List[str] = restypes + ["X"]
restype_order_with_x: Dict[str, int] = {restype: i for i, restype in enumerate(restypes_with_x)}
def sequence_to_onehot(sequence: str, mapping: Mapping[str, int], map_unknown_to_x: bool = False) -> np.ndarray:
"""Maps the given sequence into a one-hot encoded matrix.
Args:
sequence: An amino acid sequence.
mapping: A dictionary mapping amino acids to integers.
map_unknown_to_x: If True, any amino acid that is not in the mapping will be
mapped to the unknown amino acid 'X'. If the mapping doesn't contain amino acid 'X', an error will be thrown.
If False, any amino acid not in the mapping will throw an error.
Returns:
A numpy array of shape (seq_len, num_unique_aas) with one-hot encoding of the sequence.
Raises:
ValueError: If the mapping doesn't contain values from 0 to
num_unique_aas - 1 without any gaps.
"""
num_entries = max(mapping.values()) + 1
if sorted(set(mapping.values())) != list(range(num_entries)):
raise ValueError(
"The mapping must have values from 0 to num_unique_aas-1 without any gaps. Got: %s"
% sorted(mapping.values())
)
one_hot_arr = np.zeros((len(sequence), num_entries), dtype=np.int32)
for aa_index, aa_type in enumerate(sequence):
if map_unknown_to_x:
if aa_type.isalpha() and aa_type.isupper():
aa_id = mapping.get(aa_type, mapping["X"])
else:
raise ValueError(f"Invalid character in the sequence: {aa_type}")
else:
aa_id = mapping[aa_type]
one_hot_arr[aa_index, aa_id] = 1
return one_hot_arr
restype_1to3: Dict[str, str] = {
"A": "ALA",
"R": "ARG",
"N": "ASN",
"D": "ASP",
"C": "CYS",
"Q": "GLN",
"E": "GLU",
"G": "GLY",
"H": "HIS",
"I": "ILE",
"L": "LEU",
"K": "LYS",
"M": "MET",
"F": "PHE",
"P": "PRO",
"S": "SER",
"T": "THR",
"W": "TRP",
"Y": "TYR",
"V": "VAL",
}
# NB: restype_3to1 differs from Bio.PDB.protein_letters_3to1 by being a simple
# 1-to-1 mapping of 3 letter names to one letter names. The latter contains
# many more, and less common, three letter names as keys and maps many of these
# to the same one letter name (including 'X' and 'U' which we don't use here).
restype_3to1: Dict[str, str] = {v: k for k, v in restype_1to3.items()}
# Define a restype name for all unknown residues.
unk_restype = "UNK"
resnames: List[str] = [restype_1to3[r] for r in restypes] + [unk_restype]
resname_to_idx: Dict[str, int] = {resname: i for i, resname in enumerate(resnames)}
# The mapping here uses hhblits convention, so that B is mapped to D, J and O
# are mapped to X, U is mapped to C, and Z is mapped to E. Other than that the
# remaining 20 amino acids are kept in alphabetical order.
# There are 2 non-amino acid codes, X (representing any amino acid) and
# "-" representing a missing amino acid in an alignment. The id for these
# codes is put at the end (20 and 21) so that they can easily be ignored if
# desired.
HHBLITS_AA_TO_ID: Dict[str, int] = {
"A": 0,
"B": 2,
"C": 1,
"D": 2,
"E": 3,
"F": 4,
"G": 5,
"H": 6,
"I": 7,
"J": 20,
"K": 8,
"L": 9,
"M": 10,
"N": 11,
"O": 20,
"P": 12,
"Q": 13,
"R": 14,
"S": 15,
"T": 16,
"U": 1,
"V": 17,
"W": 18,
"X": 20,
"Y": 19,
"Z": 3,
"-": 21,
}
# Partial inversion of HHBLITS_AA_TO_ID.
ID_TO_HHBLITS_AA: Dict[int, str] = {
0: "A",
1: "C", # Also U.
2: "D", # Also B.
3: "E", # Also Z.
4: "F",
5: "G",
6: "H",
7: "I",
8: "K",
9: "L",
10: "M",
11: "N",
12: "P",
13: "Q",
14: "R",
15: "S",
16: "T",
17: "V",
18: "W",
19: "Y",
20: "X", # Includes J and O.
21: "-",
}
restypes_with_x_and_gap: List[str] = restypes + ["X", "-"]
MAP_HHBLITS_AATYPE_TO_OUR_AATYPE: Tuple[int, ...] = tuple(
restypes_with_x_and_gap.index(ID_TO_HHBLITS_AA[i]) for i in range(len(restypes_with_x_and_gap))
)
def _make_standard_atom_mask() -> np.ndarray:
"""Returns [num_res_types, num_atom_types] mask array."""
# +1 to account for unknown (all 0s).
mask = np.zeros([restype_num + 1, atom_type_num], dtype=np.int32)
for restype, restype_letter in enumerate(restypes):
restype_name = restype_1to3[restype_letter]
atom_names = residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = atom_order[atom_name]
mask[restype, atom_type] = 1
return mask
STANDARD_ATOM_MASK = _make_standard_atom_mask()
# A one hot representation for the first and second atoms defining the axis
# of rotation for each chi-angle in each residue.
def chi_angle_atom(atom_index: int) -> np.ndarray:
"""Define chi-angle rigid groups via one-hot representations."""
chi_angles_index = {}
one_hots = []
for k, v in chi_angles_atoms.items():
indices = [atom_types.index(s[atom_index]) for s in v]
indices.extend([-1] * (4 - len(indices)))
chi_angles_index[k] = indices
for r in restypes:
res3 = restype_1to3[r]
one_hot = np.eye(atom_type_num)[chi_angles_index[res3]]
one_hots.append(one_hot)
one_hots.append(np.zeros([4, atom_type_num])) # Add zeros for residue `X`.
one_hot = np.stack(one_hots, axis=0)
one_hot = np.transpose(one_hot, [0, 2, 1])
return one_hot
chi_atom_1_one_hot = chi_angle_atom(1)
chi_atom_2_one_hot = chi_angle_atom(2)
# An array like chi_angles_atoms but using indices rather than names.
chi_angles_atom_indices_list: List[List[List[str]]] = [chi_angles_atoms[restype_1to3[r]] for r in restypes]
chi_angles_atom_indices_ours: list = map_structure_with_atom_order(chi_angles_atom_indices_list)
chi_angles_atom_indices = np.array(
[chi_atoms + ([[0, 0, 0, 0]] * (4 - len(chi_atoms))) for chi_atoms in chi_angles_atom_indices_list]
)
# Mapping from (res_name, atom_name) pairs to the atom's chi group index
# and atom index within that group.
chi_groups_for_atom: Dict[Tuple[str, str], List[Tuple[int, int]]] = collections.defaultdict(list)
for res_name, chi_angle_atoms_for_res in chi_angles_atoms.items():
for chi_group_i, chi_group in enumerate(chi_angle_atoms_for_res):
for atom_i, atom in enumerate(chi_group):
chi_groups_for_atom[(res_name, atom)].append((chi_group_i, atom_i))
chi_groups_for_atom = dict(chi_groups_for_atom)
def _make_rigid_transformation_4x4(ex: np.ndarray, ey: np.ndarray, translation: np.ndarray) -> np.ndarray:
"""Create a rigid 4x4 transformation matrix from two axes and transl."""
# Normalize ex.
ex_normalized = ex / np.linalg.norm(ex)
# make ey perpendicular to ex
ey_normalized = ey - np.dot(ey, ex_normalized) * ex_normalized
ey_normalized /= np.linalg.norm(ey_normalized)
# compute ez as cross product
eznorm = np.cross(ex_normalized, ey_normalized)
m = np.stack([ex_normalized, ey_normalized, eznorm, translation]).transpose()
m = np.concatenate([m, [[0.0, 0.0, 0.0, 1.0]]], axis=0)
return m
# create an array with (restype, atomtype) --> rigid_group_idx
# and an array with (restype, atomtype, coord) for the atom positions
# and compute affine transformation matrices (4,4) from one rigid group to the
# previous group
restype_atom37_to_rigid_group = np.zeros([21, 37], dtype=int)
restype_atom37_mask = np.zeros([21, 37], dtype=np.float32)
restype_atom37_rigid_group_positions = np.zeros([21, 37, 3], dtype=np.float32)
restype_atom14_to_rigid_group = np.zeros([21, 14], dtype=int)
restype_atom14_mask = np.zeros([21, 14], dtype=np.float32)
restype_atom14_rigid_group_positions = np.zeros([21, 14, 3], dtype=np.float32)
restype_rigid_group_default_frame = np.zeros([21, 8, 4, 4], dtype=np.float32)
def _make_rigid_group_constants() -> None:
"""Fill the arrays above."""
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
for atomname, group_idx, atom_position in rigid_group_atom_positions[resname]:
atomtype = atom_order[atomname]
restype_atom37_to_rigid_group[restype, atomtype] = group_idx
restype_atom37_mask[restype, atomtype] = 1
restype_atom37_rigid_group_positions[restype, atomtype, :] = atom_position
atom14idx = restype_name_to_atom14_names[resname].index(atomname)
restype_atom14_to_rigid_group[restype, atom14idx] = group_idx
restype_atom14_mask[restype, atom14idx] = 1
restype_atom14_rigid_group_positions[restype, atom14idx, :] = atom_position
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_positions: Dict[str, np.ndarray] = {
name: np.array(pos) for name, _, pos in rigid_group_atom_positions[resname]
}
# backbone to backbone is the identity transform
restype_rigid_group_default_frame[restype, 0, :, :] = np.eye(4)
# pre-omega-frame to backbone (currently dummy identity matrix)
restype_rigid_group_default_frame[restype, 1, :, :] = np.eye(4)
# phi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["N"] - atom_positions["CA"],
ey=np.array([1.0, 0.0, 0.0]),
translation=atom_positions["N"],
)
restype_rigid_group_default_frame[restype, 2, :, :] = mat
# psi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["C"] - atom_positions["CA"],
ey=atom_positions["CA"] - atom_positions["N"],
translation=atom_positions["C"],
)
restype_rigid_group_default_frame[restype, 3, :, :] = mat
# chi1-frame to backbone
if chi_angles_mask[restype][0]:
base_atom_names = chi_angles_atoms[resname][0]
base_atom_positions = [atom_positions[name] for name in base_atom_names]
mat = _make_rigid_transformation_4x4(
ex=base_atom_positions[2] - base_atom_positions[1],
ey=base_atom_positions[0] - base_atom_positions[1],
translation=base_atom_positions[2],
)
restype_rigid_group_default_frame[restype, 4, :, :] = mat
# chi2-frame to chi1-frame
# chi3-frame to chi2-frame
# chi4-frame to chi3-frame
# luckily all rotation axes for the next frame start at (0,0,0) of the
# previous frame
for chi_idx in range(1, 4):
if chi_angles_mask[restype][chi_idx]:
axis_end_atom_name = chi_angles_atoms[resname][chi_idx][2]
axis_end_atom_position = atom_positions[axis_end_atom_name]
mat = _make_rigid_transformation_4x4(
ex=axis_end_atom_position,
ey=np.array([-1.0, 0.0, 0.0]),
translation=axis_end_atom_position,
)
restype_rigid_group_default_frame[restype, 4 + chi_idx, :, :] = mat
_make_rigid_group_constants()
def make_atom14_dists_bounds(
overlap_tolerance: float = 1.5,
bond_length_tolerance_factor: int = 15,
) -> Dict[str, np.ndarray]:
"""compute upper and lower bounds for bonds to assess violations."""
