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diff --git a/src/sos/utils.py b/src/sos/utils.py index <HASH>..<HASH> 100644 --- a/src/sos/utils.py +++ b/src/sos/utils.py @@ -895,10 +895,6 @@ def sos_handle_parameter_(key, defvalue): NOTE: parmeters will not be handled if it is already defined in the environment. This makes the parameters variable. ''...
Reduce the occurance of warning message #<I>
py
diff --git a/fault/verilator_target.py b/fault/verilator_target.py index <HASH>..<HASH> 100644 --- a/fault/verilator_target.py +++ b/fault/verilator_target.py @@ -50,6 +50,9 @@ void my_assert( std::cerr << \"i : \" << std::dec << i << std::endl; std::cerr << \"Port : \" << port << std::endl; #if V...
Dump extra timestep on expect fail so we can see the final state
py
diff --git a/pants-plugins/tests/python/internal_backend_test/sitegen/test_sitegen.py b/pants-plugins/tests/python/internal_backend_test/sitegen/test_sitegen.py index <HASH>..<HASH> 100644 --- a/pants-plugins/tests/python/internal_backend_test/sitegen/test_sitegen.py +++ b/pants-plugins/tests/python/internal_backend_te...
Remove a failing test for deleted functionality. We no longer show breadcrumbs on the docsite. Testing Done: Verified that test suite passes without this test. Reviewed at <URL>
py
diff --git a/telethon/tl/custom/conversation.py b/telethon/tl/custom/conversation.py index <HASH>..<HASH> 100644 --- a/telethon/tl/custom/conversation.py +++ b/telethon/tl/custom/conversation.py @@ -333,6 +333,12 @@ class Conversation(ChatGetter): if message.chat_id != self.chat_id or message.out: ...
Fix handling of early edits in Conversation The incoming messages were never updated, so of course their edit_date wasn't either. This would cause the library to be stuck until it timed out, because the event had already arrived before we waited for it. As an example: await conv.send_message('foo') await slee...
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -11,14 +11,14 @@ import sys sys.path.insert(0, './searx') from version import VERSION_STRING +with open('README.rst') as f: + long_description = f.read() -def read(*rnames): - return open(os.path.join(os.path.dirna...
seatup.py: fix [dev_]requirements and open file with context setup(..) named arguments 'install_requires' and 'extras_require' need lists arguments, the <map object> is ignored when installing extra environment 'test':: pip install -e .\[test\]
py
diff --git a/umi_tools/extract.py b/umi_tools/extract.py index <HASH>..<HASH> 100644 --- a/umi_tools/extract.py +++ b/umi_tools/extract.py @@ -246,9 +246,10 @@ class Extractor: read1_format = read1.guessFormat() assert self.encoding in read1_format, ( "specified quality encodi...
corrects quality checking so only UMI bases in bc-pattern are checked
py
diff --git a/spyderlib/widgets/externalshell/pythonshell.py b/spyderlib/widgets/externalshell/pythonshell.py index <HASH>..<HASH> 100644 --- a/spyderlib/widgets/externalshell/pythonshell.py +++ b/spyderlib/widgets/externalshell/pythonshell.py @@ -272,10 +272,11 @@ class ExternalPythonShell(ExternalShellBase): ...
External Console: Use the new stop icon instead of the terminate one
py
diff --git a/txnintegration/integer_key_client.py b/txnintegration/integer_key_client.py index <HASH>..<HASH> 100644 --- a/txnintegration/integer_key_client.py +++ b/txnintegration/integer_key_client.py @@ -47,7 +47,7 @@ class IntegerKeyClient(IntegerKeyCommunication): elif keyfile: logger.debug("...
Strip newline from keyfile in integer_key_client
py
diff --git a/angr/state_plugins/view.py b/angr/state_plugins/view.py index <HASH>..<HASH> 100644 --- a/angr/state_plugins/view.py +++ b/angr/state_plugins/view.py @@ -54,10 +54,11 @@ class SimRegNameView(SimStatePlugin): inspect = True disable_actions = False - # When simulating a Jav...
Handle states with an unset project property
py
diff --git a/envy/__init__.py b/envy/__init__.py index <HASH>..<HASH> 100644 --- a/envy/__init__.py +++ b/envy/__init__.py @@ -1,3 +1,3 @@ -VERSION = '0.0.12' +VERSION = '0.0.13' from .application import get_active_venv, get_package_name, get_envy_path, original_backed_up, get_venv_full_package_path, get_file_path, s...
bump to <I> :balloon:
py
diff --git a/python/orca/src/setup.py b/python/orca/src/setup.py index <HASH>..<HASH> 100644 --- a/python/orca/src/setup.py +++ b/python/orca/src/setup.py @@ -92,7 +92,7 @@ def setup_package(): packages=get_bigdl_packages(), install_requires=['conda-pack==0.3.1', 'packaging', 'filelock', ...
