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diff --git a/indra/databases/__init__.py b/indra/databases/__init__.py index <HASH>..<HASH> 100644 --- a/indra/databases/__init__.py +++ b/indra/databases/__init__.py @@ -70,6 +70,11 @@ def get_identifiers_url(db_name, db_id): url = 'https://arty.scai.fraunhofer.de/artifactory/bel/namespace/selventa-protein-fa...
Added URL generation for LNCRNADB (ENSG id or HGNC symbol)
py
diff --git a/bcbio/rnaseq/salmon.py b/bcbio/rnaseq/salmon.py index <HASH>..<HASH> 100644 --- a/bcbio/rnaseq/salmon.py +++ b/bcbio/rnaseq/salmon.py @@ -26,8 +26,11 @@ def run_salmon_bam(data): out_file = salmon_quant_bam(bam_file, salmon_dir, gtf_file, data) data = dd.set_salmon(data, out_file) data = dd....
fix stalled RNA-seq runs when there is no flenDist.txt related to #<I> (#<I>)
py
diff --git a/docs/conf.py b/docs/conf.py index <HASH>..<HASH> 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -222,5 +222,5 @@ release = 'latest' print("Done.") -def setup(app): - app.connect("builder-inited", run_apidoc) +# def setup(app): +# app.connect("builder-inited", run_apidoc)
see if skipping autodoc helps
py
diff --git a/satpy/writers/cf_writer.py b/satpy/writers/cf_writer.py index <HASH>..<HASH> 100644 --- a/satpy/writers/cf_writer.py +++ b/satpy/writers/cf_writer.py @@ -226,7 +226,12 @@ def encode_nc(obj): try: return _encode_nc(obj) except ValueError: - return json.dumps(obj, cls=AttributeEncod...
Decode byte strings and remove trailing quotes
py
diff --git a/carto/sql.py b/carto/sql.py index <HASH>..<HASH> 100644 --- a/carto/sql.py +++ b/carto/sql.py @@ -115,24 +115,3 @@ class BatchSQLClient(object): """ confirmation = self.send(self.api_url + job_id, http_method="DELETE") return confirmation['status'] - - -class BatchSQLManager(obje...
removing batch manager since there's no way to retrieve all jobs this class is not needed anymor
py
diff --git a/quantrisk/timeseries.py b/quantrisk/timeseries.py index <HASH>..<HASH> 100644 --- a/quantrisk/timeseries.py +++ b/quantrisk/timeseries.py @@ -213,6 +213,15 @@ def calmer_ratio(df_rets, returns_style='calendar'): else: return temp +def omega_ratio(df_rets, annual_return_threshhold=0.0): + ...
ENH add omega_ratio to timeseries module, and include in perf_stats. Closes #<I>
py
diff --git a/cluster/juju/layers/kubernetes-master/reactive/kubernetes_master.py b/cluster/juju/layers/kubernetes-master/reactive/kubernetes_master.py index <HASH>..<HASH> 100644 --- a/cluster/juju/layers/kubernetes-master/reactive/kubernetes_master.py +++ b/cluster/juju/layers/kubernetes-master/reactive/kubernetes_mas...
The change in channels will be caught config change after the upgrade.
py
diff --git a/dumper/test/settings.py b/dumper/test/settings.py index <HASH>..<HASH> 100644 --- a/dumper/test/settings.py +++ b/dumper/test/settings.py @@ -1,3 +1,5 @@ +import django + from os import path @@ -13,8 +15,9 @@ DATABASES = { ROOT_URLCONF = 'dumper.test.urls' # Testing -INSTALLED_APPS += ('discover_r...
Only use discover runner on django<<I>
py
diff --git a/tests/cases/user_test.py b/tests/cases/user_test.py index <HASH>..<HASH> 100644 --- a/tests/cases/user_test.py +++ b/tests/cases/user_test.py @@ -462,3 +462,23 @@ class UserTestCase(base.TestCase): user=admin) self.assertStatusOk(resp) self.assertTrue(resp.jso...
Add a test to make sure admin flag can't be set for normal registration
py
diff --git a/salt/utils/reactor.py b/salt/utils/reactor.py index <HASH>..<HASH> 100644 --- a/salt/utils/reactor.py +++ b/salt/utils/reactor.py @@ -433,7 +433,19 @@ class ReactWrap(object): # and kwargs['kwarg'] contain the positional and keyword arguments # that will be passed to the client in...
Adding space to log message as requested
py
diff --git a/restless/preparers.py b/restless/preparers.py index <HASH>..<HASH> 100644 --- a/restless/preparers.py +++ b/restless/preparers.py @@ -103,10 +103,10 @@ class FieldsPreparer(Preparer): if isinstance(data, dict): # Dictionary enough for us. - value = data.get(part) - ...
Fixed #<I>. Fixed all tests that got broken in last changeset.
py
diff --git a/app/readers/fasta.py b/app/readers/fasta.py index <HASH>..<HASH> 100644 --- a/app/readers/fasta.py +++ b/app/readers/fasta.py @@ -16,8 +16,7 @@ def get_protein_acc_iter(fastafn): def parse_protein_identifier(record): - ## FIXME now parsing uniprot only... - return record.id.split('|')[1] + re...
MSGF apparently outputs full fasta IDs, not only accession numbers
py
diff --git a/docs/conf.py b/docs/conf.py index <HASH>..<HASH> 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -120,7 +120,7 @@ html_theme = 'alabaster' # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a fi...
