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git-diff-to-commit-gemma-3-270m

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diff --git a/pyGenClean/LaTeX/auto_report.py b/pyGenClean/LaTeX/auto_report.py index <HASH>..<HASH> 100644 --- a/pyGenClean/LaTeX/auto_report.py +++ b/pyGenClean/LaTeX/auto_report.py @@ -119,6 +119,17 @@ def create_report(outdirname, report_filename, **kwargs): volume="81", number="3", pages=...
Added the bafRegress reference
py
diff --git a/src/aspectlib/test.py b/src/aspectlib/test.py index <HASH>..<HASH> 100644 --- a/src/aspectlib/test.py +++ b/src/aspectlib/test.py @@ -87,6 +87,8 @@ class LogCapture(object): ... logger.error("Message from error: %s", 'somearg') >>> logs.calls [('Message from info: %s', ('some...
Add example with ``messages``.
py
diff --git a/compliance_checker/ioos.py b/compliance_checker/ioos.py index <HASH>..<HASH> 100644 --- a/compliance_checker/ioos.py +++ b/compliance_checker/ioos.py @@ -451,8 +451,6 @@ class IOOS1_2Check(IOOSNCCheck): self.rec_atts = [ ('contributor_email', base.EmailValidator()), 'cont...
Ioos 1 2 redundant msgs (#<I>) * Remove redundant messaging for contributor_role and contributor_role_vocabulary By removing contributor_role and contributor_role_vocabulary from the recommended attributes, the explcitly implemented checks put out the correct number of messages. * Remove redundant messaging ...
py
diff --git a/telethon_generator/tl_generator.py b/telethon_generator/tl_generator.py index <HASH>..<HASH> 100644 --- a/telethon_generator/tl_generator.py +++ b/telethon_generator/tl_generator.py @@ -314,11 +314,11 @@ class TLGenerator: for ra in repeated_args.values(): if len(ra) > 1: - ...
Fix assert condition on generated code with flags involved The specific case was SendMessageRequest with InputMessageEntityMentionName, failing with bot/bot_info
py
diff --git a/cobra/test/flux_analysis.py b/cobra/test/flux_analysis.py index <HASH>..<HASH> 100644 --- a/cobra/test/flux_analysis.py +++ b/cobra/test/flux_analysis.py @@ -64,9 +64,18 @@ class TestCobraFluxAnalysis(TestCase): modify.revert_to_reversible(model3) self.assertAlmostEqual(model1.solution.f,...
add unit test to catch #<I> Checks that convert_to_irreversible works with negative upper bounds.
py
diff --git a/indra/literature/crossref_client.py b/indra/literature/crossref_client.py index <HASH>..<HASH> 100644 --- a/indra/literature/crossref_client.py +++ b/indra/literature/crossref_client.py @@ -138,6 +138,9 @@ def doi_query(pmid, search_limit=10): xref_doi_url = result['doi'] # Strip the URL ...
Handle case where DOI doesn't match pattern
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -29,6 +29,7 @@ setup( "django-appconf>=1.0.1", "django-test-plus>=1.0.11", "mock>=1.3.0", + "django-user-accounts>=1.3.1", "pinax-theme-bootstrap>=7.2.0", ], install_require...
Adding django-user-accounts for testing.
py
diff --git a/delphi/utils.py b/delphi/utils.py index <HASH>..<HASH> 100644 --- a/delphi/utils.py +++ b/delphi/utils.py @@ -131,7 +131,7 @@ def foldl(f: Callable[[T, U], T], x: T, xs: Iterable[U]) -> T: of an iterable. .. math:: - foldl(f, x_0, [x_1, x_2, x_3]) = f(f(f(f(x_0), x_1), x_2), x_3) + ...
Fixed documentation for foldl and foldl1 functions
py
diff --git a/minio/__version__.py b/minio/__version__.py index <HASH>..<HASH> 100644 --- a/minio/__version__.py +++ b/minio/__version__.py @@ -17,7 +17,7 @@ # (major, minor, micro, alpha/beta/rc/final, #) # (1, 1, 2, 'alpha', 0) => "1.1.2.dev" # (1, 2, 0, 'beta', 2) => "1.2b2" -version_info = (0, 2, 7, 'final', 0) +...
Bump to new version <I>
py
diff --git a/tests/test_jujupy.py b/tests/test_jujupy.py index <HASH>..<HASH> 100644 --- a/tests/test_jujupy.py +++ b/tests/test_jujupy.py @@ -291,7 +291,7 @@ class FakeBackend: if backing_state is None: backing_state = self._backing_state return self.__class__(backing_state, set(self._fe...
Fix clone overrides.
py
diff --git a/version.py b/version.py index <HASH>..<HASH> 100755 --- a/version.py +++ b/version.py @@ -1,2 +1,2 @@ #/usr/bin/env python -VERSION = '1.2.9-s841' +VERSION = '1.2.9-s852'
Ready for release New release s<I>
py
diff --git a/Lib/glyphsLib/classes.py b/Lib/glyphsLib/classes.py index <HASH>..<HASH> 100755 --- a/Lib/glyphsLib/classes.py +++ b/Lib/glyphsLib/classes.py @@ -1127,7 +1127,7 @@ class GSComponent(GSBase): "alignment": int, "anchor": str, "locked": bool, - "name": str, + "name": u...
classes: GSComponent.name and GSAnchor.name as unicode
py
diff --git a/PyFileMaker/FMServer.py b/PyFileMaker/FMServer.py index <HASH>..<HASH> 100644 --- a/PyFileMaker/FMServer.py +++ b/PyFileMaker/FMServer.py @@ -678,6 +678,9 @@ class FMServer: request = '&'.join(request) url = "%s?%s" % (self._buildUrl(), request) + if self._debug: + print '[PyFileMaker DEBUG] '...