Adding pyzmq dependency for orca (#<I>)
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100755 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ LibraryDirs = None # Add more platforms here when needed if os.name == 'nt' or sys.platform == 'win32': - Libraries = ['libeay32', 'ssleay32', 'Ws2_32'] + Libraries = ['eay32', 'ssleay32', 'Ws2_32'] ...
maybe eay<I> is nicer
py
diff --git a/docs/conf.py b/docs/conf.py index <HASH>..<HASH> 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -29,7 +29,7 @@ from version import __version__ # Add any Sphinx extension module names here, as strings. They can be extensions # coming with Sphinx (named 'sphinx.ext.*') or your custom ones. -extensions =...
removing releases till I can fix isssue with it.
py
diff --git a/vivarium/framework/time.py b/vivarium/framework/time.py index <HASH>..<HASH> 100644 --- a/vivarium/framework/time.py +++ b/vivarium/framework/time.py @@ -62,7 +62,7 @@ class SimpleClock(SimulationClock): self._step_size = builder.configuration.time.step_size -def _get_time_stamp(time): +def ge...
Move a private function to be public because we need it outside
py
diff --git a/km3pipe/pumps/aanet.py b/km3pipe/pumps/aanet.py index <HASH>..<HASH> 100644 --- a/km3pipe/pumps/aanet.py +++ b/km3pipe/pumps/aanet.py @@ -80,7 +80,7 @@ class AanetPump(Pump): pass for event in event_file: - if event.mc_id > 0 and event.mc_t > 0: # apply ZED c...
Use det_id to determine if the file is MC
py
diff --git a/spyder_kernels/customize/spyderpdb.py b/spyder_kernels/customize/spyderpdb.py index <HASH>..<HASH> 100755 --- a/spyder_kernels/customize/spyderpdb.py +++ b/spyder_kernels/customize/spyderpdb.py @@ -74,8 +74,17 @@ class SpyderPdb(ipyPdb, object): # Inherits `object` to call super() in PY2 ...
Update spyder_kernels/customize/spyderpdb.py
py
diff --git a/deploy_stack.py b/deploy_stack.py index <HASH>..<HASH> 100755 --- a/deploy_stack.py +++ b/deploy_stack.py @@ -568,6 +568,9 @@ def _deploy_job(job_name, base_env, upgrade, charm_prefix, bootstrap_host, if upgrade: client.juju('status', ()) assess_upgrade(client, juju_path)...
Add exercising of hooks to assessment of upgrade success
py
diff --git a/pyisbn/__init__.py b/pyisbn/__init__.py index <HASH>..<HASH> 100644 --- a/pyisbn/__init__.py +++ b/pyisbn/__init__.py @@ -72,6 +72,7 @@ else: DASHES = [unicodedata.lookup(s) for s in ('HYPHEN-MINUS', 'EN DASH', 'EM DASH', 'HORIZONTAL BAR')] +#: Site to URL mapp...
[Tr] Add doc for URL_MAP
py
diff --git a/iapws/_iapws.py b/iapws/_iapws.py index <HASH>..<HASH> 100644 --- a/iapws/_iapws.py +++ b/iapws/_iapws.py @@ -793,6 +793,9 @@ def getphase(Tc, Pc, T, P, x, region): phase : string Phase name """ + # Avoid round problem + P = round(P, 8) + T = round(T, 8) if P > Pc and T > T...
Fix getphase T and P round problem
py
diff --git a/f90nml.py b/f90nml.py index <HASH>..<HASH> 100644 --- a/f90nml.py +++ b/f90nml.py @@ -13,7 +13,7 @@ import os import shlex import textwrap -__version__ = '0.6.1' +__version__ = '0.6.2' #--- @@ -155,7 +155,9 @@ def write_nmlgrp(grp_name, grp_vars, nml_file): name_pad = ' ' * len(v_name + '...
Improved support for very long string inputs (though still buggy)
py
diff --git a/tests/__init__.py b/tests/__init__.py index <HASH>..<HASH> 100644 --- a/tests/__init__.py +++ b/tests/__init__.py @@ -179,7 +179,8 @@ def run_using_pytest(caller_globals): def wsdl(schema_content, input=None, output=None, operation_name="f", wsdl_target_namespace="my-wsdl-namespace", - x...
parametrize test WSDL construction with web service URL Does not affect existing uses but allows more customized usage in the future.
py
diff --git a/metaknowledge/bin/metaknowledgeDocsGen.py b/metaknowledge/bin/metaknowledgeDocsGen.py index <HASH>..<HASH> 100644 --- a/metaknowledge/bin/metaknowledgeDocsGen.py +++ b/metaknowledge/bin/metaknowledgeDocsGen.py @@ -90,7 +90,7 @@ def cleanargs(obj, basic = False): return '()' def makeUrls(s): - ...
Made links in the docsgen work better
py
diff --git a/etk/run_core_kafka.py b/etk/run_core_kafka.py index <HASH>..<HASH> 100644 --- a/etk/run_core_kafka.py +++ b/etk/run_core_kafka.py @@ -53,6 +53,7 @@ def run_serial_cdrs(core, consumer, producer, producer_topic, indexing=False): # continue if 'doc_id' not in cdr: cdr['doc_i...
remove _id from cdr object
py
diff --git a/vyked/registry.py b/vyked/registry.py index <HASH>..<HASH> 100644 --- a/vyked/registry.py +++ b/vyked/registry.py @@ -171,7 +171,7 @@ class Registry: def register_service(self, packet: dict, registry_protocol, host, port): params = packet['params'] - service = Service(params['service...