Remove static path from d ocs.
py
diff --git a/simuvex/plugins/solver.py b/simuvex/plugins/solver.py index <HASH>..<HASH> 100644 --- a/simuvex/plugins/solver.py +++ b/simuvex/plugins/solver.py @@ -266,7 +266,7 @@ class SimSolver(SimStatePlugin): raise SimValueError("concretized %d values (%d required) in exactly_n" % (len(r), n)) ...
Forgot to actually return the first element...
py
diff --git a/salt/modules/status.py b/salt/modules/status.py index <HASH>..<HASH> 100644 --- a/salt/modules/status.py +++ b/salt/modules/status.py @@ -11,7 +11,7 @@ import fnmatch # Import salt libs import salt.utils -from salt.utils.network import remote_port_tcp +from salt.utils.network import remote_port_tcp as ...
Fix failing tests for missing docstrings Also change an imported function to a private function so that it is not exposed in __salt__.
py
diff --git a/examples/circos/group_labels.py b/examples/circos/group_labels.py index <HASH>..<HASH> 100644 --- a/examples/circos/group_labels.py +++ b/examples/circos/group_labels.py @@ -13,7 +13,7 @@ c = CircosPlot( node_grouping="class", node_color="class", node_order="class", - node_labels=False, +...
Changed group_labels example to show both labels
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -57,7 +57,7 @@ CLASSIFIERS = [ ] -AUTHOR = 'google' +AUTHOR = 'Google' AUTHOR_EMAIL = 'google-pyfakefs@google.com' MAINTAINER = 'John McGehee' MAINTAINER_EMAIL = 'pyfakefs@johnnado.com' @@ -76,7 +76,9 @@ params = dict(...
Add inline long_description. PyPi can't handle Markdown.
py
diff --git a/stagpy/field.py b/stagpy/field.py index <HASH>..<HASH> 100644 --- a/stagpy/field.py +++ b/stagpy/field.py @@ -152,7 +152,8 @@ def plot_scalar(step, var, field=None, axis=None, set_cbar=True, **extra): fig = axis.get_figure() if step.sdat.par['magma_oceans_in']['magma_oceans_mode']: - ...
Split line to <I> chars
py
diff --git a/glances/plugins/glances_processlist.py b/glances/plugins/glances_processlist.py index <HASH>..<HASH> 100644 --- a/glances/plugins/glances_processlist.py +++ b/glances/plugins/glances_processlist.py @@ -295,15 +295,10 @@ class Plugin(GlancesPlugin): if cmdline == '': msg = ' {0...
Hide program path in short process view Fix bug introduced in commit e<I>cb5.
py
diff --git a/uflash.py b/uflash.py index <HASH>..<HASH> 100644 --- a/uflash.py +++ b/uflash.py @@ -27,7 +27,7 @@ will flash the unmodified MicroPython firmware onto the device. Use the -e flag to recover a Python script from a hex file. Use the -r flag to specify a custom version of the MicroPython runtime. -Docume...
Convert readthedocs link for their .org -> .io migration for hosted projects As per [their blog post of the <I>th April](<URL>) ‘Securing subdomains’: > Starting today, Read the Docs will start hosting projects from subdomains on the domain readthedocs.io, instead of on readthedocs.org. This change addresses some sec...
py
diff --git a/fontaine/charmaps/gwf_latin.py b/fontaine/charmaps/gwf_latin.py index <HASH>..<HASH> 100644 --- a/fontaine/charmaps/gwf_latin.py +++ b/fontaine/charmaps/gwf_latin.py @@ -23,7 +23,6 @@ class Charmap: glyphs += [0x20ac] # Euro glyphs += [0x0152] # OE glyphs += [0x0153] # oe - ...
Updating gwf_latin.py charmap to remove duplicate
py
diff --git a/renumber.py b/renumber.py index <HASH>..<HASH> 100755 --- a/renumber.py +++ b/renumber.py @@ -9,7 +9,7 @@ def sort_events(events): events.sort(key=lambda x: (x.date, x.number)) def renumber_events(events, start=1): - for num, event in enumerate(events): + for num, event in enumerate(events, s...
renumber: use the start parameter for what it's supposed to do
py
diff --git a/odl/solvers/functional/default_functionals.py b/odl/solvers/functional/default_functionals.py index <HASH>..<HASH> 100644 --- a/odl/solvers/functional/default_functionals.py +++ b/odl/solvers/functional/default_functionals.py @@ -1906,9 +1906,9 @@ class NuclearNorm(Functional): def __repr__(self): ...
MAINT: pep8 fixes to nuclear norm
py
diff --git a/drizzlepac/processInput.py b/drizzlepac/processInput.py index <HASH>..<HASH> 100644 --- a/drizzlepac/processInput.py +++ b/drizzlepac/processInput.py @@ -961,10 +961,10 @@ def buildEmptyDRZ(input, output): oname = 'final' output = fileutil.buildNewRootname(oname, extn='_drz.fits') ...
Fix empty drz naming problem (HSTSDP-<I>) (#<I>)
py
diff --git a/src/toil/provisioners/node.py b/src/toil/provisioners/node.py index <HASH>..<HASH> 100644 --- a/src/toil/provisioners/node.py +++ b/src/toil/provisioners/node.py @@ -130,7 +130,7 @@ class Node(object): if time.time() - startTime > self.maxWaitTime: raise RuntimeError("Docker d...
