diff stringlengths 139 3.65k | message stringlengths 8 627 | diff_languages stringclasses 1
value |
|---|---|---|
diff --git a/ipyrad/assemble/rawedit.py b/ipyrad/assemble/rawedit.py
index <HASH>..<HASH> 100644
--- a/ipyrad/assemble/rawedit.py
+++ b/ipyrad/assemble/rawedit.py
@@ -596,14 +596,15 @@ def concat_multiple_inputs(data, sample):
## Only set conc2 if R2 actually exists
conc2 = 0
- if os.path.exi... | Better testing for existence of all R2 files for merged assemblies. | py |
diff --git a/gbdxtools/ipe/io.py b/gbdxtools/ipe/io.py
index <HASH>..<HASH> 100644
--- a/gbdxtools/ipe/io.py
+++ b/gbdxtools/ipe/io.py
@@ -1,6 +1,8 @@
import rasterio
+import numpy as np
def to_geotiff(arr, path='./output.tif', proj=None, dtype=None):
+ dtype = np.dtype(dtype)
data = arr.read()
c,h,w =... | fixing to_geotif to support dtypes | py |
diff --git a/docs/conf.py b/docs/conf.py
index <HASH>..<HASH> 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -15,6 +15,7 @@ from __future__ import print_function
import logging
import sys
import os
+import re
logging.basicConfig()
@@ -72,10 +73,16 @@ copyright = u'2017, Mike Boers'
# |version| and |release|, ... | Docs pull version from setup.py. | py |
diff --git a/salt/client/ssh/ssh_py_shim.py b/salt/client/ssh/ssh_py_shim.py
index <HASH>..<HASH> 100644
--- a/salt/client/ssh/ssh_py_shim.py
+++ b/salt/client/ssh/ssh_py_shim.py
@@ -18,8 +18,7 @@ import stat
THIN_ARCHIVE = 'salt-thin.tgz'
EXT_ARCHIVE = 'salt-ext_mods.tgz'
-# FIXME - it would be ideal if these coul... | Correct comment. Keep in sync with exitcodes.py | py |
diff --git a/sumologic/sumologic.py b/sumologic/sumologic.py
index <HASH>..<HASH> 100644
--- a/sumologic/sumologic.py
+++ b/sumologic/sumologic.py
@@ -56,6 +56,12 @@ class SumoLogic(object):
r.raise_for_status()
return r
+ def post_with_file(self, method, filename, headers=None):
+ content... | Method to create a collector with a file | py |
diff --git a/distutils/tests/test_dir_util.py b/distutils/tests/test_dir_util.py
index <HASH>..<HASH> 100644
--- a/distutils/tests/test_dir_util.py
+++ b/distutils/tests/test_dir_util.py
@@ -1,5 +1,4 @@
"""Tests for distutils.dir_util."""
-import unittest
import os
import stat
import sys
@@ -53,10 +52,7 @@ class Te... | Prefer pytest for skip | py |
diff --git a/setup.py b/setup.py
index <HASH>..<HASH> 100755
--- a/setup.py
+++ b/setup.py
@@ -124,8 +124,8 @@ def get_version_info():
vinfo = _version_helper.generate_git_version_info()
except:
vinfo = vdummy()
- vinfo.version = '1.16.11'
- vinfo.release = 'True'
+ vinfo.ver... | set back to development (#<I>) | py |
diff --git a/src/hieroglyph/__init__.py b/src/hieroglyph/__init__.py
index <HASH>..<HASH> 100644
--- a/src/hieroglyph/__init__.py
+++ b/src/hieroglyph/__init__.py
@@ -75,6 +75,12 @@ def setup(app):
app.connect('builder-inited', html.inspect_config)
app.connect('html-page-context', html.add_link)
+ return... | Enable parallel reading of source files with Sphinx (#<I>) | py |
diff --git a/tests/connection/test_array_connection.py b/tests/connection/test_array_connection.py
index <HASH>..<HASH> 100644
--- a/tests/connection/test_array_connection.py
+++ b/tests/connection/test_array_connection.py
@@ -258,10 +258,18 @@ def describe_connection_from_array():
)
def returns... | Test that from_global_id handles invalid code point Replicates graphql/graphql-relay-js@<I>b<I>cdde9a<I>a<I>da<I>d8d3bf | py |
diff --git a/src/scs_core/__init__.py b/src/scs_core/__init__.py
index <HASH>..<HASH> 100644
--- a/src/scs_core/__init__.py
+++ b/src/scs_core/__init__.py
@@ -6,4 +6,4 @@ Created on 3 May 2021
https://packaging.python.org/guides/single-sourcing-package-version/
"""
-__version__ = '1.1.11'
+__version__ = '1.1.12' | Added text standardisation to aws_project.py | py |
diff --git a/raiden/app.py b/raiden/app.py
index <HASH>..<HASH> 100644
--- a/raiden/app.py
+++ b/raiden/app.py
@@ -44,10 +44,8 @@ class App(object): # pylint: disable=too-few-public-methods
config,
)
self.services = {'raiden': self.raiden}
- if self.config['console']:
- ... | Removed if statement I removed the if statement to make it more clear what was going on and easier to read after Augusto pointed this out | py |
diff --git a/great_expectations/datasource/sparkdf_datasource.py b/great_expectations/datasource/sparkdf_datasource.py
index <HASH>..<HASH> 100644
--- a/great_expectations/datasource/sparkdf_datasource.py
+++ b/great_expectations/datasource/sparkdf_datasource.py
@@ -271,8 +271,8 @@ class SparkDFDatasource(LegacyDatasou... | Support avro format in Spark datasource (#<I>) | py |
diff --git a/horizon/tables/base.py b/horizon/tables/base.py
index <HASH>..<HASH> 100644
--- a/horizon/tables/base.py
+++ b/horizon/tables/base.py
@@ -357,14 +357,12 @@ class Column(html.HTMLElement):
data = datum.get(self.transform)
else:
# Basic object lookups
- try:
- ... | Missing default value on horizon.tables Column There was a getattr in the Column class, get_raw_data method that was missing a default value, thus spamming the logs with warnings. Now it will only log if debug is enabled Change-Id: I8bff<I>b8cb0f<I>d<I>f<I>bbcc<I>a<I> Closes-Bug: #<I> | py |
diff --git a/src/ikpy/URDF_utils.py b/src/ikpy/URDF_utils.py
index <HASH>..<HASH> 100644
--- a/src/ikpy/URDF_utils.py
+++ b/src/ikpy/URDF_utils.py
@@ -24,16 +24,19 @@ def find_next_joint(root, current_link, next_joint_name):
search_by_name = True
if next_joint_name is None:
- # If no next joint is pr... | Fix error when base_elements is changed in place + Add an exception for empty base elements | py |
diff --git a/metanl/wordlist.py b/metanl/wordlist.py
index <HASH>..<HASH> 100644
--- a/metanl/wordlist.py
+++ b/metanl/wordlist.py
@@ -198,10 +198,7 @@ def get_frequency(word, lang, default_freq=0, scale=1e9):
"but %r contains a space" % word)
lookup = preprocess_text(word).lower()
- ... | Significant speedup to get_frequency(). "in" seems to be badly implemented for Wordlist objects, so this change removes the check "if <word> in <Wordlist>", and just uses Wordlist[<word>], which is zero if <word> isn't in the Wordlist. | py |
diff --git a/modularodm/fields/listfield.py b/modularodm/fields/listfield.py
index <HASH>..<HASH> 100644
--- a/modularodm/fields/listfield.py
+++ b/modularodm/fields/listfield.py
@@ -166,6 +166,8 @@ class ListField(Field):
return []
def update_backrefs(self, instance, cached_value, current_value):
+ ... | Bail early in update_backrefs if the underlying field_instance does not have a backref bail early. There is no point in iterating over all the values. | py |
diff --git a/src/transformers/pipelines.py b/src/transformers/pipelines.py
index <HASH>..<HASH> 100755
--- a/src/transformers/pipelines.py
+++ b/src/transformers/pipelines.py
@@ -959,7 +959,7 @@ class ZeroShotClassificationPipeline(Pipeline):
top_inds = list(reversed(scores[iseq].argsort()))
r... | Fix zero-shot pipeline single seq output shape (#<I>) | py |
diff --git a/blockstack/lib/operations/update.py b/blockstack/lib/operations/update.py
index <HASH>..<HASH> 100644
--- a/blockstack/lib/operations/update.py
+++ b/blockstack/lib/operations/update.py
@@ -49,8 +49,7 @@ FIELDS = NAMEREC_FIELDS + [
# fields this operation mutates
MUTATE_FIELDS = NAMEREC_MUTATE_FIELDS + [... | Preserve sender_pubkey on update | py |
diff --git a/wikitextparser/argument.py b/wikitextparser/argument.py
index <HASH>..<HASH> 100644
--- a/wikitextparser/argument.py
+++ b/wikitextparser/argument.py
@@ -47,8 +47,22 @@ class Argument():
position = 1
godstring = self._lststr[0]
for ss, se in self._spans[self._typeindex][:self._in... | Rewrite the `name` property as a fix for the test that fails | py |
diff --git a/src/nupic/regions/record_sensor.py b/src/nupic/regions/record_sensor.py
index <HASH>..<HASH> 100644
--- a/src/nupic/regions/record_sensor.py
+++ b/src/nupic/regions/record_sensor.py
@@ -379,7 +379,8 @@ class RecordSensor(PyRegion):
# If there is a field to predict, set bucketIdxOut and actValueOut... | Make sure we include disabled encoders when looking up predicted field | py |
diff --git a/binstar_client/inspect_package/ipynb.py b/binstar_client/inspect_package/ipynb.py
index <HASH>..<HASH> 100644
--- a/binstar_client/inspect_package/ipynb.py
+++ b/binstar_client/inspect_package/ipynb.py
@@ -8,11 +8,7 @@ class IPythonNotebook(object):
self.name = content['metadata']['name'] or filen... | Small rewrite #<I> | py |
diff --git a/blanc_basic_news/news/views.py b/blanc_basic_news/news/views.py
index <HASH>..<HASH> 100644
--- a/blanc_basic_news/news/views.py
+++ b/blanc_basic_news/news/views.py
@@ -27,12 +27,12 @@ class PostListCategoryView(PostListView):
class PostListMonthView(MonthArchiveView):
- queryset = Post.objects.fi... | Add .select_related() to month/detail views as well | py |
diff --git a/scapy/layers/l2.py b/scapy/layers/l2.py
index <HASH>..<HASH> 100644
--- a/scapy/layers/l2.py
+++ b/scapy/layers/l2.py
@@ -50,6 +50,7 @@ def getmacbyip(ip, chainCC=0):
"""Return MAC address corresponding to a given IP address"""
if isinstance(ip,Net):
ip = iter(ip).next()
+ ip = inet_n... | Ensure that the 'ip' variable contains a valid IP address --HG-- branch : Issue #<I> - 2 | py |
diff --git a/src/app/drivers/merge.py b/src/app/drivers/merge.py
index <HASH>..<HASH> 100644
--- a/src/app/drivers/merge.py
+++ b/src/app/drivers/merge.py
@@ -82,6 +82,7 @@ class MergeDriver(base.PepProttableDriver):
channels = [x for x in self.lookup.get_isoquant_headernames(stored_psmnrs)]
f... | Header in merge should be all channels for each set, then all PSM nrs | py |
diff --git a/pymake/solution.py b/pymake/solution.py
index <HASH>..<HASH> 100644
--- a/pymake/solution.py
+++ b/pymake/solution.py