Add missing functionality to debug query when debug mode is True
py
diff --git a/api/models.py b/api/models.py index <HASH>..<HASH> 100644 --- a/api/models.py +++ b/api/models.py @@ -549,10 +549,7 @@ class App(UuidAuditedModel): release = self.release_set.order_by('-created')[0] # prepare ssh command version = release.version - docker_args = ' '.join( ...
change run to use build.image instead of a slug mount
py
diff --git a/agentarchives/archivesspace/client.py b/agentarchives/archivesspace/client.py index <HASH>..<HASH> 100644 --- a/agentarchives/archivesspace/client.py +++ b/agentarchives/archivesspace/client.py @@ -417,6 +417,8 @@ class ArchivesSpaceClient(object): "type": "accessrestrict", ...
AS: publish file versions if there are no restrictions
py
diff --git a/angr/analyses/binary_optimizer.py b/angr/analyses/binary_optimizer.py index <HASH>..<HASH> 100644 --- a/angr/analyses/binary_optimizer.py +++ b/angr/analyses/binary_optimizer.py @@ -160,6 +160,22 @@ class BinaryOptimizer(Analysis): func_kb = KnowledgeBase(self.project, self.project.loader.main_o...
BinaryOptimizer: add some explanations on why we need to specify iropt_level as 0.
py
diff --git a/psiturk/models.py b/psiturk/models.py index <HASH>..<HASH> 100644 --- a/psiturk/models.py +++ b/psiturk/models.py @@ -34,7 +34,7 @@ class Participant(Base): endhit = Column(DateTime) bonus = Column(Float, default = 0) status = Column(Integer, default = 1) - datastring = Column(UnicodeText...
Fix bug encoding non-unicode strings This lets it just save the ascii strings, which seems to work.
py
diff --git a/anyconfig/cli.py b/anyconfig/cli.py index <HASH>..<HASH> 100644 --- a/anyconfig/cli.py +++ b/anyconfig/cli.py @@ -55,7 +55,10 @@ Examples: %prog '/etc/foo.d/*.json' -M noreplace # Get/set part of input config %prog '/etc/foo.d/*.json' --get a.b.c - %prog '/etc/foo.d/*.json' --set a.b.c=1""" + %p...
enhancement: show validation related examples in usage
py
diff --git a/blockstack_cli_0.14.1/blockstack_client/storage.py b/blockstack_cli_0.14.1/blockstack_client/storage.py index <HASH>..<HASH> 100644 --- a/blockstack_cli_0.14.1/blockstack_client/storage.py +++ b/blockstack_cli_0.14.1/blockstack_client/storage.py @@ -192,10 +192,12 @@ def parse_mutable_data( mutable_data_js...
verify JWT is a dict or a list
py
diff --git a/pyasn1/type/univ.py b/pyasn1/type/univ.py index <HASH>..<HASH> 100644 --- a/pyasn1/type/univ.py +++ b/pyasn1/type/univ.py @@ -325,9 +325,10 @@ class OctetString(base.AbstractSimpleAsn1Item): if sys.version_info[0] <= 2: def __str__(self): return str(self._value) - def __unicode__(sel...
ignore possible failures on bytes-to-string convertion at OctetString
py
diff --git a/eve_elastic/elastic.py b/eve_elastic/elastic.py index <HASH>..<HASH> 100644 --- a/eve_elastic/elastic.py +++ b/eve_elastic/elastic.py @@ -107,7 +107,10 @@ class Elastic(DataLayer): mapping[datasource[0]] = {'properties': properties} self.es.put_mapping(self.index, datasource[0], m...
Add sub_resource_lookup to find method.
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -8,7 +8,7 @@ except ImportError: setup( name='relay.runner', - version='0.1.8', + version='0.1.9.dev0', description=( 'A smart thermostat. Given a metric, or some timeseries that should' '...
Back to development: <I>
py
diff --git a/niworkflows/utils/misc.py b/niworkflows/utils/misc.py index <HASH>..<HASH> 100644 --- a/niworkflows/utils/misc.py +++ b/niworkflows/utils/misc.py @@ -263,5 +263,28 @@ def pass_dummy_scans(algo_dummy_scans, dummy_scans=None): return dummy_scans +def check_valid_fs_license(): + """Quickly runs mr...
ENH: Add utility function to quickly check FS license
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -37,7 +37,7 @@ setup( # Details url="https://github.com/kayak/pypika", - description="A query builder API for Python", + description="A SQL query builder API for Python", long_description=readme(), ...
Added "SQL" to description To avoid confusion with, and inferred relation to, pika, the query builder for AMPQ.
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -21,11 +21,12 @@ if any([v < (2, 6), (3,) < v < (3, 3)]): import os from os.path import abspath import sys +import numpy as np from setuptools import setup, Extension, find_packages # Sources & libraries -inc_dirs = [...
setup in clude numpy bette
py
diff --git a/Mixtape/lumping/pcca.py b/Mixtape/lumping/pcca.py index <HASH>..<HASH> 100644 --- a/Mixtape/lumping/pcca.py +++ b/Mixtape/lumping/pcca.py @@ -44,6 +44,7 @@ class PCCA(mixtape.markovstatemodel.MarkovStateModel): return self def _do_lumping(self): + """Does the actual lumping part, cha...
