blob_id stringlengths 40 40 | language stringclasses 1 value | repo_name stringlengths 4 115 | path stringlengths 2 970 | src_encoding stringclasses 28 values | length_bytes int64 31 5.38M | score float64 2.52 5.28 | int_score int64 3 5 | detected_licenses listlengths 0 161 | license_type stringclasses 2 values | text stringlengths 31 5.39M | download_success bool 1 class |
|---|---|---|---|---|---|---|---|---|---|---|---|
1c030827276dc18055907359982735a9b9d634fc | Shell | PaulKnoops/Experimental_Evolution_Sequence_Repo | /RunThrough_DataCleaning_Scripts/bowtie2_map.sh | UTF-8 | 679 | 3.109375 | 3 | [] | no_license | #! /bin/bash
project_name=episodic_data_bowtie
project_dir1=/home/paul/episodicData
project_dir=/home/paul/episodicData/bowtie
index_dir=${project_dir1}/index_dir
ref_genome=${index_dir}/dmel-all-chromosome-r5.57.fasta.gz
ref_genome_base=${project_dir}/bowtie_indexes/dmel-all-chromosome-r5.57_2
trim_dir=${project_dir1}/trim_dir
bowtie2_dir=/usr/local/bowtie2/2.2.2
sam_dir=${project_dir}/sam_dir
files=(${trim_dir}/*_R1_PE.fastq.gz)
for file in ${files[@]}
do
name=${file}
base=`basename ${name} _R1_PE.fastq.gz`
${bowtie2_dir}/bowtie2 -x ${ref_genome_base} -1 ${trim_dir}/${base}_R1_PE.fastq.gz -2 ${trim_dir}/${base}_R2_PE.fastq.gz -S ${sam_dir}/${base}_bowtie_pe.sam
done
| true |
7f9d2667500f2a97b9648091e2debf0d5db339c9 | Shell | sarahDH615/song-predictions | /presentation/helpPresentation.sh | UTF-8 | 134 | 2.6875 | 3 | [] | no_license | if [ $# != 2 ]; then
echo "Usage: [input html] [output html]";
fi
sed 's:reveal.js/://cdn.jsdelivr.net/reveal.js/2.6.2/:g' $1 > $2 | true |
e071df151a065c64645feb18b2e138ce37d0878f | Shell | sardejah/wifi_tools | /base.sh | UTF-8 | 1,155 | 2.984375 | 3 | [] | no_license | #!/bin/bash
echo "usage: base.sh net_iface_name ap_iface_name"
#variables
NET_IFACE=$1
ROGUE_IFACE=$2
ESSID="yami"
#BSSID=00:24:D3:44:11:C0
CHANNEL=6
PASSWORD="ulysse31"
#kill
service dnsmasq stop
pkill hostapd
#configurations files
rm /etc/hostapd/hostapd.conf
echo "interface=$ROGUE_IFACE
hw_mode=g
channel=$CHANNEL
wmm_enabled=0
macaddr_acl=0
auth_algs=1
ignore_broadcast_ssid=0
wpa=2
wpa_key_mgmt=WPA-PSK
wpa_pairwise=TKIP
rsn_pairwise=CCMP
ssid=$ESSID
wpa_passphrase=$PASSWORD" > /etc/hostapd/hostapd.conf
rm /etc/dnsmasq.conf
echo "dhcp-range=$ROGUE_IFACE,192.168.1.10,192.168.1.20,255.255.255.0,24h
server=8.8.8.8
server=8.8.4.4" > /etc/dnsmasq.conf
#configurations routing
echo 1 > /proc/sys/net/ipv4/ip_forward
iptables -F
iptables -X
iptables -t nat -F
iptables -t nat -X
iptables -t nat -A POSTROUTING -o $NET_IFACE -j MASQUERADE
iptables -A FORWARD -i $NET_IFACE -j ACCEPT
#RUN
ifconfig $ROGUE_IFACE down
#macchanger -m $BSSID $ROGUE_IFACE
macchanger -r $ROGUE_IFACE
ifconfig $ROGUE_IFACE up
hostapd /etc/hostapd/hostapd.conf &
service dnsmasq restart
ifconfig $ROGUE_IFACE up
ifconfig $ROGUE_IFACE 192.168.1.1 netmask 255.255.255.0
| true |
96bb5cc793e8a2aaccd9afad19b0dba71c8096ff | Shell | carpproject/vobla | /testsuite/blastest/summary.sh | UTF-8 | 2,708 | 2.828125 | 3 | [
"MIT"
] | permissive | #!/bin/bash
# Copyright (c) 2013-2014, ARM Limited
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE
# Prints a summary of the BLAS test suite output.
sblas1output=output/SBLAT1.SUMM
sblas2output=output/SBLAT2.SUMM
sblas3output=output/SBLAT3.SUMM
dblas1output=output/DBLAT1.SUMM
dblas2output=output/DBLAT2.SUMM
dblas3output=output/DBLAT3.SUMM
cblas1output=output/CBLAT1.SUMM
cblas2output=output/CBLAT2.SUMM
cblas3output=output/CBLAT3.SUMM
zblas1output=output/ZBLAT1.SUMM
zblas2output=output/ZBLAT2.SUMM
zblas3output=output/ZBLAT3.SUMM
echo ""
echo "-----------------------"
echo " Summary"
echo "-----------------------"
sblas1fails=`grep -c "FAIL" ${sblas1output}`
sblas2fails=`grep -c "FAIL" ${sblas2output}`
sblas3fails=`grep -c "FAIL" ${sblas3output}`
dblas1fails=`grep -c "FAIL" ${dblas1output}`
dblas2fails=`grep -c "FAIL" ${dblas2output}`
dblas3fails=`grep -c "FAIL" ${dblas3output}`
cblas1fails=`grep -c "FAIL" ${cblas1output}`
cblas2fails=`grep -c "FAIL" ${cblas2output}`
cblas3fails=`grep -c "FAIL" ${cblas3output}`
zblas1fails=`grep -c "FAIL" ${zblas1output}`
zblas2fails=`grep -c "FAIL" ${zblas2output}`
zblas3fails=`grep -c "FAIL" ${zblas3output}`
echo ""
echo "SBLAS 1: $sblas1fails failure(s)"
echo "SBLAS 2: $sblas2fails failure(s)"
echo "SBLAS 3: $sblas3fails failure(s)"
echo ""
echo "DBLAS 1: $dblas1fails failure(s)"
echo "DBLAS 2: $dblas2fails failure(s)"
echo "DBLAS 3: $dblas3fails failure(s)"
echo ""
echo "CBLAS 1: $cblas1fails failure(s)"
echo "CBLAS 2: $cblas2fails failure(s)"
echo "CBLAS 3: $cblas3fails failure(s)"
echo ""
echo "ZBLAS 1: $zblas1fails failure(s)"
echo "ZBLAS 2: $zblas2fails failure(s)"
echo "ZBLAS 3: $zblas3fails failure(s)"
echo ""
| true |
ead933cf261dbca9672b78b06e298889b4b51ad3 | Shell | spameier/proton-bridge-docker | /entrypoint.sh | UTF-8 | 1,373 | 3.8125 | 4 | [
"MIT"
] | permissive | #!/bin/sh
# heaviliy inspired by https://github.com/sdelafond/docker-protonmail-bridge
set -eux
# constants
BRIDGE="/proton-bridge --cli --log-level debug"
BRIDGE_IMAP_PORT=1143
BRIDGE_SMTP_PORT=1025
FIFO="/fifo"
# check if required variables are set
die() { echo "$1"; exit 1; }
[ -z "$IMAP_PORT" ] && die '$IMAP_PORT is not set'
[ -z "$SMTP_PORT" ] && die '$SMTP_PORT is not set'
# initialize gpg if necessary
if ! [ -d /root/.gnupg ]; then
gpg --generate-key --batch << 'EOF'
%no-protection
%echo Generating GPG key
Key-Type:RSA
Key-Length:4096
Name-Real:proton-bridge
Expire-Date:0
%commit
EOF
fi
# initialize pass if necessary
if ! [ -d /root/.password-store ]; then
pass init proton-bridge
fi
# login to ProtonMail if neccessary
if ! [ -d /root/.cache/protonmail/bridge ]; then
[ -z "$PM_USER" ] && die '$PM_USER is not set'
[ -z "$PM_PASS" ] && die '$PM_PASS is not set'
printf "login\n%s\n%s\n" "${PM_USER}" "${PM_PASS}" | ${BRIDGE}
fi
# socat will make the connection appear to come from 127.0.0.1, since
# the ProtonMail Bridge expects that
socat TCP-LISTEN:${SMTP_PORT},fork TCP:127.0.0.1:${BRIDGE_SMTP_PORT} &
socat TCP-LISTEN:${IMAP_PORT},fork TCP:127.0.0.1:${BRIDGE_IMAP_PORT} &
# display account information, then keep stdin open
[ -e ${FIFO} ] || mkfifo ${FIFO}
{
printf "info\n";
cat ${FIFO}
} | ${BRIDGE}
| true |
a1943cd55a7b13c493f038e33a724f49ecca4e8e | Shell | tree-sitter/tree-sitter | /script/build-wasm | UTF-8 | 3,806 | 3.9375 | 4 | [
"MIT"
] | permissive | #!/usr/bin/env bash
usage() {
cat <<EOF
USAGE
$0 [--help] [--debug] [--docker]
SUMMARY
Compile the Tree-sitter WASM library. This will create two files in the
\`lib/binding_web\` directory: \`tree-sitter.js\` and \`tree-sitter.wasm\`.
REQUIREMENTS
You must have either the \`emcc\` command or the \`docker\` command
on your PATH for this to work.
OPTIONS
--help: Display this message.
--debug: Compile the library more quickly, with fewer optimizations
and more runtime assertions.
--docker: Run emscripten using docker, even if \`emcc\` is installed.
By default, \`emcc\` will be run directly when available.
EOF
}
set -e
web_dir=lib/binding_web
emscripten_flags="-O3"
minify_js=1
force_docker=0
emscripen_version=$(cat "$(dirname "$0")"/../cli/emscripten-version)
while [[ $# > 0 ]]; do
case "$1" in
--debug)
minify_js=0
emscripten_flags="-s ASSERTIONS=1 -s SAFE_HEAP=1 -O0"
;;
--help)
usage
exit 0
;;
--docker)
force_docker=1
;;
-v|--verbose)
emscripten_flags="-s VERBOSE=1 -v $emscripten_flags"
;;
*)
usage
echo "Unrecognized argument '$1'"
exit 1
;;
esac
shift
done
emcc=
if which emcc > /dev/null && [[ "$force_docker" == "0" ]]; then
emcc=emcc
elif which docker > /dev/null; then
emcc="docker run \
--rm \
-v $(pwd):/src:Z \
-u $(id -u) \
emscripten/emsdk:$emscripen_version \
emcc"
else
if [[ "$force_docker" == "1" ]]; then
echo 'You must have `docker` on your PATH to run this script with --docker'
else
echo 'You must have either `docker` or `emcc` on your PATH to run this script'
fi
exit 1
fi
mkdir -p target/scratch
runtime_methods='stringToUTF16','AsciiToString'
# Use emscripten to generate `tree-sitter.js` and `tree-sitter.wasm`
# in the `target/scratch` directory
$emcc \
-s WASM=1 \
-s INITIAL_MEMORY=33554432 \
-s ALLOW_MEMORY_GROWTH=1 \
-s MAIN_MODULE=2 \
-s FILESYSTEM=0 \
-s NODEJS_CATCH_EXIT=0 \
-s NODEJS_CATCH_REJECTION=0 \
-s EXPORTED_FUNCTIONS=@${web_dir}/exports.json \
-s EXPORTED_RUNTIME_METHODS=$runtime_methods \
$emscripten_flags \
-fno-exceptions \
-std=c99 \
-D 'fprintf(...)=' \
-D NDEBUG= \
-I lib/src \
-I lib/include \
--js-library ${web_dir}/imports.js \
--pre-js ${web_dir}/prefix.js \
--post-js ${web_dir}/binding.js \
--post-js ${web_dir}/suffix.js \
lib/src/lib.c \
${web_dir}/binding.c \
-o target/scratch/tree-sitter.js
# Use terser to write a minified version of `tree-sitter.js` into
# the `lib/binding_web` directory.
if [[ "$minify_js" == "1" ]]; then
if [ ! -d ${web_dir}/node_modules/terser ]; then
(
cd ${web_dir}
npm install
)
fi
${web_dir}/node_modules/.bin/terser \
--compress \
--mangle \
--keep-classnames \
-- target/scratch/tree-sitter.js \
> $web_dir/tree-sitter.js
else
cp target/scratch/tree-sitter.js $web_dir/tree-sitter.js
fi
mv target/scratch/tree-sitter.wasm $web_dir/tree-sitter.wasm
| true |
303955cda2f07c30425a07eff3f21fcea6dd44c2 | Shell | coneyu/zimbra-build-scripts | /01-install-build-deps.sh | UTF-8 | 1,995 | 4.03125 | 4 | [] | no_license | #!/bin/bash
#
# Install build dependencies based on distro
#
# Supports:
# Ubuntu 18.04
# Ubuntu 16.04
# CentOS 8
# CentOS 7
#
# Required dependencies: lsb-release
# Get DISTRIB_ID, install lsb_release package
# if necessary
if [ -f "/usr/bin/lsb_release" ]
then
DISTRIB_ID=`lsb_release -i | awk '{print $3}'`
else
if [ -f "/etc/redhat-release" ]
then
sudo yum install -y redhat-lsb
else
sudo apt-get install -y lsb-release
fi
DISTRIB_ID=`lsb_release -i | awk '{print $3}'`
fi
# Start installing dependencies
if [ $DISTRIB_ID == "Ubuntu" ]
then
# Get release information
DISTRIB_RELEASE=`lsb_release -r | awk '{print $2}'`
# Check if running supported version and install dependencies
# or inform user of unsupported version and exit
if [ $DISTRIB_RELEASE == "16.04" ] || [ $DISTRIB_RELEASE == "18.04" ]
then
sudo apt-get install -y software-properties-common openjdk-8-jdk ant ant-optional ant-contrib ruby git maven build-essential debhelper
else
echo "You are running an unsupported Ubuntu release!"
exit 1
fi
elif [ $DISTRIB_ID == "CentOS" ]
then
# Get release information
DISTRIB_RELEASE=`lsb_release -r | awk '{print $2}' | cut -f1 -d "."`
# Check if running supported version and install dependencies
# or inform user of unsupported version and exit
if [ $DISTRIB_RELEASE == "7" ]
then
sudo yum groupinstall -y 'Development Tools'
sudo yum install -y java-1.8.0-openjdk ant ant-junit ruby git maven cpan wget perl-IPC-Cmd rpm-build createrepo
elif [ $DISTRIB_RELEASE == "8" ]
then
sudo dnf group install -y "Development Tools"
sudo dnf module enable -y javapackages-tools
sudo dnf install -y java-1.8.0-openjdk gcc-c++ ant-junit ruby git maven cpan wget rpm-build createrepo rsync
else
echo "You are running an unsupported CentOS release!"
exit 1
fi
else
echo "Unsupported distribution!"
echo "This script only supports CentOS 7/8 and Ubuntu 16.04/18.04"
exit 1
fi
| true |
9b08cea366e1a5e4f0fb3576be02c2af44e5ac2e | Shell | Guangyu-Yang/Hadoop-deploy-scripts | /bin/hadoop-set-env.sh | UTF-8 | 1,017 | 2.59375 | 3 | [] | no_license | #!/bin/bash
#set necessary hadoop environment variables
export HADOOP_COMMON_HOME=$HADOOP_HOME
export HADOOP_HDFS_HOME=$HADOOP_HOME
export HADOOP_MAPRED_HOME=$HADOOP_HOME
export YARN_HOME=$HADOOP_HOME
export HADOOP_COMMON_LIB_NATIVE_DIR=${HADOOP_HOME}/lib/native
export HADOOP_OPTS="-Djava.library.path=${HADOOP_HOME}/lib"
#set hadoop configuration directory
export HADOOP_CONF_DIR=${HADOOP_PBS_ECOSYSTEM_HOME}/config_dir/hadoop
#set user sepcify direcotries
export DISTRIBUTED_DIR="/local_scratch/$USER"
#for yarn
export YARN_LOCAL_DIR=${DISTRIBUTED_DIR}/local
export YARN_LOG_DIR=${DISTRIBUTED_DIR}/logs
export YARN_APP_LOG_DIR=${DISTRIBUTED_DIR}/apps
export YARN_STAGING_DIR=${DISTRIBUTED_DIR}/staging
#for hdfs
export HDFS_NAME_DIR=${DISTRIBUTED_DIR}/hdfs/name
export HDFS_DATA_DIR=${DISTRIBUTED_DIR}/hdfs/data
#for hadoop
export HADOOP_TMP_DIR=${DISTRIBUTED_DIR}/tmp
#for zookeeper
export ZOOKEEPER_DATA_DIR=${DISTRIBUTED_DIR}/zookeeper/data
export ZOOKEEPER_LOG_DIR=${DISTRIBUTED_DIR}/zookeeper/logs
| true |
d4c7be432c91e01d7402c95b5d230f69fa8cb155 | Shell | DrawZeroPoint/VIPS | /python/cluster_scripts_jmlr/ptmcmc_goodwin2.sh | UTF-8 | 265 | 2.59375 | 3 | [
"MIT"
] | permissive | #!/bin/bash
for i in 10;
do
for j in `seq 1 5`;
do
echo "Running with $i chain (Trial $j)"
mpirun -n $i python -c "from experiments.PTMCMC.goodwin1_12_2 import *; sample(300000, \"ptmcmc_goodwin_300k_${i}chain_trial${j}\");";
done
done
| true |
8feeb6e69ec09984aa8af8bc3cc4e3d944bf073b | Shell | somnam/ml | /bin/run_container | UTF-8 | 1,327 | 3.890625 | 4 | [] | no_license | #!/bin/bash
check_dependencies ()
{
set -e
[[ -x "$(which docker)" ]] || (echo -e "\e[33mDocker isn't installed\e[0m" && exit 1)
set +e
}
build_docker_image ()
{
echo -e "\e[36mBuilding docker image (this may take some time).\e[0m"
local self_path=$(dirname "$0")
local root_path=$(dirname "$self_path")
local dockerfile_path=$(realpath "$root_path/etc/Dockerfile")
set -e
[[ -f "$dockerfile_path" ]] || (echo -e "\e[33mDockerfile doesn't exist\e[0m" && exit 1)
set +e
docker stop -t0 ml 1>/dev/null
docker system prune -f 1>/dev/null
docker build --quiet --tag ml --file $dockerfile_path . 1>/dev/null
}
run_container ()
{
echo -e "\e[36mRunning container\e[0m"
local self_name=$(basename "$0")
local self_path=$(dirname "$0")
local root_path=$(dirname "$self_path")
local bind_path=$(realpath "$root_path/var/")
docker run \
--detach \
--interactive \
--shm-size=256mb\
--mount type=bind,src="$bind_path",target=/home/sandbox/ml/var \
--env PATH="/home/sandbox/.local/bin:$PATH" \
--name ml \
ml:latest
}
run_container_shell ()
{
echo -e "\e[36mRunning container shell\e[0m"
docker exec -it ml bash -l
}
check_dependencies
build_docker_image
run_container
run_container_shell
| true |
27778a8e44c602e3d10def2fc4211f472f147cb2 | Shell | masarakki/dotfiles | /pkg/fcitx5 | UTF-8 | 170 | 2.546875 | 3 | [] | no_license | #!/bin/sh
if [ ! -e /etc/apt/sources.list.d/ikuya-fruitsbasket-ubuntu-fcitx5-`lsb_release -cs`.list ]; then
sudo apt-add-repository ppa:ikuya-fruitsbasket/fcitx5
fi
| true |
2b73b9a25d7c97c37288e4f3c8d5c968f4037ef6 | Shell | iamsingularity/api-umbrella | /tasks/deps/pcre | UTF-8 | 843 | 2.859375 | 3 | [
"MIT"