Fix docker daemon detection depending on terminal size
py
diff --git a/ella/core/feeds.py b/ella/core/feeds.py index <HASH>..<HASH> 100644 --- a/ella/core/feeds.py +++ b/ella/core/feeds.py @@ -54,7 +54,9 @@ class RSSTopCategoryListings(Feed): # Item metadata ########################################################################### def item_guid(self, item): -...
guid in feed is None when using redis-based listing handlers, provide at least something.
py
diff --git a/troposphere/apigateway.py b/troposphere/apigateway.py index <HASH>..<HASH> 100644 --- a/troposphere/apigateway.py +++ b/troposphere/apigateway.py @@ -95,12 +95,18 @@ class StageDescription(AWSProperty): props = { "CacheClusterEnabled": (bool, False), "CacheClusterSize": (basestring, ...
Update fields in apigateway StageDescription (Fixes #<I>)
py
diff --git a/OpenSesame/password.py b/OpenSesame/password.py index <HASH>..<HASH> 100644 --- a/OpenSesame/password.py +++ b/OpenSesame/password.py @@ -10,7 +10,7 @@ from OpenSesame.secureutils import lookup_path def create_passwords(): apg_bin = lookup_path('apg') - pipe = subprocess.Popen([apg_bin, "-t", "-...
space inbetween -N MS fails on <I>b subprocess
py
diff --git a/tests/commands/test_global.py b/tests/commands/test_global.py index <HASH>..<HASH> 100644 --- a/tests/commands/test_global.py +++ b/tests/commands/test_global.py @@ -103,8 +103,7 @@ class TestComposeCommand(unittest.TestCase): self.assertFalse(envelope.sign) self.assertIs(envelope.sign_ke...
tests/commands/globals: Simplify template_decode test
py
diff --git a/frojd_fabric/api.py b/frojd_fabric/api.py index <HASH>..<HASH> 100644 --- a/frojd_fabric/api.py +++ b/frojd_fabric/api.py @@ -45,6 +45,9 @@ def init_tasks(): if "cd" not in env: env.cd = cd + if "max_releases" not in env: + env.max_releases = 5 + run_hook("init_tasks") @@...
Changed folder format to milliseconds. Added max_releases default value
py
diff --git a/salt/modules/status.py b/salt/modules/status.py index <HASH>..<HASH> 100644 --- a/salt/modules/status.py +++ b/salt/modules/status.py @@ -155,7 +155,6 @@ def uptime(): else: raise CommandExecutionError('This platform is not supported') - utc_time = datetime.datetime.utcfromtimestamp(ti...
Lintfix: E<I> too many blank lines
py
diff --git a/skew/resources/aws/es.py b/skew/resources/aws/es.py index <HASH>..<HASH> 100644 --- a/skew/resources/aws/es.py +++ b/skew/resources/aws/es.py @@ -23,7 +23,8 @@ class ElasticsearchDomain(AWSResource): service = 'es' type = 'domain' enum_spec = ('list_domain_names', 'DomainNames[]....
Update tags_spec for ElasticsearchDomain (#<I>) We can now retrieve ElasticsearchDomain tag list.
py
diff --git a/coursera/cookies.py b/coursera/cookies.py index <HASH>..<HASH> 100644 --- a/coursera/cookies.py +++ b/coursera/cookies.py @@ -12,8 +12,7 @@ import requests from six.moves import StringIO from six.moves import http_cookiejar as cookielib from .define import AUTH_URL, CLASS_URL, AUTH_REDIRECT_URL, PATH_CO...
cookies: Add a second csrf cookie. Based on code provided by @fuz-woo. For some reason, it doesn't work for me when I use Python 2, but it does when I use Python 3 and needs further investigation, because this alienates a huge fraction of the users.
py
diff --git a/pymod2pkg/__init__.py b/pymod2pkg/__init__.py index <HASH>..<HASH> 100644 --- a/pymod2pkg/__init__.py +++ b/pymod2pkg/__init__.py @@ -124,6 +124,7 @@ RDO_PKG_MAP = [ SingleRule('xattr', 'pyxattr'), SingleRule('XStatic-term.js', 'python-XStatic-termjs'), SingleRule('horizon', 'openstack-dashb...
Add mappings for networking-vsphere Openstack mappings for the networking-vsphere project: <URL>
py
diff --git a/hiddenlayer/graph.py b/hiddenlayer/graph.py index <HASH>..<HASH> 100644 --- a/hiddenlayer/graph.py +++ b/hiddenlayer/graph.py @@ -84,6 +84,12 @@ class Node(): # Kernel kernel = self.params["kernel_shape"] title += "x".join(map(str, kernel)) + if "stride" in sel...
Add stride to conv and pooling layers
py
diff --git a/python/sparknlp/base.py b/python/sparknlp/base.py index <HASH>..<HASH> 100644 --- a/python/sparknlp/base.py +++ b/python/sparknlp/base.py @@ -5,6 +5,7 @@ from pyspark.ml.param.shared import Param, Params, TypeConverters from pyspark.ml.pipeline import Pipeline, PipelineModel, Estimator, Transformer from ...
Preferred import of Annotation at an upper level
py
diff --git a/src/kba/pipeline/test_dedup.py b/src/kba/pipeline/test_dedup.py index <HASH>..<HASH> 100644 --- a/src/kba/pipeline/test_dedup.py +++ b/src/kba/pipeline/test_dedup.py @@ -18,7 +18,7 @@ logger.addHandler(ch) from _test_data import get_test_chunk_path, get_test_chunk -def test_dedup_debugging_config(): +...