Fixed from_msm and docstring
py
diff --git a/pipeline/finders.py b/pipeline/finders.py index <HASH>..<HASH> 100644 --- a/pipeline/finders.py +++ b/pipeline/finders.py @@ -45,13 +45,10 @@ class CachedFileFinder(BaseFinder): """ try: start, _, extn = path.rsplit('.', 2) - path = '.'.join((start, extn)) - ...
Narrow the scope of try: except clause
py
diff --git a/ircbot.py b/ircbot.py index <HASH>..<HASH> 100644 --- a/ircbot.py +++ b/ircbot.py @@ -58,6 +58,9 @@ class SingleServerIRCBot(SimpleIRCClient): reconnection_interval -- How long the bot should wait before trying to reconnect. + + dcc_connection...
Added dcc_connections attribute to doc string again.
py
diff --git a/delphi/utils/indra.py b/delphi/utils/indra.py index <HASH>..<HASH> 100644 --- a/delphi/utils/indra.py +++ b/delphi/utils/indra.py @@ -42,15 +42,19 @@ def influence_stmt_from_dict(d: Dict) -> Influence: return st +def get_statements_from_json_dict(_dict: Dict) -> List[Influence]: + return [ + ...
Refactored delphi.utils.indra.get_statements_from_json_file into two functions, one dealing with I/O, and the other not.
py
diff --git a/hwt/hdl/types/bitsVal.py b/hwt/hdl/types/bitsVal.py index <HASH>..<HASH> 100644 --- a/hwt/hdl/types/bitsVal.py +++ b/hwt/hdl/types/bitsVal.py @@ -408,13 +408,17 @@ class BitsVal(Bits3val, EventCapableVal, HValue): return b else: a = toHVal(a) - b = toHVal(b...
early report of type mismatch in Bits _ternary
py
diff --git a/doc/conf.py b/doc/conf.py index <HASH>..<HASH> 100644 --- a/doc/conf.py +++ b/doc/conf.py @@ -12,6 +12,7 @@ # serve to show the default. import sys, os +import alabaster # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the ...
Added path for alabaster theme in doc config.
py
diff --git a/pymc3/tests/test_stats.py b/pymc3/tests/test_stats.py index <HASH>..<HASH> 100644 --- a/pymc3/tests/test_stats.py +++ b/pymc3/tests/test_stats.py @@ -61,6 +61,27 @@ def test_dic_warns_on_transformed_rv(): assert(len(w) == 1) +def test_waic(): + """Test widely available information criterion...
add test for waic based on test for dic
py
diff --git a/peewee.py b/peewee.py index <HASH>..<HASH> 100644 --- a/peewee.py +++ b/peewee.py @@ -649,22 +649,25 @@ class QueryResultWrapper(object): pass self.__idx = idx + def iterate(self): + row = self.cursor.fetchone() + if row: + return self.constru...
Moving parts of the next() logic into a simple iterate function
py
diff --git a/anonymoususage/anonymoususage.py b/anonymoususage/anonymoususage.py index <HASH>..<HASH> 100644 --- a/anonymoususage/anonymoususage.py +++ b/anonymoususage/anonymoususage.py @@ -261,7 +261,7 @@ class AnonymousUsageTracker(object): cfg.readfp(_f) if cfg.has_section('General'): ...
read data base filepath from kwargs first, then search the config file
py
diff --git a/geomdl/tessellate.py b/geomdl/tessellate.py index <HASH>..<HASH> 100644 --- a/geomdl/tessellate.py +++ b/geomdl/tessellate.py @@ -31,4 +31,4 @@ class TriangularTessellate(Abstract.Tessellate): super(TriangularTessellate, self).tessellate(points, size_u, size_v, **kwargs) # Apply default...
Should pass kwargs too
py
diff --git a/fancy_getopt.py b/fancy_getopt.py index <HASH>..<HASH> 100644 --- a/fancy_getopt.py +++ b/fancy_getopt.py @@ -47,16 +47,24 @@ def fancy_getopt (options, object, args): attr_name = {} takes_arg = {} - for (long, short, help) in options: + for option in options: + try: + (...
Better detection of bad entries in option table. Better error messages for bad entries in option table.
py
diff --git a/features/txt.py b/features/txt.py index <HASH>..<HASH> 100644 --- a/features/txt.py +++ b/features/txt.py @@ -31,3 +31,17 @@ class GeneGotermMap(Resource): parts =[part.strip() for part in line.split('\t')] self.parser[parts[0]].add((parts[1], parts[2])) fhndl.close() + ...
added gene id iterator feature
py
diff --git a/dataswim/data/text.py b/dataswim/data/text.py index <HASH>..<HASH> 100644 --- a/dataswim/data/text.py +++ b/dataswim/data/text.py @@ -8,6 +8,23 @@ class Text(): Class to process text """ + def flat_(self, col, nums=True): + """ + Returns a flat representation of a column's valu...
Add the flat_ method to represent a column
py
diff --git a/bin/pip_constraint_helpers.py b/bin/pip_constraint_helpers.py index <HASH>..<HASH> 100644 --- a/bin/pip_constraint_helpers.py +++ b/bin/pip_constraint_helpers.py @@ -53,7 +53,7 @@ def get_constraint_file_path(req_dir, toxenv, python_tag): """ sys_platform = sys.platform # pylint: disable=pos...