] | permissive | #!/usr/bin/env bash
# PCRE 8.21+ required for OpenResty's JIT regex support.
#
# We can likely drop compiling our own version and use the system version once
# we no longer need to support CentOS 6 (currently on PCRE 7.8).
pcre_version="8.43"
pcre_hash="636222e79e392c3d95dcc545f24f98c4"
set -e -u -x
source ./tasks/helpers.sh
task_working_dir
download "https://ftp.pcre.org/pub/pcre/pcre-$pcre_version.tar.bz2" "md5" "$pcre_hash"
extract_download "pcre-$pcre_version.tar.bz2"
cd "pcre-$pcre_version"
./configure \
--prefix="$INSTALL_PREFIX_EMBEDDED" \
--disable-cpp \
--enable-jit \
--enable-utf \
--enable-unicode-properties
make -j"$NPROC"
make install DESTDIR="$STAGE_DIR"
chrpath -d "$STAGE_EMBEDDED_DIR/bin/pcregrep"
chrpath -d "$STAGE_EMBEDDED_DIR/bin/pcretest"
chrpath -d "$STAGE_EMBEDDED_DIR/lib/libpcreposix.so"
stamp
| true |
cc32bbe7669aaa497bb32ecf42e1fc9b888fdd97 | Shell | flbooo/mas | /script/lint | UTF-8 | 313 | 2.9375 | 3 | [
"MIT"
] | permissive | #!/bin/bash -e
#
# script/lint
# mas
#
# Linting checks for CI "Lint" stage.
#
echo "==> 🚨 Linting mas"
echo
echo "--> 🕊️ Swift"
swiftlint lint --strict
echo
echo "--> 📜 Bash"
shopt -s extglob
# Only lint files with no extension (skipping .pl)
shellcheck --shell=bash script/!(*.*)
shopt -u extglob
| true |
577d76d33a6d72537eebad5c76171f63da649d27 | Shell | sakhnik/arch-config | /20-pacman.sh | UTF-8 | 1,799 | 3.3125 | 3 | [] | no_license | AddPackage aurutils # helper tools for the arch user repository
AddPackage pacman-contrib # Contributed scripts and tools for pacman systems
AddPackage pacutils # Helper tools for libalpm
AddPackage vifm # A file manager with curses interface, which provides Vi[m]-like environment
cat >"$(CreateFile /etc/pacman.d/hooks/paccache-remove.hook)" <<EOF
[Trigger]
Operation = Remove
Type = Package
Target = *
[Action]
Description = Cleaning pacman cache...
When = PostTransaction
Exec = /usr/bin/paccache -ruk0
EOF
cat >"$(CreateFile /etc/pacman.d/hooks/paccache-upgrade.hook)" <<EOF
[Trigger]
Operation = Upgrade
Type = Package
Target = *
[Action]
Description = Cleaning pacman cache...
When = PostTransaction
Exec = /usr/bin/paccache -rk2
EOF
cat >"$(CreateFile /etc/pacman.d/hooks/check-deps.hook)" <<EOF
[Trigger]
Operation = Upgrade
Type = Package
Target = *
[Action]
Description = Checking broken dependencies...
When = PostTransaction
Exec = /usr/local/bin/pacman-check-local-deps.sh
EOF
CopyFile /usr/local/bin/pacman-check-local-deps.sh 755
sed -i -f - "$(GetPackageOriginalFile pacman-mirrorlist /etc/pacman.d/mirrorlist)" <<'EOF'
/mirror.mirohost.net/ s/^#//
/mirrors.nix.org.ua/ s/^#//
EOF
sed -i -f - "$(GetPackageOriginalFile pacman /etc/pacman.conf)" <<EOF
/^#CacheDir/ s/^#//
/CacheDir/ a CacheDir = /var/cache/pacman/custom/
/CleanMethod/ s/.*/CleanMethod = KeepCurrent/
/^#Color/ s/^#//
/^#CheckSpace/ s/^#//
/^#VerbosePkgLists/ s/^#//
/^#ParallelDownloads/ s/.*/ParallelDownloads = 3/
/ParallelDownloads/ a ILoveCandy
/#\[custom\]/,/^$/ s/^#//
EOF
sed -i -f - "$(GetPackageOriginalFile pacman /etc/makepkg.conf)" <<EOF
s/^#MAKEFLAGS=.*/MAKEFLAGS="-j5"/
s/^COMPRESSXZ=.*/COMPRESSXZ=(xz -c -z - --threads=0)/
s/-march=[^ ]*/-march=native/
s/-mtune=[^ ]*/-mtune=native/
EOF
| true |
e5ec4b6ad9644a32fcad896f1cfef4f73849c8c0 | Shell | tsekaris/ubuntu | /ssh/add.sh | UTF-8 | 365 | 3.421875 | 3 | [] | no_license | #!/bin/sh
#Εμφάνιση των tags χωρίς το prefix.
prefix=${HOME}/.ssh/
#Το -L απαραίτητο για συντομεύσεις
key_public=${prefix}$(find -L ~/.ssh -name "*.pub" | awk '{ gsub("'${prefix}'","",$1); print $1 }'| fzf)
key_private=${key_public%????} #Βγάλε το .pub
if [ -f ${key_public} ]
then
ssh-add ${key_private}
fi
| true |
3b6c2045155e33e4b754fe846c006318f7e460ef | Shell | thatmarkenglishguy/shared_scripts | /onpath/git_gen_file_script | UTF-8 | 1,479 | 3.921875 | 4 | [
"MIT"
] | permissive | #!/usr/bin/env bash
command_template=''
ok_exit_code=0
for arg in "${@}"
do
case "${arg}" in
*)
if [ -z "${command_template}" ]
then
command_template="${arg}"
else
echo "Unexpected argument: '${arg}'" >&2
(( ++ok_exit_code ))
fi
;;
esac
done
if [ ${ok_exit_code} -ne 0 ]
then
exit ${ok_exit_code}
fi
while [ $(pwd) != "${HOME}" ] && [ $(pwd) != '/' ] && [ ! -d './.git' ]
do
cd ..
done
state='unset'
add_newline=0
function add_newline() {
if [ ${add_newline} -ne 0 ]
then
echo
else
add_newline=1
fi
}
while read -r
do
status="${REPLY:0:2}"
case "${status}" in
" M")
if [ "${state}" != 'modified' ]
then
state='modified'
add_newline
echo '# Modified'
fi
;;
??)
if [ "${state}" != 'new' ]
then
state='new'
add_newline
echo '# New'
fi
;;
esac
subpath="${REPLY:3}"
if [ "${subpath}" != '.*temp/.*' ] && [[ ! "${subpath}" =~ .*fish.* ]] && [[ ! "${subpath}" =~ .*soup.* ]]
then
path="$(pwd)/${subpath}"
if [ -n "${command_template}" ]
then
command="${command_template//\{\}/${path}}"
if [ "${command}" == "${command_template}" ]
then
echo "${command_template} ${path} \"\${@}\""
else
echo "${command} \"\${@}\""
fi
else
echo "${path} \"\${@}\""
fi
fi
done < <(git status --porcelain --untracked-files)
| true |
e355a4488747526c2e1ac440ca09c5b411684ae0 | Shell | Nycander/dotfiles | /dotfiles/oh-my-zsh-custom/martins.zsh-theme | UTF-8 | 891 | 2.828125 | 3 | [] | no_license | MARTINS_BRACKET_COLOR="%{$fg[white]%}"
MARTINS_TIME_COLOR="%{$fg[blue]%}"
MARTINS_RVM_COLOR="%{$fg[magenta]%}"
MARTINS_DIR_COLOR="%{$fg[yellow]%}"
MARTINS_GIT_BRANCH_COLOR="%{$fg[green]%}"
MARTINS_GIT_CLEAN_COLOR="%{$fg[green]%}"
MARTINS_GIT_DIRTY_COLOR="%{$fg[red]%}"
# These Git variables are used by the oh-my-zsh git_prompt_info helper:
ZSH_THEME_GIT_PROMPT_PREFIX="$MARTINS_BRACKET_COLOR:$MARTINS_GIT_BRANCH_COLOR"
ZSH_THEME_GIT_PROMPT_SUFFIX=""
ZSH_THEME_GIT_PROMPT_CLEAN=" $MARTINS_GIT_CLEAN_COLOR✓"
ZSH_THEME_GIT_PROMPT_DIRTY=" $MARTINS_GIT_DIRTY_COLOR✗"
# Core display elements:
MARTINS_TIME_="$MARTINS_BRACKET_COLOR"["$MARTINS_TIME_COLOR%T$MARTINS_BRACKET_COLOR"]"%{$reset_color%} "
MARTINS_DIR_="$MARTINS_DIR_COLOR%~\$(git_prompt_info) "
MARTINS_PROMPT="$MARTINS_BRACKET_COLOR➭ "
# Put it all together!
PROMPT="$MARTINS_TIME_$MARTINS_DIR_$MARTINS_PROMPT%{$reset_color%}"
| true |
fe4bd8e66883a4dbbb4f53579404ad4ae7ca3bcd | Shell | bgerofi/mckernel | /test/issues/1065/CT_007.sh | UTF-8 | 1,455 | 3.34375 | 3 | [] | no_license | #!/bin/sh
TESTNAME=CT_007
exec_program="./print_maps_and_cmdline"
test_program="./call_execve ${exec_program}"
. ./config
fail=0
echo "*** ${TESTNAME} start *******************"
real_path=`realpath ${exec_program}`
interp_path=`readelf -l ${exec_program} | grep "interpreter:" | sed -r 's/.*\[.*interpreter:\s(.*)\].*/\1/'`
interp_real_path=`realpath ${interp_path}`
echo "exec : ${test_program}"
#${test_program} | tee ./${TESTNAME}.log
${MCEXEC} ${test_program} 1> ./${TESTNAME}_maps.log 2> ./${TESTNAME}_cmdline.log
if [ X$? != X0 ]; then
fail=1
fi
cat ./${TESTNAME}_maps.log
echo ""
echo "** grep ${real_path} from maps"
grep -a -e "${real_path}$" ./${TESTNAME}_maps.log
if [ X$? = X0 ]; then
echo "[OK] ${real_path} is found"
else
echo "[NG] ${real_path} is not found"
fail=1
fi
echo ""
echo "** grep ${interp_real_path} from maps"
grep -a -e "${interp_real_path}$" ./${TESTNAME}_maps.log
if [ X$? = X0 ]; then
echo "[OK] ${interp_real_path} is found"
else
echo "[NG] ${interp_real_path} is not found"
fail=1
fi
cat ./${TESTNAME}_cmdline.log
echo ""
echo "** grep ${exec_program} from cmdline"
grep -a -e "${exec_program}" ./${TESTNAME}_cmdline.log
if [ X$? = X0 ]; then
echo "[OK] ${exec_program} is found"
else
echo "[NG] ${exec_program} is not found"
fail=1
fi
if [ X$fail = X0 ]; then
echo "*** ${TESTNAME} PASSED"
else
echo "*** ${TESTNAME} FAILED"
fi
echo ""
rm ./${TESTNAME}_maps.log
rm ./${TESTNAME}_cmdline.log
| true |
9860fa5216d92cd5192b88c7e4c220fb6dfd2bd8 | Shell | bopopescu/twemproxy-redis | /dists/redis-instances/bin/sentinel_shutdown.sh | UTF-8 | 689 | 3.515625 | 4 | [] | no_license | #!/bin/sh
cwd=`cd $(dirname $0)/..;pwd`
cd $cwd
function shutdown_instance(){
insname=""
for arg in $@; do
key=`echo $arg|awk -F= '{ print $1 }'`
val=`echo $arg|awk -F= '{ print $2 }'`
if [ $key = "name" ]; then
insname=$val
break
fi
done
if [ -z "$insname" ]; then
return 0
fi
insws="$cwd/data/$insname"
cd $insws
pidfile="$insws/var/sentinel.pid"
pid=`cat $pidfile`
procinfo=`ps -ef|grep -w $pid|grep -v grep`
while [ -n "$procinfo" ]; do
kill $pid
sleep 0.5
procinfo=`ps -ef|grep -w $pid|grep -v grep`
done
echo "redis sentinel process $pid shutdown"
cd $cwd
}
while read data; do
shutdown_instance $data
done < config/sentinel.conf
| true |
3a5714941cb96a60a3207ddc04db5a47a7439487 | Shell | Iristyle/lcow | /tests/cases/100_hostvol/070_socket_volume/socket_test.sh | UTF-8 | 219 | 3.640625 | 4 | [
"Apache-2.0"
] | permissive | #!/bin/sh
set -e
set -x
FILE=$1
nc -lU "$FILE" &
pid=$!
sleep 1
TYPE=$(stat -c %F "$FILE")
kill "$pid"
if [ "$TYPE" != "socket" ]; then
echo "$FILE is not a unix domain socket: $TYPE != socket"
exit 1
fi
| true |
997ef4a39874a9e6b833bcea854e7d7c380ea8b8 | Shell | open-estuary/appbenchmark | /apps/hadoop/hadoop_test1/scripts/pb_build.sh | UTF-8 | 2,026 | 3.296875 | 3 | [] | no_license | #!/bin/bash
. ${APP_ROOT}/toolset/setup/basic_cmd.sh
######################################################################################
# Notes:
# To build ProtoBuffer
#
#####################################################################################
BUILD_DIR="./build_protobuffer"
CTAG_NAME="2.5.0"
TARGET_DIR=$(tool_get_first_dirname ${BUILD_DIR})
#######################################################################################
PROTOC_VERSION="$(protoc --version)"
echo "${PROTOC_VERSION}"
if [[ "${PROTOC_VERSION}" =~ "2.5.0" ]] ; then
echo "ProtoBuffer-2.5.0 has been built successfully"
exit 0
fi
####################################################################################
# Prepare for build
####################################################################################
$(tool_add_sudo) rm -fr ${BUILD_DIR}
mkdir ${BUILD_DIR}
pushd ${BUILD_DIR} > /dev/null
tar -zxvf ${APP_ROOT}/apps/hadoop/hadoop_test1/src/protobuf-2.5.0.tar.gz -C ./
TARGET_DIR=$(tool_get_first_dirname ./)
cp ${APP_ROOT}/apps/hadoop/hadoop_test1/src/platform_macros.h ./${TARGET_DIR}/src/google/protobuf/stubs/platform_macros.h
cp ${APP_ROOT}/apps/hadoop/hadoop_test1/src/atomicops_internals_arm64_gcc.h ./${TARGET_DIR}/src/google/protobuf/stubs/atomicops_internals_arm64_gcc.h
cp ${APP_ROOT}/apps/hadoop/hadoop_test1/src/Makefile.am ./${TARGET_DIR}/src/Makefile.am
cp ${APP_ROOT}/apps/hadoop/hadoop_test1/src/atomicops.h ./${TARGET_DIR}/src/google/protobuf/stubs/atomicops.h
echo "Finish build preparation......"
######################################################################################
# Build OpenJDK
#####################################################################################
#Build Step 1: auto generation
cd ${TARGET_DIR}
$(tool_add_sudo) chmod 755 ./configure
./configure --prefix=/usr
make -j32
$(tool_add_sudo) make install
$(tool_add_sudo) ldconfig
popd > /dev/null
##########################################################################################
| true |
99b84d818b8bc71e84ec1fcd02e23c9a8d968d0d | Shell | imsekhar04/core-plans | /azure-cli/tests/tests.bats | UTF-8 | 360 | 3.46875 | 3 | [
"Apache-2.0"
] | permissive | TEST_PKG_VERSION="$(echo $TEST_PKG_IDENT | cut -d/ -f 3)"
@test "az exe runs" {
run hab pkg exec $TEST_PKG_IDENT az
[ $status -eq 0 ]
}
@test "az exe outputs the expected version $TEST_PKG_VERSION" {
result="$(hab pkg exec $TEST_PKG_IDENT az --version | grep 'azure-cli (' | awk '{gsub(/azure-cli\ \(|\)/,"")}1')"
[ "$result" = $TEST_PKG_VERSION ]
}
| true |
6d101ec3c2886b07e57c4f1032a246fd642900ad | Shell | Parshuramsk/FedModules | /build.sh | UTF-8 | 542 | 2.5625 | 3 | [] | no_license | #!/bin/bash
export MESOS_HOME_DIR="$HOME/src/mesos"
COMPILER="g++"
THIRD_PARTY="$MESOS_HOME_DIR/build/3rdparty/libprocess/3rdparty"
HEADER_FILES=" -I $MESOS_HOME_DIR/include -I $MESOS_HOME_DIR/src -I $MESOS_HOME_DIR/build/src -I $MESOS_HOME_DIR/3rdparty/libprocess/include -I $THIRD_PARTY/boost-1.53.0 -I$THIRD_PARTY/glog-0.3.3/src -I $THIRD_PARTY/stout/include -I $THIRD_PARTY/protobuf-2.5.0/src"
$COMPILER $HEADER_FILES -lmesos -std=c++11 -fPIC -shared ./FedAllocator/src/FedAllocator.cpp ./FedComm/src/FedComm.cpp -o libFedModules.so
| true |
785c12f13e56f8a7535df6f2cc5e57aee824afae | Shell | TjlHope/scripts | /bin/cpu_mem_usage | UTF-8 | 7,384 | 4.09375 | 4 | [] | no_license | #!/bin/sh
# SCRIPTS_DIR/bin/cpu_mem_usage
### Outputs the current cpu and memory usage figures.
# source library functions
[ -h "${0}" ] &&
script_p="$(readlink -f "${0}")" ||
script_p="${0}"
lib_d="${script_p%/*/*}/lib"
. "${lib_d}/percent_blocks.sh"
. "${lib_d}/check_type.sh"
. "${lib_d}/colour.sh"
. "${lib_d}/output.sh"
# Use $SHM_D (if defined) for storage, fallback of /tmp/$USER
shm_d="${SHM_D:-/tmp/${USER}}"
{
[ -d "${shm_d}" ] || {
[ -w "${shm_d%/*}" ] &&
mkdir "${smh_d}"
}
} &&
[ -w "${shm_d}" ] ||
die "Cannot access shared memory directory: ${shm_d}."