Fix test to use temporary directory All tests that need temporary storage should use this (or equivalent.) See: <URL>
py
diff --git a/sciluigi/audit.py b/sciluigi/audit.py index <HASH>..<HASH> 100644 --- a/sciluigi/audit.py +++ b/sciluigi/audit.py @@ -28,8 +28,8 @@ class AuditTrailHelpers(): if not os.path.exists(auditfile): with open(auditfile, 'w') as afile: afile.write('[%s]\n' % self.instance_na...
Bugfix: Indentation error: Only first audit log info was written
py
diff --git a/ait/core/seq.py b/ait/core/seq.py index <HASH>..<HASH> 100644 --- a/ait/core/seq.py +++ b/ait/core/seq.py @@ -54,7 +54,7 @@ class Seq (object): self.pathname = pathname self.cmddict = cmddict or cmd.getDefaultCmdDict() self.crc32 = None - self.seqid = int(id) + self.seqid ...
Issue #<I> - Make Seq sequence id optional on initialization Seq no longer tries to cast the sequence `id` argument on initialization so creating a new Seq without an id is valid. This is useful when creating a Seq from a binary encoded sequence file in which the sequence id is encoded. By default, it will parse this ...
py
diff --git a/qpformat/file_formats/series_hdf5_hyperspy.py b/qpformat/file_formats/series_hdf5_hyperspy.py index <HASH>..<HASH> 100644 --- a/qpformat/file_formats/series_hdf5_hyperspy.py +++ b/qpformat/file_formats/series_hdf5_hyperspy.py @@ -73,7 +73,7 @@ class SeriesHdf5HyperSpy(SeriesData): with h5py.File(n...
ref: h5py replace .value with [:]
py
diff --git a/goristock.py b/goristock.py index <HASH>..<HASH> 100644 --- a/goristock.py +++ b/goristock.py @@ -51,7 +51,15 @@ class goristock(object): while len(self.raw_data) < data_num: # start fetch data. self.csv_read = self.fetch_data(stock_no, datetime.today() - timedelta(days = 30 * star...
Fix fetch no data in the first day of month.
py
diff --git a/tests/test_component/test_amgr.py b/tests/test_component/test_amgr.py index <HASH>..<HASH> 100755 --- a/tests/test_component/test_amgr.py +++ b/tests/test_component/test_amgr.py @@ -369,13 +369,6 @@ def test_amgr_setup_mqs(): for q in qs: mq_channel.queue_delete(queue=q) - with open('.%s...
removed test for queue names, affected by cae<I>f<I>b<I>db<I>b<I>cc<I>bc4b<I>
py
diff --git a/pydem/dem_processing.py b/pydem/dem_processing.py index <HASH>..<HASH> 100644 --- a/pydem/dem_processing.py +++ b/pydem/dem_processing.py @@ -2018,7 +2018,8 @@ class DEMProcessor(object): Jdrain = Jdrain[b] # calculate real distances - dx = [dX[make_sl...
BUGFIX: I think I've actually figured out what this piece of code does, and I believe this is the proper fix.
py
diff --git a/trollimage/colormap.py b/trollimage/colormap.py index <HASH>..<HASH> 100644 --- a/trollimage/colormap.py +++ b/trollimage/colormap.py @@ -172,8 +172,7 @@ class Colormap(object): aren't provided. values: One dimensional array-like of control points where each corresponding...
Simplify description of monotonic values in colormap
py
diff --git a/salt/netapi/rest_cherrypy/app.py b/salt/netapi/rest_cherrypy/app.py index <HASH>..<HASH> 100644 --- a/salt/netapi/rest_cherrypy/app.py +++ b/salt/netapi/rest_cherrypy/app.py @@ -371,7 +371,7 @@ def salt_api_acl_tool(username, request): if cherrypy_conf: # ACL Config. acl ...
Fixing PEP-8/Lint.
py
diff --git a/ipyrad/assemble/cluster_within.py b/ipyrad/assemble/cluster_within.py index <HASH>..<HASH> 100644 --- a/ipyrad/assemble/cluster_within.py +++ b/ipyrad/assemble/cluster_within.py @@ -39,6 +39,8 @@ def sample_cleanup(data, sample): sample.files.clusters = os.path.join(data.dirs.clusts, ...
fixed a typo which allowed clustering to run during 'reference' step, which it doesn't need to.
py
diff --git a/src/openaccess_epub/commands/configure.py b/src/openaccess_epub/commands/configure.py index <HASH>..<HASH> 100644 --- a/src/openaccess_epub/commands/configure.py +++ b/src/openaccess_epub/commands/configure.py @@ -327,9 +327,9 @@ appropriate input-relative path.''') EpubCheck is a program written and ma...
Updating epubcheck url for users to get copies of releases
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -89,7 +89,7 @@ def runSetup(): license="Apache License v2.0", install_requires=[ 'bd2k-python-lib>=1.14a1.dev35', - 'dill==0.2.5', + 'dill==0.2.7.1', 'six>=1.10...
Update Dill==<I>.
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -21,7 +21,7 @@ setup( zip_safe=False, install_requires=[ 'Django>=1.2.3', - 'South==0.7.2' + 'South>=0.7.2' ], # test_suite = 'django_cron.tests', include_package_data=True,
Changing South requirement to be >=<I>
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -18,8 +18,12 @@ setup( package_data={"xopen": ["py.typed"]}, extras_require={ 'dev': ['pytest'], - # Install isa-l on 64 bit platforms. Wheels are provided. - ':"64" in platform.machine': ['isa...