restype_atom14_bond_lower_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_upper_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_stddev = np.zeros([21, 14, 14], np.float32)
residue_bonds, residue_virtual_bonds, _ = load_stereo_chemical_props()
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_list = restype_name_to_atom14_names[resname]
# create lower and upper bounds for clashes
for atom1_idx, atom1_name in enumerate(atom_list):
if not atom1_name:
continue
atom1_radius = van_der_waals_radius[atom1_name[0]]
for atom2_idx, atom2_name in enumerate(atom_list):
if (not atom2_name) or atom1_idx == atom2_idx:
continue
atom2_radius = van_der_waals_radius[atom2_name[0]]
lower = atom1_radius + atom2_radius - overlap_tolerance
upper = 1e10
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
# overwrite lower and upper bounds for bonds and angles
for b in residue_bonds[resname] + residue_virtual_bonds[resname]:
atom1_idx = atom_list.index(b.atom1_name)
atom2_idx = atom_list.index(b.atom2_name)
lower = b.length - bond_length_tolerance_factor * b.stddev
upper = b.length + bond_length_tolerance_factor * b.stddev
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
restype_atom14_bond_stddev[restype, atom1_idx, atom2_idx] = b.stddev
restype_atom14_bond_stddev[restype, atom2_idx, atom1_idx] = b.stddev
return {
"lower_bound": restype_atom14_bond_lower_bound, # shape (21,14,14)
"upper_bound": restype_atom14_bond_upper_bound, # shape (21,14,14)
"stddev": restype_atom14_bond_stddev, # shape (21,14,14)
}
restype_atom14_ambiguous_atoms = np.zeros((21, 14), dtype=np.float32)
restype_atom14_ambiguous_atoms_swap_idx: np.ndarray = np.tile(np.arange(14, dtype=int), (21, 1))
def _make_atom14_ambiguity_feats() -> None:
for res, pairs in residue_atom_renaming_swaps.items():
res_idx = restype_order[restype_3to1[res]]
for atom1, atom2 in pairs.items():
atom1_idx = restype_name_to_atom14_names[res].index(atom1)
atom2_idx = restype_name_to_atom14_names[res].index(atom2)
restype_atom14_ambiguous_atoms[res_idx, atom1_idx] = 1
restype_atom14_ambiguous_atoms[res_idx, atom2_idx] = 1
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom1_idx] = atom2_idx
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom2_idx] = atom1_idx
_make_atom14_ambiguity_feats()
def aatype_to_str_sequence(aatype: Sequence[int]) -> str:
return "".join([restypes_with_x[aatype[i]] for i in range(len(aatype))])
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/loss.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Optional, Tuple
import torch
def _calculate_bin_centers(boundaries: torch.Tensor) -> torch.Tensor:
step = boundaries[1] - boundaries[0]
bin_centers = boundaries + step / 2
bin_centers = torch.cat([bin_centers, (bin_centers[-1] + step).unsqueeze(-1)], dim=0)
return bin_centers
def _calculate_expected_aligned_error(
alignment_confidence_breaks: torch.Tensor,
aligned_distance_error_probs: torch.Tensor,
) -> Tuple[torch.Tensor, torch.Tensor]:
bin_centers = _calculate_bin_centers(alignment_confidence_breaks)
return (
torch.sum(aligned_distance_error_probs * bin_centers, dim=-1),
bin_centers[-1],
)
def compute_predicted_aligned_error(
logits: torch.Tensor,
max_bin: int = 31,
no_bins: int = 64,
**kwargs,
) -> Dict[str, torch.Tensor]:
"""Computes aligned confidence metrics from logits.
Args:
logits: [*, num_res, num_res, num_bins] the logits output from
PredictedAlignedErrorHead.
max_bin: Maximum bin value
no_bins: Number of bins
Returns:
aligned_confidence_probs: [*, num_res, num_res, num_bins] the predicted
aligned error probabilities over bins for each residue pair.
predicted_aligned_error: [*, num_res, num_res] the expected aligned distance
error for each pair of residues.
max_predicted_aligned_error: [*] the maximum predicted error possible.
"""
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
aligned_confidence_probs = torch.nn.functional.softmax(logits, dim=-1)
predicted_aligned_error, max_predicted_aligned_error = _calculate_expected_aligned_error(
alignment_confidence_breaks=boundaries,
aligned_distance_error_probs=aligned_confidence_probs,
)
return {
"aligned_confidence_probs": aligned_confidence_probs,
"predicted_aligned_error": predicted_aligned_error,
"max_predicted_aligned_error": max_predicted_aligned_error,
}
def compute_tm(
logits: torch.Tensor,
residue_weights: Optional[torch.Tensor] = None,
max_bin: int = 31,
no_bins: int = 64,
eps: float = 1e-8,
**kwargs,
) -> torch.Tensor:
if residue_weights is None:
residue_weights = logits.new_ones(logits.shape[-2])
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
bin_centers = _calculate_bin_centers(boundaries)
torch.sum(residue_weights)
n = logits.shape[-2]
clipped_n = max(n, 19)
d0 = 1.24 * (clipped_n - 15) ** (1.0 / 3) - 1.8
probs = torch.nn.functional.softmax(logits, dim=-1)
tm_per_bin = 1.0 / (1 + (bin_centers**2) / (d0**2))
predicted_tm_term = torch.sum(probs * tm_per_bin, dim=-1)
normed_residue_mask = residue_weights / (eps + residue_weights.sum())
per_alignment = torch.sum(predicted_tm_term * normed_residue_mask, dim=-1)
weighted = per_alignment * residue_weights
argmax = (weighted == torch.max(weighted)).nonzero()[0]
return per_alignment[tuple(argmax)]
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/__init__.py | from .chunk_utils import chunk_layer
from .data_transforms import make_atom14_masks
from .feats import atom14_to_atom37, frames_and_literature_positions_to_atom14_pos, torsion_angles_to_frames
from .loss import compute_predicted_aligned_error, compute_tm
from .protein import Protein as OFProtein
from .protein import to_pdb
from .rigid_utils import Rigid, Rotation
from .tensor_utils import dict_multimap, flatten_final_dims, permute_final_dims
|
0 | hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/protein.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Protein data type."""
import dataclasses
import re
import string
from typing import Any, Dict, Iterator, List, Mapping, Optional, Sequence, Tuple
import numpy as np
from . import residue_constants
FeatureDict = Mapping[str, np.ndarray]
ModelOutput = Mapping[str, Any] # Is a nested dict.
PICO_TO_ANGSTROM = 0.01
@dataclasses.dataclass(frozen=True)
class Protein:
"""Protein structure representation."""
# Cartesian coordinates of atoms in angstroms. The atom types correspond to
# residue_constants.atom_types, i.e. the first three are N, CA, CB.
atom_positions: np.ndarray # [num_res, num_atom_type, 3]
# Amino-acid type for each residue represented as an integer between 0 and
# 20, where 20 is 'X'.
aatype: np.ndarray # [num_res]
# Binary float mask to indicate presence of a particular atom. 1.0 if an atom
# is present and 0.0 if not. This should be used for loss masking.
atom_mask: np.ndarray # [num_res, num_atom_type]
# Residue index as used in PDB. It is not necessarily continuous or 0-indexed.
residue_index: np.ndarray # [num_res]
# B-factors, or temperature factors, of each residue (in sq. angstroms units),
# representing the displacement of the residue from its ground truth mean
# value.
b_factors: np.ndarray # [num_res, num_atom_type]
# Chain indices for multi-chain predictions
chain_index: Optional[np.ndarray] = None
# Optional remark about the protein. Included as a comment in output PDB
# files
remark: Optional[str] = None
# Templates used to generate this protein (prediction-only)
parents: Optional[Sequence[str]] = None
# Chain corresponding to each parent
parents_chain_index: Optional[Sequence[int]] = None
def from_proteinnet_string(proteinnet_str: str) -> Protein:
tag_re = r"(\[[A-Z]+\]\n)"
tags: List[str] = [tag.strip() for tag in re.split(tag_re, proteinnet_str) if len(tag) > 0]
groups: Iterator[Tuple[str, List[str]]] = zip(tags[0::2], [l.split("\n") for l in tags[1::2]])
atoms: List[str] = ["N", "CA", "C"]
aatype = None
atom_positions = None
atom_mask = None
for g in groups:
if "[PRIMARY]" == g[0]:
seq = g[1][0].strip()
for i in range(len(seq)):
if seq[i] not in residue_constants.restypes:
seq[i] = "X" # FIXME: strings are immutable
aatype = np.array(
[residue_constants.restype_order.get(res_symbol, residue_constants.restype_num) for res_symbol in seq]
)
elif "[TERTIARY]" == g[0]:
tertiary: List[List[float]] = []
for axis in range(3):
tertiary.append(list(map(float, g[1][axis].split())))
tertiary_np = np.array(tertiary)
atom_positions = np.zeros((len(tertiary[0]) // 3, residue_constants.atom_type_num, 3)).astype(np.float32)
for i, atom in enumerate(atoms):
atom_positions[:, residue_constants.atom_order[atom], :] = np.transpose(tertiary_np[:, i::3])
atom_positions *= PICO_TO_ANGSTROM
elif "[MASK]" == g[0]:
mask = np.array(list(map({"-": 0, "+": 1}.get, g[1][0].strip())))
atom_mask = np.zeros(
(
len(mask),
residue_constants.atom_type_num,
)
).astype(np.float32)
for i, atom in enumerate(atoms):
atom_mask[:, residue_constants.atom_order[atom]] = 1
atom_mask *= mask[..., None]
assert aatype is not None
return Protein(
atom_positions=atom_positions,
atom_mask=atom_mask,
aatype=aatype,
residue_index=np.arange(len(aatype)),
b_factors=None,
)
def get_pdb_headers(prot: Protein, chain_id: int = 0) -> List[str]:
pdb_headers: List[str] = []
remark = prot.remark
if remark is not None:
pdb_headers.append(f"REMARK {remark}")
parents = prot.parents
parents_chain_index = prot.parents_chain_index
if parents is not None and parents_chain_index is not None:
parents = [p for i, p in zip(parents_chain_index, parents) if i == chain_id]
if parents is None or len(parents) == 0:
parents = ["N/A"]
pdb_headers.append(f"PARENT {' '.join(parents)}")
return pdb_headers
def add_pdb_headers(prot: Protein, pdb_str: str) -> str:
"""Add pdb headers to an existing PDB string. Useful during multi-chain
recycling
"""
out_pdb_lines: List[str] = []
lines = pdb_str.split("\n")
remark = prot.remark
if remark is not None:
out_pdb_lines.append(f"REMARK {remark}")
parents_per_chain: List[List[str]]
if prot.parents is not None and len(prot.parents) > 0:
parents_per_chain = []
if prot.parents_chain_index is not None:
parent_dict: Dict[str, List[str]] = {}
for p, i in zip(prot.parents, prot.parents_chain_index):
parent_dict.setdefault(str(i), [])
parent_dict[str(i)].append(p)
max_idx = max([int(chain_idx) for chain_idx in parent_dict])
for i in range(max_idx + 1):
chain_parents = parent_dict.get(str(i), ["N/A"])
parents_per_chain.append(chain_parents)
else:
parents_per_chain.append(list(prot.parents))
else:
parents_per_chain = [["N/A"]]
def make_parent_line(p: Sequence[str]) -> str:
return f"PARENT {' '.join(p)}"
out_pdb_lines.append(make_parent_line(parents_per_chain[0]))
chain_counter = 0
for i, l in enumerate(lines):
if "PARENT" not in l and "REMARK" not in l:
out_pdb_lines.append(l)
if "TER" in l and "END" not in lines[i + 1]:
chain_counter += 1
if not chain_counter >= len(parents_per_chain):
chain_parents = parents_per_chain[chain_counter]
else:
chain_parents = ["N/A"]
out_pdb_lines.append(make_parent_line(chain_parents))
return "\n".join(out_pdb_lines)
def to_pdb(prot: Protein) -> str:
"""Converts a `Protein` instance to a PDB string.
Args:
prot: The protein to convert to PDB.
Returns:
PDB string.
"""
restypes = residue_constants.restypes + ["X"]
def res_1to3(r: int) -> str:
return residue_constants.restype_1to3.get(restypes[r], "UNK")
atom_types = residue_constants.atom_types
pdb_lines: List[str] = []
atom_mask = prot.atom_mask
aatype = prot.aatype
atom_positions = prot.atom_positions
residue_index = prot.residue_index.astype(np.int32)
b_factors = prot.b_factors
chain_index = prot.chain_index
if np.any(aatype > residue_constants.restype_num):
raise ValueError("Invalid aatypes.")
headers = get_pdb_headers(prot)
if len(headers) > 0:
pdb_lines.extend(headers)
n = aatype.shape[0]
atom_index = 1
prev_chain_index = 0
chain_tags = string.ascii_uppercase
chain_tag = None
# Add all atom sites.
for i in range(n):
res_name_3 = res_1to3(aatype[i])
for atom_name, pos, mask, b_factor in zip(atom_types, atom_positions[i], atom_mask[i], b_factors[i]):
if mask < 0.5:
continue
record_type = "ATOM"
name = atom_name if len(atom_name) == 4 else f" {atom_name}"
alt_loc = ""
insertion_code = ""
occupancy = 1.00
element = atom_name[0] # Protein supports only C, N, O, S, this works.
charge = ""
chain_tag = "A"
if chain_index is not None:
chain_tag = chain_tags[chain_index[i]]
# PDB is a columnar format, every space matters here!
atom_line = (
f"{record_type:<6}{atom_index:>5} {name:<4}{alt_loc:>1}"
f"{res_name_3:>3} {chain_tag:>1}"
f"{residue_index[i]:>4}{insertion_code:>1} "
f"{pos[0]:>8.3f}{pos[1]:>8.3f}{pos[2]:>8.3f}"
f"{occupancy:>6.2f}{b_factor:>6.2f} "
f"{element:>2}{charge:>2}"
)
pdb_lines.append(atom_line)
atom_index += 1
should_terminate = i == n - 1
if chain_index is not None:
if i != n - 1 and chain_index[i + 1] != prev_chain_index:
should_terminate = True
prev_chain_index = chain_index[i + 1]
if should_terminate:
# Close the chain.
chain_end = "TER"
chain_termination_line = (
f"{chain_end:<6}{atom_index:>5} {res_1to3(aatype[i]):>3} {chain_tag:>1}{residue_index[i]:>4}"
)
pdb_lines.append(chain_termination_line)
atom_index += 1
if i != n - 1:
# "prev" is a misnomer here. This happens at the beginning of
# each new chain.
pdb_lines.extend(get_pdb_headers(prot, prev_chain_index))
pdb_lines.append("END")
pdb_lines.append("")
return "\n".join(pdb_lines)
def ideal_atom_mask(prot: Protein) -> np.ndarray:
"""Computes an ideal atom mask.