cpu_usage () {
# Function to get current cpu usage, stores the current, and ${1:-inf}
# previous values in ${SHM_D}/cpu; and outputs the current, and ${1:-0}
# from the file each call.
## Variables
local cpu v a t p _a _t _p fl="${shm_d}/cpu"
## Calculate current
# get the total cpu line from /proc/stat: "IDLE|T1 T2 T3 IDLE T5 ... TN"
cpu="$(sed -n /proc/stat -e \
's/^cpu\s\+\(\([0-9]\+\s\+\)\{3\}\)\([0-9]\+\)\(.*\)$/\3|\1\3\4/p')"
# get the previous values (defaults if necessary)
[ -f "${fl}" ] &&
read _a _t _p < "${fl}" ||
echo "0 0 0" > "${fl}"
# sum all the values after the bar to get the total
for v in ${cpu#*|}
do
t=$(( ${t-0} + ${v})) # total time (cs)
done
a=$(( ${t} - ${cpu%%|*} )) # active time (cs)
# percent use
p=$(( (1000 * (${a} - ${_a:-0}) / (${t} - ${_t:-0}) + 5) / 10 ))
## Insert new value into file and rotate if necessary
sed -i "${fl}" -n -e "\
1 {
h
s:^.*$:${a} ${t} ${p}:p
g
}
1,${1:-$} p
"
## Output values
a=""; t=""; p="" # reset values for file read
while read _a _t _p # for each line in file
do
[ -n "${a}" -a -n "${t}" -a -n "${p}" ] && {
# output the percentage
${verbose-false} &&
echo "cpu: (${a} - ${_a}) / (${t} - ${_t}) = ${p}" >&2
echo "${p}"
# only output ${1:-1} values
[ -n "${1}" ] ||
break
}
# next set of values
a="${_a}"; t="${_t}"; p="${_p}"
done < "${fl}"
}
mem_usage () {
# Function to get current memory usage, stores the current, and ${1:-inf}
# previous values in ${SHM_D}/mem; and outputs the current, and ${1:-0}
# from the file each call.
# If a -u flag is given, rather than using the active memory, the used
# (non-free/active & inactive) memory is used.
## Variables
local t='' f='' a='' u='' p='' _u='' _t='' _p='' \
fl="${shm_d}/mem" active=true
{ [ "$1" = -u ] && shift || [ "$2" = -u ]; } && active=false
# check the previous values (defaults if necessary)
[ -f "$fl" ] &&
read u t p < "$fl" ||
echo "0 0 0" > "$fl"
## Calculate current
# get the total, active & free values from /proc/meminfo
eval "$(sed /proc/meminfo -nEe '
s/^MemTotal:\s+([0-9]+).*$/t=\1;/p; t;
s/^MemFree:\s+([0-9]+).*$/f=\1;/p; t;
s/^Active:\s+([0-9]+).*$/a=\1;/p; t;
')"
t="$(( t / 1024 ))" # Total memory (MB)
if "$active" && [ -n "$a" ]
then u="$(( a / 1024 ))" # Active memory (MB)
else u="$(( t - ( f / 1024 ) ))" # Non-Free memory (MB)
fi
p=$(( (1000 * u / t + 5) / 10 )) # percent used
## Insert new value into file and rotate if necessary
sed -i "$fl" -ne "
1 {
h
s:^.*$:$u $t $p:p
g
}
1,${1:-$} p
"
## Output values
u=""; t=""; p="" # reset values for file read
while read _u _t _p # for each line in file
do
if [ -n "$u" ] && [ -n "$t" ] && [ -n "$p" ]
then
# output the percentage
${verbose-false} &&
echo "mem: $u / $t = $p" >&2
echo "$p"
# only output ${1:-1} values
[ -n "$1" ] ||
break
fi
# next set of values
u="$_u"; t="$_t"; p="$_p"
done < "$fl"
}
while [ -n "${1}" ]
do
[ -z "${1##--*}" ] &&
opt_patt="--*=" ||
opt_patt="-[a-z]"
case "${1}" in
-b|--blocks)
blocks=true
;;
-w|--words)
verbose=true
;;
-h*|--hist*|--history*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
hist="${1#${opt_patt}}"
check_int ${hist} ||
die "-h requires an integer argument"
;;
-n*|--num*|--number*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
number="${1#${opt_patt}}"
check_int ${number} ||
die "-n requires an integer argument"
;;
-v|--verb|--verbose)
verbose=true
;;
-u|--used|--used-mem)
used=-u
;;
-s*|--sep*|--seperator*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
sep_str="${1#${opt_patt}}"
;;
--start*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
start_str="${1#${opt_patt}}"
;;
--end*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
end_str="${1#${opt_patt}}"
;;
-c*|--fg-colour*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_fg_colour "${1#${opt_patt}}"
;;
-k*|--bg-colour*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_bg_colour "${1#${opt_patt}}"
;;
-a*|--attr*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_attr "${1#${opt_patt}}"
;;
--cpu-c*|--cpu-fg-colour*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_fg_colour "${1#${opt_patt}}" "cpu_"
;;
--cpu-k*|--cpu-bg-colour*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_bg_colour "${1#${opt_patt}}" "cpu_"
;;
--cpu-a|--cpu-attr*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_attr "${1#${opt_patt}}" "cpu_"
;;
--mem-c*|--mem-fg-colour*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_fg_colour "${1#${opt_patt}}" "mem_"
;;
--mem-k*|--mem-bg-colour*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_bg_colour "${1#${opt_patt}}" "mem_"
;;
--mem-a*|--mem-attr*)
[ "${1#${opt_patt}?}" = "${1}" ] &&
shift
set_attr "${1#${opt_patt}}" "mem_"
;;
-h|-?|--help)
echo "usage: ${0} [-h N] [-n N] [-v] (-b|-w)"
echo
echo "Display the current cpu and memory usage figures."
echo " -b, --blocks"
echo " display using unicode block characters"
echo " -w, --words"
echo " display using alphanumeric characters"
echo " -h N, --history=N"
echo " show N historical values as well"
echo " -n N, --number=N"
echo " (-b only) display using blocks of width N"
echo " -u, --used, --used-mem"
echo " show used (non-free) memory, not just active"
echo " -v, --verbose"
echo " more verbose display"
echo " -s STR, --seperator=STR"
echo " string to seperate cpu and mem displays"
echo " --(|cpu-|mem-)(c|k|a)=VAL,"
echo " --(|cpu-|mem-)(fg-colour|bg-colour|attr)=VAL"
echo " set the (normal|cpu|mem) output formating"
exit 0
esac
shift
done
cpu="$(cpu_usage ${hist})"
mem="$(mem_usage ${used} ${hist})"
if ${blocks-false}
then
if [ ${hist-0} -gt 0 ] || [ ${number-1} -eq 1 ]
then
pc_block="pc_vblock"
elif [ ${hist-1} -eq 1 ] && [ ${number-1} -gt 1 ]
then
pc_block="pc_hblock"
else
die "'-h ${hist}' can only be used with '-n 1'"
fi
cpu="$(${pc_block} ${cpu} ${number})"
mem="$(${pc_block} ${mem} ${number})"
sep_str="${sep_str}" # default is no speration between blocks;
# assignmentneeded as use ${sep- } to add a
# space otherwise
fi
# Output representation
echo "\
${fmt}${start_str}\
${cpu_fmt}${cpu}\
${fmt}${sep_str- }\
${mem_fmt}${mem}\
${fmt}${end_str}\
"
| true |
9ae1a45ad4cc970ff46419be9f9bc5bd4de08b5a | Shell | weideng1/nosqlbench | /nb5/build-bin.sh | UTF-8 | 2,148 | 3.34375 | 3 | [
"Apache-2.0"
] | permissive | #!/usr/bin/env bash
#
# Copyright (c) 2022 nosqlbench
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
set -e
set -x
APPDIR=target/NB.AppDir
JAR_NAME="nb5.jar"
BIN_NAME="nb5"
JAVA_VERSION="17"
mkdir -p ${APPDIR}
if [ ! -f target/${JAR_NAME} ]
then
printf "target/${JAR_NAME} does not exist"
exit 2
fi
rsync -av appimage/skel/ "${APPDIR}/"
cp target/${JAR_NAME} "${APPDIR}/usr/bin/${JAR_NAME}"
mkdir -p "${APPDIR}/usr/bin/jre"
if [ "$JAVA_VERSION" == "17" ]
then
if [ ! -d "cache/jdk17" ] ; then
printf "getting jdk17 once into cache/jdk17\n";
mkdir -p cache
(cd cache && (
wget -c https://github.com/adoptium/temurin17-binaries/releases/download/jdk-17.0.1%2B12/OpenJDK17U-jdk_x64_linux_hotspot_17.0.1_12.tar.gz
tar -xf OpenJDK17U-jdk_x64_linux_hotspot_17.0.1_12.tar.gz
mv jdk-17.0.1+12 jdk17
rm OpenJDK17U-jdk_x64_linux_hotspot_17.0.1_12.tar.gz
))
fi
rsync -av cache/jdk17/ "${APPDIR}/usr/bin/jre/"
else
printf "Unknown java version indicated in $0"
exit 2
fi
if [ ! -f "${APPDIR}/AppRun" ]
then
( cd ${APPDIR} && (
printf "Linking AppRun...\n";
ln -s usr/bin/${BIN_NAME} AppRun
))
fi
printf "getting appimage tool and building image...\n";
( cd target && (
if [ ! -x "appimagetool-x86_64.AppImage" ]
then
wget -c https://github.com/AppImage/AppImageKit/releases/download/12/appimagetool-x86_64.AppImage
chmod +x appimagetool-x86_64.AppImage
fi
ARCH=x86_64 ./appimagetool-x86_64.AppImage NB.AppDir ${BIN_NAME}
# && chmod +x ${BIN_NAME}
)
)
if [ -x "target/${BIN_NAME}" ]
then
printf "nosqlbench AppImage binary was built at target/${BIN_NAME}\n";
fi
| true |
22777b8772ede53e8d3857070fae555b8d6ed4ba | Shell | Winddoing/CodeWheel | /shell/color.sh | UTF-8 | 788 | 2.75 | 3 | [] | no_license | #!/bin/bash
function out_red() {
echo -e "\e[01;31m$@\e[0m"
}
out_red "test read"
function out_yellow() {
echo -e "\e[33m$@\e[0m"
}
out_yellow "test yellow"
function out_green() {
echo -e "\e[32m$@\e[0m"
}
out_green "test green"
function out_blue() {
echo -e "\e[34m$@\e[0m"
}
out_blue "test blue"
echo -e "\033[31m 红色字 \033[0m"
echo -e "\033[34m 黄色字 \033[0m"
echo -e "\033[41;33m 红底黄字 \033[0m"
echo -e "\033[41;37m 红底白字 \033[0m"
echo -e "\033[30m 黑色字 \033[0m"
echo -e "\033[31m 红色字 \033[0m"
echo -e "\033[32m 绿色字 \033[0m"
echo -e "\033[33m 黄色字 \033[0m"
echo -e "\033[34m 蓝色字 \033[0m"
echo -e "\033[35m 紫色字 \033[0m"
echo -e "\033[36m 天蓝字 \033[0m"
echo -e "\033[37m 白色字 \033[0m"
| true |
91968712f39ef3a043385a9dc390a205cfca41d9 | Shell | Misterblue/misterblue.github.io | /_tools/oldImagesMakeThumbs.sh | UTF-8 | 698 | 3.75 | 4 | [
"CC0-1.0"
] | permissive | #! /bin/bash
# Scan all jpg's in the old images dir and create the thumbs.
OLDIMAGESDIR=/home/Robert/dev/misterblue.github.io/images/oldimages
THUMBSDIR=$OLDIMAGESDIR/thumb
SIZE=150
TEMPFILE=xx.jpg
TEMPFILE2=xx2.ppm
EXIFFILE=exif.exif
SEDFILE=xxsed.sed
rm -f $TEMPFILE $TEMPFILE2 $EXIFFILE $SEDFILE
cd "$OLDIMAGESDIR"
ls *.jpg | while read file ; do
if [[ -e "$file" ]] ; then
cat "$file" | jpegtopnm --exif=$EXIFFILE --quiet > $TEMPFILE2
cat $TEMPFILE2 | pamscale --xyfit $SIZE $SIZE | ppmtojpeg --exif=$EXIFFILE --comment "Copyright 2015, Robert Adams" --quality=75 > $TEMPFILE
mv $TEMPFILE "$THUMBSDIR/$file"
fi
done
rm -f $TEMPFILE $TEMPFILE2 $EXIFFILE $SEDFILE
| true |
192f22a1772e5de4b343f0e7c89a639fd2ab3757 | Shell | AlexzxelA/beame-gatekeeper | /install/service.sh | UTF-8 | 529 | 3.921875 | 4 | [] | no_license | #!/bin/bash
set -eu
err_trap_func() {
echo "ERROR: Installation as service failed"
}
trap err_trap_func ERR
if [[ $EUID -ne 0 ]]; then
echo "Please run this script as root."
exit 1
fi
if [[ $(uname -s) == Darwin ]];then
echo "+ Running Mac OS installation"
SCRIPT_DIR=$(zsh -c 'echo ${0:A:h}' "$0")
exec "$SCRIPT_DIR/launchd-service.zsh" "$@"
else
echo "+ Running systemd installation"
SCRIPT_DIR="$( cd "$( dirname "$( realpath "${BASH_SOURCE[0]}" )" )" && pwd )"
exec "$SCRIPT_DIR/systemd-service.sh" "$@"
fi
| true |
0e1373407bb2f14a08e014cc3d0aad2a104dc224 | Shell | slackpanos/SlackOnly-SlackBuilds | /audio/jack-keyboard/jack-keyboard.SlackBuild | UTF-8 | 3,032 | 3.796875 | 4 | [
"MIT"
] | permissive | #!/bin/sh
# Slackware build script for jack-keyboard
# Written by B. Watson (yalhcru@gmail.com)
# Licensed under the WTFPL. See http://www.wtfpl.net/txt/copying/ for details.
# 20180628 bkw: update for v2.7.2.
# 20170218 bkw: make lash optional.
# 20170216 bkw:
# - Updated for v2.7.1. Apparently, upstream released 2.7.1 in 2012, but
# never got around to updating their web page, which still says that
# 2.5 is the latest release. It took me this long (5 years!) to notice
# there was a newer version on their sourceforge download page. Note
# that 2.5 used autotools but 2.7.1 uses cmake, so this script can no
# longer be used to build the old version.
# - Add capability stuff.
PRGNAM=jack-keyboard
VERSION=${VERSION:-2.7.2}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
i?86) ARCH=i586 ;;
arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;;
esac
fi
CWD=$(pwd)
TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
if [ "$ARCH" = "i586" ]; then
SLKCFLAGS="-O2 -march=i586 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "x86_64" ]; then
SLKCFLAGS="-O2 -fPIC"
LIBDIRSUFFIX="64"
else
SLKCFLAGS="-O2"
LIBDIRSUFFIX=""
fi
set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf $PRGNAM-$VERSION
tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
cd $PRGNAM-$VERSION
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
-exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
-exec chmod 644 {} \;
case "${LASH:-auto}" in
auto)
if pkg-config --exists lash-1.0; then
LASHOPT="ON"
else
LASHOPT="OFF"
fi ;;
y*|Y*|t*|T*|on|ON|1)
LASHOPT="ON" ;;
*) LASHOPT="OFF" ;;
esac
echo "LASHOPT=\"$LASHOPT\""
mkdir -p build
cd build
cmake \
-DCMAKE_C_FLAGS:STRING="$SLKCFLAGS" \
-DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS" \
-DCMAKE_INSTALL_PREFIX=/usr \
-DLIB_SUFFIX=${LIBDIRSUFFIX} \
-DMAN_INSTALL_DIR=/usr/man \
-DCMAKE_BUILD_TYPE=Release .. \
-DLashEnable=$LASHOPT
make
make install DESTDIR=$PKG
cd ..
make
make install DESTDIR=$PKG
strip $PKG/usr/bin/$PRGNAM
gzip -9 $PKG/usr/man/man1/$PRGNAM.1
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a AUTHORS COPYING NEWS README* TODO $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
mkdir -p $PKG/install
cat $CWD/slack-desc > $PKG/install/slack-desc
cat $CWD/slack-required > $PKG/install/slack-required
cat $CWD/doinst.sh > $PKG/install/doinst.sh
# Only add capability stuff if not disabled:
if [ "${SETCAP:-yes}" = "yes" ]; then
cat $CWD/setcap.sh >> $PKG/install/doinst.sh
# Only allow execution by audio group
chown root:audio $PKG/usr/bin/$PRGNAM
chmod 0750 $PKG/usr/bin/$PRGNAM
fi
cd $PKG
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
| true |
c64e72eaab0bfd7f446f45b0f03e496b0cdbbb75 | Shell | justinba1010/USCCodeathon-S21-Lower | /polyLeaping/genSamples.sh | UTF-8 | 362 | 2.9375 | 3 | [] | no_license | #on windows, first use dos2unix genSamples.sh to get rid of windows characters
# then run this file using Bash
# (accessed through start menu -> run -> Bash)
#or using cmd use bash testgen.sh
for i in {0..1}
do
echo $i | python3 ./mkin.py > samples/input/input$i.txt
python3 solutions/sol.py < samples/input/input$i.txt > samples/output/output$i.txt
done
| true |
67f9f0081d5d2cb9c6012fef82c507e2b50eefdb | Shell | yasserfarouk/dotfiles | /quick-install.sh | UTF-8 | 2,809 | 3.3125 | 3 | [] | no_license | #!/usr/bin/env zsh
echo "Updating init files with replacements"
echo "-------------------------------------"
export PATH="~/.pyenv/bin:$PATH"
eval "$(pyenv init -)"
eval "$(pyenv virtualenv-init -)"
# pyenv activate neovim2
# neovim2_py=`pyenv which python` # Note the path
# echo "neovim2 in $neovim2_py"
# pyenv activate neovim3
# neovim3_py=`pyenv which python` # Note the path
# echo "neovim3 in $neovim3_py"
# function replace_tag_in_file(){
# python -c "s=open('$3', 'r').read().replace('$1','$2'); open('$3', 'w').write(s)" 2>&1 >/dev/null
# }
# function replace_tag_in_all(){
# for file_name in $(find ~/.dotfiles -type f -and ! -name '*.otf' -and ! -name '.*' -and ! -path '*tmux/plugins*' -and ! -name '*.png' -and ! -name 'Makefile' -and ! -path '*z*' );
# do
# python -c "s=open('$file_name', 'r').read().replace('$1','$2'); open('$file_name', 'w').write(s)" 2>&1 >/dev/null
# done
# for file_name in $(find ~/.ysupport -type f -and ! -name '*.otf' -and ! -name '.*' -and ! -path '*tmux/plugins*' -and ! -name 'Makefile' -and ! -name '*.png' -and ! -path '*z*');
# do
# python -c "s=open('$file_name', 'r').read().replace('$1','$2'); open('$file_name', 'w').write(s)" 2>&1 >/dev/null
# done
# }
#
# replace_tag_in_file '<<nvimpy2>>' $neovim2_py "$HOME/.config/nvim/init.vim"
# replace_tag_in_file '<<nvimpy3>>' $neovim3_py "$HOME/.config/nvim/init.vim"
#
#
# cd $HOME
# echo "running RCM rcup command"
# echo "This is symlink the rc files"
#
# case "$(uname -s)" in
# Darwin)
# rcup
# ;;
# Linux)
# rcup
# export PATH="$(brew --prefix)/bin:$(brew --prefix)/sbin:$PATH"
# echo "export PATH='$(brew --prefix)/bin:$(brew --prefix)/sbin'":'"$PATH"' >>~/.bashrc
# ;;
# esac
# echo "---------------------------------------------------------"
echo "Installing Plug"
curl -fLo ~/.vim/autoload/plug.vim --create-dirs https://raw.githubusercontent.com/junegunn/vim-plug/master/plug.vim
echo "Installing vim plugins"
echo "----------------------"
vim +PlugInstall +UpdateRemotePlugins +qa
nvim +PlugInstall +UpdateRemotePlugins +CheckHealth +qa
echo "Changing to zsh"
chsh -s $(which zsh)
echo "You will need to log out for this to take effect"
echo "----------------------------------------------"
case "$(uname -s)" in
Darwin)
echo "running oxs defaults"
./osx.sh
;;
Linux)
echo 'Linux ... no osx defaults'
;;
esac
echo "Correcting group permissions"
echo "----------------------------"
compaudit | xargs chmod g-w
./qupdate
echo "------------------------------------------------------------"
echo " All done! "
echo "Change your terminal font to <Source Code Pro for Powerline>"
echo "------------------------------------------------------------"
exit 0
| true |
6b7534c4f02378535893a75337746366c40393e5 | Shell | GerryLon/dev-scripts | /install_basic.sh | UTF-8 | 14,906 | 3.8125 | 4 | [
"Apache-2.0"
] | permissive | #!/bin/bash
# work dir
scriptDir=$(cd `dirname $0`; pwd)
# import public scripts
. "$scriptDir/public/index.sh"
appName="${0##*[\\/]}" # xx.sh
appName=(${appName//\./ })
logFile="$scriptDir/${appName[0]}"".log" # xx.log
etcProfile='/etc/profile'
startDir=`pwd`
appConf="$scriptDir/app.properties"
softDir=`getProperty $appConf softDir`
centosVersion=`cat /etc/redhat-release | sed -r 's/.* ([0-9]+)\..*/\1/'`
echoInfo "centos version: $centosVersion"
rm -rf $logFile
echoInfo "install log will be set at:"
echoInfo "$logFile"
echo
# write log to $logFile when install soft
function appLog() {
log $1 $logFile
}
function failedAppLog() {
log "failed: $1" $logFile
}
function successAppLog() {
log "success: $1" $logFile
}
if [ $UID -ne 0 ]; then
echoInfo 'You are not root user'
exit 1
fi
[ ! -d $softDir ] && echoInfo "$softDir not exist, creating..." && mkdir -p "$softDir"
# install wget
if ! isCmdExist wget; then
echoInfo 'installing wget'
yum install -y wget
else
echoInfo 'wget was already installed'
fi
# install aliyun yum repository
echoInfo 'checking aliyun yum repository'
if ! yum repolist | grep -q 'aliyun.com'; then
echoInfo 'installing aliyun yum repository ...'