Using host from supplied params
py
diff --git a/tests/integration/modules/pillar.py b/tests/integration/modules/pillar.py index <HASH>..<HASH> 100644 --- a/tests/integration/modules/pillar.py +++ b/tests/integration/modules/pillar.py @@ -51,7 +51,7 @@ class PillarModuleTest(integration.ModuleCase): self.run_function('pillar.data')['test_ext...
tmp stub out test until we can find a better home for it
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -62,6 +62,8 @@ setup(name='PyVISA-py', 'Programming Language :: Python :: 3.2', 'Programming Language :: Python :: 3.3', 'Programming Language :: Python :: 3.4', + 'Programming Language :: Pyt...
increased langiage support in setup.py
py
diff --git a/hypermap/aggregator/models.py b/hypermap/aggregator/models.py index <HASH>..<HASH> 100644 --- a/hypermap/aggregator/models.py +++ b/hypermap/aggregator/models.py @@ -1222,7 +1222,7 @@ def update_layers_wm(service, num_layers=None): LOGGER.debug('Updating layer %s' % name) ...
We need to use llbox from WM api in place of bbox
py
diff --git a/glad/generator/c.py b/glad/generator/c.py index <HASH>..<HASH> 100644 --- a/glad/generator/c.py +++ b/glad/generator/c.py @@ -145,6 +145,7 @@ int gladInit(void); void* gladGetProcAddress(const char *namez); GLVersion gladLoadGL(void); GLVersion gladLoadGLLoader(LOADER); +void gladTerminate(void); #if...
generator: added gladTerminate to C header
py
diff --git a/play.py b/play.py index <HASH>..<HASH> 100755 --- a/play.py +++ b/play.py @@ -5,13 +5,27 @@ import pyshell + # The subshell classes must be defined before being referenced. class KarShell(pyshell.Shell): """The KarShell. This message shows up when you type 'help' """ - pass + + ...
Add examples of overloading lexer
py
diff --git a/pdfconduit/utils/info.py b/pdfconduit/utils/info.py index <HASH>..<HASH> 100644 --- a/pdfconduit/utils/info.py +++ b/pdfconduit/utils/info.py @@ -9,7 +9,7 @@ class Info: @staticmethod def _reader(path, password, prompt): """Read PDF and decrypt if encrypted.""" - pdf = PdfFileRead...
Added check to _reader method to determine if path param is already a PdfFileReader instance
py
diff --git a/django_cas_ng/views.py b/django_cas_ng/views.py index <HASH>..<HASH> 100644 --- a/django_cas_ng/views.py +++ b/django_cas_ng/views.py @@ -93,7 +93,7 @@ def login(request, next_page=None, required=False): if not next_page: next_page = _redirect_url(request) if request.user.is_authenticate...
Update views.py Use USERNAME_FIELD instead of first_name or username for custom user model, otherwise it will cause problems for custom model without these fields.
py
diff --git a/ndb/model_test.py b/ndb/model_test.py index <HASH>..<HASH> 100644 --- a/ndb/model_test.py +++ b/ndb/model_test.py @@ -2247,7 +2247,7 @@ class ModelTests(test_utils.NDBTest): # Now read this back using a GenericProperty. class Outer(model.Model): - inner = model.GenericProperty() + inn...
Fix testLocalStructuredPropertyWithKey, anticipating stricter stubs.
py
diff --git a/indra/sources/bbn/processor.py b/indra/sources/bbn/processor.py index <HASH>..<HASH> 100644 --- a/indra/sources/bbn/processor.py +++ b/indra/sources/bbn/processor.py @@ -81,7 +81,10 @@ class BBNJsonLdProcessor(object): def _get_bbn_grounding(entity): """Return BBN grounding.""" - ...
Strip off leading slash in groundings
py
diff --git a/pyqode/core/modes/filewatcher.py b/pyqode/core/modes/filewatcher.py index <HASH>..<HASH> 100644 --- a/pyqode/core/modes/filewatcher.py +++ b/pyqode/core/modes/filewatcher.py @@ -154,12 +154,15 @@ class FileWatcherMode(Mode, QtCore.QObject): "The file <i>%s</i> has changed externally.\nDo y...
Fix runtime error on deleted cpp obj (this can happens because the timer call us back just after the widget has been deleted, while other modes are being uninstalled)
py
diff --git a/pycbc/tmpltbank/lattice_utils.py b/pycbc/tmpltbank/lattice_utils.py index <HASH>..<HASH> 100644 --- a/pycbc/tmpltbank/lattice_utils.py +++ b/pycbc/tmpltbank/lattice_utils.py @@ -123,10 +123,7 @@ def generate_anstar_3d_lattice(maxv1, minv1, maxv2, minv2, maxv3, minv3, \ try: import lalpulsar ...
Fix the error raised if lalpulsar is not found.
py
diff --git a/pyaavso/formats/visual.py b/pyaavso/formats/visual.py index <HASH>..<HASH> 100644 --- a/pyaavso/formats/visual.py +++ b/pyaavso/formats/visual.py @@ -15,7 +15,7 @@ class VisualFormatWriter(object): .. _`Visual File Format`: http://www.aavso.org/aavso-visual-file-format """ - def __init__(sel...