`Protein.atom_mask` typically is defined according to the atoms that are reported in the PDB. This function
computes a mask according to heavy atoms that should be present in the given sequence of amino acids.
Args:
prot: `Protein` whose fields are `numpy.ndarray` objects.
Returns:
An ideal atom mask.
"""
return residue_constants.STANDARD_ATOM_MASK[prot.aatype]
def from_prediction(
features: FeatureDict,
result: ModelOutput,
b_factors: Optional[np.ndarray] = None,
chain_index: Optional[np.ndarray] = None,
remark: Optional[str] = None,
parents: Optional[Sequence[str]] = None,
parents_chain_index: Optional[Sequence[int]] = None,
) -> Protein:
"""Assembles a protein from a prediction.
Args:
features: Dictionary holding model inputs.
result: Dictionary holding model outputs.
b_factors: (Optional) B-factors to use for the protein.
chain_index: (Optional) Chain indices for multi-chain predictions
remark: (Optional) Remark about the prediction
parents: (Optional) List of template names
Returns:
A protein instance.
"""
return Protein(
aatype=features["aatype"],
atom_positions=result["final_atom_positions"],
atom_mask=result["final_atom_mask"],
residue_index=features["residue_index"] + 1,
b_factors=b_factors if b_factors is not None else np.zeros_like(result["final_atom_mask"]),
chain_index=chain_index,
remark=remark,
parents=parents,
parents_chain_index=parents_chain_index,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/regnet/convert_regnet_seer_10b_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert RegNet 10B checkpoints vissl."""
# You need to install a specific version of classy vision
# pip install git+https://github.com/FrancescoSaverioZuppichini/ClassyVision.git@convert_weights
import argparse
import json
import os
import re
from collections import OrderedDict
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from pprint import pprint
from typing import Dict, List, Tuple
import torch
import torch.nn as nn
from classy_vision.models.regnet import RegNet, RegNetParams
from huggingface_hub import hf_hub_download
from torch import Tensor
from vissl.models.model_helpers import get_trunk_forward_outputs
from transformers import AutoImageProcessor, RegNetConfig, RegNetForImageClassification, RegNetModel
from transformers.modeling_utils import PreTrainedModel
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger()
@dataclass
class Tracker:
module: nn.Module
traced: List[nn.Module] = field(default_factory=list)
handles: list = field(default_factory=list)
name2module: Dict[str, nn.Module] = field(default_factory=OrderedDict)
def _forward_hook(self, m, inputs: Tensor, outputs: Tensor, name: str):
has_not_submodules = len(list(m.modules())) == 1 or isinstance(m, nn.Conv2d) or isinstance(m, nn.BatchNorm2d)
if has_not_submodules:
self.traced.append(m)
self.name2module[name] = m
def __call__(self, x: Tensor):
for name, m in self.module.named_modules():
self.handles.append(m.register_forward_hook(partial(self._forward_hook, name=name)))
self.module(x)
[x.remove() for x in self.handles]
return self
@property
def parametrized(self):
# check the len of the state_dict keys to see if we have learnable params
return {k: v for k, v in self.name2module.items() if len(list(v.state_dict().keys())) > 0}
class FakeRegNetVisslWrapper(nn.Module):
"""
Fake wrapper for RegNet that mimics what vissl does without the need to pass a config file.
"""
def __init__(self, model: nn.Module):
super().__init__()
feature_blocks: List[Tuple[str, nn.Module]] = []
# - get the stem
feature_blocks.append(("conv1", model.stem))
# - get all the feature blocks
for k, v in model.trunk_output.named_children():
assert k.startswith("block"), f"Unexpected layer name {k}"
block_index = len(feature_blocks) + 1
feature_blocks.append((f"res{block_index}", v))
self._feature_blocks = nn.ModuleDict(feature_blocks)
def forward(self, x: Tensor):
return get_trunk_forward_outputs(
x,
out_feat_keys=None,
feature_blocks=self._feature_blocks,
)
class FakeRegNetParams(RegNetParams):
"""
Used to instantiace a RegNet model from classy vision with the same depth as the 10B one but with super small
parameters, so we can trace it in memory.
"""
def get_expanded_params(self):
return [(8, 2, 2, 8, 1.0), (8, 2, 7, 8, 1.0), (8, 2, 17, 8, 1.0), (8, 2, 1, 8, 1.0)]
def get_from_to_our_keys(model_name: str) -> Dict[str, str]:
"""
Returns a dictionary that maps from original model's key -> our implementation's keys
"""
# create our model (with small weights)
our_config = RegNetConfig(depths=[2, 7, 17, 1], hidden_sizes=[8, 8, 8, 8], groups_width=8)
if "in1k" in model_name:
our_model = RegNetForImageClassification(our_config)
else:
our_model = RegNetModel(our_config)
# create from model (with small weights)
from_model = FakeRegNetVisslWrapper(
RegNet(FakeRegNetParams(depth=27, group_width=1010, w_0=1744, w_a=620.83, w_m=2.52))
)
with torch.no_grad():
from_model = from_model.eval()
our_model = our_model.eval()
x = torch.randn((1, 3, 32, 32))
# trace both
dest_tracker = Tracker(our_model)
dest_traced = dest_tracker(x).parametrized
pprint(dest_tracker.name2module)
src_tracker = Tracker(from_model)
src_traced = src_tracker(x).parametrized
# convert the keys -> module dict to keys -> params
def to_params_dict(dict_with_modules):
params_dict = OrderedDict()
for name, module in dict_with_modules.items():
for param_name, param in module.state_dict().items():
params_dict[f"{name}.{param_name}"] = param
return params_dict
from_to_ours_keys = {}
src_state_dict = to_params_dict(src_traced)
dst_state_dict = to_params_dict(dest_traced)
for (src_key, src_param), (dest_key, dest_param) in zip(src_state_dict.items(), dst_state_dict.items()):
from_to_ours_keys[src_key] = dest_key
logger.info(f"{src_key} -> {dest_key}")
# if "in1k" was in the model_name it means it must have a classification head (was finetuned)
if "in1k" in model_name:
from_to_ours_keys["0.clf.0.weight"] = "classifier.1.weight"
from_to_ours_keys["0.clf.0.bias"] = "classifier.1.bias"
return from_to_ours_keys
def convert_weights_and_push(save_directory: Path, model_name: str = None, push_to_hub: bool = True):
filename = "imagenet-1k-id2label.json"
num_labels = 1000
repo_id = "huggingface/label-files"
num_labels = num_labels
id2label = json.loads(Path(hf_hub_download(repo_id, filename, repo_type="dataset")).read_text())
id2label = {int(k): v for k, v in id2label.items()}
id2label = id2label
label2id = {v: k for k, v in id2label.items()}
ImageNetPreTrainedConfig = partial(RegNetConfig, num_labels=num_labels, id2label=id2label, label2id=label2id)
names_to_config = {
"regnet-y-10b-seer": ImageNetPreTrainedConfig(
depths=[2, 7, 17, 1], hidden_sizes=[2020, 4040, 11110, 28280], groups_width=1010
),
# finetuned on imagenet
"regnet-y-10b-seer-in1k": ImageNetPreTrainedConfig(
depths=[2, 7, 17, 1], hidden_sizes=[2020, 4040, 11110, 28280], groups_width=1010
),
}
# add seer weights logic
def load_using_classy_vision(checkpoint_url: str) -> Tuple[Dict, Dict]:
files = torch.hub.load_state_dict_from_url(checkpoint_url, model_dir=str(save_directory), map_location="cpu")
# check if we have a head, if yes add it
model_state_dict = files["classy_state_dict"]["base_model"]["model"]
return model_state_dict["trunk"], model_state_dict["heads"]
names_to_from_model = {
"regnet-y-10b-seer": partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_regnet10B/model_iteration124500_conso.torch",
),
"regnet-y-10b-seer-in1k": partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_finetuned/seer_10b_finetuned_in1k_model_phase28_conso.torch",
),
}
from_to_ours_keys = get_from_to_our_keys(model_name)
if not (save_directory / f"{model_name}.pth").exists():
logger.info("Loading original state_dict.")
from_state_dict_trunk, from_state_dict_head = names_to_from_model[model_name]()
from_state_dict = from_state_dict_trunk
if "in1k" in model_name:
# add the head
from_state_dict = {**from_state_dict_trunk, **from_state_dict_head}
logger.info("Done!")
converted_state_dict = {}
not_used_keys = list(from_state_dict.keys())
regex = r"\.block.-part."
# this is "interesting", so the original checkpoints have `block[0,1]-part` in each key name, we remove it
for key in from_state_dict.keys():
# remove the weird "block[0,1]-part" from the key
src_key = re.sub(regex, "", key)
# now src_key from the model checkpoints is the one we got from the original model after tracing, so use it to get the correct destination key
dest_key = from_to_ours_keys[src_key]
# store the parameter with our key
converted_state_dict[dest_key] = from_state_dict[key]
not_used_keys.remove(key)
# check that all keys have been updated
assert len(not_used_keys) == 0, f"Some keys where not used {','.join(not_used_keys)}"
logger.info(f"The following keys were not used: {','.join(not_used_keys)}")
# save our state dict to disk
torch.save(converted_state_dict, save_directory / f"{model_name}.pth")
del converted_state_dict
else:
logger.info("The state_dict was already stored on disk.")
if push_to_hub:
logger.info(f"Token is {os.environ['HF_TOKEN']}")
logger.info("Loading our model.")
# create our model
our_config = names_to_config[model_name]
our_model_func = RegNetModel
if "in1k" in model_name:
our_model_func = RegNetForImageClassification
our_model = our_model_func(our_config)
# place our model to the meta device (so remove all the weights)
our_model.to(torch.device("meta"))
logger.info("Loading state_dict in our model.")
# load state dict
state_dict_keys = our_model.state_dict().keys()
PreTrainedModel._load_pretrained_model_low_mem(
our_model, state_dict_keys, [save_directory / f"{model_name}.pth"]
)
logger.info("Finally, pushing!")
# push it to hub
our_model.push_to_hub(
repo_path_or_name=save_directory / model_name,
commit_message="Add model",
output_dir=save_directory / model_name,
)
size = 384
# we can use the convnext one
image_processor = AutoImageProcessor.from_pretrained("facebook/convnext-base-224-22k-1k", size=size)
image_processor.push_to_hub(
repo_path_or_name=save_directory / model_name,
commit_message="Add image processor",
output_dir=save_directory / model_name,
)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_name",
default=None,
type=str,
help=(
"The name of the model you wish to convert, it must be one of the supported regnet* architecture,"
" currently: regnetx-*, regnety-*. If `None`, all of them will the converted."
),
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=Path,
required=True,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--push_to_hub",
default=True,
type=bool,
required=False,
help="If True, push model and image processor to the hub.",
)
args = parser.parse_args()
pytorch_dump_folder_path: Path = args.pytorch_dump_folder_path
pytorch_dump_folder_path.mkdir(exist_ok=True, parents=True)
convert_weights_and_push(pytorch_dump_folder_path, args.model_name, args.push_to_hub)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/regnet/modeling_flax_regnet.py | # coding=utf-8
# Copyright 2023 The Google Flax Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from functools import partial
from typing import Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.traverse_util import flatten_dict, unflatten_dict
from transformers import RegNetConfig
from transformers.modeling_flax_outputs import (
FlaxBaseModelOutputWithNoAttention,
FlaxBaseModelOutputWithPooling,
FlaxBaseModelOutputWithPoolingAndNoAttention,
FlaxImageClassifierOutputWithNoAttention,
)
from transformers.modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from transformers.utils import (
add_start_docstrings,
add_start_docstrings_to_model_forward,
)
REGNET_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading, saving and converting weights from PyTorch models)
This model is also a
[flax.linen.Module](https://flax.readthedocs.io/en/latest/api_reference/flax.linen/module.html) subclass. Use it as
a regular Flax linen Module and refer to the Flax documentation for all matter related to general usage and
behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`RegNetConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
REGNET_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`numpy.ndarray` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`RegNetImageProcessor.__call__`] for details.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.resnet.modeling_flax_resnet.Identity
class Identity(nn.Module):
"""Identity function."""