Lowercase the machine arch in constraints files
py
diff --git a/fedmsg/text/tagger.py b/fedmsg/text/tagger.py index <HASH>..<HASH> 100644 --- a/fedmsg/text/tagger.py +++ b/fedmsg/text/tagger.py @@ -22,7 +22,7 @@ from fedmsg.text.fasshim import gravatar_url class TaggerProcessor(BaseProcessor): - __name__ = "Tagger" + __name__ = "fedoratagger" __descript...
Rename 'Tagger' text processor to 'fedoratagger' to be consistent with the topic
py
diff --git a/src/satosa/wsgi.py b/src/satosa/wsgi.py index <HASH>..<HASH> 100644 --- a/src/satosa/wsgi.py +++ b/src/satosa/wsgi.py @@ -7,8 +7,8 @@ import sys from werkzeug.debug import DebuggedApplication from werkzeug.serving import run_simple -from .proxy_server import ToBytesMiddleware, WsgiApplication -from .sa...
Don't use relative imports in main module. It will result in error: 'SystemError: Parent module '' not loaded, cannot perform relative import'.
py
diff --git a/pyemma/coordinates/data/_base/iterable.py b/pyemma/coordinates/data/_base/iterable.py index <HASH>..<HASH> 100644 --- a/pyemma/coordinates/data/_base/iterable.py +++ b/pyemma/coordinates/data/_base/iterable.py @@ -60,6 +60,8 @@ class Iterable(six.with_metaclass(ABCMeta, ProgressReporter, Loggable)): @...
[Iterable] if in_memory has not yet been set, return False.
py
diff --git a/ignite/handlers/checkpoint.py b/ignite/handlers/checkpoint.py index <HASH>..<HASH> 100644 --- a/ignite/handlers/checkpoint.py +++ b/ignite/handlers/checkpoint.py @@ -220,9 +220,12 @@ class Checkpoint(Serializable): return engine.state.metrics['accuracy'] to_save = {'model': ...
Update checkpoint.py (#<I>)
py
diff --git a/AndroidViewClient/src/com/dtmilano/android/viewclient.py b/AndroidViewClient/src/com/dtmilano/android/viewclient.py index <HASH>..<HASH> 100644 --- a/AndroidViewClient/src/com/dtmilano/android/viewclient.py +++ b/AndroidViewClient/src/com/dtmilano/android/viewclient.py @@ -1016,6 +1016,7 @@ class ViewClien...
Fixed '\r' at end of serialno in Windows XP - Reported and fix suggested by Diogo Bilkes
py
diff --git a/address/models.py b/address/models.py index <HASH>..<HASH> 100644 --- a/address/models.py +++ b/address/models.py @@ -210,4 +210,7 @@ class AddressField(models.ForeignKey): return super(models.ForeignKey, self).formfield(**defaults) def value_from_object(self, obj): - return unicode(...
Making sure we don't get any 'none' values turning up.
py
diff --git a/test_pal.py b/test_pal.py index <HASH>..<HASH> 100644 --- a/test_pal.py +++ b/test_pal.py @@ -1623,14 +1623,17 @@ class TestPAL(unittest.TestCase): np.testing.assert_array_almost_equal(amprms, expected, decimal=12) def test_mapqkz(self): + """ + Run inputs through mapqk with z...
Update mapqkz test to match the new version in PAL
py
diff --git a/avatar/models.py b/avatar/models.py index <HASH>..<HASH> 100644 --- a/avatar/models.py +++ b/avatar/models.py @@ -31,7 +31,8 @@ from avatar.settings import (AVATAR_STORAGE_DIR, AVATAR_RESIZE_METHOD, AVATAR_MAX_AVATARS_PER_USER, AVATAR_THUMB_FORMAT, ...
Add a get_absolute_url() method to help implementors (it needs to exists for projects to overwrite it) Conflicts: avatar/models.py
py
diff --git a/buildutils/detect.py b/buildutils/detect.py index <HASH>..<HASH> 100644 --- a/buildutils/detect.py +++ b/buildutils/detect.py @@ -120,6 +120,8 @@ def detect_version(basedir, compiler=None, **compiler_attrs): cc = ccompiler.new_compiler(compiler=compiler) cc.output_dir = basedir i...
Fix problem with detect libcapnp function
py
diff --git a/libaio/__init__.py b/libaio/__init__.py index <HASH>..<HASH> 100644 --- a/libaio/__init__.py +++ b/libaio/__init__.py @@ -323,6 +323,19 @@ class AIOContext(object): raise return self._eventToPython(event) + def cancelAll(self): + """ + Cancel all submitted IO blocks...
libaio: Add cancelAll method. Useful to properly finalise all submitted transfers without having to keep track outside of this class (which already has to keep track of submitted transfers).
py
diff --git a/hdf5storage/Marshallers.py b/hdf5storage/Marshallers.py index <HASH>..<HASH> 100644 --- a/hdf5storage/Marshallers.py +++ b/hdf5storage/Marshallers.py @@ -709,7 +709,7 @@ class NumpyScalarArrayMarshaller(TypeMarshaller): try: dt = h5py.special_dtype(vlen=np.dtype('S1'))...
Fixed bug in MATLAB_fields Attribute generation for NumpyScalarArrayMarshaller.
py
diff --git a/stanza/models/tokenize/utils.py b/stanza/models/tokenize/utils.py index <HASH>..<HASH> 100644 --- a/stanza/models/tokenize/utils.py +++ b/stanza/models/tokenize/utils.py @@ -124,7 +124,7 @@ def output_predictions(output_file, trainer, data_generator, vocab, mwt_dict, ma oov_count = 0 doc = [] -...