More specific platforms to prevent installation errors.
py
diff --git a/runtests.py b/runtests.py index <HASH>..<HASH> 100755 --- a/runtests.py +++ b/runtests.py @@ -37,7 +37,7 @@ if not settings.configured: 'django.middleware.csrf.CsrfViewMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', ), - TEST_RUNNER = 'djang...
fx runtests for Django<<I>
py
diff --git a/testproject/settings.py b/testproject/settings.py index <HASH>..<HASH> 100644 --- a/testproject/settings.py +++ b/testproject/settings.py @@ -157,9 +157,7 @@ SOCIAL_AUTH_LOGIN_REDIRECT_URL = '/user/close_popup/' SESSION_SERIALIZER='django.contrib.sessions.serializers.PickleSerializer' -ALLOWED_HOSTS =...
delete autoskola from setting (testing app)
py
diff --git a/dddp/api.py b/dddp/api.py index <HASH>..<HASH> 100644 --- a/dddp/api.py +++ b/dddp/api.py @@ -298,7 +298,7 @@ class Collection(APIMixin): } # Django supports model._meta -> pylint: disable=W0212 meta = self.model._meta - connection = router.db_for_read(self.model.objects.n...
Bugfix /app.model/schema helper method to work with more model field types.
py
diff --git a/mongodb_migrations/cli.py b/mongodb_migrations/cli.py index <HASH>..<HASH> 100644 --- a/mongodb_migrations/cli.py +++ b/mongodb_migrations/cli.py @@ -105,7 +105,7 @@ class MigrationManager(object): 'created_at': datetime.now()}) def _remove_migration(self, ...
Fix downgrading method Mongo does not support remove() method Link: <URL>
py
diff --git a/flux_led/models_db.py b/flux_led/models_db.py index <HASH>..<HASH> 100755 --- a/flux_led/models_db.py +++ b/flux_led/models_db.py @@ -470,7 +470,7 @@ HARDWARE = [ MODELS = [ LEDENETModel( model_num=0x01, - models=[], + models=["HF-A11-ZJ002"], description="Legacy Contr...
Update model db (#<I>)
py
diff --git a/skyfield/__init__.py b/skyfield/__init__.py index <HASH>..<HASH> 100644 --- a/skyfield/__init__.py +++ b/skyfield/__init__.py @@ -5,6 +5,6 @@ functions and classes there. See the ``documentation`` directory inside the source code, as well as the http://rhodesmill.org/skyfield/ site! """ -VERSION = (1,...
Update version number to <I>
py
diff --git a/cpuinfo/cpuinfo.py b/cpuinfo/cpuinfo.py index <HASH>..<HASH> 100644 --- a/cpuinfo/cpuinfo.py +++ b/cpuinfo/cpuinfo.py @@ -87,16 +87,21 @@ class Trace(object): def fail(self, msg): if not self._is_active: return + from inspect import stack + frame = stack()[1] + file = frame[1] + line = frame[2] ...
Added trace line numbers on failure.
py
diff --git a/gpsdaemon/daemon.py b/gpsdaemon/daemon.py index <HASH>..<HASH> 100644 --- a/gpsdaemon/daemon.py +++ b/gpsdaemon/daemon.py @@ -97,7 +97,7 @@ class GpsDaemon(Daemon): def _send_dict(self, bus: BusWriter, d: dict): for key, value in d.items(): - bus.publish(key, value) + ...
Fixed a problem that caused exceptions to be raised then publishing non-string values
py
diff --git a/faker/providers/lt_LT/person.py b/faker/providers/lt_LT/person.py index <HASH>..<HASH> 100644 --- a/faker/providers/lt_LT/person.py +++ b/faker/providers/lt_LT/person.py @@ -1,4 +1,3 @@ -#!/usr/bin/env python # -*- coding: utf-8 -*- from __future__ import unicode_literals
lt_LT removed shebang
py
diff --git a/pytest_asyncio/plugin.py b/pytest_asyncio/plugin.py index <HASH>..<HASH> 100644 --- a/pytest_asyncio/plugin.py +++ b/pytest_asyncio/plugin.py @@ -69,10 +69,7 @@ def event_loop(request): event_loop = policy.new_event_loop() policy.set_event_loop(event_loop) - def _close(): - event_loop...
Various simplifications Removed unneeded local finalizer in event_loop Simplified code in unused_tcp_port
py
diff --git a/client/g2p.py b/client/g2p.py index <HASH>..<HASH> 100644 --- a/client/g2p.py +++ b/client/g2p.py @@ -1,9 +1,9 @@ # -*- coding: utf-8-*- import os +import tempfile import subprocess import re -TEMP_FILENAME = "g2ptemp" PHONE_MATCH = re.compile(r'<s> (.*) </s>') PHONETISAURUS_PATH = os.environ['JASP...
Use tempfile in client.g2p
py
diff --git a/src/salicml/metrics/finance/proponent_projects.py b/src/salicml/metrics/finance/proponent_projects.py index <HASH>..<HASH> 100644 --- a/src/salicml/metrics/finance/proponent_projects.py +++ b/src/salicml/metrics/finance/proponent_projects.py @@ -19,7 +19,7 @@ def proponent_projects(pronac, data): prop...