mv /etc/yum.repos.d/CentOS-Base.repo /etc/yum.repos.d/CentOS-Base.repo.bak
wget -O "/etc/yum.repos.d/CentOS-Base.repo http://mirrors.aliyun.com/repo/Centos-${centosVersion}.repo"
yum makecache
else
echoInfo 'aliyun yum repository was already installed'
fi
# install sys tools
function installSystools() {
local systools=""
local systoolsFromConf=`getProperty $appConf systools`
local systoolsArr=(${systoolsFromConf//,/ }) # split by , to array
for i in "${!systoolsArr[@]}"; do
# if ! isCmdExist "${systoolsArr[i]}"; then
rpm -q "${systoolsArr[i]}"
if [ $? -ne 0 ]; then
systools="$systools ${systoolsArr[i]}"
else
echoInfo "${systoolsArr[i]} was already installed"
fi
done
if [ -n "$systools" ]; then
echoInfo "installing $systools"
# notice: $systools instead of "$systools"
yum install -y $systools
fi
cat /etc/vimrc | grep -q 'set ts=4'
if [ $? -ne 0 ]; then
echo "set nu
set ts=4
set ai
set shiftwidth=4
" >> /etc/vimrc
fi
}
installSystools
function installGit() {
local soft=git
local installFlag=$(getProperty $appConf $soft)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install $soft"
return
fi
local gitVersion=$(getProperty $appConf gitVersion)
local gitRoot=$(getProperty $appConf gitRoot)
# install git
if ! isCmdExist git; then
echoInfo 'installing git ...'
# kernel dependency
yum install -y curl-devel expat-devel gettext-devel openssl-devel zlib-devel
# avoid "tclsh failed; using unoptimized loading"
yum install -y tcl build-essential tk gettext
# install from source code,will cause error, should install below
yum install -y perl-ExtUtils-CBuilder perl-ExtUtils-MakeMaker
local gitBall="git-$gitVersion.tar.xz"
wget -O "$softDir/$gitBall" -c "https://mirrors.edge.kernel.org/pub/software/scm/git/$gitBall"
cd $softDir && tar -xJf "$gitBall"
cd "$softDir/git-$gitVersion"
./configure --prefix="$gitRoot"
make all
make install
if [ $? -ne 0 ]; then
echoWarn "install $soft failed!!!"
return
fi
lnsfFiles "$gitRoot/bin" "/usr/local/bin"
git version >/dev/null 2>&1
if [ $? -ne 0 ]; then
failedAppLog "install git"
echoError 'install git failed, please check!'
return 1
else
echoInfo 'install git success'
fi
cd $startDir
else
echoInfo 'git was already installed'
fi
git version
echo 'config git alias'
git config --global alias.st "status"
git config --global alias.br "branch"
git config --global alias.co "checkout"
git config --global alias.cm "commit -m"
git config --global alias.df "diff"
git config --global alias.sh "stash"
}
installGit
function installGo() {
local installFlag=$(getProperty $appConf go)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install golang"
return
fi
# install golang
if ! isCmdExist go; then
echoInfo 'installing golang ...'
goroot=`getProperty $appConf goroot`
gopath=`getProperty $appConf gopath`
local goVersion=`getProperty $appConf goVersion`
test ! -d $goroot && mkdir -p $goroot
test ! -d $gopath && mkdir -p $gopath
golangBall="go${goVersion}.linux-amd64.tar.gz"
wget -O "$softDir/$golangBall" -c "https://studygolang.com/dl/golang/$golangBall"
if [ $? -ne 0 ]; then
echoError 'download golang tarball failed, please check!'
exit 1
fi
tar -C /usr/local -xzf "$softDir/$golangBall"
echo "# added on `date +"%Y-%m-%d %H:%M:%S"`
export GOROOT=$goroot
export GOPATH=$gopath
export GOBIN=
export PATH=\$PATH:\$GOROOT/bin:\${GOPATH//://bin:}/bin" >> $etcProfile
source $etcProfile
go version >/dev/null 2>&1
if [ $? -ne 0 ]; then
failedAppLog "install go"
echoError 'install golang failed, please check!'
exit 1
else
echoInfo 'install golang success'
fi
else
echoInfo 'go was already installed'
fi
go version
}
installGo
function installRedis() {
local installFlag=$(getProperty $appConf redis)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install redis"
return
fi
local redisRoot=`getProperty $appConf redisRoot`
# redisRoot=${redisRoot:-'/usr/local/redis'} # redis root default value
if [ $? -ne 0 ]; then
redisRoot=/usr/local/redis
echoWarn "redisRoot is not set, using defaults: $redisRoot"
else
echoInfo "Config: redisRoot=$redisRoot"
fi
[ ! -d "$redisRoot" ] && echo "creating dir: $redisRoot" && mkdir -p "$redisRoot"
if ! isCmdExist "$redisRoot/bin/redis-server"; then
redisVersion=`getProperty $appConf redisVersion`
if [ $? -ne 0 ]; then
redisVersion=4.0.11
echoWarn "redisVersion is not set, using defaults: $redisVersion"
else
echoInfo "Config: redisVersion=$redisVersion"
fi
redisSrcDir="redis-$redisVersion"
redisBall="$redisSrcDir.tar.gz"
# [ ! -f "$softDir/redis-$redisVersion.tar.gz" ] \
echoInfo "downloading redis-$redisVersion.tar.gz"
wget -O "$softDir/$redisBall" -c "http://download.redis.io/releases/$redisBall"
[ $? -ne 0 ] && echo "download $redisBall failed" && failedAppLog "download $redisBall" && exit 1
cd "$softDir"
tar -zxf "$redisBall"
cd "$redisSrcDir"
make && cd src && make install PREFIX="$redisRoot"
[ $? -ne 0 ] && echoError 'make redis failed' && failedAppLog "make redis" && exit 1
[ ! -d "$redisRoot/conf" ] && echo "mkdir $redisRoot/conf" && mkdir "$redisRoot/conf"
cp ../redis.conf "$redisRoot/conf"
echo 'make soft link for redis commands in /usr/local/bin'
for i in `ls $redisRoot/bin`; do
ln -s "$redisRoot/bin/$i" "/usr/local/bin/$i"
done
echoInfo 'install redis success'
cd $startDir
else
echoInfo "redis was already installed"
fi
"$redisRoot"/bin/redis-server -v
}
installRedis
function installDocker() {
local installFlag=$(getProperty $appConf docker)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install docker"
return
fi
if ! isCmdExist docker; then
echoInfo 'installing docker'
rpm -Uvh http://ftp.riken.jp/Linux/fedora/epel/6Server/x86_64/epel-release-6-8.noarch.rpm
yum install -y docker-io
[ $? -ne 0 ] && echoError 'install docker failed' && failedAppLog "install docker" && exit 1
local dockerStartOnBoot=$(getProperty $appConf dockerStartOnBoot)
[ "$dockerStartOnBoot" == "1" ] && echo "Config: dockerStartOnBoot=1" && chkconfig docker on && chkconfig --list
else
echoInfo 'docker was already installed, version:'
docker version && echo
fi
return $?
}
installDocker
function installNginx() {
local installFlag=$(getProperty $appConf nginx)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install nginx"
return
fi
local nginxVersion=`getProperty $appConf nginxVersion 1.14.1`
local nginxRoot=`getProperty $appConf nginxRoot /usr/local/nginx`
local nginxBall="nginx-$nginxVersion.tar.gz"
if [ -x $nginxRoot/sbin/nginx ]; then
echoInfo 'nginx was already installed'
$nginxRoot/sbin/nginx -v
return 0
fi
echoInfo "installing nginx"
wget -O "$softDir/$nginxBall" -c "http://nginx.org/download/$nginxBall"
cd "$softDir"
tar -zxf $nginxBall
local pcreBall="pcre-8.42.tar.gz"
wget -O "$softDir/$pcreBall" -c "https://ftp.pcre.org/pub/pcre/$pcreBall" \
&& tar -zxf "$pcreBall" \
|| { echoError "doanload $pcreBall failed" && failedAppLog "download $pcreBall"; }
local zlibBall="zlib-1.2.11.tar.gz"
wget -O "$softDir/$zlibBall" -c "http://zlib.net/$zlibBall" \
&& tar -zxf "$zlibBall" \
|| { echoError "doanload $zlibBall failed" && failedAppLog "download $zlibBall"; }
cd "$softDir/nginx-$nginxVersion"
./configure --prefix=$nginxRoot \
--with-pcre=$softDir/pcre-8.42 \
--with-zlib=$softDir/zlib-1.2.11
make && make install
[ $? -ne 0 ] && echoError "install nginx failed" && failedAppLog "install nginx" && exit 1
echoInfo "install nginx success"
$nginxRoot/sbin/nginx -v
cd $startDir
return 0
}
installNginx
function installMysql() {
local installFlag=$(getProperty $appConf mysql)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install mysql"
return
fi
if isCmdExist mysql; then
echoInfo "mysql was already installed"
return 0
fi
yum remove -y mariadb* # for centos7
ps -ef | grep mysql | grep -v grep
if [ $? -eq 0 ]; then
echoInfo "mysql is running..."
return 0
fi
local mysqlServerBall='MySQL-server-5.5.62-1.el6.x86_64.rpm'
local mysqlClientBall='MySQL-client-5.5.62-1.el6.x86_64.rpm'
wget -O "$softDir/$mysqlServerBall" -c "https://dev.mysql.com/get/Downloads/MySQL-5.5/$mysqlServerBall" \
|| { echoInfo "download $mysqlServerBall failed" && failedAppLog "download $mysqlServerBall" && exit 1; }
wget -O "$softDir/$mysqlClientBall" -c "https://dev.mysql.com/get/Downloads/MySQL-5.5/$mysqlClientBall" \
|| { echoInfo "download $mysqlClientBall failed" && failedAppLog "download $mysqlClientBall" && exit 1; }
yum remove -y mysql*
cd $softDir
if rpm -qa | grep MySQL-server; then
echo 'mysql server was already installed'
else
echoInfo "installing mysql server"
yum -y localinstall $mysqlServerBall
[ $? -ne 0 ] && echoError "install mysql server failed" \
&& failedAppLog "install mysql server" && exit 1
fi
if rpm -qa | grep -q MySQL-client; then
echo 'mysql client was already installed'
else
echoInfo "installing mysql client"
yum -y localinstall $mysqlClientBall
[ $? -ne 0 ] && echoError "install mysql client failed" \
&& failedAppLog "install mysql client" && exit 1
fi
echoInfo "install mysql success"
cd $startDir
local mysqlPassword=`getProperty $appConf mysqlPassword`
echoInfo "set mysql password"
service mysql restart && mysqladmin -uroot password $mysqlPassword
[ $? -eq 0 ] && echoInfo "set mysql password success" || echo "set mysql password failed!"
}
installMysql
function installNodejs() {
local installFlag=$(getProperty $appConf nodejs)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install nodejs"
return
fi
local nodejsVersion=$(getProperty $appConf nodejsVersion)
local nodejsRoot=$(getProperty $appConf nodejsRoot)
if isCmdExist node; then
echoInfo "nodejs was already installed, version: `node -v`"
return 0
fi
local nodejsBall="node-v$nodejsVersion-linux-x64.tar.xz"
wget -O "$softDir/$nodejsBall" -c "https://nodejs.org/dist/v$nodejsVersion/$nodejsBall" \
|| { echoError "download $nodejsBall failed" \
&& failedAppLog "download $nodejsBall" && exit 1; }
cd $softDir && tar -xJf $nodejsBall
test -d $nodejsRoot || mkdir $nodejsRoot
cp -rfu "node-v$nodejsVersion-linux-x64"/* $nodejsRoot
# mv "$softDir/node-v$nodejsVersion-linux-x64" $nodejsRoot
# create symbol link for nodejs relative command: node npm etc.
for i in `ls $nodejsRoot/bin`; do
test -x "$nodejsRoot/bin/$i" && ln -sf "$nodejsRoot/bin/$i" "/usr/local/bin/$i"
done
echoInfo "install nodejs success"
node -v
cd $startDir
}
installNodejs
function installMongodb() {
local soft=mongodb
local installFlag=$(getProperty $appConf $soft)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install $soft"
return
fi
local mongodbVersion=$(getProperty $appConf mongodbVersion)
local mongodbRoot=$(getProperty $appConf mongodbRoot)
local mongodbDataDir=$(getProperty $appConf mongodbDataDir)
local mainCmd=`selectCmd mongo "$mongodbRoot/bin/mongo"`
if [ -n "$mainCmd" ]; then
echo "$soft was already installed"
return 0
fi
local softBall="mongodb-linux-x86_64-$mongodbVersion.tgz"
wget -O "$softDir/$softBall" -c "https://fastdl.mongodb.org/linux/$softBall" \
|| { echo "download $softBall" \
&& failedAppLog "download $softBall" && exit 1; }
cd $softDir && tar -xzf $softBall
mv "mongodb-linux-x86_64-$mongodbVersion" "$mongodbRoot"
# soft link, optional
for i in `ls $mongodbRoot/bin`; do
test -x "$mongodbRoot/bin/$i" && ln -sf "$mongodbRoot/bin/$i" "/usr/local/bin/$i"
done
if ps -ef | grep -q mongo | grep -v grep; then
echo "$soft is running"
return 0
fi
# --syslog:log will be write to /var/log/message
# --fork daemon mode running
mkdir -p "$mongodbDataDir"
sh -c "$mongodbRoot/bin/mongod --dbpath=$mongodbDataDir --syslog --fork"
}
installMongodb
function installVimPlugins() {
local soft=vimPlugins
local installFlag=$(getProperty $appConf $soft)
if [ "$installFlag" != "1" ]; then
echoWarn "you do not wanna install $soft"
return
fi
# sh -c "$startDir/public/vim_bootstrap.sh"
cd $startDir
wget -c -O "$startDir/bootstrap.sh" "https://raw.githubusercontent.com/GerryLon/spf13-vim/gerrylon_dev/bootstrap.sh" \
|| { echo "download vim_bootstrap.sh failed" \
&& failedAppLog "download vim_bootstrap.sh" && exit 1; }
chmod u+x "$startDir/bootstrap.sh"
$startDir/bootstrap.sh
cd $startDir
}
installVimPlugins
function startServicesOnBoot() {
local startOnBoot=`getProperty $appConf startServicesOnBoot`
if [ "$startOnBoot" != '1' ]; then
echoWarn 'startServicesOnBoot disabled'
return 1
fi
grep -q "$scriptDir/start_services.sh" /etc/rc.local
if [ $? -ne 0 ]; then
echo "[ -x $scriptDir/start_services.sh ] && $scriptDir/start_services.sh || echo \"start_services failed at \`date +'%Y-%m-%d %H:%M.%S'\`\" >> /var/log/start_services.log" >> /etc/rc.local
fi
}
startServicesOnBoot
| true |
0267a1e1c3067288971fd4d1aba5e23bb6e1f0f4 | Shell | polyvertex/git-tools | /git-backtag | UTF-8 | 660 | 3.984375 | 4 | [] | no_license | #!/usr/bin/env bash
#
# git-backtag
# Jean-Charles Lefebvre <polyvertex@gmail.com>
#
# Tag an existing commit using commit's date and time.
#
source "$(dirname "$(echo "$0" | sed -e 's,\\,/,g')")/gib"
TAG_NAME="$1"
COMMIT="$2"
MESSAGE="$3"
[ -z "$MESSAGE" ] && MESSAGE="$TAG_NAME"
[ -z "$COMMIT" -o -z "$TAG_NAME" ] \
&& gib_die "usage: $0 {new_tag} {commit} [message]"
GIT_COMMITTER_DATE="$(git log -n 1 --no-color --pretty="format:%ci" "$COMMIT")"
[ $? -eq 0 ] || gib_die "Commit not found: $COMMIT"
export GIT_COMMITTER_DATE
git tag -a -m "$MESSAGE" "$TAG_NAME" "$COMMIT"
code=$?