Account for orig_text is None
py
diff --git a/suds/__init__.py b/suds/__init__.py index <HASH>..<HASH> 100644 --- a/suds/__init__.py +++ b/suds/__init__.py @@ -27,7 +27,7 @@ import sys # __version__ = '0.4' -__build__="(beta) R685-20100513" +__build__="(beta) R686-20100817" # # Exceptions
bump to revision: R<I>-<I>.
py
diff --git a/vex/make.py b/vex/make.py index <HASH>..<HASH> 100644 --- a/vex/make.py +++ b/vex/make.py @@ -1,5 +1,6 @@ import os import sys +import distutils.spawn from vex.run import run from vex import exceptions @@ -45,6 +46,10 @@ def handle_make(environ, options, make_path): ve = 'virtualenv' ar...
use distutils.spawn.find_executable to resolve --python arg on win vex isn't even processing the argument, so virtualenv itself is failing here. This is a terrible workaround for the failures of Windows and virtualenv to resolve arguments for convenience of Windows users. Windows users should probably be used to speci...
py
diff --git a/hydra_base/lib/objects.py b/hydra_base/lib/objects.py index <HASH>..<HASH> 100644 --- a/hydra_base/lib/objects.py +++ b/hydra_base/lib/objects.py @@ -19,11 +19,12 @@ import json import six +import enum from datetime import datetime from ..exceptions import HydraError -from .HydraTypes.Registry im...
Add support for enums in the JSONObject by checking if a value is an instance of an enum and setting its value if so
py
diff --git a/gyp/pylib/gyp/generator/make.py b/gyp/pylib/gyp/generator/make.py index <HASH>..<HASH> 100644 --- a/gyp/pylib/gyp/generator/make.py +++ b/gyp/pylib/gyp/generator/make.py @@ -1888,11 +1888,13 @@ $(obj).$(TOOLSET)/$(TARGET)/%%.o: $(obj)/%%%s FORCE_DO_CMD """Returns the location of the final output for a...
gyp: always install into $PRODUCT_DIR
py
diff --git a/troposphere/acmpca.py b/troposphere/acmpca.py index <HASH>..<HASH> 100644 --- a/troposphere/acmpca.py +++ b/troposphere/acmpca.py @@ -55,7 +55,7 @@ class Validity(AWSProperty): } -class Certificate(AWSProperty): +class Certificate(AWSObject): resource_type = "AWS::ACMPCA::Certificate" ...
Fixes to acmpca (#<I>) * Update acmpca.py * Update Certificate to AWSObject
py
diff --git a/lib/acstools/PixCteCorr.py b/lib/acstools/PixCteCorr.py index <HASH>..<HASH> 100644 --- a/lib/acstools/PixCteCorr.py +++ b/lib/acstools/PixCteCorr.py @@ -353,7 +353,10 @@ def YCte(inFits, outFits='', noise=1, intermediateFiles=False): # Update header pf_out['PRIMARY'].header.update('PCTECORR', 'C...
Updated PixCteCorr.YCte so that PCTERNCL header keyword is set to 0 when read noise smoothing is turned off. git-svn-id: <URL>
py
diff --git a/mongo_connector/connector.py b/mongo_connector/connector.py index <HASH>..<HASH> 100755 --- a/mongo_connector/connector.py +++ b/mongo_connector/connector.py @@ -352,7 +352,7 @@ class Connector(threading.Thread): cause = "The system only uses replica sets!" ...
fix issue : self.doc_managers used as a function
py
diff --git a/pyfc4/models.py b/pyfc4/models.py index <HASH>..<HASH> 100644 --- a/pyfc4/models.py +++ b/pyfc4/models.py @@ -46,7 +46,7 @@ class Repository(object): username, password, context=None, - default_response_format='application/ld+json' + default_response_format='application/rdf+xml' ): ...
defaulting to rdf+xml, breaks tests
py
diff --git a/pymrio/tools/ioparser.py b/pymrio/tools/ioparser.py index <HASH>..<HASH> 100644 --- a/pymrio/tools/ioparser.py +++ b/pymrio/tools/ioparser.py @@ -676,6 +676,13 @@ def parse_exiobase3(path): """ io = load_all(path) + # need to rename the final demand satellite, + # wrong name in the standa...
Parsing exio3 now renames F_hh to FY This was necessary since in the exio3 distribution the satellite account for final demand are named F_hh. In pymrio FY is used as the standard name.
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100755 --- a/setup.py +++ b/setup.py @@ -4,7 +4,7 @@ from setuptools import setup, find_packages setupopts = dict( name="automate", - version='0.10.0.dev0', + version='0.10.0', packages=find_packages('src'), include_package_data=True, pa...
Preparing release <I>
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diff --git a/safe/impact_functions/loader.py b/safe/impact_functions/loader.py index <HASH>..<HASH> 100644 --- a/safe/impact_functions/loader.py +++ b/safe/impact_functions/loader.py @@ -67,6 +67,8 @@ from safe.impact_functions.volcanic.volcano_point_population\ # Volcanic Ash from safe.impact_functions.ash.ash_raste...
Add ash raster IF to loader.
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diff --git a/revproxy/utils.py b/revproxy/utils.py index <HASH>..<HASH> 100644 --- a/revproxy/utils.py +++ b/revproxy/utils.py @@ -43,15 +43,24 @@ IGNORE_HEADERS = ( 'HTTP_ACCEPT_ENCODING', # We want content to be uncompressed so # we remove the Accept-Encoding from ...