@nn.compact
def __call__(self, x, **kwargs):
return x
class FlaxRegNetConvLayer(nn.Module):
out_channels: int
kernel_size: int = 3
stride: int = 1
groups: int = 1
activation: Optional[str] = "relu"
dtype: jnp.dtype = jnp.float32
def setup(self):
self.convolution = nn.Conv(
self.out_channels,
kernel_size=(self.kernel_size, self.kernel_size),
strides=self.stride,
padding=self.kernel_size // 2,
feature_group_count=self.groups,
use_bias=False,
kernel_init=nn.initializers.variance_scaling(2.0, mode="fan_out", distribution="truncated_normal"),
dtype=self.dtype,
)
self.normalization = nn.BatchNorm(momentum=0.9, epsilon=1e-05, dtype=self.dtype)
self.activation_func = ACT2FN[self.activation] if self.activation is not None else Identity()
def __call__(self, hidden_state: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
hidden_state = self.convolution(hidden_state)
hidden_state = self.normalization(hidden_state, use_running_average=deterministic)
hidden_state = self.activation_func(hidden_state)
return hidden_state
class FlaxRegNetEmbeddings(nn.Module):
config: RegNetConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.embedder = FlaxRegNetConvLayer(
self.config.embedding_size,
kernel_size=3,
stride=2,
activation=self.config.hidden_act,
dtype=self.dtype,
)
def __call__(self, pixel_values: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
num_channels = pixel_values.shape[-1]
if num_channels != self.config.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
hidden_state = self.embedder(pixel_values, deterministic=deterministic)
return hidden_state
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetShortCut with ResNet->RegNet
class FlaxRegNetShortCut(nn.Module):
"""
RegNet shortcut, used to project the residual features to the correct size. If needed, it is also used to
downsample the input using `stride=2`.
"""
out_channels: int
stride: int = 2
dtype: jnp.dtype = jnp.float32
def setup(self):
self.convolution = nn.Conv(
self.out_channels,
kernel_size=(1, 1),
strides=self.stride,
use_bias=False,
kernel_init=nn.initializers.variance_scaling(2.0, mode="fan_out", distribution="truncated_normal"),
dtype=self.dtype,
)
self.normalization = nn.BatchNorm(momentum=0.9, epsilon=1e-05, dtype=self.dtype)
def __call__(self, x: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
hidden_state = self.convolution(x)
hidden_state = self.normalization(hidden_state, use_running_average=deterministic)
return hidden_state
class FlaxRegNetSELayerCollection(nn.Module):
in_channels: int
reduced_channels: int
dtype: jnp.dtype = jnp.float32
def setup(self):
self.conv_1 = nn.Conv(
self.reduced_channels,
kernel_size=(1, 1),
kernel_init=nn.initializers.variance_scaling(2.0, mode="fan_out", distribution="truncated_normal"),
dtype=self.dtype,
name="0",
) # 0 is the name used in corresponding pytorch implementation
self.conv_2 = nn.Conv(
self.in_channels,
kernel_size=(1, 1),
kernel_init=nn.initializers.variance_scaling(2.0, mode="fan_out", distribution="truncated_normal"),
dtype=self.dtype,
name="2",
) # 2 is the name used in corresponding pytorch implementation
def __call__(self, hidden_state: jnp.ndarray) -> jnp.ndarray:
hidden_state = self.conv_1(hidden_state)
hidden_state = nn.relu(hidden_state)
hidden_state = self.conv_2(hidden_state)
attention = nn.sigmoid(hidden_state)
return attention
class FlaxRegNetSELayer(nn.Module):
"""
Squeeze and Excitation layer (SE) proposed in [Squeeze-and-Excitation Networks](https://arxiv.org/abs/1709.01507).
"""
in_channels: int
reduced_channels: int
dtype: jnp.dtype = jnp.float32
def setup(self):
self.pooler = partial(nn.avg_pool, padding=((0, 0), (0, 0)))
self.attention = FlaxRegNetSELayerCollection(self.in_channels, self.reduced_channels, dtype=self.dtype)
def __call__(self, hidden_state: jnp.ndarray) -> jnp.ndarray:
pooled = self.pooler(
hidden_state,
window_shape=(hidden_state.shape[1], hidden_state.shape[2]),
strides=(hidden_state.shape[1], hidden_state.shape[2]),
)
attention = self.attention(pooled)
hidden_state = hidden_state * attention
return hidden_state
class FlaxRegNetXLayerCollection(nn.Module):
config: RegNetConfig
out_channels: int
stride: int = 1
dtype: jnp.dtype = jnp.float32
def setup(self):
groups = max(1, self.out_channels // self.config.groups_width)
self.layer = [
FlaxRegNetConvLayer(
self.out_channels,
kernel_size=1,
activation=self.config.hidden_act,
dtype=self.dtype,
name="0",
),
FlaxRegNetConvLayer(
self.out_channels,
stride=self.stride,
groups=groups,
activation=self.config.hidden_act,
dtype=self.dtype,
name="1",
),
FlaxRegNetConvLayer(
self.out_channels,
kernel_size=1,
activation=None,
dtype=self.dtype,
name="2",
),
]
def __call__(self, hidden_state: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
for layer in self.layer:
hidden_state = layer(hidden_state, deterministic=deterministic)
return hidden_state
class FlaxRegNetXLayer(nn.Module):
"""
RegNet's layer composed by three `3x3` convolutions, same as a ResNet bottleneck layer with reduction = 1.
"""
config: RegNetConfig
in_channels: int
out_channels: int
stride: int = 1
dtype: jnp.dtype = jnp.float32
def setup(self):
should_apply_shortcut = self.in_channels != self.out_channels or self.stride != 1
self.shortcut = (
FlaxRegNetShortCut(
self.out_channels,
stride=self.stride,
dtype=self.dtype,
)
if should_apply_shortcut
else Identity()
)
self.layer = FlaxRegNetXLayerCollection(
self.config,
in_channels=self.in_channels,
out_channels=self.out_channels,
stride=self.stride,
dtype=self.dtype,
)
self.activation_func = ACT2FN[self.config.hidden_act]
def __call__(self, hidden_state: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
residual = hidden_state
hidden_state = self.layer(hidden_state)
residual = self.shortcut(residual, deterministic=deterministic)
hidden_state += residual
hidden_state = self.activation_func(hidden_state)
return hidden_state
class FlaxRegNetYLayerCollection(nn.Module):
config: RegNetConfig
in_channels: int
out_channels: int
stride: int = 1
dtype: jnp.dtype = jnp.float32
def setup(self):
groups = max(1, self.out_channels // self.config.groups_width)
self.layer = [
FlaxRegNetConvLayer(
self.out_channels,
kernel_size=1,
activation=self.config.hidden_act,
dtype=self.dtype,
name="0",
),
FlaxRegNetConvLayer(
self.out_channels,
stride=self.stride,
groups=groups,
activation=self.config.hidden_act,
dtype=self.dtype,
name="1",
),
FlaxRegNetSELayer(
self.out_channels,
reduced_channels=int(round(self.in_channels / 4)),
dtype=self.dtype,
name="2",
),
FlaxRegNetConvLayer(
self.out_channels,
kernel_size=1,
activation=None,
dtype=self.dtype,
name="3",
),
]
def __call__(self, hidden_state: jnp.ndarray) -> jnp.ndarray:
for layer in self.layer:
hidden_state = layer(hidden_state)
return hidden_state
class FlaxRegNetYLayer(nn.Module):
"""
RegNet's Y layer: an X layer with Squeeze and Excitation.
"""
config: RegNetConfig
in_channels: int
out_channels: int
stride: int = 1
dtype: jnp.dtype = jnp.float32
def setup(self):
should_apply_shortcut = self.in_channels != self.out_channels or self.stride != 1
self.shortcut = (
FlaxRegNetShortCut(
self.out_channels,
stride=self.stride,
dtype=self.dtype,
)
if should_apply_shortcut
else Identity()
)
self.layer = FlaxRegNetYLayerCollection(
self.config,
in_channels=self.in_channels,
out_channels=self.out_channels,
stride=self.stride,
dtype=self.dtype,
)
self.activation_func = ACT2FN[self.config.hidden_act]
def __call__(self, hidden_state: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
residual = hidden_state
hidden_state = self.layer(hidden_state)
residual = self.shortcut(residual, deterministic=deterministic)
hidden_state += residual
hidden_state = self.activation_func(hidden_state)
return hidden_state
class FlaxRegNetStageLayersCollection(nn.Module):
"""
A RegNet stage composed by stacked layers.
"""
config: RegNetConfig
in_channels: int
out_channels: int
stride: int = 2
depth: int = 2
dtype: jnp.dtype = jnp.float32
def setup(self):
layer = FlaxRegNetXLayer if self.config.layer_type == "x" else FlaxRegNetYLayer
layers = [
# downsampling is done in the first layer with stride of 2
layer(
self.config,
self.in_channels,
self.out_channels,
stride=self.stride,
dtype=self.dtype,
name="0",
)
]
for i in range(self.depth - 1):
layers.append(
layer(
self.config,
self.out_channels,
self.out_channels,
dtype=self.dtype,
name=str(i + 1),
)
)
self.layers = layers
def __call__(self, x: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
hidden_state = x
for layer in self.layers:
hidden_state = layer(hidden_state, deterministic=deterministic)
return hidden_state
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetStage with ResNet->RegNet
class FlaxRegNetStage(nn.Module):
"""
A RegNet stage composed by stacked layers.