@@ -56,7 +56,11 @@ class PymakeSolution(PyWritable):
f.write( '# Visual Studio 14\n' )
f.write( 'VisualStudioVersion = 14.0.23107.0\n' )
f... | Updated solution template for VS <I> solutions. | py |
diff --git a/cli/cumulusci.py b/cli/cumulusci.py
index <HASH>..<HASH> 100644
--- a/cli/cumulusci.py
+++ b/cli/cumulusci.py
@@ -162,9 +162,9 @@ def ci_deploy(config):
if config.build_type == 'feature':
click.echo('-- Building with feature branch flow')
- config.sf_username = os.environ.get... | Use config.feature_org_suffix to get credentials for feature build in cumulusci ci deploy | py |
diff --git a/rinoh/backend/pdf/cos.py b/rinoh/backend/pdf/cos.py
index <HASH>..<HASH> 100644
--- a/rinoh/backend/pdf/cos.py
+++ b/rinoh/backend/pdf/cos.py
@@ -95,8 +95,13 @@ class Reference(object):
return self.document[self.identifier]
def bytes(self, document):
- return '{} {} R'.format(self.id... | PDF backend: fix inclusion of another PDF (XObjectForm) | py |
diff --git a/pygccxml/parser/etree_scanner.py b/pygccxml/parser/etree_scanner.py
index <HASH>..<HASH> 100644
--- a/pygccxml/parser/etree_scanner.py
+++ b/pygccxml/parser/etree_scanner.py
@@ -4,7 +4,7 @@
# See http://www.boost.org/LICENSE_1_0.txt
# keep py2exe happy
-import xml.etree.ElementTree
+import xml.etree.El... | Ignore pylint warning about unused import The bug is still open on the pyexe bug tracker so I'll keep that hack around so that people's code/setups don't break. | py |
diff --git a/tests/test_licensing.py b/tests/test_licensing.py
index <HASH>..<HASH> 100644
--- a/tests/test_licensing.py
+++ b/tests/test_licensing.py
@@ -21,7 +21,7 @@ def test_py_boilerplate_conversion(py_truth):
def test_py_boilerplate_rerun(py_truth):
"""Verify that the conversion doesn't change converted d... | Need to ignore first argument, not just drop it. | py |
diff --git a/mot/evaluation_models.py b/mot/evaluation_models.py
index <HASH>..<HASH> 100644
--- a/mot/evaluation_models.py
+++ b/mot/evaluation_models.py
@@ -51,6 +51,19 @@ class EvaluationModel(ModelFunction):
double <fname>(const optimize_data* const data, model_float* const x);
"""
+ ... | Adds method to set the noise level standard deviation in the evaluation models | py |
diff --git a/Mixtape/featurizer.py b/Mixtape/featurizer.py
index <HASH>..<HASH> 100644
--- a/Mixtape/featurizer.py
+++ b/Mixtape/featurizer.py
@@ -89,7 +89,7 @@ def load(filename):
return featurizer
-class Featurizer(sklearn.base.TransformerMixin):
+class Featurizer(sklearn.base.BaseEstimator, sklearn.base.Tra... | Make featurizers inherit base estimators? | py |
diff --git a/pandas/core/generic.py b/pandas/core/generic.py
index <HASH>..<HASH> 100644
--- a/pandas/core/generic.py
+++ b/pandas/core/generic.py
@@ -10861,6 +10861,7 @@ class NDFrame(PandasObject, SelectionMixin, indexing.IndexingMixin):
cls.all = all # type: ignore[assignment]
@doc(
+ ... | remove unnecessary use of Appender (#<I>) | py |
diff --git a/nailgun/entities.py b/nailgun/entities.py
index <HASH>..<HASH> 100644
--- a/nailgun/entities.py
+++ b/nailgun/entities.py
@@ -831,6 +831,7 @@ class ContentViewVersion(Entity, EntityReadMixin, EntityDeleteMixin):
def __init__(self, server_config=None, **kwargs):
self._fields = {
+ ... | Fix bug with ContentView and ContentViewVersion The `ContentView.component` field points to a content view version, not a content view. The `ContentViewVersion` entity has a "content_view" attribute. Fix both of these discrepancies. | py |
diff --git a/satpy/tests/compositor_tests/test_viirs.py b/satpy/tests/compositor_tests/test_viirs.py
index <HASH>..<HASH> 100644
--- a/satpy/tests/compositor_tests/test_viirs.py
+++ b/satpy/tests/compositor_tests/test_viirs.py
@@ -138,8 +138,8 @@ class TestVIIRSComposites(unittest.TestCase):
(-20037508.34,... | Fix style issues in viirs composite tests | py |
diff --git a/greenhouse/io.py b/greenhouse/io.py
index <HASH>..<HASH> 100644
--- a/greenhouse/io.py
+++ b/greenhouse/io.py
@@ -318,6 +318,12 @@ class FileBase(object):
buf.seek(0, os.SEEK_END)
collected = buf.tell()
+ if size >= 0 and collected:
+ rc = buf.getvalue()
+ b... | if we have /anything/ return it immediately in case the i/o read would block | py |
diff --git a/IndexedRedis/fields/__init__.py b/IndexedRedis/fields/__init__.py
index <HASH>..<HASH> 100644
--- a/IndexedRedis/fields/__init__.py
+++ b/IndexedRedis/fields/__init__.py
@@ -280,7 +280,7 @@ class IRField(str):
return ''.join(ret)
- def __new__(self, name='', valueType=None, hashIndex=False):
+ def... | Fix constructing IRField with a defaultValue defined | py |
diff --git a/mangopay/api.py b/mangopay/api.py
index <HASH>..<HASH> 100644
--- a/mangopay/api.py
+++ b/mangopay/api.py
@@ -1,4 +1,5 @@
# -*- coding: utf-8 -*-
+from __future__ import print_function
from __future__ import unicode_literals
import requests
@@ -154,7 +155,9 @@ class APIRequest(object):