Remove project pronac from proponent_projects list
py
diff --git a/selene/elements.py b/selene/elements.py index <HASH>..<HASH> 100644 --- a/selene/elements.py +++ b/selene/elements.py @@ -362,9 +362,15 @@ class SeleneElement(with_metaclass(DelegatingMeta, IWebElement)): set_value = set def scroll_to(self): - location = self.get_actual_webelement().loca...
#<I>: added waiting for visibility intro scroll_to
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100755 --- a/setup.py +++ b/setup.py @@ -41,5 +41,5 @@ setup( "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", ], package_data = {'flat':['templates/*.html','style/*'], 'flat.modes.structureeditor':['templates/*.html'], 'flat.m...
dependency version update (flat version not bumped yet)
py
diff --git a/HARK/core.py b/HARK/core.py index <HASH>..<HASH> 100644 --- a/HARK/core.py +++ b/HARK/core.py @@ -52,6 +52,10 @@ def distanceMetric(thing_A, thing_B): distance = max(distance_temp) else: distance = float(abs(lenA - lenB)) + # If both inputs are dictionaries, call dista...
Add support for dict's in distanceMetric
py
diff --git a/runtests.py b/runtests.py index <HASH>..<HASH> 100755 --- a/runtests.py +++ b/runtests.py @@ -35,7 +35,7 @@ if not settings.configured: #'fluent_contents.plugins.oembeditem', #'fluent_contents.plugins.picture', 'fluent_contents.plugins.rawhtml', - 'fluent_c...
runtests: disable sharedcontent, migrations fail with tests due to missing Site
py
diff --git a/tests/unit/modules/test_state.py b/tests/unit/modules/test_state.py index <HASH>..<HASH> 100644 --- a/tests/unit/modules/test_state.py +++ b/tests/unit/modules/test_state.py @@ -991,3 +991,17 @@ class StateTestCase(TestCase, LoaderModuleMockMixin): ({}, None)]: ...
Add unit test for _get_pillar_errors when external pillar has errors and internal is clean
py
diff --git a/unicode_string_literal.py b/unicode_string_literal.py index <HASH>..<HASH> 100644 --- a/unicode_string_literal.py +++ b/unicode_string_literal.py @@ -21,8 +21,8 @@ class UnicodeStringLiteral(object): def add_options(cls, parser): parser.add_option('--utter-unicode-string-literals', ...
Migrate to flake8 3.x Since flake8 <I>, registering options is handled differently. See <URL>
py
diff --git a/checksumdir/__init__.py b/checksumdir/__init__.py index <HASH>..<HASH> 100644 --- a/checksumdir/__init__.py +++ b/checksumdir/__init__.py @@ -46,8 +46,8 @@ def dirhash(dirname, hashfunc='md5', excluded_files=None, ignore_hidden=False, if ignore_hidden and re.search(r'/\.', root): cont...
Learning working with github and it's push system...
py
diff --git a/python/ray/tune/result.py b/python/ray/tune/result.py index <HASH>..<HASH> 100644 --- a/python/ray/tune/result.py +++ b/python/ray/tune/result.py @@ -16,10 +16,10 @@ NODE_IP = "node_ip" # (Auto-filled) The pid of the training process. PID = "pid" -# Number of timesteps in this iteration. +# Number of e...
[tune] Fix (some more) misleading comments in tune/results.py (#<I>) ## What do these changes do? Fix the misleading comments in code for: - `EPISODES_THIS_ITER` - `EPISODES_TOTAL` Had noted it before and planned to fix it along with some other changes but seemed very relevant to stay next to #<I> so sending...
py
diff --git a/cobra/oven/aliebrahim/fluxAnalysis.py b/cobra/oven/aliebrahim/fluxAnalysis.py index <HASH>..<HASH> 100644 --- a/cobra/oven/aliebrahim/fluxAnalysis.py +++ b/cobra/oven/aliebrahim/fluxAnalysis.py @@ -1,6 +1,4 @@ import cobra -from IPython import embed - def optimize_minimal_flux(model, already_irreve...
fix bug in pFBA from oven
py
diff --git a/unittests/from_future_import_tester.py b/unittests/from_future_import_tester.py index <HASH>..<HASH> 100644 --- a/unittests/from_future_import_tester.py +++ b/unittests/from_future_import_tester.py @@ -30,12 +30,7 @@ class tester_t(parser_test_case.parser_test_case_t): def test_namespace_argument_in...
Use an assertRaises in test, remove exception with pass
py
diff --git a/s3direct/views.py b/s3direct/views.py index <HASH>..<HASH> 100644 --- a/s3direct/views.py +++ b/s3direct/views.py @@ -5,11 +5,13 @@ from urllib.parse import unquote from django.conf import settings from django.http import HttpResponse, HttpResponseBadRequest, HttpResponseForbidden, HttpResponseNotFound, ...
CSRF-protect views in case the user hasn't enabled CSRF middleware.
py
diff --git a/openquake/calculators/tests/event_based_risk_test.py b/openquake/calculators/tests/event_based_risk_test.py index <HASH>..<HASH> 100644 --- a/openquake/calculators/tests/event_based_risk_test.py +++ b/openquake/calculators/tests/event_based_risk_test.py @@ -354,12 +354,12 @@ agg_id # check aggcurv...