Silly hack for delimiter always being string.
py
diff --git a/custodian/vasp/handlers.py b/custodian/vasp/handlers.py index <HASH>..<HASH> 100644 --- a/custodian/vasp/handlers.py +++ b/custodian/vasp/handlers.py @@ -96,17 +96,17 @@ class VaspErrorHandler(ErrorHandler, MSONable): if "NBANDS" in vi["INCAR"]: nbands = int(vi["INCAR"]["NBAND...
Decrease NBANDS increment to <I>%.
py
diff --git a/src/transformers/modeling_flax_pytorch_utils.py b/src/transformers/modeling_flax_pytorch_utils.py index <HASH>..<HASH> 100644 --- a/src/transformers/modeling_flax_pytorch_utils.py +++ b/src/transformers/modeling_flax_pytorch_utils.py @@ -86,7 +86,7 @@ def convert_pytorch_state_dict_to_flax(pt_state_dict, f...
correct conversion (#<I>)
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100755 --- a/setup.py +++ b/setup.py @@ -37,7 +37,7 @@ except pkg_resources.DistributionNotFound: # ------------------------------------------------------------------------------ metadata = dict( name = "bitstream", - version = "2.6.0.dev0", + version = "2.6....
fix warnings for Python <I> to <I>
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100755 --- a/setup.py +++ b/setup.py @@ -18,7 +18,7 @@ requires = [ setup( name='crabpy', - version='0.3.0', + version='0.3.1', description='Interact with AGIV webservices.', long_description=open('README.rst').read() + '\n\n' + ...
Bump master to <I>.
py
diff --git a/rewcore/__init__.py b/rewcore/__init__.py index <HASH>..<HASH> 100644 --- a/rewcore/__init__.py +++ b/rewcore/__init__.py @@ -1,4 +1,4 @@ from .lse import logsumexp, logsumexp_pair from .wham import wham_fi, wham_fk, wham_normalize - +from .dtram import log_nu_K_i_setter, log_nu_K_i_equation, f_i_equat...
[dTRAM] added API to __init__.py
py
diff --git a/binance/websockets.py b/binance/websockets.py index <HASH>..<HASH> 100644 --- a/binance/websockets.py +++ b/binance/websockets.py @@ -1,8 +1,4 @@ # coding=utf-8 -try: - import ujson as json -except ImportError: - import json import threading from autobahn.twisted.websocket import WebSocketClient...
Update import ujson, since it is already part of the requirements
py
diff --git a/genanki/model.py b/genanki/model.py index <HASH>..<HASH> 100644 --- a/genanki/model.py +++ b/genanki/model.py @@ -15,13 +15,13 @@ class Model: if isinstance(fields, list): self.fields = fields elif isinstance(fields, str): - self.fields = yaml.load(fields) + self.fields = yaml.fu...
Use yaml.full_load instead of yaml.load (#<I>) Plain `yaml.load` is deprecated in recent PyYAML versions and will throw a warning as-of PyYAML <I>.
py
diff --git a/mov.py b/mov.py index <HASH>..<HASH> 100755 --- a/mov.py +++ b/mov.py @@ -82,7 +82,7 @@ def create(): connection.text_factory = str cursor = connection.cursor() cursor.execute('DROP TABLE IF EXISTS Movies') - cursor.execute('''CREATE TABLE movies(name TEXT, path TEXT, size...
Fix only listing one file per movie; change table name
py
diff --git a/source/rafcon/gui/execution_log_viewer.py b/source/rafcon/gui/execution_log_viewer.py index <HASH>..<HASH> 100755 --- a/source/rafcon/gui/execution_log_viewer.py +++ b/source/rafcon/gui/execution_log_viewer.py @@ -166,5 +166,9 @@ def main(): if __name__ == "__main__": + from rafcon.gui.start import...
feat(external execution log viewer): use rafcon gui environment and style
py
diff --git a/yoconfigurator/dicts.py b/yoconfigurator/dicts.py index <HASH>..<HASH> 100644 --- a/yoconfigurator/dicts.py +++ b/yoconfigurator/dicts.py @@ -1,5 +1,16 @@ """Module for DotDict data structure and DotDict helpers.""" +try: + dict.iteritems +except AttributeError: + # Python 3 + def iteritems(d):...
add wrapper method to handle dict iter items differences in python2 and python3
py
diff --git a/pyoo.py b/pyoo.py index <HASH>..<HASH> 100644 --- a/pyoo.py +++ b/pyoo.py @@ -1829,7 +1829,7 @@ class Desktop(_UnoProxy): document = self._open_url(url) return SpreadsheetDocument(document) - def open_spreadsheet(self, path, as_template=False): + def open_spreadsheet(self, path, a...
Update pyoo.py Add read only option to open_spreadsheet()
py
diff --git a/wikipediaapi/wikipedia.py b/wikipediaapi/wikipedia.py index <HASH>..<HASH> 100644 --- a/wikipediaapi/wikipedia.py +++ b/wikipediaapi/wikipedia.py @@ -239,7 +239,8 @@ class Wikipedia(object): ): base_url = 'http://' + page.language + '.wikipedia.org/w/api.php' headers = { - ...