... | Added print statement to debug using logs. | py |
diff --git a/spikeextractors/extractors/neuroscopeextractors/neuroscopeextractors.py b/spikeextractors/extractors/neuroscopeextractors/neuroscopeextractors.py
index <HASH>..<HASH> 100644
--- a/spikeextractors/extractors/neuroscopeextractors/neuroscopeextractors.py
+++ b/spikeextractors/extractors/neuroscopeextractors/n... | Update spikeextractors/extractors/neuroscopeextractors/neuroscopeextractors.py | py |
diff --git a/setup.py b/setup.py
index <HASH>..<HASH> 100644
--- a/setup.py
+++ b/setup.py
@@ -1,7 +1,7 @@
from distutils.core import setup
setup(name='gpiocrust',
- version='0.1',
+ version='1.0',
description='A pythonic wrapper around RPi.GPIO',
author='zourtney',
author_email='zour... | Version bump to <I> (RC) | py |
diff --git a/cnxarchive/search.py b/cnxarchive/search.py
index <HASH>..<HASH> 100644
--- a/cnxarchive/search.py
+++ b/cnxarchive/search.py
@@ -59,7 +59,7 @@ QUERY_FIELD_PAIR_SEPARATOR = '-::-'
SET_OPERATORS = ('OR', 'AND', 'NOT',)
QUERY_TYPES = ('OR', 'AND', 'weakAND',)
-DEFAULT_QUERY_TYPE = SET_OPERATORS[0]
+DEFAU... | Changes the default query type to weak and. | py |
diff --git a/pyspectator/temperature_reader.py b/pyspectator/temperature_reader.py
index <HASH>..<HASH> 100644
--- a/pyspectator/temperature_reader.py
+++ b/pyspectator/temperature_reader.py
@@ -46,7 +46,7 @@ class LinuxCpuTemperatureReader():
class WindowsCpuTemperatureReader():
@classmethod
- def get_reade... | Update temperature_reader.py The get_reader method of the WindowsTemp class can't accept the argument given, but adding cls fixes it. | py |
diff --git a/will/backends/io_adapters/slack.py b/will/backends/io_adapters/slack.py
index <HASH>..<HASH> 100644
--- a/will/backends/io_adapters/slack.py
+++ b/will/backends/io_adapters/slack.py
@@ -353,7 +353,7 @@ class SlackBackend(IOBackend, SleepMixin, StorageMixin):
})
if hasattr(event, "kwargs")... | Change parse option from full to none in Slack, this will not format html messages | py |
diff --git a/src/sos/workflow_executor.py b/src/sos/workflow_executor.py
index <HASH>..<HASH> 100755
--- a/src/sos/workflow_executor.py
+++ b/src/sos/workflow_executor.py
@@ -1681,7 +1681,7 @@ class Base_Executor:
dag.save(env.config['output_dag'])
exec_error.append(run... | Make the main run() function easier to read | py |
diff --git a/canmatrix/exportkcd.py b/canmatrix/exportkcd.py
index <HASH>..<HASH> 100644
--- a/canmatrix/exportkcd.py
+++ b/canmatrix/exportkcd.py
@@ -45,8 +45,6 @@ def createSignal(signal, nodeList):
value = etree.Element('Value')
if signal._is_signed:
value.set('type',"signed")
- else:
- ... | for kcd, do not set type to unsigned, as this is the default value type | py |
diff --git a/symfit/contrib/interactive_guess/tests/tests.py b/symfit/contrib/interactive_guess/tests/tests.py
index <HASH>..<HASH> 100644
--- a/symfit/contrib/interactive_guess/tests/tests.py
+++ b/symfit/contrib/interactive_guess/tests/tests.py
@@ -72,12 +72,14 @@ class Gaussian2DInteractiveGuessTest(unittest.TestCas... | Updated a test to reflect changes made in 9e<I>b<I> | py |
diff --git a/examples/pytorch_hpc_example.py b/examples/pytorch_hpc_example.py
index <HASH>..<HASH> 100644
--- a/examples/pytorch_hpc_example.py
+++ b/examples/pytorch_hpc_example.py
@@ -3,8 +3,7 @@ from test_tube import Experiment, HyperOptArgumentParser, SlurmCluster
"""
-This script demonstrates how to do a hyp... | added pytorch exp | py |
diff --git a/twarc.py b/twarc.py
index <HASH>..<HASH> 100755
--- a/twarc.py
+++ b/twarc.py
@@ -785,18 +785,21 @@ class Twarc(object):
if recursive:
if reply['id_str'] != _ignore:
- yield from self.replies(reply, recursive)
+ for r in self.replies(rep... | yield from not available in python<I> | py |
diff --git a/tornado/stack_context.py b/tornado/stack_context.py
index <HASH>..<HASH> 100644
--- a/tornado/stack_context.py
+++ b/tornado/stack_context.py
@@ -93,16 +93,13 @@ def NullContext():
finally:
_state.contexts = old_contexts
-def wrap(fn, *args, **kwargs):
+def wrap(fn):
'''Returns a calla... | Remove the ability to pre-bind parameters in stack_context.wrap. This functionality was incorrect and unused, and unlike async_callback, I don't think the implicit binding is a good fit for this API. | py |
diff --git a/insights/client/connection.py b/insights/client/connection.py
index <HASH>..<HASH> 100644
--- a/insights/client/connection.py
+++ b/insights/client/connection.py
@@ -293,7 +293,7 @@ class InsightsConnection(object):
logger.debug(e)
logger.error('Failed to connect to proxy ... | send bytes over socket (#<I>) | py |
diff --git a/pyxmpp2/transport.py b/pyxmpp2/transport.py
index <HASH>..<HASH> 100644
--- a/pyxmpp2/transport.py
+++ b/pyxmpp2/transport.py
@@ -833,10 +833,18 @@ class TCPTransport(XMPPTransport, IOHandler):
"""
IN_LOGGER.debug("IN: %r", data)
if data:
- self._reader.feed(data)
+ ... | Release the lock when feeding the parser Release TCPTransport.lock when feeding the parser, it may call code which may want to use the transport too. | py |
diff --git a/notario/engine.py b/notario/engine.py
index <HASH>..<HASH> 100644
--- a/notario/engine.py
+++ b/notario/engine.py
@@ -34,7 +34,8 @@ class Validator(object):
tree.append(key)
if isinstance(value, dict):
self.traverser(value, svalue, tree)
- tree.pop(... | we probably don't pop ever after recursing | py |
diff --git a/src/python/dxpy/utils/describe.py b/src/python/dxpy/utils/describe.py
index <HASH>..<HASH> 100644
--- a/src/python/dxpy/utils/describe.py
+++ b/src/python/dxpy/utils/describe.py
@@ -378,7 +378,7 @@ def print_data_obj_desc(desc, verbose=False):
if desc["class"] == "file" or desc["class"] ==... | PTFM-<I>-sidenote: adding delimiter between size string and "sponsored by DNAnexus" string | py |
diff --git a/setup.py b/setup.py
index <HASH>..<HASH> 100644
--- a/setup.py
+++ b/setup.py
@@ -24,7 +24,6 @@ setup(name='gluish',
package_dir={'gluish': 'gluish'},
install_requires=[
'BeautifulSoup==3.2.1',
- 'MySQL-python==1.2.5',
'astroid>=1.0.1',
'colorama==0.3.3',
... | Put sqlitebck and MySQL dependency in extras section | py |
diff --git a/tests/conftest.py b/tests/conftest.py
index <HASH>..<HASH> 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -368,8 +368,17 @@ def pytest_runtest_setup(item):
skip_if_not_root_marker = item.get_closest_marker('skip_if_not_root')
if skip_if_not_root_marker is not None or _has_unittest_at... | The `skip_if_not_root` pytest marker is now windows compatible | py |
diff --git a/blockstack_cli_0.14.1/blockstack_client/profile.py b/blockstack_cli_0.14.1/blockstack_client/profile.py
index <HASH>..<HASH> 100644
--- a/blockstack_cli_0.14.1/blockstack_client/profile.py
+++ b/blockstack_cli_0.14.1/blockstack_client/profile.py
@@ -79,6 +79,15 @@ def load_name_zonefile(name, expected_zone... | check that drivers return *serialized* zonefiles | py |
diff --git a/alot/helper.py b/alot/helper.py
index <HASH>..<HASH> 100644
--- a/alot/helper.py
+++ b/alot/helper.py
@@ -44,7 +44,7 @@ def pretty_datetime(d):
def cmd_output(command_line):
- args = shlex.split(command_line)
+ args = shlex.split(command_line.encode('ascii', errors='ignore'))
try:
... | shlex and unicode (needs ascii) | py |
diff --git a/umap/parametric_umap.py b/umap/parametric_umap.py
index <HASH>..<HASH> 100644
--- a/umap/parametric_umap.py
+++ b/umap/parametric_umap.py
@@ -354,6 +354,11 @@ class ParametricUMAP(UMAP):
if len(self.dims) > 1:
X = np.reshape(X, [len(X)] + list(self.dims))
+ if self.pa... | added error message back in for easier merge | py |
diff --git a/ipyrad/core/params.py b/ipyrad/core/params.py
index <HASH>..<HASH> 100644
--- a/ipyrad/core/params.py
+++ b/ipyrad/core/params.py
@@ -42,7 +42,7 @@ class Hackers(object):
("demultiplex_on_i7_tags", False),
("declone_PCR_duplicates", False),
("merge_technical_replicate... | Make hackersonly.exclude_reference default to True, since in most cases the reference sequence isn't 'real' data, and people won't want it included in downstream. | py |
diff --git a/datatableview/datatables.py b/datatableview/datatables.py
index <HASH>..<HASH> 100644
--- a/datatableview/datatables.py
+++ b/datatableview/datatables.py
@@ -574,7 +574,7 @@ class Datatable(six.with_metaclass(DatatableMetaclass)):
'_extra_data': self.get_extra_record_data(obj),
}
... | Consult column class for processor kwargs This should ensure that column flags like ``localize`` get forwarded to a processor callable | py |
diff --git a/visidata/shell.py b/visidata/shell.py
index <HASH>..<HASH> 100644
--- a/visidata/shell.py
+++ b/visidata/shell.py
@@ -236,14 +236,14 @@ def copy_files(sheet, paths, dest):
destdir = Path(dest)
destdir.is_dir() or vd.fail('target must be directory')
vd.status('copying %s %s to %s' % (len(path... | [shell-] fix copy-files | py |
diff --git a/src/lib/interface.py b/src/lib/interface.py
index <HASH>..<HASH> 100644
--- a/src/lib/interface.py
+++ b/src/lib/interface.py
@@ -432,16 +432,22 @@ class XInterfaceBase(threading.Thread):
if offset == 0:
self.__sendKeyCode(keyCode, theWindow=focus)
... | Press and release modifier keys when transmitting shifted symbols. This will hopefully fix issues with Wine and other applications that are not recognising shifted characters from AutoKey. git-svn-id: <URL> | py |
diff --git a/setup.py b/setup.py
index <HASH>..<HASH> 100755
--- a/setup.py
+++ b/setup.py
@@ -8,7 +8,6 @@ setup(
author = "Bram Schoenmakers",
author_email = "me@bramschoenmakers.nl",
url = "https://github.com/bram85/topydo",
- download_url = "https://github.com/bram85/topydo/archive/stable.zip",
... | Remove download_url from setup.py. | py |
diff --git a/authomatic/providers/oauth2.py b/authomatic/providers/oauth2.py
index <HASH>..<HASH> 100644