Adding content-type to request headers
py
diff --git a/torchvision/utils.py b/torchvision/utils.py index <HASH>..<HASH> 100644 --- a/torchvision/utils.py +++ b/torchvision/utils.py @@ -39,7 +39,8 @@ def make_grid(tensor, nrow=8, padding=2, if tensor.dim() == 3: # single image if tensor.size(0) == 1: # if single-channel, convert to 3-channel ...
Normalize single images to make_grid (#<I>)
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diff --git a/rstcheck.py b/rstcheck.py index <HASH>..<HASH> 100755 --- a/rstcheck.py +++ b/rstcheck.py @@ -156,24 +156,30 @@ class IgnoredDirective(docutils.parsers.rst.Directive): return [] # Ignore Sphinx directives. -for _directive in [ - 'attribute', - 'centered', - 'deprecated', - ...
Add new directive from sphinx.ext.autosummary and role :class:
py
diff --git a/quilt/db.py b/quilt/db.py index <HASH>..<HASH> 100644 --- a/quilt/db.py +++ b/quilt/db.py @@ -37,7 +37,6 @@ class InvalidPatchError(QuiltError): class PatchSeries(object): def __init__(self, dirname, filename): - self._patches = [] self.dirname = dirname self.filename = fil...
Reset patches if they are re-read from the series file
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diff --git a/wpull/version.py b/wpull/version.py index <HASH>..<HASH> 100644 --- a/wpull/version.py +++ b/wpull/version.py @@ -6,4 +6,4 @@ A string conforming to `Semantic Versioning Guidelines <http://semver.org/>`_ ''' -__version__ = '0.30a1' +__version__ = '0.31a1'
Bumps version to <I>a1.
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diff --git a/docs/conf.py b/docs/conf.py index <HASH>..<HASH> 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -62,12 +62,12 @@ link_files = { url='{GH}/jaraco/setuptools_svn/issues/{setuptools_svn}', ), dict( - pattern=r'pypa/distutils#(?P<distutils>\d+)', - ...
Extend matching of issue/commit links to all PyPA repositories Currently the link for the pypa/get-pip issue was rendering wrongly. This change extends the matching for issues and commits (currently only handling `distutils`) to any PyPA repository.
py
diff --git a/master/buildbot/process/botmaster.py b/master/buildbot/process/botmaster.py index <HASH>..<HASH> 100644 --- a/master/buildbot/process/botmaster.py +++ b/master/buildbot/process/botmaster.py @@ -387,7 +387,7 @@ class BuildRequestDistributor(service.Service): # start the activity loop, if we are...
only catch Exception, and specifically not GeneratorExit, inside inlineCallbacks Refs #<I>.
py
diff --git a/pyghmi/ipmi/oem/lenovo/imm.py b/pyghmi/ipmi/oem/lenovo/imm.py index <HASH>..<HASH> 100644 --- a/pyghmi/ipmi/oem/lenovo/imm.py +++ b/pyghmi/ipmi/oem/lenovo/imm.py @@ -1476,7 +1476,7 @@ class XCCClient(IMMClient): self._refresh_token() rsp = self.wc.grab_json_response('/api/providers/fwupda...
Report <I> as temporary error <I> is a transient condition that requires the update procedure to be done again. Change-Id: Icf<I>dda2ef<I>ac8fcd<I>c3e<I>c<I>dfdeee
py
diff --git a/safe/gui/tools/test/test_wizard_dialog.py b/safe/gui/tools/test/test_wizard_dialog.py index <HASH>..<HASH> 100644 --- a/safe/gui/tools/test/test_wizard_dialog.py +++ b/safe/gui/tools/test/test_wizard_dialog.py @@ -1396,9 +1396,9 @@ class WizardDialogTest(unittest.TestCase): 'Please update expe...
Fixing broken tests. Conflicts: safe/test/data/other/issue<I>.qml
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -29,7 +29,7 @@ else: setup(name="polysquare-setuptools-lint", - version="0.0.48", + version="0.0.46", description="""Provides a 'polysquarelint' command for setuptools""", long_description_markdown...
setup: Lock flake8-todo to <I> It looks like this was causing the version conflict
py
diff --git a/bhmm/hmm/generic_sampled_hmm.py b/bhmm/hmm/generic_sampled_hmm.py index <HASH>..<HASH> 100644 --- a/bhmm/hmm/generic_sampled_hmm.py +++ b/bhmm/hmm/generic_sampled_hmm.py @@ -92,7 +92,7 @@ class SampledHMM(HMM): @property def stationary_distribution_samples(self): r""" Samples of the stat...
changes self._stationary to self.is_stationary
py
diff --git a/analytical/templatetags/google_analytics.py b/analytical/templatetags/google_analytics.py index <HASH>..<HASH> 100644 --- a/analytical/templatetags/google_analytics.py +++ b/analytical/templatetags/google_analytics.py @@ -36,6 +36,15 @@ CUSTOM_VAR_CODE = "_gaq.push(['_setCustomVar', %(index)s, '%(name)s', ...
added python <I> compatibility to google_analytics
py
diff --git a/lavalink/AudioTrack.py b/lavalink/AudioTrack.py index <HASH>..<HASH> 100644 --- a/lavalink/AudioTrack.py +++ b/lavalink/AudioTrack.py @@ -9,8 +9,8 @@ class TrackNotBuilt(Exception): class AudioTrack: - __slots__ = ("track", "identifier", "can_seek", "author", "duration", "stream", "title", "uri"...
As said before, () is eww P.S. -> Devoxin is a bulli
py
diff --git a/beprof/curve.py b/beprof/curve.py index <HASH>..<HASH> 100644 --- a/beprof/curve.py +++ b/beprof/curve.py @@ -105,7 +105,7 @@ class Curve(np.ndarray): print('Error2') return self y = np.interp(domain, self.x, self.y) - obj = Curve(np.stack((domain, y), axis=1), **s...