unset GIT_COMMITTER_DATE
[ $code -eq 0 ] || gib_die "Failed to create annotated tag: $TAG_NAME"
| true |
587f39493453759dd8f158c36b114a1c6a13ff44 | Shell | codemation/ec2-health-check | /gen-service.sh | UTF-8 | 620 | 3.015625 | 3 | [] | no_license | #!/bin/bash
echo '#!/bin/bash' > /usr/local/bin/ec2-healthz
echo $(which python3)' '$(pwd)"/ec2-health-check/webapp/server.py" >> /usr/local/bin/ec2-healthz
chmod +x /usr/local/bin/ec2-healthz
cat <<EOF | sudo tee /etc/systemd/system/ec2-healthcheck.service
[Unit]
Description=ec2-healthcheck
Documentation=https://github.com/codemation/ec2-health-check
[Service]
ExecStart=/usr/local/bin/ec2-healthz
Restart=on-failure
RestartSec=5
[Install]
WantedBy=multi-user.target
EOF
#Start ec2-healthz service
{
sudo systemctl daemon-reload
sudo systemctl enable ec2-healthcheck
sudo systemctl start ec2-healthcheck
} | true |
1ba76d0cc6429c3fd36f31c45e7d50433baff456 | Shell | bell07/bashscripts-switch_gentoo | /checks/version-junkie-update.sh | UTF-8 | 1,156 | 3.765625 | 4 | [] | no_license | #!/bin/sh
I=/tmp/ebuild.installed
C=/tmp/ebuild.portage
cleanup () {
sed 's/ *#.*//g' $1 | \
grep -v $1 \
-e "^$" \
-e 'KEYWORDS=' \
-e 'HOMEPAGE=' \
-e 'LICENSE=' \
-e 'SRC_URI=' \
-e 'eerror' \
-e 'einfo' \
-e 'ewarn' \
-e 'elog'
}
cd /var/db/pkg/ || exit 1
find . -mindepth 3 -type f -name '*.ebuild' |\
sort |\
while read FILE
do
EBUILD_INSTALLED=$(basename $FILE)
PACKAGE=$(echo $EBUILD_INSTALLED | sed 's/[.]ebuild//g')
CATEGORIE=$(echo $FILE | cut -f2 -d'/')
REPO="$(cat "$(dirname $FILE)/repository")"
REPO_PATH="/var/db/repos/gentoo/$REPO"
EBUILD_PORTAGE=$(ls "$REPO_PATH"/"$CATEGORIE"/$(echo $PACKAGE | cut -f1 -d'-')*/$EBUILD_INSTALLED 2>/dev/null)
[[ -f $EBUILD_PORTAGE ]] || continue
cleanup $FILE > $I
cleanup $EBUILD_PORTAGE > $C
DIFF=$(diff $I $C 2>/dev/null)
if [[ $? -eq 1 ]]; then
if [[ "$1" = "-q" ]]; then
echo "=$CATEGORIE/$EBUILD_INSTALLED" | sed 's/\.ebuild//g'
else
echo -e "$CATEGORIE/$(basename $(dirname $EBUILD_PORTAGE))\t$EBUILD_INSTALLED"
fi
[[ "$1" = "-v" ]] && echo -e "$DIFF\n"
fi
rm $I $C
done
| true |
78a14aa498c2c2fccf8c4ccf8a99de4d4fbf50ca | Shell | 79laowang/Shell_scripts | /increasing-date.sh | UTF-8 | 587 | 3.578125 | 4 | [
"MIT"
] | permissive | #!/usr/bin/env bash
# -*- coding:utf-8 -*-
#-------------------------------------------------------------------------------
# File Name: increasing-date.sh
# Purpose:
#
# Author: Ke Wang
#
# Created: 2019-11-07
# Copyright: (c) Ke Wang 2019
# Licence: <your licence>
#-------------------------------------------------------------------------------
main(){
first=$1
second=$2
while [ "$first" != "$second" ]; do
echo $first
first=$(date -d "-1 days ago ${first}" +%Y%m%d)
done
}
#---------------- Main Program --------------
main "$@"
| true |
1935ba9139e08fddac768752804dcc80076d211c | Shell | notwa/rc | /sh/hex | UTF-8 | 640 | 3.46875 | 3 | [] | no_license | #!/usr/bin/env zsh
# YES_ZSH
# YES_BASH
# YES_DASH
# YES_ASH
# though technically compatible with other shells,
# extra functionality is through zsh's extended arithmetic functions.
hex() { ### @-
### perform arithmetic using the shell and display the result as
### an unsigned 32-bit integer in hexadecimal.
### see also [`arith`](#arith) and [`bin`](#bin).
###
### ```
### $ hex 0x221EA8-0x212020
### 0000FE88
### ```
###
### **NOTE:** there also exists a hex(1) program provided by
### the *basez* package that i don't use.
printf "%08X\n" "$(($@))"
}
[ -n "${preload+-}" ] || hex "$@"
| true |
ac3b0aa05a58af038f623d1294cfcfa4e4ef59ad | Shell | adambirse/kafka-consumer | /deploy.sh | UTF-8 | 1,332 | 3.3125 | 3 | [
"MIT"
] | permissive | #!/bin/bash
set -e
extract_secrets() {
echo $GCLOUD_SERVICE_KEY | base64 --decode -i > ${HOME}/gcloud-service-key.json
gcloud auth activate-service-account --key-file ${HOME}/gcloud-service-key.json
}
prepare_yaml() {
cp deployment_template.yml deployment.yml
sed -i.bak "s/_PROJECT_NAME_/$PROJECT_NAME/g" deployment.yml
sed -i.bak "s/_DOCKER_IMAGE_NAME_/$DOCKER_IMAGE_NAME/g" deployment.yml
sed -i.bak "s/_TRAVIS_COMMIT_/$TRAVIS_COMMIT/g" deployment.yml
}
prepare_cloud() {
gcloud --quiet config set project $PROJECT_NAME
gcloud --quiet config set container/cluster $CLUSTER_NAME
gcloud --quiet config set compute/zone ${CLOUDSDK_COMPUTE_ZONE}
gcloud --quiet container clusters get-credentials $CLUSTER_NAME
}
build_and_push() {
cd $TRAVIS_BUILD_DIR/docker/build_context
docker build -t gcr.io/${PROJECT_NAME}/${DOCKER_IMAGE_NAME}:$TRAVIS_COMMIT .
cd $TRAVIS_BUILD_DIR
cd build/
gcloud docker -- push gcr.io/${PROJECT_NAME}/${DOCKER_IMAGE_NAME}
cd $TRAVIS_BUILD_DIR
yes | gcloud beta container images add-tag gcr.io/${PROJECT_NAME}/${DOCKER_IMAGE_NAME}:$TRAVIS_COMMIT gcr.io/${PROJECT_NAME}/${DOCKER_IMAGE_NAME}:latest
}
deploy() {
kubectl config view
kubectl config current-context
kubectl apply -f deployment.yml
kubectl apply -f service.yml
}
extract_secrets
prepare_yaml
prepare_cloud
build_and_push
deploy
| true |
346c961e4383d8ad14314f4a4c8c1e6f61c64326 | Shell | bu-rcs/examples | /r/examples/par_domc/rjob | UTF-8 | 311 | 2.578125 | 3 | [] | no_license | #!/bin/bash -l
#Request 8 cores
#$ -pe omp 8
#
#Join output and error stream
#$ -j y
#
#Name your job
#$ -N doMC
#
#
# after we requested 8 slots with omp 8 option,
# the variable NSLOTS is set to 8 and we can use it to pass the number
# of cores to the R script
#
module load R/3.2.3
Rscript domc.R $NSLOTS
| true |
129fb4bab4adad7f02b997d636b3969319fc9051 | Shell | blueyed/dotfiles | /usr/bin/mv-and-link-back | UTF-8 | 1,473 | 4.15625 | 4 | [
"MIT"
] | permissive | #!/usr/bin/zsh
if [[ $# -lt 2 ]]; then
echo "Usage: mv-and-link-back <source>... <target>"
exit 1
fi
target=$argv[$#]
sources=($argv[1,-2])
remove_trailing_slashes() {
a=$1
while [[ $a =~ '/$' ]]; do
a=${a%/}
done
echo $a
}
relpath() {
python -c "import os.path; print os.path.relpath('$1','${2:-$PWD}')"
}
# Remove trailing slashes from target
target=$(remove_trailing_slashes $target)
# target has to be a directory when having multiple sources
if [[ $#sources > 1 ]]; then
if ! [[ -d $target ]]; then
echo "Error: target is not a directory. But there are multiple sources."
exit 1
fi
fi
for source in $sources; do
if [[ -L $source ]]; then
echo "Warning: source is a symbolic link already, skipping: $source"
continue
fi
source_resolved=$(readlink -f $source) # resolve e.g. "." and ".."
[[ -n $source_resolved ]] && source=$source_resolved
source=$(remove_trailing_slashes $source) # this might be necessary when "readlink -f" fails
if [[ -d $target ]] ; then
mv_to=$target/$source:t
else
mv_to=$target
fi
if [[ -e $mv_to ]] ; then
echo "Error: target already exists: $mv_to"
exit 2
fi
# if [[ $source -ef $mv_to ]]; then
# echo "Error: source and target are the same file already"
# exit 1
# fi
# move:
cmd=(mv $source $mv_to)
echo "DEBUG: $cmd"
$cmd
# link:
link_to=$(relpath $mv_to $source:h)
cmd=(ln -s $link_to $source)
echo "DEBUG: $cmd"
$cmd
done
| true |
7bc8c6906d3f8acfaccc93d6276cf3635ffa4ea3 | Shell | soimort/dotfiles | /Scripts/arch | UTF-8 | 894 | 3.953125 | 4 | [
"LicenseRef-scancode-warranty-disclaimer"
] | no_license | #!/bin/sh
ARCH=x86_64
exec_install() {
for package_name in "$@"; do
status=`curl -sI https://www.archlinux.org/packages/extra/$ARCH/$package_name/ | head -n 1 | cut -d$' ' -f2`
if [ $status = 200 ]; then
git_repo=packages
else
status=`curl -sI https://www.archlinux.org/packages/community/$ARCH/$package_name/ | head -n 1 | cut -d$' ' -f2`
if [ $status = 200 ]; then
git_repo=community
fi
fi
mkdir $package_name
cd $package_name
git init
git remote add -t packages/$package_name -f origin git://projects.archlinux.org/svntogit/$git_repo.git
git checkout packages/$package_name
cd trunk
makepkg
done
}
if [ $# -eq 0 ]; then
echo arch
exit
fi
case $1 in
'install' )
shift
exec_install $*
;;
esac
| true |
730070aef5f0849c323ca375c63305caa4ddf0a1 | Shell | yueng-amaiwa/javascript_examples | /juan/data_types/docker_build.sh | UTF-8 | 1,015 | 3.875 | 4 | [] | no_license | #! /bin/bash
#
# docker_build.sh
# Copyright (C) 2021 juanwilches <juanwilches@VPN-159-23.vpn.usf.edu>
#
# Distributed under terms of the MIT license.
#
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
#1. Create url.txt file in the home folder (host)
#2. Copy url.txt to docker building context (next Dockerfile)
#3. Build docker image (copying url.txt in home folder in container' filesystem)
#4. echo url.txt
#5 delete url.txt from home and from docker building context (next Dockerfile)
echo "Begin copying file..."
if [ ! -f $HOME/url.txt ]
then
echo http://www.amaiwa.com/ > $HOME/url.txt
cp $HOME/url.txt $DIR
fi
echo "End copying file..."
echo "Begin build image..."
docker build -f Dockerfile -t ubuntu-chrome-js $DIR
echo "End build image..."
echo "Show contents of url.txt"
if [ -f $DIR/url.txt ]
then
cat $DIR/url.txt
fi
echo "Begin deleting files..."
if [ -f $HOME/url.txt ]
then
rm $HOME/url.txt
fi
if [ -f $DIR/url.txt ]
then
rm $DIR/url.txt
fi
echo "End deleting files..."
| true |
f56cb49df67788bcf21b035cc5d453d2c942cc6f | Shell | NoUseFreak/wait-for-it | /scripts/get.sh | UTF-8 | 613 | 3.59375 | 4 | [
"MIT"
] | permissive | #!/usr/bin/env bash
# Usage: curl https://raw.githubusercontent.com/NoUseFreak/wait-for-it/master/scripts/get.sh | bash
get_latest_release() {
curl --silent "https://api.github.com/repos/NoUseFreak/wait-for-it/releases/latest" |
grep '"tag_name":' |
sed -E 's/.*"([^"]+)".*/\1/'
}
download() {
curl -Ls -o /usr/local/bin/wait-for-it https://github.com/NoUseFreak/wait-for-it/releases/download/$1/`uname`_wait-for-it
}
echo "Looking up latest release"
RELEASE=$(get_latest_release)
echo "Downloading package"
$(download $RELEASE)
echo "Making executable"
sudo chmod +x /usr/local/bin/wait-for-it
| true |
fd6ed8ea09665e3e709d23070d6a44a9eba3ae4f | Shell | manolonte/POP | /usr_local_bin/pop_init.sh | UTF-8 | 1,524 | 3.203125 | 3 | [] | no_license | #!/bin/sh
set -x
# Kernel 4.3
# 408 - LED
# 409 - S1 - posición abajo
# 410 - S2 - posición arriba
# 411 - B1 ROJO -> RESET/SHUTDOWN
# 412 - B2 NEGRO
echo 408 > /sys/class/gpio/export
echo out > /sys/class/gpio/gpio408/direction
echo 1 > /sys/class/gpio/gpio408/value
echo 409 > /sys/class/gpio/export
echo in > /sys/class/gpio/gpio409/direction
echo 410 > /sys/class/gpio/export
echo in > /sys/class/gpio/gpio409/direction
echo 411 > /sys/class/gpio/export
echo in > /sys/class/gpio/gpio409/direction
echo 412 > /sys/class/gpio/export
echo in > /sys/class/gpio/gpio409/direction
v409=`cat /sys/class/gpio/gpio409/value`
v410=`cat /sys/class/gpio/gpio410/value`
echo $v409
echo $v410
# 408=1 409=0 -> Mantenimiento, switch abajo
# 408=1 409=1 -> Switch enmedio
# 408=0 409=1 -> Switch arriba
if [ "$v409" -eq 1 ] && [ "$v410" -eq 0 ]
then
mode=mnt
elif [ "$v409" -eq 1 ] && [ "$v410" -eq 1 ]
then
mode=p2
elif [ "$v409" -eq 0 ] && [ "$v410" -eq 1 ]
then
mode=p1
fi
echo $mode
if [ "$mode" != "mnt" ]
then
echo "iface wlan0 inet manual" > /etc/network/interfaces
else
:> /etc/network/interfaces
fi
/usr/local/bin/pop_loop.sh $mode &
if [ "$mode" = "p1" ]
then
pop_script="pop_p1.sh"
fi
if [ "$mode" = "p2" ]
then
pop_script="pop_p2.sh"
fi
if [ "$mode" = "mnt" ]
then
pop_script="pop_mnt.sh"
fi
date >> /var/log/pop.log
echo 1 > /sys/class/gpio/gpio408/value
chmod 777 /sys/class/gpio/gpio408/value
/sbin/runuser -l chip /home/chip/${pop_script} >> /var/log/pop.log 2>&1 &
| true |
34992b748c859bca016f2ec64033048c4a4e2750 | Shell | arabine/grenier | /Bash/moulinette.sh | MacCentralEurope | 886 | 3.578125 | 4 | [] | no_license | #!/bin/bash
root_file="/cygdrive/z/Root"
search () {
for dir in `echo *`
# ==> `echo *` lists all the files in current working directory,
#+ ==> without line breaks.
# ==> Similar effect to for dir in *
# ==> but "dir in `echo *`" will not handle filenames with blanks.
do
if [ -d "$dir" ] ; then # ==> If it is a directory (-d)...
if [ "$dir" == "CVS" ] ; then
cp $root_file $dir
echo "$dir --> fichier copi"
fi
if cd "$dir" ; then # ==> If can move to subdirectory...
search `expr $1 + 1` # with recursion ;-)
# ==> Function calls itself.
cd ..
fi
fi
done
}
if [ $# != 0 ] ; then
cd $1 # move to indicated directory.
#else # stay in current directory
fi
echo "Initial directory = `pwd`"
search 0
exit 0
| true |
e7a0151be63dfd44263dd72b99a8757c8a8223d9 | Shell | dominicmcginnis/scripts | /serverCheck.sh | UTF-8 | 15,870 | 3.53125 | 4 | [] | no_license | #!/bin/bash
# Configure defaults
export environment="INT"
export appToTest="TPO"
export baseOsbUrl="https://my.osb.url.com/v2"
export siteUrl="http://my.app.url/tpo"
export jenkinslink=""
export credentials="{ Password: 'foobar', Realm: '1234BFG', SiteURL: 'https://my.site.com', UserName: 'my.user@user.com'}"
export REALM="BE11158783"
validStatus=["200","201","300","301"]
serviceDown="false"
sessionId=""
statusOutLog=""
#Setup input options
while test $# -gt 0; do
case "$1" in
-h|--help)
echo "Script for executing service checks"
echo " "
echo "Usage of the script looks like the following:"
echo " serverCheck.sh -e <env> -a <app> -ou <osbUrl> -au <appUrl> -j <jenkinsJobUrl>"
echo " "
echo "options:"
echo "-h, --help show brief help"
echo "-e, --env=ENVIRONMENT Specify Environment running against, mainly used in reporting. (Default: INT)"
echo "-a, --app=APPLICATION Specify Application running against, mainly used in reporting. (Default: TPO"
echo "-ou, --osbUrl=URL Specify URL for OSB service. (Default: https://my.osb.url.com/v2)"
echo "-au, --appUrl=URL Specify Application URL. (Default: http://my.app.url/tpo)"
echo "-j, --jenkins=JENKINS_JOB_LINK Specify the link back to the jenkins job. (Default: empty)"
echo "-c, --credentials Credentials used for the check{ Password: '', Realm: '', SiteURL: '', UserName: ''}"
echo "-r, --realm Realm used for the Directory Services check"
exit 0
;;
-e)
shift
if test $# -gt 0; then
export environment=$1
else
echo "no env specified"
exit 1
fi
shift
;;
--env*)
export environment=`echo $1 | sed -e 's/^[^=]*=//g'`
shift
;;
-a)
shift
if test $# -gt 0; then
export appToTest=$1
else
echo "no app specified"
exit 1
fi
shift
;;
--app*)
export appToTest=`echo $1 | sed -e 's/^[^=]*=//g'`
shift
;;
-ou)
shift
if test $# -gt 0; then
export baseOsbUrl=$1
else
echo "no osb url specified"
exit 1
fi
shift
;;
--baseOsbUrl*)
export baseOsbUrl=`echo $1 | sed -e 's/^[^=]*=//g'`
shift
;;
-au)
shift
if test $# -gt 0; then
export siteUrl=$1
else
echo "no app URL specified"
exit 1
fi
shift
;;
--appUrl*)
export siteUrl=`echo $1 | sed -e 's/^[^=]*=//g'`
shift
;;
-j)
shift
if test $# -gt 0; then
export jenkinslink=$1
else
echo "no jenkins link specified"
exit 1
fi
shift
;;
--jenkins*)
export jenkinslink=`echo $1 | sed -e 's/^[^=]*=//g'`
shift
;;
-c)
shift
if test $# -gt 0; then
export credentials=$1
else
echo "no credentials specified"
exit 1
fi
shift
;;
--credentials*)
export credentials=`echo $1 | sed -e 's/^[^=]*=//g'`
shift
;;
-r)
shift
if test $# -gt 0; then
export REALM=$1
else
echo "no realm specified"
exit 1
fi
shift
;;
--realm*)
export REALM=`echo $1 | sed -e 's/^[^=]*=//g'`
shift
;;
*)
break
;;