"""
config: RegNetConfig
in_channels: int
out_channels: int
stride: int = 2
depth: int = 2
dtype: jnp.dtype = jnp.float32
def setup(self):
self.layers = FlaxRegNetStageLayersCollection(
self.config,
in_channels=self.in_channels,
out_channels=self.out_channels,
stride=self.stride,
depth=self.depth,
dtype=self.dtype,
)
def __call__(self, x: jnp.ndarray, deterministic: bool = True) -> jnp.ndarray:
return self.layers(x, deterministic=deterministic)
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetStageCollection with ResNet->RegNet
class FlaxRegNetStageCollection(nn.Module):
config: RegNetConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
in_out_channels = zip(self.config.hidden_sizes, self.config.hidden_sizes[1:])
stages = [
FlaxRegNetStage(
self.config,
self.config.embedding_size,
self.config.hidden_sizes[0],
stride=2 if self.config.downsample_in_first_stage else 1,
depth=self.config.depths[0],
dtype=self.dtype,
name="0",
)
]
for i, ((in_channels, out_channels), depth) in enumerate(zip(in_out_channels, self.config.depths[1:])):
stages.append(
FlaxRegNetStage(self.config, in_channels, out_channels, depth=depth, dtype=self.dtype, name=str(i + 1))
)
self.stages = stages
def __call__(
self,
hidden_state: jnp.ndarray,
output_hidden_states: bool = False,
deterministic: bool = True,
) -> FlaxBaseModelOutputWithNoAttention:
hidden_states = () if output_hidden_states else None
for stage_module in self.stages:
if output_hidden_states:
hidden_states = hidden_states + (hidden_state.transpose(0, 3, 1, 2),)
hidden_state = stage_module(hidden_state, deterministic=deterministic)
return hidden_state, hidden_states
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetEncoder with ResNet->RegNet
class FlaxRegNetEncoder(nn.Module):
config: RegNetConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.stages = FlaxRegNetStageCollection(self.config, dtype=self.dtype)
def __call__(
self,
hidden_state: jnp.ndarray,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
) -> FlaxBaseModelOutputWithNoAttention:
hidden_state, hidden_states = self.stages(
hidden_state, output_hidden_states=output_hidden_states, deterministic=deterministic
)
if output_hidden_states:
hidden_states = hidden_states + (hidden_state.transpose(0, 3, 1, 2),)
if not return_dict:
return tuple(v for v in [hidden_state, hidden_states] if v is not None)
return FlaxBaseModelOutputWithNoAttention(
last_hidden_state=hidden_state,
hidden_states=hidden_states,
)
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetPreTrainedModel with ResNet->RegNet,resnet->regnet,RESNET->REGNET
class FlaxRegNetPreTrainedModel(FlaxPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = RegNetConfig
base_model_prefix = "regnet"
main_input_name = "pixel_values"
module_class: nn.Module = None
def __init__(
self,
config: RegNetConfig,
input_shape=(1, 224, 224, 3),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
if input_shape is None:
input_shape = (1, config.image_size, config.image_size, config.num_channels)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
pixel_values = jnp.zeros(input_shape, dtype=self.dtype)
rngs = {"params": rng}
random_params = self.module.init(rngs, pixel_values, return_dict=False)
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
@add_start_docstrings_to_model_forward(REGNET_INPUTS_DOCSTRING)
def __call__(
self,
pixel_values,
params: dict = None,
train: bool = False,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
pixel_values = jnp.transpose(pixel_values, (0, 2, 3, 1))
# Handle any PRNG if needed
rngs = {}
return self.module.apply(
{
"params": params["params"] if params is not None else self.params["params"],
"batch_stats": params["batch_stats"] if params is not None else self.params["batch_stats"],
},
jnp.array(pixel_values, dtype=jnp.float32),
not train,
output_hidden_states,
return_dict,
rngs=rngs,
mutable=["batch_stats"] if train else False, # Returing tuple with batch_stats only when train is True
)
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetModule with ResNet->RegNet
class FlaxRegNetModule(nn.Module):
config: RegNetConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.embedder = FlaxRegNetEmbeddings(self.config, dtype=self.dtype)
self.encoder = FlaxRegNetEncoder(self.config, dtype=self.dtype)
# Adaptive average pooling used in resnet
self.pooler = partial(
nn.avg_pool,
padding=((0, 0), (0, 0)),
)
def __call__(
self,
pixel_values,
deterministic: bool = True,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> FlaxBaseModelOutputWithPoolingAndNoAttention:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
embedding_output = self.embedder(pixel_values, deterministic=deterministic)
encoder_outputs = self.encoder(
embedding_output,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
last_hidden_state = encoder_outputs[0]
pooled_output = self.pooler(
last_hidden_state,
window_shape=(last_hidden_state.shape[1], last_hidden_state.shape[2]),
strides=(last_hidden_state.shape[1], last_hidden_state.shape[2]),
).transpose(0, 3, 1, 2)
last_hidden_state = last_hidden_state.transpose(0, 3, 1, 2)
if not return_dict:
return (last_hidden_state, pooled_output) + encoder_outputs[1:]
return FlaxBaseModelOutputWithPoolingAndNoAttention(
last_hidden_state=last_hidden_state,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
)
@add_start_docstrings(
"The bare RegNet model outputting raw features without any specific head on top.",
REGNET_START_DOCSTRING,
)
class FlaxRegNetModel(FlaxRegNetPreTrainedModel):
module_class = FlaxRegNetModule
FLAX_VISION_MODEL_DOCSTRING = """
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, FlaxRegNetModel
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/regnet-y-040")
>>> model = FlaxRegNetModel.from_pretrained("facebook/regnet-y-040")
>>> inputs = image_processor(images=image, return_tensors="np")
>>> outputs = model(**inputs)
>>> last_hidden_states = outputs.last_hidden_state
```
"""
overwrite_call_docstring(FlaxRegNetModel, FLAX_VISION_MODEL_DOCSTRING)
append_replace_return_docstrings(
FlaxRegNetModel,
output_type=FlaxBaseModelOutputWithPooling,
config_class=RegNetConfig,
)
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetClassifierCollection with ResNet->RegNet
class FlaxRegNetClassifierCollection(nn.Module):
config: RegNetConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.classifier = nn.Dense(self.config.num_labels, dtype=self.dtype, name="1")
def __call__(self, x: jnp.ndarray) -> jnp.ndarray:
return self.classifier(x)
# Copied from transformers.models.resnet.modeling_flax_resnet.FlaxResNetForImageClassificationModule with ResNet->RegNet,resnet->regnet,RESNET->REGNET
class FlaxRegNetForImageClassificationModule(nn.Module):
config: RegNetConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.regnet = FlaxRegNetModule(config=self.config, dtype=self.dtype)
if self.config.num_labels > 0:
self.classifier = FlaxRegNetClassifierCollection(self.config, dtype=self.dtype)
else:
self.classifier = Identity()
def __call__(
self,
pixel_values=None,
deterministic: bool = True,
output_hidden_states=None,
return_dict=None,
):
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.regnet(
pixel_values,
deterministic=deterministic,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs.pooler_output if return_dict else outputs[1]
logits = self.classifier(pooled_output[:, :, 0, 0])
if not return_dict:
output = (logits,) + outputs[2:]
return output
return FlaxImageClassifierOutputWithNoAttention(logits=logits, hidden_states=outputs.hidden_states)
@add_start_docstrings(
"""
RegNet Model with an image classification head on top (a linear layer on top of the pooled features), e.g. for
ImageNet.
""",
REGNET_START_DOCSTRING,
)
class FlaxRegNetForImageClassification(FlaxRegNetPreTrainedModel):
module_class = FlaxRegNetForImageClassificationModule
FLAX_VISION_CLASSIF_DOCSTRING = """
Returns:
Example:
```python
>>> from transformers import AutoImageProcessor, FlaxRegNetForImageClassification
>>> from PIL import Image
>>> import jax
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/regnet-y-040")
>>> model = FlaxRegNetForImageClassification.from_pretrained("facebook/regnet-y-040")
>>> inputs = image_processor(images=image, return_tensors="np")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_class_idx = jax.numpy.argmax(logits, axis=-1)
>>> print("Predicted class:", model.config.id2label[predicted_class_idx.item()])
```
"""
overwrite_call_docstring(FlaxRegNetForImageClassification, FLAX_VISION_CLASSIF_DOCSTRING)
append_replace_return_docstrings(
FlaxRegNetForImageClassification,
output_type=FlaxImageClassifierOutputWithNoAttention,
config_class=RegNetConfig,
)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/regnet/configuration_regnet.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""RegNet model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class RegNetConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`RegNetModel`]. It is used to instantiate a RegNet
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the RegNet
[facebook/regnet-y-040](https://huggingface.co/facebook/regnet-y-040) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
embedding_size (`int`, *optional*, defaults to 64):
Dimensionality (hidden size) for the embedding layer.
hidden_sizes (`List[int]`, *optional*, defaults to `[256, 512, 1024, 2048]`):
Dimensionality (hidden size) at each stage.
depths (`List[int]`, *optional*, defaults to `[3, 4, 6, 3]`):
Depth (number of layers) for each stage.
layer_type (`str`, *optional*, defaults to `"y"`):
The layer to use, it can be either `"x" or `"y"`. An `x` layer is a ResNet's BottleNeck layer with
`reduction` fixed to `1`. While a `y` layer is a `x` but with squeeze and excitation. Please refer to the
paper for a detailed explanation of how these layers were constructed.
hidden_act (`str`, *optional*, defaults to `"relu"`):
The non-linear activation function in each block. If string, `"gelu"`, `"relu"`, `"selu"` and `"gelu_new"`
are supported.
downsample_in_first_stage (`bool`, *optional*, defaults to `False`):
If `True`, the first stage will downsample the inputs using a `stride` of 2.
Example:
```python
>>> from transformers import RegNetConfig, RegNetModel
>>> # Initializing a RegNet regnet-y-40 style configuration
>>> configuration = RegNetConfig()
>>> # Initializing a model from the regnet-y-40 style configuration
>>> model = RegNetModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```
"""
model_type = "regnet"
layer_types = ["x", "y"]
def __init__(
self,
num_channels=3,
embedding_size=32,
hidden_sizes=[128, 192, 512, 1088],
depths=[2, 6, 12, 2],
groups_width=64,
layer_type="y",
hidden_act="relu",
**kwargs,
):
super().__init__(**kwargs)
if layer_type not in self.layer_types:
raise ValueError(f"layer_type={layer_type} is not one of {','.join(self.layer_types)}")
self.num_channels = num_channels
self.embedding_size = embedding_size
self.hidden_sizes = hidden_sizes
self.depths = depths
self.groups_width = groups_width
self.layer_type = layer_type
self.hidden_act = hidden_act
# always downsample in the first stage
self.downsample_in_first_stage = True
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/regnet/modeling_tf_regnet.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TensorFlow RegNet model."""
from typing import Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import ACT2FN
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_tf_outputs import (
TFBaseModelOutputWithNoAttention,
TFBaseModelOutputWithPoolingAndNoAttention,
TFSequenceClassifierOutput,
)
from ...modeling_tf_utils import (
TFPreTrainedModel,
TFSequenceClassificationLoss,
keras,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list
from ...utils import logging
from .configuration_regnet import RegNetConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "RegNetConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "facebook/regnet-y-040"
_EXPECTED_OUTPUT_SHAPE = [1, 1088, 7, 7]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "facebook/regnet-y-040"
_IMAGE_CLASS_EXPECTED_OUTPUT = "tabby, tabby cat"
class TFRegNetConvLayer(keras.layers.Layer):
def __init__(
self,
in_channels: int,
out_channels: int,
kernel_size: int = 3,
stride: int = 1,
groups: int = 1,
activation: Optional[str] = "relu",
**kwargs,
):
super().__init__(**kwargs)
# The padding and conv has been verified in
# https://colab.research.google.com/gist/sayakpaul/854bc10eeaf21c9ee2119e0b9f3841a7/scratchpad.ipynb
self.padding = keras.layers.ZeroPadding2D(padding=kernel_size // 2)
self.convolution = keras.layers.Conv2D(
filters=out_channels,
kernel_size=kernel_size,
strides=stride,
padding="VALID",
groups=groups,
use_bias=False,
name="convolution",
)
self.normalization = keras.layers.BatchNormalization(epsilon=1e-5, momentum=0.9, name="normalization")
self.activation = ACT2FN[activation] if activation is not None else tf.identity
self.in_channels = in_channels
self.out_channels = out_channels
def call(self, hidden_state):
hidden_state = self.convolution(self.padding(hidden_state))
hidden_state = self.normalization(hidden_state)
hidden_state = self.activation(hidden_state)
return hidden_state
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "convolution", None) is not None:
with tf.name_scope(self.convolution.name):
self.convolution.build([None, None, None, self.in_channels])
if getattr(self, "normalization", None) is not None:
with tf.name_scope(self.normalization.name):
self.normalization.build([None, None, None, self.out_channels])
class TFRegNetEmbeddings(keras.layers.Layer):
"""
RegNet Embeddings (stem) composed of a single aggressive convolution.
"""
def __init__(self, config: RegNetConfig, **kwargs):
super().__init__(**kwargs)
self.num_channels = config.num_channels
self.embedder = TFRegNetConvLayer(
in_channels=config.num_channels,
out_channels=config.embedding_size,
kernel_size=3,
stride=2,
activation=config.hidden_act,
name="embedder",
)
def call(self, pixel_values):
num_channels = shape_list(pixel_values)[1]
if tf.executing_eagerly() and num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
# When running on CPU, `keras.layers.Conv2D` doesn't support `NCHW` format.
# So change the input format from `NCHW` to `NHWC`.
# shape = (batch_size, in_height, in_width, in_channels=num_channels)
pixel_values = tf.transpose(pixel_values, perm=(0, 2, 3, 1))
hidden_state = self.embedder(pixel_values)
return hidden_state
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embedder", None) is not None:
with tf.name_scope(self.embedder.name):
self.embedder.build(None)
class TFRegNetShortCut(keras.layers.Layer):
"""
RegNet shortcut, used to project the residual features to the correct size. If needed, it is also used to
downsample the input using `stride=2`.
"""
def __init__(self, in_channels: int, out_channels: int, stride: int = 2, **kwargs):
super().__init__(**kwargs)
self.convolution = keras.layers.Conv2D(
filters=out_channels, kernel_size=1, strides=stride, use_bias=False, name="convolution"
)
self.normalization = keras.layers.BatchNormalization(epsilon=1e-5, momentum=0.9, name="normalization")
self.in_channels = in_channels
self.out_channels = out_channels
def call(self, inputs: tf.Tensor, training: bool = False) -> tf.Tensor:
return self.normalization(self.convolution(inputs), training=training)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "convolution", None) is not None:
with tf.name_scope(self.convolution.name):
self.convolution.build([None, None, None, self.in_channels])
if getattr(self, "normalization", None) is not None:
with tf.name_scope(self.normalization.name):
self.normalization.build([None, None, None, self.out_channels])
class TFRegNetSELayer(keras.layers.Layer):
"""
Squeeze and Excitation layer (SE) proposed in [Squeeze-and-Excitation Networks](https://arxiv.org/abs/1709.01507).
"""
def __init__(self, in_channels: int, reduced_channels: int, **kwargs):
super().__init__(**kwargs)
self.pooler = keras.layers.GlobalAveragePooling2D(keepdims=True, name="pooler")
self.attention = [
keras.layers.Conv2D(filters=reduced_channels, kernel_size=1, activation="relu", name="attention.0"),
keras.layers.Conv2D(filters=in_channels, kernel_size=1, activation="sigmoid", name="attention.2"),
]
self.in_channels = in_channels
self.reduced_channels = reduced_channels
def call(self, hidden_state):
# [batch_size, h, w, num_channels] -> [batch_size, 1, 1, num_channels]
pooled = self.pooler(hidden_state)
for layer_module in self.attention:
pooled = layer_module(pooled)
hidden_state = hidden_state * pooled
return hidden_state
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "pooler", None) is not None:
with tf.name_scope(self.pooler.name):
self.pooler.build((None, None, None, None))
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention[0].name):
self.attention[0].build([None, None, None, self.in_channels])
with tf.name_scope(self.attention[1].name):
self.attention[1].build([None, None, None, self.reduced_channels])
class TFRegNetXLayer(keras.layers.Layer):
"""
RegNet's layer composed by three `3x3` convolutions, same as a ResNet bottleneck layer with reduction = 1.