Accept gzip to become good client.
py
diff --git a/src/discoursegraphs/discoursegraph.py b/src/discoursegraphs/discoursegraph.py index <HASH>..<HASH> 100644 --- a/src/discoursegraphs/discoursegraph.py +++ b/src/discoursegraphs/discoursegraph.py @@ -536,11 +536,7 @@ class DiscourseDocumentGraph(MultiDiGraph): NOTE: This will only work if both graph...
merge_graphs() doesn't need to distinguish Tiger from other formats, cf. issue #<I>
py
diff --git a/warehouse/views.py b/warehouse/views.py index <HASH>..<HASH> 100644 --- a/warehouse/views.py +++ b/warehouse/views.py @@ -11,6 +11,7 @@ # limitations under the License. import collections +import gc from pyramid.httpexceptions import ( HTTPException, HTTPSeeOther, HTTPMovedPermanently, HTTPNotF...
Add gc.collect() to see if that fixes high memory growth (#<I>)
py
diff --git a/dvc/fs/base.py b/dvc/fs/base.py index <HASH>..<HASH> 100644 --- a/dvc/fs/base.py +++ b/dvc/fs/base.py @@ -300,10 +300,6 @@ class BaseFileSystem: if from_info.scheme != self.scheme: raise NotImplementedError - if to_info.scheme == self.scheme != "local": - self.copy...
fs.download: remove unused copy between same fs (#<I>)
py
diff --git a/bqplot/traits.py b/bqplot/traits.py index <HASH>..<HASH> 100644 --- a/bqplot/traits.py +++ b/bqplot/traits.py @@ -240,7 +240,7 @@ class NdArray(CInstance): dtype = 'date' else: dtype = a.dtype - return {'values': a.tolist(), 'type': dtype} + ...
Return an actually jsonable value from the NDarray trait's to_json
py
diff --git a/more_itertools/more.py b/more_itertools/more.py index <HASH>..<HASH> 100644 --- a/more_itertools/more.py +++ b/more_itertools/more.py @@ -1923,6 +1923,17 @@ def consecutive_groups(iterable, ordering=lambda x: x): ['i'] ['l', 'm', 'n', 'o', 'p'] + Each group of consecutive items is an...
Add note about out-of-order consumption
py
diff --git a/tower_cli/resources/workflow.py b/tower_cli/resources/workflow.py index <HASH>..<HASH> 100644 --- a/tower_cli/resources/workflow.py +++ b/tower_cli/resources/workflow.py @@ -179,6 +179,13 @@ class Resource(models.SurveyResource): labels = models.ManyToManyField('label', res_name='workflow') + a...
add ask-inventory-on-launch and ask-variables-on-launch to workflow
py
diff --git a/master/buildbot/changes/gitpoller.py b/master/buildbot/changes/gitpoller.py index <HASH>..<HASH> 100644 --- a/master/buildbot/changes/gitpoller.py +++ b/master/buildbot/changes/gitpoller.py @@ -65,7 +65,8 @@ class GitPoller(base.PollingChangeSource): if not os.path.exists(self.workdi...
Only checkout the proper branch in GitPoller
py
diff --git a/shinken/scheduler.py b/shinken/scheduler.py index <HASH>..<HASH> 100644 --- a/shinken/scheduler.py +++ b/shinken/scheduler.py @@ -506,7 +506,9 @@ class Scheduler: #Already launch checks should not be touch if c.status == 'scheduled': t_to_go = c.t_to_go - ...
Fix: bug in compensate time when thecore got event handler
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100755 --- a/setup.py +++ b/setup.py @@ -2,6 +2,7 @@ import os from setuptools import setup +import sys def read(fname): @@ -17,6 +18,10 @@ setup( author_email="srittau@rittau.biz", url="https://github.com/srittau/python-asserts", py_modules=...
[stubs] install alongside implementation
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -41,6 +41,8 @@ setup( 'pytest', 'pytest-cov', 'coveralls' + 'pylint', + 'flake8', ], 'docs': [ 'mock',
added pylint and flake8 to test requirements
py
diff --git a/bcbio/cwl/create.py b/bcbio/cwl/create.py index <HASH>..<HASH> 100644 --- a/bcbio/cwl/create.py +++ b/bcbio/cwl/create.py @@ -118,8 +118,12 @@ def _write_tool(step_dir, name, inputs, outputs, parallel, image, programs, "packages": [resolve_package(p) for p in programs]}) ...
CWL: keep cache hint for Arvados variant calling Provide improved caching and runtimes for Arvados runs by caching BAM files on run machines.
py
diff --git a/progressbar/bar.py b/progressbar/bar.py index <HASH>..<HASH> 100644 --- a/progressbar/bar.py +++ b/progressbar/bar.py @@ -99,9 +99,9 @@ class DefaultFdMixin(ProgressBarMixinBase): else: line = '\r' + line - try: + try: # pragma: no cover self.fd.write(lin...
added fallback for ASCII terminals
py
diff --git a/test/test_dev.py b/test/test_dev.py index <HASH>..<HASH> 100644 --- a/test/test_dev.py +++ b/test/test_dev.py @@ -75,7 +75,7 @@ def test_dev(capsys, basic_conf): # time_with_warnings failure case assert re.search("File.*time_exception.*RuntimeError", text, re.S) - assert re.search(r"Running ...
