| Unnamed: 0,Gene symbol,Ranking,Annotation & reasoning,Additional note,Gene Symbol |
| 0,NeuN,1-50,Pan Neuron marker often used for ISH,,NeuN |
| 1,SST,1-50,Defines SST+ Interneurons,,SST |
| 2,PVALB,1-50,Identifies inhibitory interneurons,,PVALB |
| 3,CLND5,1-50,Endothelial cells / Mural cells,,CLND5 |
| 4,HBA1,1-50,Endothelial cells / Mural cells,,HBA1 |
| 5,ASCA2,1-50,Astrocyte marker often used for Bead collection,,ASCA2 |
| 6,GFAP,1-50,Astrocyte marker ,,GFAP |
| 7,CX3CR1 ,1-50,Microglia marker,,CX3CR1 |
| 8,TMEM119,1-50,Microglial marker,,TMEM119 |
| 9,AIF1,1-50,IBA1 is often used for in situ hybridzation to label microglial cells. ,,AIF1 |
| 10,OLIG2,1-50,"Expressed by OPCs, getting cells ready for differentiation into myelin-forming oligodendocytes. ",,OLIG2 |
| 11,CD22,1-50,Expressed by oligodendrocytes in huamns and binds to sialic acid-dependent ligands on microglia. ,,CD22 |
| 12,Th,1-50,Often used by ISH of dopaminergic neurons. ,,Th |
| 13,Reln,1-50,"Genes that seperate layers of cortical region (Huuki-Myers, BioRxiv, 2023)",,Reln |
| 14,Aqp4,1-50,"Genes that seperate layers of cortical region (Huuki-Myers, BioRxiv, 2023)",,Aqp4 |
| 15,SPARC,1-50,"Genes that seperate layers of cortical region (Huuki-Myers, BioRxiv, 2023)",,SPARC |
| 16,HTRA1,1-50,"Genes that seperate layers of cortical region (Huuki-Myers, BioRxiv, 2023)",,HTRA1 |
| 17,VIP,1-50,Labels interneurons in PFC that signal and inhibits SST+ interneurons,,VIP |
| 18,Fos,1-50,Activation-related genes from neurons. ,,Fos |
| 19,Arc,1-50,Activation-related genes from neurons. ,,Arc |
| 20,Egr1,1-50,Activation-related genes from neurons. ,,Egr1 |
| 21,BDNF,1-50,"For survival mechanisms of neuronal homeostasis, often associated with disease. ",,BDNF |
| 22,ADORA1,1-50,Neurotransmitter receptors,,ADORA1 |
| 23,HTR1A,1-50,Neurotransmitter receptors,,HTR1A |
| 24,HTR2A,1-50,Neurotransmitter receptors,,HTR2A |
| 25,HTR3A,1-50,Neurotransmitter receptors,,HTR3A |
| 26,HTR4,1-50,Neurotransmitter receptors,,HTR4 |
| 27,DRD1,1-50,Neurotransmitter receptors,,DRD1 |
| 28,DRD2,1-50,Neurotransmitter receptors,,DRD2 |
| 29,DRD4,1-50,Neurotransmitter receptors,,DRD4 |
| 30,NR3C1,1-50,Neurotransmitter receptors,,NR3C1 |
| 31,NPY1R,1-50,Neurotransmitter receptors,,NPY1R |
| 32,OXTR,1-50,Expressed by SST+ neurons to respond to ,,OXTR |
| 33,GRIN2B,1-50,Receptors common for neural plasticity,,GRIN2B |
| 34,GABRA1,1-50,Receptors common for neural plasticity,,GABRA1 |
| 35,GRIA1,1-50,Receptors common for neural plasticity,,GRIA1 |
| 36,NEDD4,1-50,Marker for excitatory neurons,,NEDD4 |
| 37,FBXO2,1-50,Marker for excitatory neurons,,FBXO2 |
| 38,mTOR,1-50,Marker for excitatory neurons,,mTOR |
| 39,DDIT4,1-50,Marker for excitatory neurons,,DDIT4 |
| 40,TH,1-50,Marker for excitatory neurons,,TH |
| 41,PDGFRA,1-50,OPCs,,PDGFRA |
| 42,GAD1,1-50,"Glutamate Decarboxylase 1, catalyzing production from L-glut. ",,GAD1 |
| 43,CHAT,1-50,Neuron enzyme for ACh,,CHAT |
| 44,GRIN2A,1-50,NMDA receptors,,GRIN2A |
| 45,GABRD,1-50,GABA receptors,,GABRD |
| 46,GABRA1,1-50,GABA receptors,,GABRA1 |
| 47,TREM2,1-50,microglial marker,,TREM2 |
| 48,CSF1R,1-50,microglial marker,,CSF1R |
| 49,IL10,1-50,Microglia function,,IL10 |
| 50,EFNA5,50-100,Important pathways for neural plasticity and synaptic homeostasis. ,,EFNA5 |
| 51,EPHA5,50-100,Important pathways for neural plasticity and synaptic homeostasis. ,,EPHA5 |
| 52,FYN,50-100,Important pathways for neural plasticity and synaptic homeostasis. ,,FYN |
| 53,CARMN,50-100,Endothelial cells: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,CARMN |
| 54,ITIH5,50-100,Endothelial cells: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,ITIH5 |
| 55,MECOM,50-100,Endothelial cells: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,MECOM |
| 56,EBF1,50-100,Endothelial cells: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,EBF1 |
| 57,VWF,50-100,Endothelial cells: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,VWF |