--- a/authomatic/providers/oauth2.py
+++ b/authomatic/providers/oauth2.py
@@ -795,7 +795,8 @@ class Facebook(OAuth2):
location=True,
name=True,
picture=True,
- timezone=True
+ ... | Make sure the username is not marked as supported | py |
diff --git a/dsdev_utils/paths.py b/dsdev_utils/paths.py
index <HASH>..<HASH> 100644
--- a/dsdev_utils/paths.py
+++ b/dsdev_utils/paths.py
@@ -78,7 +78,7 @@ def remove_any(path):
class ChDir(object):
def __init__(self, path):
- if six.PY2 or sys.version_info[1] == 5:
+ if six.PY2 or sys.version_in... | reg path for python <I> and <I> | py |
diff --git a/docker/api/container.py b/docker/api/container.py
index <HASH>..<HASH> 100644
--- a/docker/api/container.py
+++ b/docker/api/container.py
@@ -100,7 +100,7 @@ class ContainerApiMixin(object):
DeprecationWarning
)
res = self._post_json(
- self._url("/containe... | Fix ContainerApiMixin.copy with dict container arg | py |
diff --git a/salt/utils/gitfs.py b/salt/utils/gitfs.py
index <HASH>..<HASH> 100644
--- a/salt/utils/gitfs.py
+++ b/salt/utils/gitfs.py
@@ -404,7 +404,7 @@ class GitProvider(object):
# No need to pass an environment to self.root() here since per-saltenv
# configuration is a gitfs-only feature and check... | salt.utils.gitfs: Fix ref to self.root (#<I>) This regressed during a recent merge-forward. See here for more info: <URL> | py |
diff --git a/py/selenium/webdriver/firefox/webdriver.py b/py/selenium/webdriver/firefox/webdriver.py
index <HASH>..<HASH> 100644
--- a/py/selenium/webdriver/firefox/webdriver.py
+++ b/py/selenium/webdriver/firefox/webdriver.py
@@ -246,9 +246,8 @@ class WebDriver(RemoteWebDriver):
driver.install_addon... | [py] use context manager for encoding | py |
diff --git a/pgpy/pgp.py b/pgpy/pgp.py
index <HASH>..<HASH> 100644
--- a/pgpy/pgp.py
+++ b/pgpy/pgp.py
@@ -1326,7 +1326,7 @@ class PGPKey(PGPObject, Armorable):
for sk in itertools.chain([self], self.subkeys.values()):
sk._key.unprotect(passphrase)
del passphrase
- ... | PGPKey.unlock now yields self, so that with key.unlock() as ... now behaves as would be expected | py |
diff --git a/sh.py b/sh.py
index <HASH>..<HASH> 100644
--- a/sh.py
+++ b/sh.py
@@ -3536,6 +3536,7 @@ class SelfWrapper(ModuleType):
# Copy the Command class and add any baked call kwargs to it
command_cls = Command
cls_attrs = command_cls.__dict__.copy()
+ cls_attrs.pop("__dict__", Non... | Fix weird TypeError thrown by test_wraps test case Without this fix, this test case would raise: TypeError: descriptor '__dict__' for 'Command' objects doesn't apply to a 'Command' object | py |
diff --git a/salt/modules/ebuild.py b/salt/modules/ebuild.py
index <HASH>..<HASH> 100644
--- a/salt/modules/ebuild.py
+++ b/salt/modules/ebuild.py
@@ -69,6 +69,10 @@ def list_pkgs():
pkgs = _vartree().dbapi.cpv_all()
for cpv in pkgs:
ret[_cpv_to_name(cpv)] = _cpv_to_version(cpv)
+ __salt__['pk... | Add multiple version support to ebuild | py |
diff --git a/grimoire_elk/_version.py b/grimoire_elk/_version.py
index <HASH>..<HASH> 100644
--- a/grimoire_elk/_version.py
+++ b/grimoire_elk/_version.py
@@ -1,2 +1,2 @@
# Versions compliant with PEP 440 https://www.python.org/dev/peps/pep-0440
-__version__ = "0.31.1"
+__version__ = "0.31.2" | Update version number to <I> | py |
diff --git a/pygal/ghost.py b/pygal/ghost.py
index <HASH>..<HASH> 100644
--- a/pygal/ghost.py
+++ b/pygal/ghost.py
@@ -40,6 +40,8 @@ class Ghost(object):
def __init__(self, config=None, **kwargs):
"""Init config"""
+ name = self.__class__.__name__
+ self.cls = REAL_CHARTS[name]
if... | Fix tests by re using __value__ | py |
diff --git a/salt/states/mysql_query.py b/salt/states/mysql_query.py
index <HASH>..<HASH> 100644
--- a/salt/states/mysql_query.py
+++ b/salt/states/mysql_query.py
@@ -137,6 +137,7 @@ def run(name,
elif __opts__['test']:
ret['result'] = None
ret['comment'] = 'Query would execute, not storing resul... | Don't execute query if test mode is enabled. Fixes <I> | py |
diff --git a/flask_sqlalchemy_booster/crud_api_view.py b/flask_sqlalchemy_booster/crud_api_view.py
index <HASH>..<HASH> 100644
--- a/flask_sqlalchemy_booster/crud_api_view.py
+++ b/flask_sqlalchemy_booster/crud_api_view.py
@@ -21,11 +21,15 @@ def construct_get_view_function(
def get(_id):
_id = _id.strip(... | adding permitted objject getter in batch request also | py |
diff --git a/tests/integration/test_kuyruk.py b/tests/integration/test_kuyruk.py
index <HASH>..<HASH> 100644
--- a/tests/integration/test_kuyruk.py
+++ b/tests/integration/test_kuyruk.py
@@ -111,7 +111,9 @@ class KuyrukTestCase(unittest.TestCase):
with tasks.raise_exception.run_in_queue() as result:
... | fix tests for python 3 | py |
diff --git a/models/rasmachine/rasmachine.py b/models/rasmachine/rasmachine.py
index <HASH>..<HASH> 100644
--- a/models/rasmachine/rasmachine.py
+++ b/models/rasmachine/rasmachine.py
