Datasets:

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hazemessam

/

deeploc-2

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 13 new columns ({'Cytoplasm', 'Membrane', 'Golgi apparatus', 'Partition', 'Extracellular', 'Endoplasmic reticulum', 'Nucleus', 'Lysosome/Vacuole', 'Peroxisome', 'Unnamed: 0', 'Plastid', 'Cell membrane', 'Mitochondrion'}) and 2 missing columns ({'AnnotEncoded', 'Types'}).

This happened while the csv dataset builder was generating data using

hf://datasets/hazemessam/deeploc-2/Swissprot_Train_Validation_dataset.csv (at revision 1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59), [/tmp/hf-datasets-cache/medium/datasets/77327706174409-config-parquet-and-info-hazemessam-deeploc-2-10038fab/hub/datasets--hazemessam--deeploc-2/snapshots/1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/SortingSignalsSwissprot.csv (origin=hf://datasets/hazemessam/deeploc-2@1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/SortingSignalsSwissprot.csv), /tmp/hf-datasets-cache/medium/datasets/77327706174409-config-parquet-and-info-hazemessam-deeploc-2-10038fab/hub/datasets--hazemessam--deeploc-2/snapshots/1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/Swissprot_Train_Validation_dataset.csv (origin=hf://datasets/hazemessam/deeploc-2@1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/Swissprot_Train_Validation_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/77327706174409-config-parquet-and-info-hazemessam-deeploc-2-10038fab/hub/datasets--hazemessam--deeploc-2/snapshots/1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/hpa_testset.csv (origin=hf://datasets/hazemessam/deeploc-2@1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/hpa_testset.csv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Unnamed: 0: int64
              ACC: string
              Kingdom: string
              Partition: int64
              Membrane: double
              Cytoplasm: double
              Nucleus: double
              Extracellular: double
              Cell membrane: double
              Mitochondrion: double
              Plastid: double
              Endoplasmic reticulum: double
              Lysosome/Vacuole: double
              Golgi apparatus: double
              Peroxisome: double
              Sequence: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 2206
              to
              {'ACC': Value('string'), 'AnnotEncoded': Value('string'), 'Kingdom': Value('string'), 'Sequence': Value('string'), 'Types': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 13 new columns ({'Cytoplasm', 'Membrane', 'Golgi apparatus', 'Partition', 'Extracellular', 'Endoplasmic reticulum', 'Nucleus', 'Lysosome/Vacuole', 'Peroxisome', 'Unnamed: 0', 'Plastid', 'Cell membrane', 'Mitochondrion'}) and 2 missing columns ({'AnnotEncoded', 'Types'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/hazemessam/deeploc-2/Swissprot_Train_Validation_dataset.csv (at revision 1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59), [/tmp/hf-datasets-cache/medium/datasets/77327706174409-config-parquet-and-info-hazemessam-deeploc-2-10038fab/hub/datasets--hazemessam--deeploc-2/snapshots/1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/SortingSignalsSwissprot.csv (origin=hf://datasets/hazemessam/deeploc-2@1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/SortingSignalsSwissprot.csv), /tmp/hf-datasets-cache/medium/datasets/77327706174409-config-parquet-and-info-hazemessam-deeploc-2-10038fab/hub/datasets--hazemessam--deeploc-2/snapshots/1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/Swissprot_Train_Validation_dataset.csv (origin=hf://datasets/hazemessam/deeploc-2@1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/Swissprot_Train_Validation_dataset.csv), /tmp/hf-datasets-cache/medium/datasets/77327706174409-config-parquet-and-info-hazemessam-deeploc-2-10038fab/hub/datasets--hazemessam--deeploc-2/snapshots/1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/hpa_testset.csv (origin=hf://datasets/hazemessam/deeploc-2@1df9ffe2cdecdcfc0bb5accc21b2c77fc1aa8a59/hpa_testset.csv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)