esac
done
# Every config must have a getSessionId in order to establish a session for executing APIs
# Take special note of the JSON in the data arrays, it is not a standard format given the parsing
# engine is python, the way the Key/Val/{}/[] are quoted must be enforced.
export jsonConfig=$(< <(cat <<EOF
{
"getSessionId" : {
"name" : "Create Session",
"url" : "${baseOsbUrl}/auth/temp/sessions/",
"data" : "${credentials}",
"headers" : [],
"method" : "POST",
"jsonResponsePath" : "('TPOLoginResponse' 'SecurityContext' 'SessionId')"
},
"OSBLoginCheck" : {
"name" : "Login Service (deprecated soon)",
"url" : "${baseOsbUrl}/auth/temp/sessions/",
"data" : "${credentials}",
"headers" : [],
"method" : "POST",
"jsonResponsePath" : ""
},
"TPOSiteCheck" : {
"name" : "TPO Site",
"url" : "${siteUrl}",
"data" : "",
"headers" : [],
"method" : "GET",
"jsonResponsePath" : ""
},
"MediaSvcs_IdentitySvcsCheck" : {
"name" : "Media_Identity Srvcs",
"url" : "${baseOsbUrl}/mediaserver",
"data" : "",
"headers" : ["OperationName:SaveFile", "TokenCreator:encompass", "TokenExpiration:1484384"],
"method" : "GET",
"jsonResponsePath" : ""
},
"getOSBTPOSessionId" : {
"name" : "Create Session",
"url" : "${baseOsbUrl}/auth/sessions/",
"data" : "${credentials}",
"headers" : [],
"method" : "POST",
"jsonResponsePath" : ""
},
"OSBDirectoryServiceCheck" : {
"name" : "Directory Service",
"url" : "${baseOsbUrl}/directory/host?InstanceID=${REALM}",
"data" : "",
"headers" : [],
"method" : "GET",
"jsonResponsePath" : ""
},
"PipelineServicecheck" : {
"name" : "Pipeline Service",
"url" : "${baseOsbUrl}/loan/pipeline/cursors",
"data" : "{ }",
"headers" : [],
"method" : "POST",
"jsonResponsePath" : ""
},
"EVP_User_Setting_Check" : {
"name" : "EVP User Setting API",
"url" : "${baseOsbUrl}/vendor/transactions",
"data" : "{ KEY: 'value', KEY2: 'value2' }",
"headers" : [],
"method" : "POST",
"jsonResponsePath" : ""
},
"EVP_Pricing_Check" : {
"name" : "EVP Pricing API",
"url" : "${baseOsbUrl}/vendor/transactions",
"data" : "{ KEY: 'value', KEY2: [{ key: 'val', key: 'val'}], KEY3: { key: 'val' }}",
"headers" : [],
"method" : "POST",
"jsonResponsePath" : ""
}
}
EOF
))
export chatConfig=$(< <(cat <<EOF
{
"INT": {
"room": "ROOM_ID",
"authToken": "AUTH_TOKEN"
},
"PEGL": {
"room": "ROOM_ID",
"authToken": "AUTH_TOKEN"
}
}
EOF
))
log() {
echo -e $1 >&2
}
# Use python to parse our Json Config string based on the check and it's key
parseJsonConfig() {
export check=$1
export checkKey=$2
local value=$(echo ${jsonConfig} | python -c 'import os, sys, json; mycheck = os.getenv("check"); mycheckKey = os.getenv("checkKey"); print json.load(sys.stdin)[mycheck][mycheckKey]')
echo "${value}"
}
# Use python to parse our Chat Config string based on the environment and it's key
parseChatConfig() {
export envName=$1
export envKey=$2
local value=$(echo ${chatConfig} | python -c 'import os, sys, json; myenvName = os.getenv("envName"); myenvKey = os.getenv("envKey"); print json.load(sys.stdin)[myenvName][myenvKey]')
echo "${value}"
}
# Utilize an array to walk the required JSON path to get the value to return from the response
# Using python for the json parsing
getJsonResponseValue() {
export myJsonVal=$1
declare -a getResponseValJsonPath=$2
for i in "${getResponseValJsonPath[@]}"; do
export key=$i
export myJsonVal=$(echo ${myJsonVal} | python -c 'import os, sys, json; myKey = os.getenv("key"); print json.dumps(json.load(sys.stdin)[myKey])')
done
echo ${myJsonVal}
}
# Execute the health check
runHealthCheck() {
local check=$1
# Establish all of the curl params from the check config json object
local url=$(parseJsonConfig ${check} "url")
local method=$(parseJsonConfig ${check} "method")
local dataArgs=$(parseJsonConfig ${check} "data")
local headers="$(parseJsonConfig ${check} "headers")"
local getResponseValJsonPath=$(parseJsonConfig ${check} "jsonResponsePath")
local getHttpCode=""
local curlCommand="curl --connect-timeout 30 --max-time 60 -s -X ${method}"
# Ignore the response body, just capture the HTTP CODE
if [[ "${getResponseValJsonPath}" == "" ]]; then
getHttpCode="-i -o /dev/null -w %{http_code}"
fi
if [[ "${headers}" == "[]" ]]; then
headers=$(echo -e -H 'Content-Type:application/json' -H 'elli-session:'${sessionId} | perl -pe 's/"//g')
else
# The perl script here attempts to format the python "dict" value from the json object into bash friendly stirngs for CURL
headers=$(echo -e -H 'Content-Type:application/json' -H 'elli-session:'${sessionId} -H ${headers} | perl -pe 's/\[u//; s/\]//; s/, u/ -H /g; s/'\''//g; s/ -H / -H /g; s/: /:/g; s/"//g')
fi
# execute the curl command capturing the response
local response=""
if [[ "${dataArgs}" == "" ]]; then
curlCommand=$(echo -e ${curlCommand} ${getHttpCode} ${headers} \"${url}\")
log "Executing curl command: ${curlCommand}"
response=$(curl --connect-timeout 30 --max-time 60 -s -X ${method} ${getHttpCode} ${headers} "${url}")
else
curlCommand=$(echo -e ${curlCommand} ${getHttpCode} ${headers} \"${url}\" -d \"${dataArgs}\")
log "Executing curl command: ${curlCommand}"
response=$(curl --connect-timeout 30 --max-time 60 -s -X ${method} ${getHttpCode} ${headers} "${url}" -d "${dataArgs}")
fi
# If our response is not being ignored, then we need to parse it for our value
if [[ ! "${getResponseValJsonPath}" == "" ]]; then
response=$(getJsonResponseValue ${response} "${getResponseValJsonPath}")
fi
# echo out the response value or http code for capture
echo ${response}
# Return an exit code indicating check pass/fail
if [[ "${getResponseValJsonPath}" == "" ]]; then
local valid=0
if [[ "${validStatus[@]}" =~ "${response}" ]]; then
valid=1
fi
return ${valid}
fi
}
## Begin Execute Checks
executeChecks() {
# Get the checks to execute as an arry (the perl command will format the python dict json value into a bash array variable)
declare -a checks=$(echo ${jsonConfig} | python -c 'import sys, json; print json.load(sys.stdin).keys()' | perl -pe 's/\[u/(/; s/\]/)/; s/, u/ /g')
log "Getting SessionId..."
# Get a valid session
export sessionId=$(runHealthCheck "getSessionId")
if [[ "${sessionId}" == "" ]]; then
log "Get session failed!"
serviceDown="true"
fi
# Get the count of checks, not including getSessionId to be used in the TAP results
checkTotal=`expr ${#checks[@]} - 1`
$(echo "1..${checkTotal}" > serviceChecks.tap)
# Loop through the checks building our TAP results and Console Output strings
outputLog=""
count=0
for i in "${checks[@]}"; do
export check=$i
if [[ ! "${check}" == "getSessionId" ]]; then
count=`expr ${count} + 1`
log "Running check: ${check}..."
local checkName=$(parseJsonConfig ${check} "name")
checkReturnVal=$(runHealthCheck "${check}")
if [[ $? -eq 0 ]]; then
log "${check} failed!"
serviceDown="true"
$(echo "${tapResults}not ok ${count} - ${checkName} failed: ${checkReturnVal}" >> serviceChecks.tap)
outputLog="${outputLog}${checkName} response code: ${checkReturnVal} \n"
else
log "${check} passed."
$(echo "${tapResults}ok ${count} - ${checkName} passed: ${checkReturnVal}" >> serviceChecks.tap)
fi
statusOutLog="${statusOutLog}${checkName} response code: ${checkReturnVal} \n"
fi
done
echo ${outputLog}
if [[ "${serviceDown}" == "true" ]]; then
return 0
else
return 1
fi
}
# Send out email notifications
sendEmailNotification() {
local output=$1
mail -s "A Service for ${appToTest} on ${environment} is down" foo.bar@company.com <<< ${output}
}
sendHipChatNotification() {
local MESSAGE=$1
local ROOM_ID=$(parseChatConfig ${environment} "room")
local AUTH_TOKEN=$(parseChatConfig ${environment} "authToken")
local dataArgs=$(echo -e "{\"color\": \"red\", \"message_format\": \"text\", \"message\": \"${MESSAGE}\"}")
log "Sending ServiceChecks hipchat notification..."
log 'curl --connect-timeout 30 --max-time 60 -s -H "Content-Type: application/json" \
-X POST \
-d' "${dataArgs}"' \
https://api.hipchat.com/v2/room/2704310/notification?auth_token=ig5J9PFybM0C9TgRa8hxRh2Q6ASt5t1aly19JRD9
'
#Send to ServiceChecks room
curl --connect-timeout 30 --max-time 60 -s -H "Content-Type: application/json" \
-X POST \
-d "${dataArgs}" \
https://api.hipchat.com/v2/room/2704310/notification?auth_token=Z1z8slcRlKROWOvNxzo9xK5gHLmeKWHlbCF61Ea7
log "Sending ServiceChecks hipchat notification..."
log 'curl --connect-timeout 30 --max-time 60 -s -H "Content-Type: application/json" \
-X POST \
-d' "${dataArgs}"' \
https://api.hipchat.com/v2/room/${ROOM_ID}/notification?auth_token=${AUTH_TOKEN}
'
#Send to AppToTest specified room
curl --connect-timeout 30 --max-time 60 -s -H "Content-Type: application/json" \
-X POST \
-d "${dataArgs}" \
https://api.hipchat.com/v2/room/${ROOM_ID}/notification?auth_token=${AUTH_TOKEN}
}
sendTestHipChatNotification() {
local MESSAGE=$1
local dataArgs=$(echo -e "{\"color\": \"red\", \"message_format\": \"text\", \"message\": \"${MESSAGE}\"}")
log "Sending test hipchat notification..."
log 'curl --connect-timeout 30 --max-time 60 -s -H "Content-Type: application/json" \
-X POST \
-d' "${dataArgs}"' \
https://api.hipchat.com/v2/room/<TEST_ROOM>/notification?auth_token=<AUTH_TOKEN>
'
#Send to Test room
curl --connect-timeout 30 --max-time 60 -s -H "Content-Type: application/json" \
-X POST \
-d "${dataArgs}" \
https://api.hipchat.com/v2/room/<TEST_ROOM>/notification?auth_token=<AUTH_TOKEN>
}
# Run the body of the script
returnVal=0
output=$(executeChecks)
if [[ $? -eq 0 ]]; then
MESSAGE="$(echo -e "@all A Service for ${appToTest} on ${environment} is down! ${output}" | perl -pe "s/ \n/; /g; s/u'//g; s/\r//g; s/\"//g; s/}/ /g; s/{/ /g; ")"
if [[ "${buildNumber}" != "" ]]; then
MESSAGE="${MESSAGE} CheckLink: ${jenkinslink}"
fi
echo -e "${MESSAGE}"
# Disabled as box running on doesn't support "mail"
#sendEmailNotification "${output}"
if [[ "${environment}" == "TEST" ]]; then
sendTestHipChatNotification "${MESSAGE}"
else
sendHipChatNotification "${MESSAGE}"
fi
returnVal=-1
else
log "${statusOutLog}"
fi
exit ${returnVal}
| true |
1c0ea05f7eec21c009142ec899bfb3589f35774c | Shell | denischanc/soaf.sh | /src/module.sh | UTF-8 | 5,612 | 3.109375 | 3 | [] | no_license | ################################################################################
################################################################################
readonly SOAF_MODULE_VERSION_ATTR="soaf_module_version"
readonly SOAF_MODULE_STATIC_FN_ATTR="soaf_module_static_fn"
readonly SOAF_MODULE_CFG_FN_ATTR="soaf_module_cfg_fn"
readonly SOAF_MODULE_INIT_FN_ATTR="soaf_module_init_fn"
readonly SOAF_MODULE_PREPENV_FN_ATTR="soaf_module_prepenv_fn"
readonly SOAF_MODULE_PRE_ACTION_FN_ATTR="soaf_module_pre_action_fn"
readonly SOAF_MODULE_POST_ACTION_FN_ATTR="soaf_module_post_action_fn"
readonly SOAF_MODULE_EXIT_FN_ATTR="soaf_module_exit_fn"
readonly SOAF_MODULE_DEP_LIST_ATTR="soaf_module_dep_list"
readonly SOAF_MODULE_DEP_STATE_ATTR="soaf_module_dep_state"
readonly SOAF_MODULE_DEP_UNKNOWN_S="UNKNOWN"
readonly SOAF_MODULE_DEP_INPROG_S="INPROG"
readonly SOAF_MODULE_DEP_OK_S="OK"
################################################################################
################################################################################
soaf_create_module() {
local NAME=$1
local VERSION=$2
local STATIC_FN=$3
local CFG_FN=$4
local INIT_FN=$5
local PREPENV_FN=$6
local PRE_ACTION_FN=$7
local POST_ACTION_FN=$8
local EXIT_FN=$9
local DEP_LIST=${10}
local POS=${11}
[ "${NAME#soaf.core.}" = "$NAME" ] && POS=
soaf_pmp_list_fill "$POS" SOAF_MODULE_LIST $NAME
soaf_map_extend $NAME $SOAF_MODULE_VERSION_ATTR $VERSION
soaf_map_extend $NAME $SOAF_MODULE_STATIC_FN_ATTR $STATIC_FN
soaf_map_extend $NAME $SOAF_MODULE_CFG_FN_ATTR $CFG_FN
soaf_map_extend $NAME $SOAF_MODULE_INIT_FN_ATTR $INIT_FN
soaf_map_extend $NAME $SOAF_MODULE_PREPENV_FN_ATTR $PREPENV_FN
soaf_map_extend $NAME $SOAF_MODULE_PRE_ACTION_FN_ATTR $PRE_ACTION_FN
soaf_map_extend $NAME $SOAF_MODULE_POST_ACTION_FN_ATTR $POST_ACTION_FN
soaf_map_extend $NAME $SOAF_MODULE_EXIT_FN_ATTR $EXIT_FN
soaf_map_extend $NAME $SOAF_MODULE_DEP_LIST_ATTR "$DEP_LIST"
soaf_map_extend $NAME $SOAF_MODULE_DEP_STATE_ATTR \
$SOAF_MODULE_DEP_UNKNOWN_S
}
################################################################################
################################################################################
soaf_module_resolve_dep_module_() {
local MODULE=$1
local DEP_LIST_MSG=$2
local ERR_MSG=
soaf_list_found "$SOAF_MODULE_LIST_" $MODULE
if [ -z "$SOAF_RET_LIST" ]
then
local ERR_MSG="Module not found : [$MODULE]."
else
DEP_LIST_MSG+=" -> [$MODULE]"
soaf_map_get $MODULE $SOAF_MODULE_DEP_STATE_ATTR
local DEP_STATE=$SOAF_RET
if [ "$DEP_STATE" = "$SOAF_MODULE_DEP_INPROG_S" ]
then
local ERR_MSG="Module dependance deadlock : $DEP_LIST_MSG."
elif [ "$DEP_STATE" != "$SOAF_MODULE_DEP_OK_S" ]
then
soaf_map_extend $MODULE $SOAF_MODULE_DEP_STATE_ATTR \
$SOAF_MODULE_DEP_INPROG_S
soaf_map_get $MODULE $SOAF_MODULE_DEP_LIST_ATTR
local dep_module
for dep_module in $SOAF_RET
do
soaf_module_resolve_dep_module_ $dep_module "$DEP_LIST_MSG"
done
SOAF_MODULE_SORT_LIST+=" $MODULE"
SOAF_MODULE_SORT_R_LIST="$MODULE $SOAF_MODULE_SORT_R_LIST"
soaf_map_extend $MODULE $SOAF_MODULE_DEP_STATE_ATTR \
$SOAF_MODULE_DEP_OK_S
fi
fi
[ -n "$ERR_MSG" ] && soaf_engine_exit_dev "$ERR_MSG"
}
soaf_module_resolve_dep() {
soaf_pmp_list_cat SOAF_MODULE_LIST
SOAF_MODULE_LIST_=$SOAF_RET_LIST
local module
for module in $SOAF_MODULE_LIST_
do
soaf_module_resolve_dep_module_ $module
done
}
################################################################################
################################################################################
soaf_module_version() {
local MODULE_NAME=$1
soaf_console_msg_ctl $MODULE_NAME "$SOAF_THEME_VAL_CTL_LIST"
local TXT="$SOAF_CONSOLE_RET-"
soaf_map_get $MODULE_NAME $SOAF_MODULE_VERSION_ATTR
soaf_console_msg_ctl "$SOAF_RET" "$SOAF_THEME_VER_CTL_LIST"
soaf_dis_txt "$TXT$SOAF_CONSOLE_RET"
}
################################################################################
################################################################################
soaf_module_call_fn_() {
local MODULE_NAME=$1
local FN=$2
local VA_NATURE=$3
if [ -n "$FN" ]
then
if [ -n "$VA_NATURE" ]
then
soaf_varargs_fn_apply $VA_NATURE $FN $MODULE_NAME
else
$FN $MODULE_NAME
fi
fi
}
################################################################################
################################################################################
soaf_module_apply_fn_() {
local MODULE_LIST=$1
local FN=$2
local VA_NATURE=$3
local module
for module in $MODULE_LIST
do
soaf_module_call_fn_ $module $FN $VA_NATURE
done
}
soaf_module_apply_all_fn() {
local FN=$1
local VA_NATURE=$2
soaf_module_apply_fn_ "$SOAF_MODULE_SORT_LIST" $FN $VA_NATURE
}
soaf_module_apply_all_reverse_fn() {
local FN=$1
local VA_NATURE=$2
soaf_module_apply_fn_ "$SOAF_MODULE_SORT_R_LIST" $FN $VA_NATURE
}
################################################################################
################################################################################
soaf_module_apply_fn_attr_() {
local MODULE_LIST=$1
local FN_ATTR=$2
local VA_NATURE=$3
local module
for module in $MODULE_LIST
do
soaf_map_get $module $FN_ATTR
local FN=$SOAF_RET
[ -n "$FN" ] && soaf_module_call_fn_ $module $FN $VA_NATURE
done
}
soaf_module_apply_all_fn_attr() {
local FN_ATTR=$1
local VA_NATURE=$2
soaf_module_apply_fn_attr_ "$SOAF_MODULE_SORT_LIST" $FN_ATTR $VA_NATURE
}
soaf_module_apply_all_reverse_fn_attr() {
local FN_ATTR=$1
local VA_NATURE=$2
soaf_module_apply_fn_attr_ "$SOAF_MODULE_SORT_R_LIST" $FN_ATTR $VA_NATURE
}
| true |
63ae209235801ff594f1228615b009eb78440f11 | Shell | diagprov/retrowrite | /fuzzing/kernel/vms_files/run_qemu_cov.sh | UTF-8 | 571 | 2.609375 | 3 | [
"MIT"
] | permissive | #!/bin/bash
# this script run the syzskaller vms, no needs to start it by hands, it is ran from measure_coverage.sh (via run_cov.expect)
set -euo pipefail
qemu-system-x86_64 \
-kernel "$1/arch/x86/boot/bzImage" \
-append "console=ttyS0 rw debug root=/dev/sda debug earlyprintk=serial slub_debug=QUZ" \
-hda "$2" \
-snapshot \
-virtfs "local,path=$3/input,security_model=none,mount_tag=input,readonly" \
-virtfs "local,path=$3/coverage,security_model=none,mount_tag=output" \
-enable-kvm \
-nographic \
-cpu host \
-m 2G \
-smp 2 \
2>&1 | tee cover_log.txt
| true |
fbdf2061bf54938f4ff901fb01edcc52eb6e0fa5 | Shell | lindleyw/juno | /juno | UTF-8 | 6,025 | 3.828125 | 4 | [
"BSD-3-Clause"
] | permissive | #!/bin/bash
# Copyright (c) 2010-16, Mitchell Cooper
DIR=`dirname "$(cd "${0%/*}" 2>/dev/null; echo "$PWD"/"${0##*/}")"`
showusage() {
cat << EOF
usage: $0 [action]
start start juno IRCd
forcestart attempt to start juno under any circumstances
stop terminate juno IRCd
debug start in NOFORK mode with printed output
forever run continuously
foreverd run continuously in debug mode
rehash rehash the server configuration file
mkpasswd runs the password generator
dev various developer actions ($0 dev help)
help print this information
EOF
}
showdevusage() {
cat << EOF
usage: $0 dev [action]
makemodule create a .module and .pm
pullsubs run git pull for all submodules
runlocal run in debug mode using local submodules
EOF
}
runningq() {
if [ -e "$DIR/etc/juno.pid" ]; then
PID=`cat $DIR/etc/juno.pid`
if kill -0 $PID; then
RUNNING=true
fi
fi
}
splash() {
VER=$(cat VERSION)
echo "
##########################################################################
# _ _ _
# ( ) (_) | |
# _ _ _ _ __ ___ _ _ __ ___ __| |
# | | | | | | | '_ \ / _ \ | | | '__/ / __| / _\` |
# | | | |_| | | | | | | (_) | == | | | | | (__ | (_| |
# | | \__,_| |_| |_| \___/ |_| |_| \___| \__,_|
# _/ |
# |__/ version $VER https://github.com/cooper/juno
#
##########################################################################
"
}
check_if_running() {
if [ ! "$RUNNING" ]; then
echo "juno is not running!"