@@ -384,6 +384,13 @@ if __name__ == '__main__':
model.save(inc_model_file)
logger.info(time.strftime('%c'))
+ # Save a tim... | Add time stamped pickle as backup to Ras machine | py |
diff --git a/spyderlib/widgets/projectexplorer.py b/spyderlib/widgets/projectexplorer.py
index <HASH>..<HASH> 100644
--- a/spyderlib/widgets/projectexplorer.py
+++ b/spyderlib/widgets/projectexplorer.py
@@ -666,6 +666,7 @@ class ExplorerTreeWidget(OneColumnTree):
project.populate_tree(self, self.include, self.... | Project explorer/bugfix: after importing a project, PYTHONPATH was not updated in Spyder | py |
diff --git a/django_user_agents/middleware.py b/django_user_agents/middleware.py
index <HASH>..<HASH> 100644
--- a/django_user_agents/middleware.py
+++ b/django_user_agents/middleware.py
@@ -1,9 +1,10 @@
from django.utils.functional import SimpleLazyObject
+from django.utils.deprecation import MiddlewareMixin
from ... | Update middleware to be django<I>-compatible | py |
diff --git a/housekeeper/pipelines/mip/scout.py b/housekeeper/pipelines/mip/scout.py
index <HASH>..<HASH> 100644
--- a/housekeeper/pipelines/mip/scout.py
+++ b/housekeeper/pipelines/mip/scout.py
@@ -32,7 +32,8 @@ def prepare_scout(run_obj, madeline_exe):
# save the new scout config
config_path = Path(run_root... | make yaml dump prettier | py |
diff --git a/django_seed/management/commands/seed.py b/django_seed/management/commands/seed.py
index <HASH>..<HASH> 100644
--- a/django_seed/management/commands/seed.py
+++ b/django_seed/management/commands/seed.py
@@ -18,6 +18,13 @@ class Command(AppCommand):
help='number of each model to seed'),
... | Added the add_arguments method to the Command class. | py |
diff --git a/pyontutils/ttlfmt.py b/pyontutils/ttlfmt.py
index <HASH>..<HASH> 100755
--- a/pyontutils/ttlfmt.py
+++ b/pyontutils/ttlfmt.py
@@ -76,6 +76,7 @@ def parse(source, format_guess, outpath, graph=None):
if args['--format']:
format_guess = args['--format']
for format in (format_guess, *(f for ... | ttlfmt note about possibility of more efficient streaming parser to check for the file type | py |
diff --git a/blimpy/waterfall.py b/blimpy/waterfall.py
index <HASH>..<HASH> 100755
--- a/blimpy/waterfall.py
+++ b/blimpy/waterfall.py
@@ -32,6 +32,7 @@ from .plotting import *
from astropy.time import Time
from astropy import units as u
+from numba import jit
#------
# Logging set up
@@ -346,9 +347,13 @@ class... | accelerate block_dc with numba | py |
diff --git a/src/python/pants/backend/jvm/tasks/jar_create.py b/src/python/pants/backend/jvm/tasks/jar_create.py
index <HASH>..<HASH> 100644
--- a/src/python/pants/backend/jvm/tasks/jar_create.py
+++ b/src/python/pants/backend/jvm/tasks/jar_create.py
@@ -161,6 +161,10 @@ class JarCreate(JarTask):
target_classes ... | Add resource products on the target itself in jar_create This fixes a regression where scalac_plugins were not having their scalac-plugin.xml files written into the jar. Any other subclass of JvmCompile that uses JvmCompile.extra_products will also suffer from this regression. Testing Done: CI passes Reviewed at <U... | py |
diff --git a/cherrypy/process/plugins.py b/cherrypy/process/plugins.py
index <HASH>..<HASH> 100644
--- a/cherrypy/process/plugins.py
+++ b/cherrypy/process/plugins.py
@@ -460,7 +460,7 @@ class BackgroundTask(SetDaemonProperty, threading.Thread):
it won't delay stopping the whole process.
"""
- def __init... | Remove changes I would have expected to have been removed in the merge. | py |
diff --git a/galpy/orbit.py b/galpy/orbit.py
index <HASH>..<HASH> 100644
--- a/galpy/orbit.py
+++ b/galpy/orbit.py
@@ -1,6 +1,18 @@
from galpy.orbit_src import Orbit
#
+# Functions
+#
+# Boundary conditions
+zEqZeroBC= Orbit._zEqZeroBC
+vzEqZeroBC= Orbit._vzEqZeroBC
+REqZeroBC= Orbit._REqZeroBC
+vREqZeroBC= Orbit._... | put the default boundary conditions at the top level | py |
diff --git a/tests/scripts/thread-cert/node.py b/tests/scripts/thread-cert/node.py
index <HASH>..<HASH> 100755
--- a/tests/scripts/thread-cert/node.py
+++ b/tests/scripts/thread-cert/node.py
@@ -497,7 +497,7 @@ class NodeImpl:
return results
- def _expect_command_output(self, cmd: str):
+ def _expect... | [thread-cert] ignore CLI log lines (#<I>) This commit allows node.py to ignore log lines from node CLI output. Only if _expect_command_output is used. | py |
diff --git a/rollbar/__init__.py b/rollbar/__init__.py
index <HASH>..<HASH> 100644
--- a/rollbar/__init__.py
+++ b/rollbar/__init__.py
@@ -1605,13 +1605,12 @@ def _parse_response(path, access_token, params, resp, endpoint=None):
def _extract_user_ip(request):
- # some common things passed by load balancers... w... | Collect the user IP from X-Forwarded-For, then falls back to X-Real-Ip | py |
diff --git a/gwpy/tests/test_spectrogram.py b/gwpy/tests/test_spectrogram.py
index <HASH>..<HASH> 100644