"""
def __init__(self, config: RegNetConfig, in_channels: int, out_channels: int, stride: int = 1, **kwargs):
super().__init__(**kwargs)
should_apply_shortcut = in_channels != out_channels or stride != 1
groups = max(1, out_channels // config.groups_width)
self.shortcut = (
TFRegNetShortCut(in_channels, out_channels, stride=stride, name="shortcut")
if should_apply_shortcut
else keras.layers.Activation("linear", name="shortcut")
)
# `self.layers` instead of `self.layer` because that is a reserved argument.
self.layers = [
TFRegNetConvLayer(in_channels, out_channels, kernel_size=1, activation=config.hidden_act, name="layer.0"),
TFRegNetConvLayer(
out_channels, out_channels, stride=stride, groups=groups, activation=config.hidden_act, name="layer.1"
),
TFRegNetConvLayer(out_channels, out_channels, kernel_size=1, activation=None, name="layer.2"),
]
self.activation = ACT2FN[config.hidden_act]
def call(self, hidden_state):
residual = hidden_state
for layer_module in self.layers:
hidden_state = layer_module(hidden_state)
residual = self.shortcut(residual)
hidden_state += residual
hidden_state = self.activation(hidden_state)
return hidden_state
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "shortcut", None) is not None:
with tf.name_scope(self.shortcut.name):
self.shortcut.build(None)
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
class TFRegNetYLayer(keras.layers.Layer):
"""
RegNet's Y layer: an X layer with Squeeze and Excitation.
"""
def __init__(self, config: RegNetConfig, in_channels: int, out_channels: int, stride: int = 1, **kwargs):
super().__init__(**kwargs)
should_apply_shortcut = in_channels != out_channels or stride != 1
groups = max(1, out_channels // config.groups_width)
self.shortcut = (
TFRegNetShortCut(in_channels, out_channels, stride=stride, name="shortcut")
if should_apply_shortcut
else keras.layers.Activation("linear", name="shortcut")
)
self.layers = [
TFRegNetConvLayer(in_channels, out_channels, kernel_size=1, activation=config.hidden_act, name="layer.0"),
TFRegNetConvLayer(
out_channels, out_channels, stride=stride, groups=groups, activation=config.hidden_act, name="layer.1"
),
TFRegNetSELayer(out_channels, reduced_channels=int(round(in_channels / 4)), name="layer.2"),
TFRegNetConvLayer(out_channels, out_channels, kernel_size=1, activation=None, name="layer.3"),
]
self.activation = ACT2FN[config.hidden_act]
def call(self, hidden_state):
residual = hidden_state
for layer_module in self.layers:
hidden_state = layer_module(hidden_state)
residual = self.shortcut(residual)
hidden_state += residual
hidden_state = self.activation(hidden_state)
return hidden_state
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "shortcut", None) is not None:
with tf.name_scope(self.shortcut.name):
self.shortcut.build(None)
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
class TFRegNetStage(keras.layers.Layer):
"""
A RegNet stage composed by stacked layers.
"""
def __init__(
self, config: RegNetConfig, in_channels: int, out_channels: int, stride: int = 2, depth: int = 2, **kwargs
):
super().__init__(**kwargs)
layer = TFRegNetXLayer if config.layer_type == "x" else TFRegNetYLayer
self.layers = [
# downsampling is done in the first layer with stride of 2
layer(config, in_channels, out_channels, stride=stride, name="layers.0"),
*[layer(config, out_channels, out_channels, name=f"layers.{i+1}") for i in range(depth - 1)],
]
def call(self, hidden_state):
for layer_module in self.layers:
hidden_state = layer_module(hidden_state)
return hidden_state
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
class TFRegNetEncoder(keras.layers.Layer):
def __init__(self, config: RegNetConfig, **kwargs):
super().__init__(**kwargs)
self.stages = []
# based on `downsample_in_first_stage`, the first layer of the first stage may or may not downsample the input
self.stages.append(
TFRegNetStage(
config,
config.embedding_size,
config.hidden_sizes[0],
stride=2 if config.downsample_in_first_stage else 1,
depth=config.depths[0],
name="stages.0",
)
)
in_out_channels = zip(config.hidden_sizes, config.hidden_sizes[1:])
for i, ((in_channels, out_channels), depth) in enumerate(zip(in_out_channels, config.depths[1:])):
self.stages.append(TFRegNetStage(config, in_channels, out_channels, depth=depth, name=f"stages.{i+1}"))
def call(
self, hidden_state: tf.Tensor, output_hidden_states: bool = False, return_dict: bool = True
) -> TFBaseModelOutputWithNoAttention:
hidden_states = () if output_hidden_states else None
for stage_module in self.stages:
if output_hidden_states:
hidden_states = hidden_states + (hidden_state,)
hidden_state = stage_module(hidden_state)
if output_hidden_states:
hidden_states = hidden_states + (hidden_state,)
if not return_dict:
return tuple(v for v in [hidden_state, hidden_states] if v is not None)
return TFBaseModelOutputWithNoAttention(last_hidden_state=hidden_state, hidden_states=hidden_states)
def build(self, input_shape=None):
if self.built:
return
self.built = True
for stage in self.stages:
with tf.name_scope(stage.name):
stage.build(None)
@keras_serializable
class TFRegNetMainLayer(keras.layers.Layer):
config_class = RegNetConfig
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.embedder = TFRegNetEmbeddings(config, name="embedder")
self.encoder = TFRegNetEncoder(config, name="encoder")
self.pooler = keras.layers.GlobalAveragePooling2D(keepdims=True, name="pooler")
@unpack_inputs
def call(
self,
pixel_values: tf.Tensor,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> TFBaseModelOutputWithPoolingAndNoAttention:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
embedding_output = self.embedder(pixel_values, training=training)
encoder_outputs = self.encoder(
embedding_output, output_hidden_states=output_hidden_states, return_dict=return_dict, training=training
)
last_hidden_state = encoder_outputs[0]
pooled_output = self.pooler(last_hidden_state)
# Change to NCHW output format have uniformity in the modules
pooled_output = tf.transpose(pooled_output, perm=(0, 3, 1, 2))
last_hidden_state = tf.transpose(last_hidden_state, perm=(0, 3, 1, 2))
# Change the other hidden state outputs to NCHW as well
if output_hidden_states:
hidden_states = tuple([tf.transpose(h, perm=(0, 3, 1, 2)) for h in encoder_outputs[1]])
if not return_dict:
return (last_hidden_state, pooled_output) + encoder_outputs[1:]
return TFBaseModelOutputWithPoolingAndNoAttention(
last_hidden_state=last_hidden_state,
pooler_output=pooled_output,
hidden_states=hidden_states if output_hidden_states else encoder_outputs.hidden_states,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embedder", None) is not None:
with tf.name_scope(self.embedder.name):
self.embedder.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "pooler", None) is not None:
with tf.name_scope(self.pooler.name):
self.pooler.build((None, None, None, None))
class TFRegNetPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = RegNetConfig
base_model_prefix = "regnet"
main_input_name = "pixel_values"
@property
def input_signature(self):
return {"pixel_values": tf.TensorSpec(shape=(None, self.config.num_channels, 224, 224), dtype=tf.float32)}
REGNET_START_DOCSTRING = r"""
This model is a Tensorflow
[keras.layers.Layer](https://www.tensorflow.org/api_docs/python/tf/keras/layers/Layer) sub-class. Use it as a
regular Tensorflow Module and refer to the Tensorflow documentation for all matter related to general usage and
behavior.
Parameters:
config ([`RegNetConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
REGNET_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`ConveNextImageProcessor.__call__`] for details.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare RegNet model outputting raw features without any specific head on top.",
REGNET_START_DOCSTRING,
)
class TFRegNetModel(TFRegNetPreTrainedModel):
def __init__(self, config: RegNetConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.regnet = TFRegNetMainLayer(config, name="regnet")
@unpack_inputs
@add_start_docstrings_to_model_forward(REGNET_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPoolingAndNoAttention,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def call(
self,
pixel_values: tf.Tensor,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutputWithPoolingAndNoAttention, Tuple[tf.Tensor]]:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.regnet(
pixel_values=pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
if not return_dict:
return (outputs[0],) + outputs[1:]
return TFBaseModelOutputWithPoolingAndNoAttention(
last_hidden_state=outputs.last_hidden_state,
pooler_output=outputs.pooler_output,
hidden_states=outputs.hidden_states,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "regnet", None) is not None:
with tf.name_scope(self.regnet.name):
self.regnet.build(None)
@add_start_docstrings(
"""
RegNet Model with an image classification head on top (a linear layer on top of the pooled features), e.g. for
ImageNet.
""",
REGNET_START_DOCSTRING,
)
class TFRegNetForImageClassification(TFRegNetPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config: RegNetConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.regnet = TFRegNetMainLayer(config, name="regnet")
# classification head
self.classifier = [
keras.layers.Flatten(),
keras.layers.Dense(config.num_labels, name="classifier.1") if config.num_labels > 0 else tf.identity,
]
@unpack_inputs
@add_start_docstrings_to_model_forward(REGNET_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def call(
self,
pixel_values: Optional[tf.Tensor] = None,
labels: Optional[tf.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.regnet(
pixel_values, output_hidden_states=output_hidden_states, return_dict=return_dict, training=training
)
pooled_output = outputs.pooler_output if return_dict else outputs[1]
flattened_output = self.classifier[0](pooled_output)
logits = self.classifier[1](flattened_output)
loss = None if labels is None else self.hf_compute_loss(labels=labels, logits=logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(loss=loss, logits=logits, hidden_states=outputs.hidden_states)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "regnet", None) is not None:
with tf.name_scope(self.regnet.name):
self.regnet.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier[1].name):
self.classifier[1].build([None, None, None, self.config.hidden_sizes[-1]])
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/regnet/modeling_regnet.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch RegNet model."""
import math
from typing import Optional
import torch
import torch.utils.checkpoint
from torch import Tensor, nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithNoAttention,
BaseModelOutputWithPoolingAndNoAttention,
ImageClassifierOutputWithNoAttention,
)
from ...modeling_utils import PreTrainedModel
from ...utils import logging
from .configuration_regnet import RegNetConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "RegNetConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "facebook/regnet-y-040"
_EXPECTED_OUTPUT_SHAPE = [1, 1088, 7, 7]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "facebook/regnet-y-040"
_IMAGE_CLASS_EXPECTED_OUTPUT = "tabby, tabby cat"
class RegNetConvLayer(nn.Module):
def __init__(
self,
in_channels: int,
out_channels: int,
kernel_size: int = 3,
stride: int = 1,
groups: int = 1,
activation: Optional[str] = "relu",
):
super().__init__()
self.convolution = nn.Conv2d(
in_channels,
out_channels,
kernel_size=kernel_size,
stride=stride,
padding=kernel_size // 2,
groups=groups,
bias=False,
)
self.normalization = nn.BatchNorm2d(out_channels)
self.activation = ACT2FN[activation] if activation is not None else nn.Identity()
def forward(self, hidden_state):
hidden_state = self.convolution(hidden_state)
hidden_state = self.normalization(hidden_state)
hidden_state = self.activation(hidden_state)
return hidden_state
class RegNetEmbeddings(nn.Module):
"""
RegNet Embedddings (stem) composed of a single aggressive convolution.
"""
def __init__(self, config: RegNetConfig):
super().__init__()
self.embedder = RegNetConvLayer(
config.num_channels, config.embedding_size, kernel_size=3, stride=2, activation=config.hidden_act
)
self.num_channels = config.num_channels
def forward(self, pixel_values):
num_channels = pixel_values.shape[1]
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
hidden_state = self.embedder(pixel_values)
return hidden_state
# Copied from transformers.models.resnet.modeling_resnet.ResNetShortCut with ResNet->RegNet
class RegNetShortCut(nn.Module):
"""
RegNet shortcut, used to project the residual features to the correct size. If needed, it is also used to
downsample the input using `stride=2`.
"""
def __init__(self, in_channels: int, out_channels: int, stride: int = 2):
super().__init__()
self.convolution = nn.Conv2d(in_channels, out_channels, kernel_size=1, stride=stride, bias=False)
self.normalization = nn.BatchNorm2d(out_channels)
def forward(self, input: Tensor) -> Tensor:
hidden_state = self.convolution(input)
hidden_state = self.normalization(hidden_state)
return hidden_state
class RegNetSELayer(nn.Module):
"""
Squeeze and Excitation layer (SE) proposed in [Squeeze-and-Excitation Networks](https://arxiv.org/abs/1709.01507).
"""
def __init__(self, in_channels: int, reduced_channels: int):
super().__init__()
self.pooler = nn.AdaptiveAvgPool2d((1, 1))
self.attention = nn.Sequential(
nn.Conv2d(in_channels, reduced_channels, kernel_size=1),
nn.ReLU(),
nn.Conv2d(reduced_channels, in_channels, kernel_size=1),
nn.Sigmoid(),
)
def forward(self, hidden_state):
# b c h w -> b c 1 1
pooled = self.pooler(hidden_state)
attention = self.attention(pooled)
hidden_state = hidden_state * attention
return hidden_state
class RegNetXLayer(nn.Module):
"""
RegNet's layer composed by three `3x3` convolutions, same as a ResNet bottleneck layer with reduction = 1.