Raised tolerance in EventBasedRiskTestCase::test_case_master
py
diff --git a/raven/conf/__init__.py b/raven/conf/__init__.py index <HASH>..<HASH> 100644 --- a/raven/conf/__init__.py +++ b/raven/conf/__init__.py @@ -19,7 +19,7 @@ def load(dsn, scope): >>> raven.load(dsn, locals()) """ url = urlparse.urlparse(dsn) - if url.scheme not in ('http', 'https'): + if ur...
Support udp scheme in raven.load
py
diff --git a/treeherder/perf/management/commands/import_perf_data.py b/treeherder/perf/management/commands/import_perf_data.py index <HASH>..<HASH> 100644 --- a/treeherder/perf/management/commands/import_perf_data.py +++ b/treeherder/perf/management/commands/import_perf_data.py @@ -36,7 +36,7 @@ def _add_series(pc, pro...
Bug <I> - Fix import_perf_data exception string formatting (#<I>) Since `.format()` doesn't support `%s`. Found by the eslint `too-many-format-args` rule.
py
diff --git a/salt/renderers/gpg.py b/salt/renderers/gpg.py index <HASH>..<HASH> 100644 --- a/salt/renderers/gpg.py +++ b/salt/renderers/gpg.py @@ -95,6 +95,7 @@ from salt.exceptions import SaltRenderError # Import 3rd-party libs import salt.ext.six as six + # pylint: disable=import-error try: import gnupg @@...
Move from basestring to six.string_types which is compatible with python 2 and 3
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -4,7 +4,7 @@ required_packages = ["graphql-core>=2.1", "promise"] setup( name="graphql-server-core", - version="1.1rc0", + version="1.1", description="GraphQL Server tools for powering your server", lon...
Updated version to <I>
py
diff --git a/django_q/cluster.py b/django_q/cluster.py index <HASH>..<HASH> 100644 --- a/django_q/cluster.py +++ b/django_q/cluster.py @@ -426,7 +426,6 @@ def save_cached(task, broker): iter_count = task.get('iter_count', 0) # if it's a group append to the group list if group: - ta...
Fixes bug where task with a group only has a group result.
py
diff --git a/Imports/fits_image.py b/Imports/fits_image.py index <HASH>..<HASH> 100644 --- a/Imports/fits_image.py +++ b/Imports/fits_image.py @@ -77,11 +77,15 @@ class FitsImage(): # dimensions of length 1 if self._pixels is None: if len(self.hdu.data.shape) == 2: - self._...
in response to #<I>, fits_image now exclusively uses NaN for blanked pixels, reguardless of which version of pyfits is used
py
diff --git a/fudge/__init__.py b/fudge/__init__.py index <HASH>..<HASH> 100644 --- a/fudge/__init__.py +++ b/fudge/__init__.py @@ -267,6 +267,13 @@ class Call(object): return return_value def _args_are_equal(self, actual_args, expected_args): + if (len(actual_args)<=1 and len(expected_arg...
better detection of simple kwargs
py
diff --git a/hearthstone/utils.py b/hearthstone/utils.py index <HASH>..<HASH> 100644 --- a/hearthstone/utils.py +++ b/hearthstone/utils.py @@ -189,6 +189,17 @@ UPGRADABLE_CARDS_MAP = { "DAL_366t2": "DAL_366", "DAL_366t3": "DAL_366", "DAL_366t4": "DAL_366", + # Galakrond + "DRG_600t2": "DRG_600", + "DRG_600t3": "D...
Add Galakrond to list of upgraded cards
py
diff --git a/pygccxml/parser/scanner.py b/pygccxml/parser/scanner.py index <HASH>..<HASH> 100644 --- a/pygccxml/parser/scanner.py +++ b/pygccxml/parser/scanner.py @@ -261,9 +261,19 @@ class scanner_t(xml.sax.handler.ContentHandler): if "CastXML" in utils.xml_generator: # These fields are generated...
Add support for clang <I> (trunk) (see bug #<I>) The fields without file defintion have been added to the list of tags which need to be skipped. Chery-picked from develop branch
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -33,7 +33,7 @@ packages = setuptools.find_packages() setuptools.setup( name="dialogflow", - version="0.7.0", + version=version, author="Google LLC", author_email="googleapis-packages@google.com", l...
fix: define version once in setup.py (#<I>)
py
diff --git a/molo/profiles/tests/test_views.py b/molo/profiles/tests/test_views.py index <HASH>..<HASH> 100644 --- a/molo/profiles/tests/test_views.py +++ b/molo/profiles/tests/test_views.py @@ -574,4 +574,16 @@ class ForgotPasswordViewTest(TestCase): response = self.client.get( reverse("molo.prof...
layed out tests for ForgotPassword
py
diff --git a/backtrader/order.py b/backtrader/order.py index <HASH>..<HASH> 100644 --- a/backtrader/order.py +++ b/backtrader/order.py @@ -150,6 +150,8 @@ class OrderData(object): # price must always be set if pricelimit is set ... self.price = pricelimit + self.plimit = pricelimit + ...
Add plimit alias to order and orderdata
py
diff --git a/src/micropython.py b/src/micropython.py index <HASH>..<HASH> 100755 --- a/src/micropython.py +++ b/src/micropython.py @@ -1,2 +1,14 @@ def const(x): return x + + +def native(f): + return f + + +def viper(f): + raise SyntaxError("invalid micropython decorator") + + +def asm_thumb(f): + raise ...