exit 1
fi
}
dostart() {
echo "Starting juno"
splash
$DIR/bin/ircd $DIR
}
start() {
if [ "$RUNNING" ]; then
echo "juno is already running!"
exit 1
fi
dostart
}
forcestart() {
if [ -e "$DIR/etc/juno.pid" ]; then
rm -v $DIR/etc/juno.pid
fi
dostart
}
debug() {
if [ "$RUNNING" ]; then
echo "juno is already running!"
exit 1
fi
echo "Running in NOFORK mode."
splash
$DIR/bin/ircd $DIR NOFORK & pid=$!
trap ' echo "Signaling $pid TERM"; kill -TERM $pid' INT
wait $pid
}
forever() {
if [ "$RUNNING" ]; then
echo "juno is already running!"
exit 1
fi
splash
$DIR/bin/ircd_forever $DIR & pid=$!
trap ' echo "Signaling $pid TERM"; kill -TERM $pid' INT
wait $pid
}
forever_nofork() {
if [ "$RUNNING" ]; then
echo "juno is already running!"
exit 1
fi
echo "Running in NOFORK mode."
splash
$DIR/bin/ircd_forever $DIR NOFORK & pid=$!
trap ' echo "Signaling $pid TERM"; kill -TERM $pid' INT
wait $pid
}
stop() {
check_if_running
echo "Signaling $PID TERM"
kill -TERM $PID
}
main() {
case "$1" in
start)
start
;;
forever)
forever
;;
foreverd)
forever_nofork
;;
debug)
debug
;;
forcestart)
forcestart
;;
rehash)
check_if_running
echo "Rehashing server"
echo rehash > $DIR/etc/HUP
kill -HUP $PID
;;
stop)
stop
;;
restart)
stop
#sleep .01
forcestart
;;
reset)
rm -v $DIR/etc/juno.pid
;;
mkpasswd)
$DIR/bin/mkpasswd
;;
genssl)
SSLDIR=$DIR/etc/ssl
mkdir -p $SSLDIR
openssl req -x509 -nodes -newkey rsa:2048 -keyout $SSLDIR/key.pem -out $SSLDIR/cert.pem
echo "Use the 'sslport' key in listener configuration blocks"
echo "Enjoy using SSL"
;;
lines)
$DIR/bin/lines
;;
dev)
case "$2" in
pullsubs)
oldpwd=$(pwd)
for MOD in $(ls $DIR/lib)
do
echo "=> Updating $MOD"
cd $DIR/lib/$MOD
git pull -q origin master
cd $oldpwd
done
echo "!!! Don't forget to update dependency versions in ircd.pm"
;;
runlocal)
perl -I$DIR/../evented-object/lib -I$DIR/../evented-configuration/lib \
-I$DIR/../evented-database/lib -I$DIR/../evented-api-engine/lib \
-MEvented::Object -MEvented::Configuration -MEvented::Database \
-MEvented::API::Engine \
$DIR/bin/ircd $DIR NOFORK
;;
commit)
# get commit message
file=$DIR/commit.tmp
editor=${EDITOR:-nano}
$editor $file
message=$(cat $file)
rm $file
# increment version
oldversion=$(cat $DIR/VERSION)
newversion=$(echo print $oldversion + 0.01 | perl)
echo "VERSION: $oldversion -> $newversion"
echo $newversion > $DIR/VERSION
# add to changelog
printf "\n$newversion: $message\n" >> $DIR/INDEV
# commit
git add --all .
git commit -m "$newversion: $message"
;;
*)
showdevusage
;;
esac
;;
*)
showusage
;;
esac
}
if [ ! "$1" ]; then
showusage
exit
fi
runningq
main $@
| true |
1ba76787567e4e2708e90f648c16b8ee9d46e545 | Shell | qileilove/capybaraDemo-1 | /dockerRun.sh | UTF-8 | 3,579 | 4.09375 | 4 | [] | no_license | #!/bin/bash
#
# Runs the docker container in which cucumber executes.
# See usage statement below for more details
#
# NOTE: To pass options to cucumber, you must set the CUCUMBER_OPTS
# environment variable. For example,
# $ CUCUMBER_OPTS="--name MyFeature" ./dockerRun.sh
#
#
# Set defaults
#
debug=false
runAsRoot=false
DRIVER_NAME=selenium
TIMEOUT=10
#
# The features/steps in this example assumes github as the default application
if [ -z "${APPLICATION_URL-}" ]; then
APPLICATION_URL="http://github.com"
fi
while (( "$#" )); do
if [ "$1" == "-u" ]; then
APPLICATION_USERID="${2}"
shift 2
elif [ "$1" == "-p" ]; then
APPLICATION_PASSWORD="${2}"
shift 2
elif [ "$1" == "-d" ]; then
DRIVER_NAME="${2}"
shift 2
elif [ "$1" == "-t" ]; then
TIMEOUT="${2}"
shift 2
elif [ "$1" == "--root" ]; then
runAsRoot=true
shift 1
elif [ "$1" == "-i" ]; then
debug=true
shift 1
else
if [ "$1" != "-h" ]; then
echo "ERROR: invalid argument '$1'"
fi
echo "USAGE: dockerRun.sh [-u userid] [-p password] [-d driverName] [-t timeout]"
echo " [--root] [-i] [-h]"
echo ""
echo "where"
echo " -u userid a valid github user id (required)"
echo " -p password the password for userid (required)"
echo " -d driverName identifies the Capybara driver to use"
echo " (e.g. selenium, selenium_chrome or poltergeist)"
echo " -t timeout identifies the Capybara timeout to use (in seconds)"
echo " --root run the tests as root in the docker container"
echo " -i interactive mode. Starts a bash shell with all of the same"
echo " env vars but doesn't run anything"
echo " -h print this usage statement and exit"
exit 1
fi
done
if [ -z "${APPLICATION_USERID-}" ]; then
echo "ERROR: userid undefined. You must either set the environment variable"
echo " APPLICATION_USERID, or specify it with the -u command line arg"
exit 1
fi
if [ -z "${APPLICATION_PASSWORD-}" ]; then
echo "ERROR: password undefined. You must either set the environment variable"
echo " APPLICATION_PASSWORD, or specify it with the -p command line arg"
exit 1
fi
#
# Get the current UID and GID. These are passed into the container for use in
# creating a container-local user account so ownership of files created in the
# container will match the user in the host OS.
#
CALLER_UID=`id -u`
CALLER_GID=`id -g`
if [ "$debug" == true ]; then
INTERACTIVE_OPTION="-i"
CMD="bash"
elif [ "$runAsRoot" == true ]; then
CMD="runCucumber.sh --root ${CUCUMBER_OPTS}"
elif [ `uname -s` == "Darwin" ]; then
echo "ERROR: missing required argument '--root' for Mac OS X"
exit 1
else
CMD="runCucumber.sh ${CUCUMBER_OPTS}"
fi
docker run --rm --name capybara_demo \
-v /tmp/.X11-unix:/tmp/.X11-unix:ro \
-v /etc/timezone:/etc/timezone:ro \
-v /etc/localtime:/etc/localtime:ro \
-v `pwd`/demo:/capybara:rw \
-e CALLER_UID=${CALLER_UID} \
-e CALLER_GID=${CALLER_GID} \
-e CAPYBARA_DRIVER=${DRIVER_NAME} \
-e CAPYBARA_TIMEOUT=${TIMEOUT} \
-e APPLICATION_URL=${APPLICATION_URL} \
-e APPLICATION_USERID=${APPLICATION_USERID} \
-e APPLICATION_PASSWORD=${APPLICATION_PASSWORD} \
${INTERACTIVE_OPTION} \
-t capybara_demo \
${CMD}
| true |
93fde5a286c8d21b44632acd9d8fc6611bd3e20b | Shell | majinhui04/igrow-cli | /git-log.sh | UTF-8 | 14,363 | 4 | 4 | [
"MIT"
] | permissive | #!/bin/bash
# commit 类型 键
TYPE_MAP=(feat fix refactor style docs chore build ci pref test)
# commit 类型 值
TYPE_TITLE_MAP=(新增 修改 重构 样式 文档 其他 构建 持续集成 优化 测试)
# 当前日期+时间
NOW=$(date "+%F %H:%M")
# 起始日期
SINCE="last.Monday"
# 终止日期
UNTIL=$(date +%F)
# 是否覆盖文件，默认否
FOUCE=0
# 首行是否为生成日期，默认否
PRINT_TIME=0
# 输出目录
OUTPUT_DIR="log"
# 是否已设置作者， 默认否
HAS_SET_AUTHOR=0
# function，去除字符串两头空格
trim() {
trimmed=$1
# https://blog.csdn.net/dongwuming/article/details/50605911
# 从变量$string的结尾, 删除最长匹配$substring的子串
trimmed=${trimmed%% }
# 从变量$string的开头, 删除最长匹配$substring的子串
trimmed=${trimmed## }
# TODO 首部空格无法全部移除
trimmed=${trimmed## }
echo $trimmed
# 移除全部空格
# echo ${trimmed// /}
}
# function，是否应该强制生成文件
shouldFouceResolve() {
# 输出文件已存在 & 不强制生成 则提示并退出
if [ -e $OUTPUT -a $FOUCE -eq 0 ]; then
echo "${OUTPUT} already exists! \n
Please update package.json or remove log file or add '-f' follow the command!\n
"
exit 1
fi
}
# function，首行是否应该输出生成日期
shouldPrintTime() {
if [ $PRINT_TIME -eq 1 ]; then
echo "> Generated on ${NOW} By [Gen-Git-Log](https://www.npmjs.com/package/gen-git-log)\n"
case $MODE in
branch)
# 分支模式
TITLE="${TARGET}...${SOURCE}"
;;
tag)
# 标签模式
TITLE="${TARGET}...v$(getVersion)"
;;
esac
if [ ! -z $TITLE ]; then
# 如果TITLE赋值则组装输出
TITLE="## [${TITLE}](${REMOTE}/compare/${TITLE})"
echo $TITLE
fi
fi
}
# function，获取版本
getVersion() {
# 判断是否自定义版本
if [ -z $VERSION ]; then
# 未传入版本
if [ -z $REPO ]; then
# 没有传repo则package文件为当前目录所有
PKG_PATH="./package.json"
else
PKG_PATH="${REPO}/package.json"
fi
# 自定义version为空时抓取版本
while read line; do
# 抓取定义version行文本
if [[ ${line} == *"version"* ]]; then
# 移除双引号
VERSION=${line//\"/ }
# 移除键名
VERSION=${VERSION##*"version :"}
# 获取版本
VERSION=${VERSION%%" ,"}
break
fi
done <$PKG_PATH
fi
trim $VERSION
}
# function，生成输出文件路径
generateOutPutPath() {
# 输出文件路径，默认“v版本.md”
echo "${OUTPUT_DIR}/v$(getVersion).md"
}
# 生成指定SOURCE TARGET tag差异记录
genSingleTagLog() {
SOU=$1
TAR=$2
if [ ! "$3"x = "0"x ]; then
if [ $SOU = HEAD ]; then
# 如果是与最新HEAD对比则将HEAD设为version
TIT="## [v$(getVersion)](${REMOTE}/compare/${TAR}...v$(getVersion))"
else
TIT="## [${SOU}](${REMOTE}/compare/${TAR}...${SOU})"
fi
echo
echo
echo "${TIT} ($(git -C "${REPO}" log -1 --format=%ad --date=short $SOU))"
fi
# 直接使用分支比对查找所有匹配 log
GIT_PAGER=$(git -C "${REPO}" log --no-merges --reverse --format="${LOG_FORMAT}" "$SOU...$TAR")
if [ ! -z "$GIT_PAGER" ]; then
# 字符串分隔符
IFS="*"
# 分割字符串为数组
singleTagArr=($GIT_PAGER)
# 还原分割符，否则会导致if判断失效
IFS=""
# 循环处理数组
for s in ${singleTagArr[@]}; do
# 去除字符串两头空格
s=$(trim $s)
# 判断字符串非空
if [ ! -z $s ]; then
# 替换全角冒号
s=${s/：/:}
# 循环commit 类型
for type in ${TYPE_MAP[@]}; do
# 组织正则
reg="${type}:"
# 判断commit类型
if [[ ${s} == *"${reg}"* ]]; then
# 裁剪字符串
s=${s##*${reg}}
s=${s%@*}
# 移除空格
s=$(trim $s)
# 动态数组变量赋值
eval COMMIT_${type}='(${COMMIT_'${type}'[*]} $s)'
break
fi
done
fi
done
# 处理数据
typeIndex=0
for type in ${TYPE_MAP[@]}; do
# 拷贝数组
eval type='(${COMMIT_'${type}'[*]})'
# 判断数组是否含有元素
if [ ${#type[*]} != 0 ]; then
echo "#### ${TYPE_TITLE_MAP[$typeIndex]}"
for i in ${type[@]}; do
echo "* ${i}"
done
echo
fi
let typeIndex++
done
fi
}
# 生成tag
genTagLog() {
LOG_FORMAT="$FORMAT_DEFAULT @%ae"
OUTPUT=$(generateOutPutPath)
shouldFouceResolve
# 获取最新标签
LASTEST_TAG=$(git -C "${REPO}" describe --tags $(git -C "${REPO}" rev-list --tags --max-count=1))
if [ -z $SOURCE ]; then
SOURCE="HEAD"
fi
if [ -z $TARGET ]; then
TARGET=$LASTEST_TAG
fi
# 如果传参为 copy 则将结果输出至剪切板
if [ "$1"x = "copy"x ]; then
genSingleTagLog $SOURCE $TARGET 0 | pbcopy
else
(
shouldPrintTime
genSingleTagLog $SOURCE $TARGET 0
) >$OUTPUT
fi
}
# 传参覆盖默认值
while getopts "m:a:s:u:S:T:r:v:ftd:h" arg; do
case $arg in
m)
# 模式
MODE=$OPTARG
;;
a)
# 作者
AUTHOR=$OPTARG
# 已设置作者
HAS_SET_AUTHOR=1
;;
s)
# 起始日期
SINCE=$OPTARG
;;
u)
# 终止日期
UNTIL=$OPTARG
;;
S)
# 源分支/标签
SOURCE=$OPTARG
;;
T)
# 目标分支/标签
TARGET=$OPTARG
;;
r)
# Git 仓库本地路径
REPO=$OPTARG
;;
v)
# 自定义版本
VERSION=$OPTARG
;;
f)
# 强制覆盖文件
FOUCE=1
;;
t)
# 首行输出生成日期
PRINT_TIME=1
;;
d)
# 输出目录路径
OUTPUT_DIR=$OPTARG
;;
h)
echo "
Usage:\n
git-log [options]\n
Options:\n
-m 生成模式 默认：无(周报)，可选：branch(分支比对)、tag(标签比对)、changelog(汇总日志)
-a 想要过滤的作者 默认：$(git config user.name)
-s 起始日期 默认：上周一，格式：2018-01-01
-u 终止日期 默认：当天，格式：2018-01-01
-S 源分支/标签 默认：无，比对模式：当前分支/最近标签
-T 目标分支/标签 默认：无，比对模式：当前分支/当前HEAD
-r Git 仓库本地路径 默认：当前目录
-v 版本号 默认：无，比对模式：仓库路径下 package.json 中 VERSION 字段值
-f 覆盖文件 默认：否，不需要传值
-t log 首行为生成日期 默认：否，不需要传值
-d log 输出目录 默认：仓库路径下 log 文件夹
"
exit 2
;;
?)