"""
def __init__(self, config: RegNetConfig, in_channels: int, out_channels: int, stride: int = 1):
super().__init__()
should_apply_shortcut = in_channels != out_channels or stride != 1
groups = max(1, out_channels // config.groups_width)
self.shortcut = (
RegNetShortCut(in_channels, out_channels, stride=stride) if should_apply_shortcut else nn.Identity()
)
self.layer = nn.Sequential(
RegNetConvLayer(in_channels, out_channels, kernel_size=1, activation=config.hidden_act),
RegNetConvLayer(out_channels, out_channels, stride=stride, groups=groups, activation=config.hidden_act),
RegNetConvLayer(out_channels, out_channels, kernel_size=1, activation=None),
)
self.activation = ACT2FN[config.hidden_act]
def forward(self, hidden_state):
residual = hidden_state
hidden_state = self.layer(hidden_state)
residual = self.shortcut(residual)
hidden_state += residual
hidden_state = self.activation(hidden_state)
return hidden_state
class RegNetYLayer(nn.Module):
"""
RegNet's Y layer: an X layer with Squeeze and Excitation.
"""
def __init__(self, config: RegNetConfig, in_channels: int, out_channels: int, stride: int = 1):
super().__init__()
should_apply_shortcut = in_channels != out_channels or stride != 1
groups = max(1, out_channels // config.groups_width)
self.shortcut = (
RegNetShortCut(in_channels, out_channels, stride=stride) if should_apply_shortcut else nn.Identity()
)
self.layer = nn.Sequential(
RegNetConvLayer(in_channels, out_channels, kernel_size=1, activation=config.hidden_act),
RegNetConvLayer(out_channels, out_channels, stride=stride, groups=groups, activation=config.hidden_act),
RegNetSELayer(out_channels, reduced_channels=int(round(in_channels / 4))),
RegNetConvLayer(out_channels, out_channels, kernel_size=1, activation=None),
)
self.activation = ACT2FN[config.hidden_act]
def forward(self, hidden_state):
residual = hidden_state
hidden_state = self.layer(hidden_state)
residual = self.shortcut(residual)
hidden_state += residual
hidden_state = self.activation(hidden_state)
return hidden_state
class RegNetStage(nn.Module):
"""
A RegNet stage composed by stacked layers.
"""
def __init__(
self,
config: RegNetConfig,
in_channels: int,
out_channels: int,
stride: int = 2,
depth: int = 2,
):
super().__init__()
layer = RegNetXLayer if config.layer_type == "x" else RegNetYLayer
self.layers = nn.Sequential(
# downsampling is done in the first layer with stride of 2
layer(
config,
in_channels,
out_channels,
stride=stride,
),
*[layer(config, out_channels, out_channels) for _ in range(depth - 1)],
)
def forward(self, hidden_state):
hidden_state = self.layers(hidden_state)
return hidden_state
class RegNetEncoder(nn.Module):
def __init__(self, config: RegNetConfig):
super().__init__()
self.stages = nn.ModuleList([])
# based on `downsample_in_first_stage`, the first layer of the first stage may or may not downsample the input
self.stages.append(
RegNetStage(
config,
config.embedding_size,
config.hidden_sizes[0],
stride=2 if config.downsample_in_first_stage else 1,
depth=config.depths[0],
)
)
in_out_channels = zip(config.hidden_sizes, config.hidden_sizes[1:])
for (in_channels, out_channels), depth in zip(in_out_channels, config.depths[1:]):
self.stages.append(RegNetStage(config, in_channels, out_channels, depth=depth))
def forward(
self, hidden_state: Tensor, output_hidden_states: bool = False, return_dict: bool = True
) -> BaseModelOutputWithNoAttention:
hidden_states = () if output_hidden_states else None
for stage_module in self.stages:
if output_hidden_states:
hidden_states = hidden_states + (hidden_state,)
hidden_state = stage_module(hidden_state)
if output_hidden_states:
hidden_states = hidden_states + (hidden_state,)
if not return_dict:
return tuple(v for v in [hidden_state, hidden_states] if v is not None)
return BaseModelOutputWithNoAttention(last_hidden_state=hidden_state, hidden_states=hidden_states)
class RegNetPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = RegNetConfig
base_model_prefix = "regnet"
main_input_name = "pixel_values"
_no_split_modules = ["RegNetYLayer"]
# Copied from transformers.models.resnet.modeling_resnet.ResNetPreTrainedModel._init_weights
def _init_weights(self, module):
if isinstance(module, nn.Conv2d):
nn.init.kaiming_normal_(module.weight, mode="fan_out", nonlinearity="relu")
# copied from the `reset_parameters` method of `class Linear(Module)` in `torch`.
elif isinstance(module, nn.Linear):
nn.init.kaiming_uniform_(module.weight, a=math.sqrt(5))
if module.bias is not None:
fan_in, _ = nn.init._calculate_fan_in_and_fan_out(module.weight)
bound = 1 / math.sqrt(fan_in) if fan_in > 0 else 0
nn.init.uniform_(module.bias, -bound, bound)
elif isinstance(module, (nn.BatchNorm2d, nn.GroupNorm)):
nn.init.constant_(module.weight, 1)
nn.init.constant_(module.bias, 0)
REGNET_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matters related to general usage and
behavior.
Parameters:
config ([`RegNetConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
REGNET_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`ConvNextImageProcessor.__call__`] for details.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare RegNet model outputting raw features without any specific head on top.",
REGNET_START_DOCSTRING,
)
# Copied from transformers.models.resnet.modeling_resnet.ResNetModel with RESNET->REGNET,ResNet->RegNet
class RegNetModel(RegNetPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.embedder = RegNetEmbeddings(config)
self.encoder = RegNetEncoder(config)
self.pooler = nn.AdaptiveAvgPool2d((1, 1))
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(REGNET_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndNoAttention,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self, pixel_values: Tensor, output_hidden_states: Optional[bool] = None, return_dict: Optional[bool] = None
) -> BaseModelOutputWithPoolingAndNoAttention:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
embedding_output = self.embedder(pixel_values)
encoder_outputs = self.encoder(
embedding_output, output_hidden_states=output_hidden_states, return_dict=return_dict
)
last_hidden_state = encoder_outputs[0]
pooled_output = self.pooler(last_hidden_state)
if not return_dict:
return (last_hidden_state, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndNoAttention(
last_hidden_state=last_hidden_state,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
)
@add_start_docstrings(
"""
RegNet Model with an image classification head on top (a linear layer on top of the pooled features), e.g. for
ImageNet.
""",
REGNET_START_DOCSTRING,
)
# Copied from transformers.models.resnet.modeling_resnet.ResNetForImageClassification with RESNET->REGNET,ResNet->RegNet,resnet->regnet
class RegNetForImageClassification(RegNetPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.regnet = RegNetModel(config)
# classification head
self.classifier = nn.Sequential(
nn.Flatten(),
nn.Linear(config.hidden_sizes[-1], config.num_labels) if config.num_labels > 0 else nn.Identity(),
)
# initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(REGNET_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=ImageClassifierOutputWithNoAttention,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> ImageClassifierOutputWithNoAttention:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.regnet(pixel_values, output_hidden_states=output_hidden_states, return_dict=return_dict)
pooled_output = outputs.pooler_output if return_dict else outputs[1]
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return (loss,) + output if loss is not None else output
return ImageClassifierOutputWithNoAttention(loss=loss, logits=logits, hidden_states=outputs.hidden_states)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/regnet/convert_regnet_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert RegNet checkpoints from timm and vissl."""
import argparse
import json
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from typing import Callable, Dict, List, Tuple
import timm
import torch
import torch.nn as nn
from classy_vision.models.regnet import RegNet, RegNetParams, RegNetY32gf, RegNetY64gf, RegNetY128gf
from huggingface_hub import hf_hub_download
from torch import Tensor
from vissl.models.model_helpers import get_trunk_forward_outputs
from transformers import AutoImageProcessor, RegNetConfig, RegNetForImageClassification, RegNetModel
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger()
@dataclass
class Tracker:
module: nn.Module
traced: List[nn.Module] = field(default_factory=list)
handles: list = field(default_factory=list)
def _forward_hook(self, m, inputs: Tensor, outputs: Tensor):
has_not_submodules = len(list(m.modules())) == 1 or isinstance(m, nn.Conv2d) or isinstance(m, nn.BatchNorm2d)
if has_not_submodules:
self.traced.append(m)
def __call__(self, x: Tensor):
for m in self.module.modules():
self.handles.append(m.register_forward_hook(self._forward_hook))
self.module(x)
[x.remove() for x in self.handles]
return self
@property
def parametrized(self):
# check the len of the state_dict keys to see if we have learnable params
return list(filter(lambda x: len(list(x.state_dict().keys())) > 0, self.traced))
@dataclass
class ModuleTransfer:
src: nn.Module
dest: nn.Module
verbose: int = 1
src_skip: List = field(default_factory=list)
dest_skip: List = field(default_factory=list)
raise_if_mismatch: bool = True
def __call__(self, x: Tensor):
"""
Transfer the weights of `self.src` to `self.dest` by performing a forward pass using `x` as input. Under the
hood we tracked all the operations in both modules.
"""
dest_traced = Tracker(self.dest)(x).parametrized
src_traced = Tracker(self.src)(x).parametrized
src_traced = list(filter(lambda x: type(x) not in self.src_skip, src_traced))
dest_traced = list(filter(lambda x: type(x) not in self.dest_skip, dest_traced))
if len(dest_traced) != len(src_traced) and self.raise_if_mismatch:
raise Exception(
f"Numbers of operations are different. Source module has {len(src_traced)} operations while"
f" destination module has {len(dest_traced)}."
)
for dest_m, src_m in zip(dest_traced, src_traced):
dest_m.load_state_dict(src_m.state_dict())
if self.verbose == 1:
print(f"Transfered from={src_m} to={dest_m}")
class FakeRegNetVisslWrapper(nn.Module):
"""
Fake wrapper for RegNet that mimics what vissl does without the need to pass a config file.
"""
def __init__(self, model: nn.Module):
super().__init__()
feature_blocks: List[Tuple[str, nn.Module]] = []
# - get the stem
feature_blocks.append(("conv1", model.stem))
# - get all the feature blocks
for k, v in model.trunk_output.named_children():
assert k.startswith("block"), f"Unexpected layer name {k}"
block_index = len(feature_blocks) + 1
feature_blocks.append((f"res{block_index}", v))
self._feature_blocks = nn.ModuleDict(feature_blocks)
def forward(self, x: Tensor):
return get_trunk_forward_outputs(
x,
out_feat_keys=None,
feature_blocks=self._feature_blocks,
)
class NameToFromModelFuncMap(dict):
"""
A Dictionary with some additional logic to return a function that creates the correct original model.
"""
def convert_name_to_timm(self, x: str) -> str:
x_split = x.split("-")
return x_split[0] + x_split[1] + "_" + "".join(x_split[2:])
def __getitem__(self, x: str) -> Callable[[], Tuple[nn.Module, Dict]]:
# default to timm!
if x not in self:
x = self.convert_name_to_timm(x)
val = partial(lambda: (timm.create_model(x, pretrained=True).eval(), None))
else:
val = super().__getitem__(x)
return val
class NameToOurModelFuncMap(dict):
"""
A Dictionary with some additional logic to return the correct hugging face RegNet class reference.