Fix tests vs. printing changes
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -1,6 +1,8 @@ #!/usr/bin/env python import sys +import logging + from setuptools import setup, find_packages from setuptools.command.test import test as TestCommand import pkg_resources @@ -31,9 +33,18 @@ extras_require ...
Support distribute, Fixes #<I>
py
diff --git a/django_prometheus/migrations.py b/django_prometheus/migrations.py index <HASH>..<HASH> 100644 --- a/django_prometheus/migrations.py +++ b/django_prometheus/migrations.py @@ -27,7 +27,8 @@ def ExportMigrations(): django_prometheus.apps.AppConfig. """ return - if 'default' in connections an...
Fix pep8 violation in <I>e3a0c.
py
diff --git a/djangosaml2/views.py b/djangosaml2/views.py index <HASH>..<HASH> 100644 --- a/djangosaml2/views.py +++ b/djangosaml2/views.py @@ -338,7 +338,14 @@ def assertion_consumer_service(request, if not relay_state: logger.warning('The RelayState parameter exists but is empty') relay_state = ...
Update to also address the other case where we check for safe redirect URLS
py
diff --git a/epc/client.py b/epc/client.py index <HASH>..<HASH> 100644 --- a/epc/client.py +++ b/epc/client.py @@ -110,7 +110,11 @@ class EPCClient(EPCCore): def close(self): """Close connection.""" - self.handler._recv_iter.stop() + try: + self.handler._recv_iter.stop() + ...
Fix EPCClient.close: do not fail when it is not used
py
diff --git a/calloway/settings.py b/calloway/settings.py index <HASH>..<HASH> 100644 --- a/calloway/settings.py +++ b/calloway/settings.py @@ -151,6 +151,7 @@ TINYMCE_DEFAULT_CONFIG = { 'theme_advanced_statusbar_location' : "bottom", 'width': "600", 'height': "600", + 'extended_valid_elements'': "img[...
added iframes to tinymce options
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -8,9 +8,9 @@ with open(path.join(this_directory, 'README.txt'), encoding='utf-8') as f: setup( name = "pyxid2", - version = "1.0.4", + version = "1.0.5", packages = find_packages(), - install_requires = [...
Updating the version string, requiring a newer version of ftd2xx.
py
diff --git a/installers/Windows/installer.py b/installers/Windows/installer.py index <HASH>..<HASH> 100644 --- a/installers/Windows/installer.py +++ b/installers/Windows/installer.py @@ -34,16 +34,15 @@ import tempfile import yarg -# Packages to remove from the requirements for example pip. Need also for -# packag...
Installer: Apply suggestions from code review
py
diff --git a/qds_sdk/cluster.py b/qds_sdk/cluster.py index <HASH>..<HASH> 100644 --- a/qds_sdk/cluster.py +++ b/qds_sdk/cluster.py @@ -159,7 +159,7 @@ class Cluster(Resource): " creating the cluster",) ec2_group.add_argument("--aws-region", d...
Add 'sa-east-1' to list of supported regions.
py
diff --git a/config/selenium_config.py b/config/selenium_config.py index <HASH>..<HASH> 100644 --- a/config/selenium_config.py +++ b/config/selenium_config.py @@ -90,6 +90,7 @@ with open(os.path.join(dirname, "./browsers.txt")) as browsers: continue # Skip comments and blank lines parts = line.sp...
Fixed a bug in the Selenium configuration. Forgot to add the capabilities when a browser is run locally. Oops...
py
diff --git a/ores/scorer_models/rev_id_scorer.py b/ores/scorer_models/rev_id_scorer.py index <HASH>..<HASH> 100644 --- a/ores/scorer_models/rev_id_scorer.py +++ b/ores/scorer_models/rev_id_scorer.py @@ -38,7 +38,7 @@ class RevIdScorer(ScorerModel): return { 'prediction': prediction, - ...
RevIdScorer now uses 'probability' when scoring rather than 'probabilities'
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -1,4 +1,4 @@ -from distutils.core import setup +from setuptools import setup setup( name = 'testrail',
Change setup from distutils to setuptools.
py
diff --git a/autopep8.py b/autopep8.py index <HASH>..<HASH> 100755 --- a/autopep8.py +++ b/autopep8.py @@ -167,6 +167,7 @@ def continued_indentation(logical_line, tokens, indent_level, noqa): last_token_multiline = None line = None + last_line = '' for token_type, text, start, end, line in tokens: ...
Catch all E<I> cases in a single pass This speeds things up and fixes #<I>.
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -4,7 +4,7 @@ from setuptools import setup, find_packages setup( name='Flask-GoogleMaps', - version='0.1.5', + version='0.1.6', license='MIT', description='Small extension for Flask to make using Google ...
upgrades to <I> and updated pipy fix: #<I>
py
diff --git a/creamas/core/environment.py b/creamas/core/environment.py index <HASH>..<HASH> 100644 --- a/creamas/core/environment.py +++ b/creamas/core/environment.py @@ -112,6 +112,16 @@ class Environment(Container): agents = [agent.addr for agent in agents] return agents + def get_agent(sel...