| 58,LINC02712,50-100,Microglia: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,LINC02712 |
| 59,ITGAX,50-100,Microglia: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,ITGAX |
| 60,BLNK,50-100,Microglia: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,BLNK |
| 61,CSF2RA,50-100,Microglia: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,CSF2RA |
| 62,FOLH1,50-100,Oligodendrocytes: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,FOLH1 |
| 63,LINC01608,50-100,Oligodendrocytes: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,LINC01608 |
| 64,SLC5A11,50-100,Oligodendrocytes: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,SLC5A11 |
| 65,OPC,50-100,OPC: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,OPC |
| 66,AC004852.2,50-100,OPC: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,AC004852.2 |
| 67,FERMT1,50-100,OPC: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,FERMT1 |
| 68,COL9A1,50-100,OPC: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,COL9A1 |
| 69,STK32A,50-100,OPC: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,STK32A |
| 70,FGF13,50-100,Excitatory Layer 2 or 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,FGF13 |
| 71,SLC12A8,50-100,Excitatory Layer 2 or 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,SLC12A8 |
| 72,DCBLD2,50-100,Excitatory Layer 2 or 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,DCBLD2 |
| 73,MPC1,50-100,Excitatory Layer 2 or 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,MPC1 |
| 74,LINC02296,50-100,Excitatory Layer 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,LINC02296 |
| 75,AC008674.1,50-100,Excitatory Layer 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,AC008674.1 |
| 76,CLRA3,50-100,Excitatory Layer 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,CLRA3 |
| 77,CPHR1,50-100,Excitatory Layer 3: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,CPHR1 |
| 78,FBXL16,50-100,Excitatory Layer 3/4/5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,FBXL16 |
| 79,MAP1A,50-100,Excitatory Layer 3/4/5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,MAP1A |
| 80,UBB,50-100,Excitatory Layer 3/4/5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,UBB |
| 81,ENC1,50-100,Excitatory Layer 3/4/5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,ENC1 |
| 82,TSHZ2,50-100,Excitatory Layer 4 Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,TSHZ2 |
| 83,VGF,50-100,Excitatory Layer 4 Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,VGF |
| 84,UBE2E3,50-100,Excitatory Layer 4 Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,UBE2E3 |
| 85,APP003066.1,50-100,Excitatory Layer 5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,APP003066.1 |
| 86,COL12A1,50-100,Excitatory Layer 5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,COL12A1 |
| 87,TRABD2A,50-100,Excitatory Layer 5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,TRABD2A |
| 88,TLL1,50-100,Excitatory Layer 5: Top genes from Huuki-Myers that distinguishes other cell types using scNuc-seq and spatial context. ,,TLL1 |
| 89,LINC00343,50-100,Excitatory L5/6,,LINC00343 |
| 90,THEMIS,50-100,Excitatory L5/6,,THEMIS |
| 91,AC015943.1,50-100,Excitatory L5/6,,AC015943.1 |
| 92,LINC02718,50-100,Excitatory L6: Top genes from Huuki-Myers,,LINC02718 |
| 93,MCTP2,50-100,Excitatory L6: Top genes from Huuki-Myers,,MCTP2 |
| 94,AC006299.1,50-100,Excitatory L6: Top genes from Huuki-Myers,,AC006299.1 |
| 95,DPP4,50-100,Excitatory L6: Top genes from Huuki-Myers,,DPP4 |
| 96,MYO3B,50-100,Inhibitory neurons: Top genes from Huuki-Myers,,MYO3B |
| 97,SLC27A6,50-100,Inhibitory neurons: Top genes from Huuki-Myers,,SLC27A6 |
| 98,MINAR1,50-100,Inhibitory neurons: Top genes from Huuki-Myers,,MINAR1 |
| 99,BTBD11,50-100,Inhibitory neurons: Top genes from Huuki-Myers,,BTBD11 |
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