"""
def __getitem__(self, x: str) -> Callable[[], nn.Module]:
if "seer" in x and "in1k" not in x:
val = RegNetModel
else:
val = RegNetForImageClassification
return val
def manually_copy_vissl_head(from_state_dict, to_state_dict, keys: List[Tuple[str, str]]):
for from_key, to_key in keys:
to_state_dict[to_key] = from_state_dict[from_key].clone()
print(f"Copied key={from_key} to={to_key}")
return to_state_dict
def convert_weight_and_push(
name: str,
from_model_func: Callable[[], nn.Module],
our_model_func: Callable[[], nn.Module],
config: RegNetConfig,
save_directory: Path,
push_to_hub: bool = True,
):
print(f"Converting {name}...")
with torch.no_grad():
from_model, from_state_dict = from_model_func()
our_model = our_model_func(config).eval()
module_transfer = ModuleTransfer(src=from_model, dest=our_model, raise_if_mismatch=False)
x = torch.randn((1, 3, 224, 224))
module_transfer(x)
if from_state_dict is not None:
keys = []
# for seer - in1k finetuned we have to manually copy the head
if "seer" in name and "in1k" in name:
keys = [("0.clf.0.weight", "classifier.1.weight"), ("0.clf.0.bias", "classifier.1.bias")]
to_state_dict = manually_copy_vissl_head(from_state_dict, our_model.state_dict(), keys)
our_model.load_state_dict(to_state_dict)
our_outputs = our_model(x, output_hidden_states=True)
our_output = (
our_outputs.logits if isinstance(our_model, RegNetForImageClassification) else our_outputs.last_hidden_state
)
from_output = from_model(x)
from_output = from_output[-1] if isinstance(from_output, list) else from_output
# now since I don't want to use any config files, vissl seer model doesn't actually have an head, so let's just check the last hidden state
if "seer" in name and "in1k" in name:
our_output = our_outputs.hidden_states[-1]
assert torch.allclose(from_output, our_output), "The model logits don't match the original one."
if push_to_hub:
our_model.push_to_hub(
repo_path_or_name=save_directory / name,
commit_message="Add model",
use_temp_dir=True,
)
size = 224 if "seer" not in name else 384
# we can use the convnext one
image_processor = AutoImageProcessor.from_pretrained("facebook/convnext-base-224-22k-1k", size=size)
image_processor.push_to_hub(
repo_path_or_name=save_directory / name,
commit_message="Add image processor",
use_temp_dir=True,
)
print(f"Pushed {name}")
def convert_weights_and_push(save_directory: Path, model_name: str = None, push_to_hub: bool = True):
filename = "imagenet-1k-id2label.json"
num_labels = 1000
expected_shape = (1, num_labels)
repo_id = "huggingface/label-files"
num_labels = num_labels
id2label = json.loads(Path(hf_hub_download(repo_id, filename, repo_type="dataset")).read_text())
id2label = {int(k): v for k, v in id2label.items()}
id2label = id2label
label2id = {v: k for k, v in id2label.items()}
ImageNetPreTrainedConfig = partial(RegNetConfig, num_labels=num_labels, id2label=id2label, label2id=label2id)
names_to_config = {
"regnet-x-002": ImageNetPreTrainedConfig(
depths=[1, 1, 4, 7], hidden_sizes=[24, 56, 152, 368], groups_width=8, layer_type="x"
),
"regnet-x-004": ImageNetPreTrainedConfig(
depths=[1, 2, 7, 12], hidden_sizes=[32, 64, 160, 384], groups_width=16, layer_type="x"
),
"regnet-x-006": ImageNetPreTrainedConfig(
depths=[1, 3, 5, 7], hidden_sizes=[48, 96, 240, 528], groups_width=24, layer_type="x"
),
"regnet-x-008": ImageNetPreTrainedConfig(
depths=[1, 3, 7, 5], hidden_sizes=[64, 128, 288, 672], groups_width=16, layer_type="x"
),
"regnet-x-016": ImageNetPreTrainedConfig(
depths=[2, 4, 10, 2], hidden_sizes=[72, 168, 408, 912], groups_width=24, layer_type="x"
),
"regnet-x-032": ImageNetPreTrainedConfig(
depths=[2, 6, 15, 2], hidden_sizes=[96, 192, 432, 1008], groups_width=48, layer_type="x"
),
"regnet-x-040": ImageNetPreTrainedConfig(
depths=[2, 5, 14, 2], hidden_sizes=[80, 240, 560, 1360], groups_width=40, layer_type="x"
),
"regnet-x-064": ImageNetPreTrainedConfig(
depths=[2, 4, 10, 1], hidden_sizes=[168, 392, 784, 1624], groups_width=56, layer_type="x"
),
"regnet-x-080": ImageNetPreTrainedConfig(
depths=[2, 5, 15, 1], hidden_sizes=[80, 240, 720, 1920], groups_width=120, layer_type="x"
),
"regnet-x-120": ImageNetPreTrainedConfig(
depths=[2, 5, 11, 1], hidden_sizes=[224, 448, 896, 2240], groups_width=112, layer_type="x"
),
"regnet-x-160": ImageNetPreTrainedConfig(
depths=[2, 6, 13, 1], hidden_sizes=[256, 512, 896, 2048], groups_width=128, layer_type="x"
),
"regnet-x-320": ImageNetPreTrainedConfig(
depths=[2, 7, 13, 1], hidden_sizes=[336, 672, 1344, 2520], groups_width=168, layer_type="x"
),
# y variant
"regnet-y-002": ImageNetPreTrainedConfig(depths=[1, 1, 4, 7], hidden_sizes=[24, 56, 152, 368], groups_width=8),
"regnet-y-004": ImageNetPreTrainedConfig(
depths=[1, 3, 6, 6], hidden_sizes=[48, 104, 208, 440], groups_width=8
),
"regnet-y-006": ImageNetPreTrainedConfig(
depths=[1, 3, 7, 4], hidden_sizes=[48, 112, 256, 608], groups_width=16
),
"regnet-y-008": ImageNetPreTrainedConfig(
depths=[1, 3, 8, 2], hidden_sizes=[64, 128, 320, 768], groups_width=16
),
"regnet-y-016": ImageNetPreTrainedConfig(
depths=[2, 6, 17, 2], hidden_sizes=[48, 120, 336, 888], groups_width=24
),
"regnet-y-032": ImageNetPreTrainedConfig(
depths=[2, 5, 13, 1], hidden_sizes=[72, 216, 576, 1512], groups_width=24
),
"regnet-y-040": ImageNetPreTrainedConfig(
depths=[2, 6, 12, 2], hidden_sizes=[128, 192, 512, 1088], groups_width=64
),
"regnet-y-064": ImageNetPreTrainedConfig(
depths=[2, 7, 14, 2], hidden_sizes=[144, 288, 576, 1296], groups_width=72
),
"regnet-y-080": ImageNetPreTrainedConfig(
depths=[2, 4, 10, 1], hidden_sizes=[168, 448, 896, 2016], groups_width=56
),
"regnet-y-120": ImageNetPreTrainedConfig(
depths=[2, 5, 11, 1], hidden_sizes=[224, 448, 896, 2240], groups_width=112
),
"regnet-y-160": ImageNetPreTrainedConfig(
depths=[2, 4, 11, 1], hidden_sizes=[224, 448, 1232, 3024], groups_width=112
),
"regnet-y-320": ImageNetPreTrainedConfig(
depths=[2, 5, 12, 1], hidden_sizes=[232, 696, 1392, 3712], groups_width=232
),
# models created by SEER -> https://arxiv.org/abs/2202.08360
"regnet-y-320-seer": RegNetConfig(depths=[2, 5, 12, 1], hidden_sizes=[232, 696, 1392, 3712], groups_width=232),
"regnet-y-640-seer": RegNetConfig(depths=[2, 5, 12, 1], hidden_sizes=[328, 984, 1968, 4920], groups_width=328),
"regnet-y-1280-seer": RegNetConfig(
depths=[2, 7, 17, 1], hidden_sizes=[528, 1056, 2904, 7392], groups_width=264
),
"regnet-y-2560-seer": RegNetConfig(
depths=[3, 7, 16, 1], hidden_sizes=[640, 1696, 2544, 5088], groups_width=640
),
"regnet-y-10b-seer": ImageNetPreTrainedConfig(
depths=[2, 7, 17, 1], hidden_sizes=[2020, 4040, 11110, 28280], groups_width=1010
),
# finetuned on imagenet
"regnet-y-320-seer-in1k": ImageNetPreTrainedConfig(
depths=[2, 5, 12, 1], hidden_sizes=[232, 696, 1392, 3712], groups_width=232
),
"regnet-y-640-seer-in1k": ImageNetPreTrainedConfig(
depths=[2, 5, 12, 1], hidden_sizes=[328, 984, 1968, 4920], groups_width=328
),
"regnet-y-1280-seer-in1k": ImageNetPreTrainedConfig(
depths=[2, 7, 17, 1], hidden_sizes=[528, 1056, 2904, 7392], groups_width=264
),
"regnet-y-2560-seer-in1k": ImageNetPreTrainedConfig(
depths=[3, 7, 16, 1], hidden_sizes=[640, 1696, 2544, 5088], groups_width=640
),
"regnet-y-10b-seer-in1k": ImageNetPreTrainedConfig(
depths=[2, 7, 17, 1], hidden_sizes=[2020, 4040, 11110, 28280], groups_width=1010
),
}
names_to_ours_model_map = NameToOurModelFuncMap()
names_to_from_model_map = NameToFromModelFuncMap()
# add seer weights logic
def load_using_classy_vision(checkpoint_url: str, model_func: Callable[[], nn.Module]) -> Tuple[nn.Module, Dict]:
files = torch.hub.load_state_dict_from_url(checkpoint_url, model_dir=str(save_directory), map_location="cpu")
model = model_func()
# check if we have a head, if yes add it
model_state_dict = files["classy_state_dict"]["base_model"]["model"]
state_dict = model_state_dict["trunk"]
model.load_state_dict(state_dict)
return model.eval(), model_state_dict["heads"]
# pretrained
names_to_from_model_map["regnet-y-320-seer"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_regnet32d/seer_regnet32gf_model_iteration244000.torch",
lambda: FakeRegNetVisslWrapper(RegNetY32gf()),
)
names_to_from_model_map["regnet-y-640-seer"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_regnet64/seer_regnet64gf_model_final_checkpoint_phase0.torch",
lambda: FakeRegNetVisslWrapper(RegNetY64gf()),
)
names_to_from_model_map["regnet-y-1280-seer"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/swav_ig1b_regnet128Gf_cnstant_bs32_node16_sinkhorn10_proto16k_syncBN64_warmup8k/model_final_checkpoint_phase0.torch",
lambda: FakeRegNetVisslWrapper(RegNetY128gf()),
)
names_to_from_model_map["regnet-y-10b-seer"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_regnet10B/model_iteration124500_conso.torch",
lambda: FakeRegNetVisslWrapper(
RegNet(RegNetParams(depth=27, group_width=1010, w_0=1744, w_a=620.83, w_m=2.52))
),
)
# IN1K finetuned
names_to_from_model_map["regnet-y-320-seer-in1k"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_finetuned/seer_regnet32_finetuned_in1k_model_final_checkpoint_phase78.torch",
lambda: FakeRegNetVisslWrapper(RegNetY32gf()),
)
names_to_from_model_map["regnet-y-640-seer-in1k"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_finetuned/seer_regnet64_finetuned_in1k_model_final_checkpoint_phase78.torch",
lambda: FakeRegNetVisslWrapper(RegNetY64gf()),
)
names_to_from_model_map["regnet-y-1280-seer-in1k"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_finetuned/seer_regnet128_finetuned_in1k_model_final_checkpoint_phase78.torch",
lambda: FakeRegNetVisslWrapper(RegNetY128gf()),
)
names_to_from_model_map["regnet-y-10b-seer-in1k"] = partial(
load_using_classy_vision,
"https://dl.fbaipublicfiles.com/vissl/model_zoo/seer_finetuned/seer_10b_finetuned_in1k_model_phase28_conso.torch",
lambda: FakeRegNetVisslWrapper(
RegNet(RegNetParams(depth=27, group_width=1010, w_0=1744, w_a=620.83, w_m=2.52))
),
)
if model_name:
convert_weight_and_push(
model_name,
names_to_from_model_map[model_name],
names_to_ours_model_map[model_name],
names_to_config[model_name],
save_directory,
push_to_hub,
)
else:
for model_name, config in names_to_config.items():
convert_weight_and_push(
model_name,
names_to_from_model_map[model_name],
names_to_ours_model_map[model_name],
config,
save_directory,
push_to_hub,
)
return config, expected_shape
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_name",
default=None,
type=str,
help=(
"The name of the model you wish to convert, it must be one of the supported regnet* architecture,"
" currently: regnetx-*, regnety-*. If `None`, all of them will the converted."
),
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=Path,
required=True,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--push_to_hub",
default=True,
type=bool,
required=False,
help="If True, push model and image processor to the hub.",
)
args = parser.parse_args()
pytorch_dump_folder_path: Path = args.pytorch_dump_folder_path
pytorch_dump_folder_path.mkdir(exist_ok=True, parents=True)
convert_weights_and_push(pytorch_dump_folder_path, args.model_name, args.push_to_hub)
|
0 | hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/regnet/__init__.py | # Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_torch_available,
)
_import_structure = {"configuration_regnet": ["RegNetConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_regnet"] = [
"RegNetForImageClassification",
"RegNetModel",
"RegNetPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_regnet"] = [
"TFRegNetForImageClassification",
"TFRegNetModel",
"TFRegNetPreTrainedModel",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_regnet"] = [
"FlaxRegNetForImageClassification",
"FlaxRegNetModel",
"FlaxRegNetPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_regnet import RegNetConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_regnet import (
RegNetForImageClassification,
RegNetModel,
RegNetPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_regnet import (
TFRegNetForImageClassification,
TFRegNetModel,
TFRegNetPreTrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_regnet import (
FlaxRegNetForImageClassification,
FlaxRegNetModel,
FlaxRegNetPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
|
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