Added Enviroment.get_agent(addr) to conveniently retrieve single agents from the environment's agents dict.
py
diff --git a/heartbeat/heartbeat.py b/heartbeat/heartbeat.py index <HASH>..<HASH> 100644 --- a/heartbeat/heartbeat.py +++ b/heartbeat/heartbeat.py @@ -64,7 +64,7 @@ class Heartbeat(object): """ # Generate a series of seeds - seeds = self.gen_seeds(num, root_seed) + seeds = self.generat...
use new more descriptive generate_seeds call
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -1,11 +1,11 @@ import distutils.core -import mackup.main +import mackup.constants distutils.core.setup( name='Mackup', - version=mackup.main.VERSION, + version=mackup.constants.VERSION, author='Laurent ...
Fixed the version constant in setup.py
py
diff --git a/dallinger/experiment_server/gunicorn.py b/dallinger/experiment_server/gunicorn.py index <HASH>..<HASH> 100644 --- a/dallinger/experiment_server/gunicorn.py +++ b/dallinger/experiment_server/gunicorn.py @@ -60,7 +60,7 @@ class StandaloneServer(Application): config = get_config() workers = ...
Reduce default gunicorn worker count.
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -15,7 +15,7 @@ from distutils.core import setup setup(name='astral', - version='0.4', + version='0.5', description='Calculations for the position of the sun.', long_description="""Sun calculations for...
Changed version to <I>
py
diff --git a/examples/opf/experiments/anomaly/temporal/hotgym/description.py b/examples/opf/experiments/anomaly/temporal/hotgym/description.py index <HASH>..<HASH> 100644 --- a/examples/opf/experiments/anomaly/temporal/hotgym/description.py +++ b/examples/opf/experiments/anomaly/temporal/hotgym/description.py @@ -317,7...
change anomaly mode to 'likelihood' in hotgym example
py
diff --git a/tests/testextendmock.py b/tests/testextendmock.py index <HASH>..<HASH> 100644 --- a/tests/testextendmock.py +++ b/tests/testextendmock.py @@ -61,7 +61,7 @@ class TestMockSignature(TestCase): mock.reset() f2(1, 7) - mock.assert_called_with(1, 7 + mock.assert_cal...
Correct horrible error accidentally left in previous commit (this message genuine as previous commit with spurious message was a slip of the fingers...).
py
diff --git a/check_manifest.py b/check_manifest.py index <HASH>..<HASH> 100755 --- a/check_manifest.py +++ b/check_manifest.py @@ -935,7 +935,7 @@ def zest_releaser_check(data): return try: if not check_manifest(source_tree): - if not ask("MANIFEST.in is not in order. " + if...
Adjust wording of "MANIFEST.in is not in order" The old wording confused me for a moment ("why does MANIFEST.in need to be sorted in a particular way?")
py
diff --git a/setuptools/tests/test_namespaces.py b/setuptools/tests/test_namespaces.py index <HASH>..<HASH> 100644 --- a/setuptools/tests/test_namespaces.py +++ b/setuptools/tests/test_namespaces.py @@ -12,8 +12,10 @@ from setuptools.command import test class TestNamespaces: - @pytest.mark.xfail(sys.version_inf...
change formatting to fix flake8 warning
py
diff --git a/meshio/flac3d/_flac3d.py b/meshio/flac3d/_flac3d.py index <HASH>..<HASH> 100644 --- a/meshio/flac3d/_flac3d.py +++ b/meshio/flac3d/_flac3d.py @@ -325,6 +325,7 @@ def _write_cells(f, points, cells, binary): def _write_zgroups(f, cell_data, field_data, binary): """Write zone groups.""" + zgroups =...
fix flac3d with no int cell data
py
diff --git a/tests/interface/cli/exec_task_from_cli_test.py b/tests/interface/cli/exec_task_from_cli_test.py index <HASH>..<HASH> 100644 --- a/tests/interface/cli/exec_task_from_cli_test.py +++ b/tests/interface/cli/exec_task_from_cli_test.py @@ -43,6 +43,5 @@ class ExecTaskFromCliTestCase(ZslTestCase, TestCase): ...
Remove unnecessry print in tests
py
diff --git a/salt/config.py b/salt/config.py index <HASH>..<HASH> 100644 --- a/salt/config.py +++ b/salt/config.py @@ -1135,7 +1135,7 @@ def apply_vm_profiles_config(providers, overrides, defaults=None): vms = {} for key, val in config.items(): - if key in ('conf_file', 'include', 'default_include'):...
Filter the 'user' keyword from the config for cloud. When the tests aren't run as root, it goes around replacing/injecting a user config option for the user the tests are run as. This upsets cloud, so we'll filter it out like default_include and similar get filtered.
py
diff --git a/AlphaTwirl/ProgressBar/ProgressMonitor.py b/AlphaTwirl/ProgressBar/ProgressMonitor.py index <HASH>..<HASH> 100755 --- a/AlphaTwirl/ProgressBar/ProgressMonitor.py +++ b/AlphaTwirl/ProgressBar/ProgressMonitor.py @@ -15,8 +15,12 @@ class ProgressMonitor(object): def __init__(self, presentation): ...
add new methods in ProgressMonitor
py
diff --git a/basis_set_exchange/printing.py b/basis_set_exchange/printing.py index <HASH>..<HASH> 100644 --- a/basis_set_exchange/printing.py +++ b/basis_set_exchange/printing.py @@ -81,8 +81,12 @@ def electron_shell_str(shell, shellidx=None): coefficients = shell['coefficients'] ncol = len(coefficients) + 1 ...