Minor changes major effect Didn't see it before, now it works ok.
py
diff --git a/autofit/tools/edenise/structure/item.py b/autofit/tools/edenise/structure/item.py index <HASH>..<HASH> 100644 --- a/autofit/tools/edenise/structure/item.py +++ b/autofit/tools/edenise/structure/item.py @@ -80,12 +80,6 @@ class Item(ABC): """ return self.parent.path - # def __str__(se...
fixed test by reimplementing str and repr
py
diff --git a/glassdoor/gd.py b/glassdoor/gd.py index <HASH>..<HASH> 100644 --- a/glassdoor/gd.py +++ b/glassdoor/gd.py @@ -33,7 +33,7 @@ def parse_satisfaction(soup): if _soups: _soup = _soups[0] _data['reviews'] = tryelse(lambda: intify(soup.findAll('span', {'itemprop': 'reviewCount'})[0].text),...
fixed bug, extra comma
py
diff --git a/docs/conf.py b/docs/conf.py index <HASH>..<HASH> 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -57,7 +57,7 @@ master_doc = 'index' # General information about the project. project = 'empymod' -copyright = '2016, Dieter Werthmüller' +copyright = '2016-2017, Dieter Werthmüller' author = 'Dieter Werthm...
docs/conf.py; issue with readthedocs
py
diff --git a/openid/server/trustroot.py b/openid/server/trustroot.py index <HASH>..<HASH> 100644 --- a/openid/server/trustroot.py +++ b/openid/server/trustroot.py @@ -305,7 +305,11 @@ class TrustRoot(object): is this a sane trust root? """ - return cls.parse(trust_root_string).isSane() + ...
[project @ TrustRoot.checkSanity: handle trust roots that do not parse gracefully]
py
diff --git a/umap/umap_.py b/umap/umap_.py index <HASH>..<HASH> 100644 --- a/umap/umap_.py +++ b/umap/umap_.py @@ -2292,7 +2292,7 @@ class UMAP(BaseEstimator): random_state = check_random_state(self.random_state) if self.verbose: - print("Construct fuzzy simplicial set") + prin...
fixed a minor bug not related to this PR. timestamp was missing in a print statement
py
diff --git a/django_prometheus/tests/end2end/testapp/test_migrations.py b/django_prometheus/tests/end2end/testapp/test_migrations.py index <HASH>..<HASH> 100644 --- a/django_prometheus/tests/end2end/testapp/test_migrations.py +++ b/django_prometheus/tests/end2end/testapp/test_migrations.py @@ -30,7 +30,7 @@ class TestM...
use assertEqual() - assertEquals is deprecated
py
diff --git a/jax/numpy/lax_numpy.py b/jax/numpy/lax_numpy.py index <HASH>..<HASH> 100644 --- a/jax/numpy/lax_numpy.py +++ b/jax/numpy/lax_numpy.py @@ -256,6 +256,8 @@ def update_numpydoc(docstr, fun, op): #Some numpy functions have an extra tab at the beginning of each line, #If this function is one of those we...
Fix some missing docstrings for Numpy functions. (#<I>)
py
diff --git a/emma2/msm/analysis/api.py b/emma2/msm/analysis/api.py index <HASH>..<HASH> 100644 --- a/emma2/msm/analysis/api.py +++ b/emma2/msm/analysis/api.py @@ -876,9 +876,5 @@ def tpt(T, A, B): if not is_transition_matrix(T): raise ValueError('given matrix T is not a transition matrix') - from...
[msm.estimation.api] reference to stallone_available removed (is always available now)
py
diff --git a/salt/config.py b/salt/config.py index <HASH>..<HASH> 100644 --- a/salt/config.py +++ b/salt/config.py @@ -255,7 +255,7 @@ DEFAULT_MINION_OPTS = { DEFAULT_MASTER_OPTS = { 'interface': '0.0.0.0', 'publish_port': '4505', - 'pub_hwm': 1000, + 'pub_hwm': 100, 'auth_mode': 1, 'user': '...
Change pub_hwm default to <I> (should be enough)
py
diff --git a/sc2/units.py b/sc2/units.py index <HASH>..<HASH> 100644 --- a/sc2/units.py +++ b/sc2/units.py @@ -96,6 +96,11 @@ class Units(list): position = position.position return min(self, key=lambda unit: unit.position.to2.distance_to(position.to2)) + def furthest_to(self, position): + ...
Add furthest_to filter mainly for units stutter stepping backwards
py
diff --git a/setup.py b/setup.py index <HASH>..<HASH> 100644 --- a/setup.py +++ b/setup.py @@ -1,6 +1,6 @@ config = { "name": "bxml", - "version": "1.0.0", + "version": "1.1.0", "description": "XML library", "url": "https://github.com/BlackEarth/bxml", "author": "Sean Harrison",
<I> for the rem
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diff --git a/src/hamster/widgets/facttree.py b/src/hamster/widgets/facttree.py index <HASH>..<HASH> 100644 --- a/src/hamster/widgets/facttree.py +++ b/src/hamster/widgets/facttree.py @@ -312,7 +312,8 @@ class FactTree(graphics.Scene, gtk.Scrollable): self.set_current_fact(self.facts[-1]) elif ev...
ignore Enter when there is no self.current_fact
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diff --git a/src/pymoca/backends/casadi/model.py b/src/pymoca/backends/casadi/model.py index <HASH>..<HASH> 100644 --- a/src/pymoca/backends/casadi/model.py +++ b/src/pymoca/backends/casadi/model.py @@ -355,7 +355,7 @@ class Model: old_vars = getattr(self, l) new_vars = [] ...