--- a/gwpy/tests/test_spectrogram.py
+++ b/gwpy/tests/test_spectrogram.py
@@ -187,6 +187,7 @@ class TestSpectrogram(TestArray2D):
with pytest.raises(TypeError):
array.filter(lti, blah=1)
+ ... | tests: added missing test decorator skips missing h5py dependency | py |
diff --git a/salt/minion.py b/salt/minion.py
index <HASH>..<HASH> 100644
--- a/salt/minion.py
+++ b/salt/minion.py
@@ -502,6 +502,8 @@ class MinionBase(object):
conn = False
# shuffle the masters and then loop through them
opts['local_masters'] = copy.copy(opts['master'])
+ ... | Restore random_master functionality (#<I>) Was errantly removed in <I>b1d<I>f4c<I>f<I>d7af1e<I>cafbb2d1b8c | py |
diff --git a/synapse/lib/syntax.py b/synapse/lib/syntax.py
index <HASH>..<HASH> 100644
--- a/synapse/lib/syntax.py
+++ b/synapse/lib/syntax.py
@@ -353,13 +353,11 @@ def parse_ques(text,off=0,trim=True):
if text[off] != '=':
raise SyntaxError(text=text, off=off, mesg='expected equals for by... | acutally commit all the files for the delta :D | py |
diff --git a/gdspy/gdsiiformat.py b/gdspy/gdsiiformat.py
index <HASH>..<HASH> 100644
--- a/gdspy/gdsiiformat.py
+++ b/gdspy/gdsiiformat.py
@@ -13,6 +13,7 @@ from __future__ import print_function
from __future__ import absolute_import
import sys
+import warnings
if sys.version_info.major < 3:
from builtins i... | adding warning when encountering null bytes in gds file | py |
diff --git a/setup.py b/setup.py
index <HASH>..<HASH> 100644
--- a/setup.py
+++ b/setup.py
@@ -7,7 +7,7 @@ license: GNU-GPL2
from setuptools import setup
setup(name='arguments',
- version='67',
+ version='68',
description='Argument parser based on docopt',
url='https://github.com/erikdejonge... | Sunday <I> October <I> (week:<I> day:<I>), <I>:<I>:<I> | py |
diff --git a/dipper.py b/dipper.py
index <HASH>..<HASH> 100755
--- a/dipper.py
+++ b/dipper.py
@@ -31,6 +31,7 @@ from dipper.sources.WormBase import WormBase
from dipper.sources.OMIA import OMIA
# from dipper.sources.Monarch import Monarch
# from dipper.sources.GeneOntology import GeneOntology
+from dipper.sources.G... | add gwas option to dipper.py | py |
diff --git a/lib/py/src/transport/TTransport.py b/lib/py/src/transport/TTransport.py
index <HASH>..<HASH> 100644
--- a/lib/py/src/transport/TTransport.py
+++ b/lib/py/src/transport/TTransport.py
@@ -234,7 +234,7 @@ class TFramedTransport(TTransportBase):
def __init__(self, trans,):
self.__trans = trans
- s... | python: Make TFramedTransport use a cStringIO for reading Tested by running a client against a framed-transport server. git-svn-id: <URL> | py |
diff --git a/src/cdumay_error/__init__.py b/src/cdumay_error/__init__.py
index <HASH>..<HASH> 100644
--- a/src/cdumay_error/__init__.py
+++ b/src/cdumay_error/__init__.py
@@ -28,6 +28,13 @@ class Error(Exception):
)
])
+ def __repr__(self):
+ return "%s<code=%s, message=%s>" % ... | devel: added __repr__ | py |
diff --git a/teneto/networkmeasures/temporal_degree_centrality.py b/teneto/networkmeasures/temporal_degree_centrality.py
index <HASH>..<HASH> 100755
--- a/teneto/networkmeasures/temporal_degree_centrality.py
+++ b/teneto/networkmeasures/temporal_degree_centrality.py
@@ -48,7 +48,7 @@ def temporal_degree_centrality(net_... | renamed network_info to netinfo for consistency | py |
diff --git a/elasticapm/instrumentation/packages/elasticsearch.py b/elasticapm/instrumentation/packages/elasticsearch.py
index <HASH>..<HASH> 100644
--- a/elasticapm/instrumentation/packages/elasticsearch.py
+++ b/elasticapm/instrumentation/packages/elasticsearch.py
@@ -35,6 +35,7 @@ import logging
import elasticapm... | Elasticsearch Instrumentation: Safer json serialization (#<I>) * Handle datetime objects in elasticsearch queries * Use compat.text_type instead of str for python version compatibility | py |
diff --git a/librosa/segment.py b/librosa/segment.py
index <HASH>..<HASH> 100644
--- a/librosa/segment.py
+++ b/librosa/segment.py
@@ -167,7 +167,6 @@ def structure_feature(rec, pad=True, inverse=False):
return np.ascontiguousarray(struct.T).T
-@cache
def agglomerative(data, k, clusterer=None):
"""Bottom... | cannot cache agglomerative either | py |
diff --git a/tests/test_commands.py b/tests/test_commands.py
index <HASH>..<HASH> 100644
--- a/tests/test_commands.py
+++ b/tests/test_commands.py
@@ -1633,7 +1633,7 @@ class TestRedisCommands(object):
def test_xadd(self, r):
stream = 'stream'
message_id = r.xadd(stream, {'foo': 'bar'})
- ... | python 2 likes binary regex hints specified as 'br' rather than 'rb' | py |
diff --git a/bokeh/server/utils/plugins.py b/bokeh/server/utils/plugins.py
index <HASH>..<HASH> 100644
--- a/bokeh/server/utils/plugins.py
+++ b/bokeh/server/utils/plugins.py
@@ -52,5 +52,6 @@ def object_page(prefix):
hide_navbar=True,
splitjs=boke... | patching function name in decorator name | py |
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