Add stubs for micropython.natve, viper, and asm_thumb
py
diff --git a/papermill/preprocess.py b/papermill/preprocess.py index <HASH>..<HASH> 100644 --- a/papermill/preprocess.py +++ b/papermill/preprocess.py @@ -7,6 +7,7 @@ from concurrent import futures from nbconvert.preprocessors import ExecutePreprocessor from nbconvert.preprocessors.execute import CellExecutionError ...
add new iopub_timeout default value to account for change in exec order
py
diff --git a/voluptuous.py b/voluptuous.py index <HASH>..<HASH> 100644 --- a/voluptuous.py +++ b/voluptuous.py @@ -776,6 +776,9 @@ def _compile_itemsort(): def is_extra(key_): return key_ is Extra + def is_remove(key_): + return isinstance(key_, Remove) + def is_marker(key_): ret...
set Remove as hightest priority Marker to avoid conflicts
py
diff --git a/twilio/http/http_client.py b/twilio/http/http_client.py index <HASH>..<HASH> 100644 --- a/twilio/http/http_client.py +++ b/twilio/http/http_client.py @@ -5,7 +5,9 @@ from twilio.http.response import Response class TwilioHttpClient(HttpClient): - """General purpose HTTP Client for interacting with t...
Document `http/http_client.py`
py
diff --git a/hepdata_converter/testsuite/test_rootwriter.py b/hepdata_converter/testsuite/test_rootwriter.py index <HASH>..<HASH> 100644 --- a/hepdata_converter/testsuite/test_rootwriter.py +++ b/hepdata_converter/testsuite/test_rootwriter.py @@ -55,7 +55,7 @@ class ROOTWriterTestSuite(WriterTestSuite): f.Clos...
Ensure we use a binary output file for root
py
diff --git a/opan/hess.py b/opan/hess.py index <HASH>..<HASH> 100644 --- a/opan/hess.py +++ b/opan/hess.py @@ -410,12 +410,26 @@ class OrcaHess(SuperOpanHess): Retrieves individual lines of the frequencies block. - p_jobs_block: Entire job list block - p_jobs_line: Individual lines of the...
DOC: Bit of progress on OrcaHess
py
diff --git a/synapse/lib/ingest.py b/synapse/lib/ingest.py index <HASH>..<HASH> 100644 --- a/synapse/lib/ingest.py +++ b/synapse/lib/ingest.py @@ -221,6 +221,7 @@ class Ingest(EventBus): raise Exception('Ingest Info Not Found: %s' % (path,)) for data in self._openDataSorc(path,info): + ...
initial mm prep code for inet ingest
py
diff --git a/autoapi/extension.py b/autoapi/extension.py index <HASH>..<HASH> 100644 --- a/autoapi/extension.py +++ b/autoapi/extension.py @@ -161,7 +161,21 @@ def _traverse_parent(node, objtypes): def doctree_resolved(app, doctree, docname): - "Add domain objects to the toctree" + """ + Add domain object...
Write up a more descriptive docstring
py
diff --git a/skflow/models.py b/skflow/models.py index <HASH>..<HASH> 100644 --- a/skflow/models.py +++ b/skflow/models.py @@ -29,7 +29,11 @@ def linear_regression(X, y): Predictions and loss tensors. """ with tf.variable_scope('linear_regression'): - output_shape = y.get_shape()[1] + y...
Fix for shape inference when y is rank == 1
py
diff --git a/spyder/utils/encoding.py b/spyder/utils/encoding.py index <HASH>..<HASH> 100644 --- a/spyder/utils/encoding.py +++ b/spyder/utils/encoding.py @@ -249,4 +249,7 @@ def is_text_file(filename): """ Test if the given path is a text-like file. """ - return not is_binary(filename) + try: ...
Catch error raised in isbinaryornot when trying to open a directory
py
diff --git a/salt/grains/napalm.py b/salt/grains/napalm.py index <HASH>..<HASH> 100644 --- a/salt/grains/napalm.py +++ b/salt/grains/napalm.py @@ -222,7 +222,7 @@ def uptime(proxy=None): CLI Example - select all devices started/restarted within the last hour: - .. code-block: bash + .. code-block:: bash ...
Fix docstring for uptime grain
py
diff --git a/tensor2tensor/mesh_tensorflow/research/moe.py b/tensor2tensor/mesh_tensorflow/research/moe.py index <HASH>..<HASH> 100644 --- a/tensor2tensor/mesh_tensorflow/research/moe.py +++ b/tensor2tensor/mesh_tensorflow/research/moe.py @@ -475,6 +475,10 @@ def _top_2_gating( inputs, experts_dim, use_bias=Fals...
Get bf<I> activations working with mixture-of-experts. PiperOrigin-RevId: <I>
py
diff --git a/vcr/serializers/compat.py b/vcr/serializers/compat.py index <HASH>..<HASH> 100644 --- a/vcr/serializers/compat.py +++ b/vcr/serializers/compat.py @@ -24,7 +24,7 @@ def convert_body_to_bytes(resp): http://pyyaml.org/wiki/PyYAMLDocumentation#Python3support """ try: - if not isinstance(r...
VCR AttributeError: 'NoneType' object has no attribute 'encode' Hi, Using an old fork but may be usefull. I think checking the string is required like on line <I>. Best regards
py
diff --git a/zake/fake_client.py b/zake/fake_client.py index <HASH>..<HASH> 100644 --- a/zake/fake_client.py +++ b/zake/fake_client.py @@ -195,10 +195,10 @@ class FakeClient(object): return path def create_async(self, path, value=b"", acl=None, - ephemeral=False, sequence=False): + ...
Include makepath on the create_async method
py