Improve scalar detection in expand vectors We can now detect a 1 by 1 matrix as a matrix, e.g. Real x[1,1]" will result in a similarly named symbol. We however still cannot distinguish between "Real x[1]" and "Real x", and both will result in a symbol named "Real x" at the moment.
py
diff --git a/neutronclient/shell.py b/neutronclient/shell.py index <HASH>..<HASH> 100644 --- a/neutronclient/shell.py +++ b/neutronclient/shell.py @@ -686,6 +686,7 @@ class NeutronShell(app.App): formatter = logging.Formatter(self.DEBUG_MESSAGE_FORMAT) else: formatter = logging.Format...
Silences the output in CLI for connection info This change try to reduce the useless urllib3 connection info in CLI by set the log level of urllib3.connectionpool. Change-Id: I9d<I>d<I>ae<I>dd<I>a<I>e<I>d<I>ffe<I> Closes-Bug: #<I>
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diff --git a/rwa/hdf5.py b/rwa/hdf5.py index <HASH>..<HASH> 100644 --- a/rwa/hdf5.py +++ b/rwa/hdf5.py @@ -322,7 +322,21 @@ class HDF5Store(FileStore): return None # don't know; should `tryPokeAny` instead def tryPokeAny(self, objname, obj, record, visited=None): + # `pokeNative` may not ra...
non-registered non-native iterables are properly routed through defaultStorable/pokeStorable
py
diff --git a/tests/conftest.py b/tests/conftest.py index <HASH>..<HASH> 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1135,6 +1135,8 @@ def sshd_server(salt_factories, sshd_config_dir, salt_master): factory.listen_port, RUNTIME_VARS.RUNNING_TESTS_USER ) ) + if salt.utils.platf...
We need to `set_path` for macOS, see #<I> for more info
py
diff --git a/tests/test_config.py b/tests/test_config.py index <HASH>..<HASH> 100644 --- a/tests/test_config.py +++ b/tests/test_config.py @@ -17,7 +17,7 @@ class TestConfig(unittest.TestCase): self.assertEqual(c.db['pass'], 'test password') def test_config_load_without_gpg(self): - figgypy.confi...
Modify to set GPG_IMPORTED in correct module
py
diff --git a/tests/test_postfetch_lastrowid.py b/tests/test_postfetch_lastrowid.py index <HASH>..<HASH> 100644 --- a/tests/test_postfetch_lastrowid.py +++ b/tests/test_postfetch_lastrowid.py @@ -3,8 +3,7 @@ from rs_sqla_test_utils import models def test_postfetch_lastrowid(redshift_session): session = redshift_...
Fix integration tests. Pep-8 line length
py
diff --git a/tests/tests_plugin_sqlite.py b/tests/tests_plugin_sqlite.py index <HASH>..<HASH> 100644 --- a/tests/tests_plugin_sqlite.py +++ b/tests/tests_plugin_sqlite.py @@ -204,6 +204,6 @@ class PluginSqliteTestCase(utils.RowsTestMixIn, unittest.TestCase): rows.export_to_sqlite(table, ':memory:', callback=my...
Fix sqlite callback test (API changed)
py
diff --git a/traffic/data/adsb/opensky.py b/traffic/data/adsb/opensky.py index <HASH>..<HASH> 100644 --- a/traffic/data/adsb/opensky.py +++ b/traffic/data/adsb/opensky.py @@ -211,7 +211,7 @@ class OpenSky(Impala): return StateVectors(r, self) - def api_tracks(self, icao24: str) -> Flight: + def api_t...
- Add time to api_tracks (#<I>)
py
diff --git a/cocaine/services/base.py b/cocaine/services/base.py index <HASH>..<HASH> 100644 --- a/cocaine/services/base.py +++ b/cocaine/services/base.py @@ -93,7 +93,7 @@ class AbstractService(object): self._writableStream = None self._readableStream = None - self._counter = itertools.count...
Set user session base ID to 1. Session 0 is now reserved for Service Presence Control, a special service allocated for every connection to manage it. As of today, it has a single 'heartbeat' method.
py
diff --git a/pyciss/opusapi.py b/pyciss/opusapi.py index <HASH>..<HASH> 100644 --- a/pyciss/opusapi.py +++ b/pyciss/opusapi.py @@ -362,15 +362,19 @@ class OPUS(object): def download_and_calibrate(img_id, map_project=True): opus = OPUS() opus.query_image_id(img_id) - - # if query returned satisfying result...
Added existance checks for download and calibrate
py
diff --git a/simpleai/search/traditional.py b/simpleai/search/traditional.py index <HASH>..<HASH> 100644 --- a/simpleai/search/traditional.py +++ b/simpleai/search/traditional.py @@ -70,6 +70,9 @@ def iterative_limited_depth_first(problem, graph_search=False, viewer=None): viewer...
Iterative deeping search raises no_more_runs event
py
diff --git a/nclib/netcat.py b/nclib/netcat.py index <HASH>..<HASH> 100644 --- a/nclib/netcat.py +++ b/nclib/netcat.py @@ -421,14 +421,20 @@ class Netcat(object): Send a shutdown signal for reading - you may no longer read from this socket. """ - return self.shutdown(socket.SHUT_RD) + ...
When duplexing, shutdown == close half
py