Small improvements to bsedebug output
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -1,5 +1,8 @@ from setuptools import setup -from pip.req import parse_requirements +try: # for pip >= 10 + from pip._internal.req import parse_requirements +except ImportError: # for pip <= 9.0.3 + from pip.req import pa...
Fixed conflict with pip>=<I> in setup.py
py
diff --git a/greg/greg.py b/greg/greg.py index <HASH>..<HASH> 100755 --- a/greg/greg.py +++ b/greg/greg.py @@ -404,7 +404,7 @@ def check(args): name = args["feed"] try: podcast = feedparser.parse(url) - wentwrong = "urlopen" in podcast["bozo_exception"] + wentwrong = "urlopen" in st...
wentwrong in check() was wrong
py
diff --git a/src/hamster/lib/graphics.py b/src/hamster/lib/graphics.py index <HASH>..<HASH> 100644 --- a/src/hamster/lib/graphics.py +++ b/src/hamster/lib/graphics.py @@ -1859,7 +1859,7 @@ class Scene(Parent, gtk.DrawingArea): def __setattr__(self, name, val): - if self.__dict__.get(name, "hamster_graph...
change `==` to `is` in __set_attr__ Using `==` could yield puzzling behavior in subclasses. This should be safer. cf. <URL>
py
diff --git a/angr/analyses/cfg/cfg_fast.py b/angr/analyses/cfg/cfg_fast.py index <HASH>..<HASH> 100644 --- a/angr/analyses/cfg/cfg_fast.py +++ b/angr/analyses/cfg/cfg_fast.py @@ -1676,7 +1676,10 @@ class CFGFast(ForwardAnalysis, CFGBase): # pylint: disable=abstract-method for ins_regex in self.project.arch....
Reword; the hack I think is gross is now the hack we're living with. Isn't ARM great folks?
py
diff --git a/telethon/telegram_client.py b/telethon/telegram_client.py index <HASH>..<HASH> 100644 --- a/telethon/telegram_client.py +++ b/telethon/telegram_client.py @@ -967,7 +967,11 @@ class TelegramClient(TelegramBareClient): called automatically on connection if self.updates.enabled = True, ...
Fix process_updates=True preventing new sessions from signing in
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -2,7 +2,7 @@ from setuptools import setup setup( name="Jigsaw", - version="1.1.0", + version="2.0.0", packages=["jigsaw", ], license="MIT", description="A plugin framework for Python3.6+",
Updated version number in setup.py
py
diff --git a/src/app/actions/mslookup/searchspace.py b/src/app/actions/mslookup/searchspace.py index <HASH>..<HASH> 100644 --- a/src/app/actions/mslookup/searchspace.py +++ b/src/app/actions/mslookup/searchspace.py @@ -4,7 +4,7 @@ PROTEIN_STORE_CHUNK_SIZE = 100000 def create_searchspace_wholeproteins(lookup, fastafn...
Do not forget to switch L to I when building DB
py
diff --git a/dragnet/model_training.py b/dragnet/model_training.py index <HASH>..<HASH> 100644 --- a/dragnet/model_training.py +++ b/dragnet/model_training.py @@ -214,7 +214,9 @@ def evaluate_models_tokens(datadir, dragnet_model, figname_root=None, gold_standard_tokens = {} for fname, froot in all_files: - ...
Exclude empty documents in evaluation (consistent with Weninger et al <I>)
py
diff --git a/bulrush/license_generator.py b/bulrush/license_generator.py index <HASH>..<HASH> 100644 --- a/bulrush/license_generator.py +++ b/bulrush/license_generator.py @@ -1,4 +1,4 @@ -from collections import Mapping +from collections.abc import Mapping import re _HTML = '''
Import Mapping ABC from collections.abc The aliases for the ABCs in collections were deprecated, and have been removed in Python <I>: <URL>
py
diff --git a/tap/__init__.py b/tap/__init__.py index <HASH>..<HASH> 100644 --- a/tap/__init__.py +++ b/tap/__init__.py @@ -3,4 +3,4 @@ from .runner import TAPTestRunner __all__ = ['TAPTestRunner'] -__version__ = '2.1' +__version__ = '2.2'
Bump the version number to <I>.
py
diff --git a/tibber/__init__.py b/tibber/__init__.py index <HASH>..<HASH> 100644 --- a/tibber/__init__.py +++ b/tibber/__init__.py @@ -263,7 +263,6 @@ class TibberHome: async def fetch_consumption_data(self): """Update consumption info async.""" - # pylint: disable=consider-using-f-string) ...
pylint fix (#<I>)
py
diff --git a/pygcgen/generator.py b/pygcgen/generator.py index <HASH>..<HASH> 100644 --- a/pygcgen/generator.py +++ b/pygcgen/generator.py @@ -918,11 +918,13 @@ class Generator(object): and self.options.future_release: newer_tag_name = self.options.future_release newer_tag_link = ...
fix link generation for unreleased section
py