echo "unknown argument"
exit 3
;;
esac
done
# 判断是否需要设置默认作者
if [ $HAS_SET_AUTHOR -eq 0 ]; then
# 没有设置过则使用默认作者
AUTHOR=$(git -C "${REPO}" config user.name)
fi
# 获取远程仓库地址
REMOTE=$(git -C "${REPO}" remote -v)
REMOTE=${REMOTE#*git@}
if [ ${REMOTE:0:6}x = "origin"x ]; then
# 如果是origin开头认为是http(s)协议checkout下来的，否则是ssh
REMOTE=${REMOTE#*origin}
REMOTE=${REMOTE%%.git *}
else
REMOTE=${REMOTE%%.git *}
REMOTE="http://${REMOTE/://}"
fi
REMOTE=$(trim $REMOTE)
# 格式化 https://ruby-china.org/topics/939
# %H: commit hash
# %h: 短commit hash
# %an: 提交人名字
# %ae: 提交人邮箱
# %cr: 提交日期, 相对格式(1 day ago)
# %d: ref名称
# %s: commit信息标题
# %cd: 提交日期 (--date= 制定的格式)
FORMAT_DEFAULT=" * %s ([%h](${REMOTE}/commit/%H)) "
# 判断是否指定仓库路径重写输出目录路径
if [ -z $REPO ]; then
OUTPUT_DIR="./${OUTPUT_DIR}"
else
OUTPUT_DIR="${REPO}/${OUTPUT_DIR}"
fi
# 指定目录路径不存在则创建
if [ ! -e $OUTPUT_DIR ]; then
mkdir $OUTPUT_DIR
fi
# 判断提交人，设定输出路径
if [ -z $AUTHOR ]; then
# 提交人为空
LOG_FORMAT="$FORMAT_DEFAULT <%an>"
# 输出文件路径，默认“当前日期.md”
OUTPUT="${OUTPUT_DIR}/$(date +%F).md"
else
# 有提交人
LOG_FORMAT="$FORMAT_DEFAULT - %cr"
# 输出文件路径，默认“提交人名.md”
OUTPUT="${OUTPUT_DIR}/${AUTHOR}.md"
fi
# 默认分支为当前分支
CURRENT_BRANCH=$(git -C "${REPO}" rev-parse --abbrev-ref HEAD)
case $MODE in
branch)
LOG_FORMAT="$FORMAT_DEFAULT @%ae"
OUTPUT=$(generateOutPutPath)
shouldFouceResolve
if [ -z $SOURCE ]; then
SOURCE=$CURRENT_BRANCH
fi
if [ -z $TARGET ]; then
TARGET=$CURRENT_BRANCH
fi
# 直接使用分支比对查找所有匹配 log
GIT_PAGER=$(git -C "${REPO}" log "$SOURCE...$TARGET" --no-merges --reverse --format="${LOG_FORMAT}")
(
shouldPrintTime
if [ ! -z "$GIT_PAGER" ]; then
# 字符串分隔符
IFS="*"
# 分割字符串为数组
arr=($GIT_PAGER)
# 还原分割符，否则会导致if判断失效
IFS=""
# 循环处理数组
for s in ${arr[@]}; do
# 去除字符串两头空格
s=$(trim $s)
# 判断字符串非空
if [ ! -z $s ]; then
# 替换全角冒号
s=${s/：/:}
# 循环commit 类型
for type in ${TYPE_MAP[@]}; do
# 组织正则
reg="${type}:"
# 判断commit类型
if [[ ${s} == *"${reg}"* ]]; then
# 裁剪字符串
s=${s##*${reg}}
s=${s%@*}
# 移除空格
s=$(trim $s)
# 动态数组变量赋值
eval COMMIT_${type}='(${COMMIT_'${type}'[*]} $s)'
break
fi
done
fi
done
# 处理数据
typeIndex=0
for type in ${TYPE_MAP[@]}; do
# 拷贝数组
eval type='(${COMMIT_'${type}'[*]})'
# 判断数组是否含有元素
if [ ${#type[*]} != 0 ]; then
echo "#### ${TYPE_TITLE_MAP[$typeIndex]}"
for i in ${type[@]}; do
echo "* ${i}"
done
echo
fi
let typeIndex++
done
else
echo "${SOURCE}...${TARGET} 分支无差异"
fi
) >$OUTPUT
;;
tag)
genTagLog
;;
changelog)
if [ -z $REPO ]; then
OUTPUT="./CHANGELOG.md"
else
OUTPUT="${REPO}/CHANGELOG.md"
fi
LOG_FORMAT="$FORMAT_DEFAULT @%ae"
shouldFouceResolve
# 标签列表
TAG_LIST=$(git -C "${REPO}" tag)
# 字符串分隔符
IFS="v"
# 分割字符串为数组
arr=($TAG_LIST)
# 还原分割符，否则会导致if判断失效
IFS=""
# 第一次提交commit, 取duan hash
LAST_TAG=$(git -C "${REPO}" rev-list --reverse HEAD | head -1)
LAST_TAG=${LAST_TAG:0:6}
FIRST_TAG="HEAD"
len=$((${#arr[@]} - 1))
(
# 循环处理数组
for ((i = $len; i > 0; i--)); do
s=${arr[$i]}
# 去除字符串两头空格
s=v$(trim $s)
# 判断字符串非空
if [ ! -z $s ]; then
# 不知道为什么一定要缓存一下，否则$s值错乱
TEMP=$s
echo $(genSingleTagLog $FIRST_TAG $s)
FIRST_TAG=$TEMP
fi
done
genSingleTagLog $FIRST_TAG $LAST_TAG
) >$OUTPUT
;;
publish)
# 发布模式
# 站在要发布分支上
# 同步代码
# 修改version
# 执行该命令
# 根据当前版本号生成log文件
# 未传入版本
#genTagLog
# 添加所有文件到暂存区
#git -C "${REPO}" add --all
# 生成commit
#git -C "${REPO}" commit -m "chore: publish version $(getVersion)"
# ***********目前大部分项目不允许使用命令行操作master代码，以下代码暂时废弃************** #
# 用户确认目标分支 https://ask.helplib.com/bash/post_113951
if [ -z $VERSION ]; then
VERSION=`npx select-version-cli`
else
echo ""
fi
read -p "Releasing $VERSION - are you sure? (y/n)" -n 1 -r
echo # (optional) move to a new line
if [[ $REPLY =~ ^[Yy]$ ]]
then
LatestTag=$(git describe --tags `git rev-list --tags --max-count=1`)
# 本地最新tag和即将生成的tag相同 则删除
if [ "$LatestTag" == "$VERSION" ];then
git tag --delete $VERSION
fi
BRANCH="release-v$VERSION-$(date "+%F")"
git checkout -b $BRANCH
npm version $VERSION --message "docs: $VERSION"
git tag --delete "v$VERSION"
genTagLog
# 支持mac
pbcopy <$OUTPUT
git -C "${REPO}" add --all
git -C "${REPO}" commit -m "chore: publish version $(getVersion)"
git tag -a "v$VERSION"
# 先删除远程分支
# git -C "${REPO}" push origin ":refs/tags/v$VERSION"
git -C "${REPO}" push origin "v$VERSION"
git -C "${REPO}" push --set-upstream origin $BRANCH
fi
# BRANCH="develop"
# read -p"Target branch: master111. (y: confirm; n: enter the target branch; c: cancel) " -n 1 -r
# echo "\n"
#
# case $REPLY in
# y)
# ;;
# n)
# read -p"Please enter the target branch (For example, master): " -r
# BRANCH=$REPLY
# ;;
# *)
# echo "canceled"
# exit 5
# ;;
# esac
# 切到branch
#git -C "${REPO}" checkout $BRANCH
# 合并分支到branch
#git -C "${REPO}" merge $CURRENT_BRANCH
#echo "v$(getVersion)"
# 生成tag
#git -C "${REPO}" tag -a "v$(getVersion)" -m ""
# 推送tag
# git -C "${REPO}" push origin --tags
# 推送代码
#git -C "${REPO}" push origin
# 复制release note到剪切板
#pbcopy <$OUTPUT
# 完成
echo "Push success, Release branch is $BRANCH and version is $VERSION !"
;;
copy)
genTagLog "copy"
echo "Log has been copied to the clipboard"
exit 6
;;
*)
shouldFouceResolve
(
shouldPrintTime
# 先根据起始及终止时间查找符合条件的log并且把日期格式化后输出
# 之后遍历所有输出的日期，在根据日期查询当天内的log进行打印
git -C "${REPO}" log --since="${SINCE}" --until="${UNTIL}" --format="%cd" --date=short | sort -u | while read DATE; do
GIT_PAGER=$(git -C "${REPO}" log --no-merges --reverse --format="${LOG_FORMAT}" --since="${DATE} 00:00:00" --until="${DATE} 23:59:59" --author="${AUTHOR}")
if [ ! -z "$GIT_PAGER" ]; then
echo "[${DATE}]"
echo "${GIT_PAGER}"
echo
fi
done
) >$OUTPUT
;;
esac
echo "Log has been written to '${OUTPUT}'"
| true |
5ce152a6af557e939f9f188d6773419293952f21 | Shell | john275/scripts | /movement | UTF-8 | 1,268 | 3.296875 | 3 | [] | no_license | #!/bin/bash
messagesent=false
today=$(date +%Y%m%d)
preamble="Initial Startup - $(date +%Y/%m/%d_%H:%M) - "
gpio=17
gtalkuser=john275
gtalkrecipient=cherylbucke
sleeptime=0.1
message="Movement at Elmstead - "
/usr/local/bin/gpio -g mode ${gpio} up
while $true
do
res=$(/usr/local/bin/gpio -g read ${gpio})
if [ $res == 1 ]
then
if [ "${today}" == "$(date +%Y%m%d)" ]
then
if ! ${messagesent}
then
if (( $(date +%k) > 8 ))
then
now=$(date +%s)
while [ $res == 1 ]
do
res=$(/usr/local/bin/gpio -g read ${gpio})
sleep ${sleeptime}
done
while [ $res == 0 ]
do
res=$(/usr/local/bin/gpio -g read ${gpio})
sleep ${sleeptime}
done
if (( $(($(date +%s)-now))<20))
then
messagesent=true
echo ${preamble}${message}$(date +%H:%M)
echo ${preamble}${message}$(date +%H:%M) | /usr/bin/sendxmpp -t -u ${gtalkuser} -o gmail.com ${gtalkrecipient}
preamble=""
fi
fi
fi
else
today=$(date +%Y%m%d)
messagesent=false
fi
fi
sleep ${sleeptime}
done
| true |
55a2284e5a915b2c41792a02ee49d04884a97c43 | Shell | fjudith/coreos-kubernetes | /multi-node/generic/worker-install.sh | UTF-8 | 10,508 | 3.453125 | 3 | [
"Apache-2.0"
] | permissive | #!/bin/bash
set -e
# List of etcd servers (http://ip:port), comma separated
export ETCD_ENDPOINTS=
# Interface to be mapped
export FLANNEL_IFACE=
# The endpoint the worker node should use to contact controller nodes (https://ip:port)
# In HA configurations this should be an external DNS record or loadbalancer in front of the control nodes.
# However, it is also possible to point directly to a single control node.
export CONTROLLER_ENDPOINT=
# Specify the version (vX.Y.Z) of Kubernetes assets to deploy
# https://kubernetes.io/docs/reference/workloads-18-19/
# https://nixaid.com/deploying-kubernetes-cluster-from-scratch/
export K8S_VER=v1.10.2_coreos.0
# Hyperkube image repository to use.
export HYPERKUBE_IMAGE_REPO=quay.io/coreos/hyperkube
# CNI plugin
# https://github.com/containernetworking/plugins/releases
export CNI_VER=0.7.0
# The CIDR network to use for pod IPs.
# Each pod launched in the cluster will be assigned an IP out of this range.
# Each node will be configured such that these IPs will be routable using the flannel overlay network.
export POD_NETWORK=10.2.0.0/16
# The IP address of the cluster DNS service.
# This must be the same DNS_SERVICE_IP used when configuring the controller nodes.
export DNS_SERVICE_IP=10.3.0.10
# Whether to use Calico for Kubernetes network policy.
export USE_CALICO=false
# Determines the container runtime for kubernetes to use. Accepts 'docker' or 'rkt'.
export CONTAINER_RUNTIME=docker
# The above settings can optionally be overridden using an environment file:
ENV_FILE=/run/coreos-kubernetes/options.env
# To run a self hosted Calico install it needs to be able to write to the CNI dir
if [ "${USE_CALICO}" = "true" ]; then
export CALICO_OPTS="--volume cni-bin,kind=host,source=/opt/cni/bin \
--mount volume=cni-bin,target=/opt/cni/bin"
else
export CALICO_OPTS=""
fi
# -------------
function init_config {
local REQUIRED=( 'ADVERTISE_IP' 'ETCD_ENDPOINTS' 'CONTROLLER_ENDPOINT' 'DNS_SERVICE_IP' 'K8S_VER' 'HYPERKUBE_IMAGE_REPO' 'USE_CALICO' )
if [ -f $ENV_FILE ]; then
export $(cat $ENV_FILE | xargs)
fi
if [ -z $ADVERTISE_IP ]; then
export ADVERTISE_IP=$(awk -F= '/COREOS_PUBLIC_IPV4/ {print $2}' /etc/environment)
fi
for REQ in "${REQUIRED[@]}"; do
if [ -z "$(eval echo \$$REQ)" ]; then
echo "Missing required config value: ${REQ}"
exit 1
fi
done
}
function init_templates {
local TEMPLATE=/etc/systemd/system/kubelet.service
local uuid_file="/var/run/kubelet-pod.uuid"
if [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
[Service]
Environment=PATH=/opt/bin/:/usr/bin/:/usr/sbin:${PATH}
Environment=KUBELET_IMAGE_TAG=${K8S_VER}
Environment=KUBELET_IMAGE_URL=${HYPERKUBE_IMAGE_REPO}
Environment="RKT_RUN_ARGS=--uuid-file-save=${uuid_file} \
--volume dns,kind=host,source=/etc/resolv.conf \
--mount volume=dns,target=/etc/resolv.conf \
--volume rkt,kind=host,source=/opt/bin/host-rkt \
--mount volume=rkt,target=/usr/bin/rkt \
--volume var-lib-rkt,kind=host,source=/var/lib/rkt \
--mount volume=var-lib-rkt,target=/var/lib/rkt \
--volume stage,kind=host,source=/tmp \
--mount volume=stage,target=/tmp \
--volume var-log,kind=host,source=/var/log \
--mount volume=var-log,target=/var/log \
--volume modprobe,kind=host,source=/usr/sbin/modprobe \
--mount volume=modprobe,target=/usr/sbin/modprobe \
--volume lib-modules,kind=host,source=/lib/modules \
--mount volume=lib-modules,target=/lib/modules \
--volume etc-cni-netd,kind=host,source=/etc/cni/net.d \
--mount volume=etc-cni-netd,target=/etc/cni/net.d \
${CALICO_OPTS}"
ExecStartPre=/usr/bin/mkdir -p /etc/kubernetes/manifests
ExecStartPre=/usr/bin/mkdir -p /var/log/containers
ExecStartPre=-/usr/bin/rkt rm --uuid-file=${uuid_file}
ExecStartPre=/usr/bin/mkdir -p /opt/cni/bin
ExecStartPre=/usr/bin/mkdir -p /etc/cni/net.d
ExecStartPre=/usr/bin/mkdir -p /var/lib/kubelet/volumeplugins
ExecStartPre=/usr/bin/mkdir -p /var/lib/rook
ExecStart=/usr/lib/coreos/kubelet-wrapper \
--anonymous-auth=false \
--node-labels=kubernetes.io/role=node \
--cni-conf-dir=/etc/cni/net.d \
--cni-bin-dir=/opt/cni/bin \
--network-plugin=cni \
--container-runtime=${CONTAINER_RUNTIME} \
--rkt-path=/usr/bin/rkt \
--register-node=true \
--allow-privileged=true \
--pod-manifest-path=/etc/kubernetes/manifests \
--hostname-override=${ADVERTISE_IP} \
--cluster_dns=${DNS_SERVICE_IP} \
--cluster_domain=cluster.local \
--kubeconfig=/etc/kubernetes/kubelet.kubeconfig \
--bootstrap-kubeconfig=/etc/kubernetes/bootstrap.kubeconfig \
--client-ca-file=/etc/kubernetes/ssl/ca.pem \
--tls-cert-file=/etc/kubernetes/ssl/node.pem \
--tls-private-key-file=/etc/kubernetes/ssl/node-key.pem \
--volume-plugin-dir=/etc/kubernetes/volumeplugins \
--authentication-token-webhook=true \
--authorization-mode=Webhook \
--v=2
ExecStop=-/usr/bin/rkt stop --uuid-file=${uuid_file}
Restart=always
RestartSec=10
[Install]
WantedBy=multi-user.target
EOF
fi
local TEMPLATE=/opt/bin/host-rkt
if [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
#!/bin/sh
# This is bind mounted into the kubelet rootfs and all rkt shell-outs go
# through this rkt wrapper. It essentially enters the host mount namespace
# (which it is already in) only for the purpose of breaking out of the chroot
# before calling rkt. It makes things like rkt gc work and avoids bind mounting
# in certain rkt filesystem dependancies into the kubelet rootfs. This can
# eventually be obviated when the write-api stuff gets upstream and rkt gc is
# through the api-server. Related issue:
# https://github.com/coreos/rkt/issues/2878
exec nsenter -m -u -i -n -p -t 1 -- /usr/bin/rkt "\$@"
EOF
fi
local TEMPLATE=/etc/systemd/system/load-rkt-stage1.service
if [ ${CONTAINER_RUNTIME} = "rkt" ] && [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
[Unit]
Description=Load rkt stage1 images
Documentation=http://github.com/coreos/rkt
Requires=network-online.target
After=network-online.target
Before=rkt-api.service
[Service]
Type=oneshot
RemainAfterExit=yes
ExecStart=/usr/bin/rkt fetch /usr/lib/rkt/stage1-images/stage1-coreos.aci /usr/lib/rkt/stage1-images/stage1-fly.aci --insecure-options=image
[Install]
RequiredBy=rkt-api.service
EOF
fi
local TEMPLATE=/etc/systemd/system/rkt-api.service
if [ ${CONTAINER_RUNTIME} = "rkt" ] && [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
[Unit]
Before=kubelet.service
[Service]
ExecStart=/usr/bin/rkt api-service
Restart=always
RestartSec=10
[Install]
RequiredBy=kubelet.service
EOF
fi
local TEMPLATE=/etc/kubernetes/kubelet.kubeconfig
if [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
apiVersion: v1
kind: Config
clusters:
- name: local
cluster:
server: ${CONTROLLER_ENDPOINT}
certificate-authority: /etc/kubernetes/ssl/ca.pem
users:
- name: system:node:${ADVERTISE_IP}
user:
client-certificate: /etc/kubernetes/ssl/node.pem
client-key: /etc/kubernetes/ssl/node-key.pem
contexts:
- context:
cluster: local
user: system:node:${ADVERTISE_IP}
name: default
current-context: default
EOF
fi
local TEMPLATE=/etc/kubernetes/bootstrap.kubeconfig
if [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
apiVersion: v1
kind: Config
clusters:
- name: local
cluster:
server: ${CONTROLLER_ENDPOINT}
certificate-authority: /etc/kubernetes/ssl/ca.pem
users:
- name: kubelet-bootstrap
user:
token: $(cat /etc/kubernetes/token.csv | awk -F ',' '{print $1}')
contexts:
- context:
cluster: local
user: kubelet-bootstrap
name: default
current-context: default
EOF
fi
local TEMPLATE=/etc/kubernetes/kube-proxy.kubeconfig
if [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
apiVersion: v1
kind: Config
clusters:
- name: local
cluster:
server: ${CONTROLLER_ENDPOINT}
certificate-authority: /etc/kubernetes/ssl/ca.pem
users:
- name: kube-proxy
user:
client-certificate: /etc/kubernetes/ssl/kube-proxy.pem
client-key: /etc/kubernetes/ssl/kube-proxy-key.pem
contexts:
- context:
cluster: local
user: kube-proxy
name: default
current-context: default
EOF
fi
local TEMPLATE=/etc/kubernetes/manifests/kube-proxy.yaml
if [ ! -f $TEMPLATE ]; then
echo "TEMPLATE: $TEMPLATE"
mkdir -p $(dirname $TEMPLATE)
cat << EOF > $TEMPLATE
apiVersion: v1
kind: Pod
metadata:
name: kube-proxy
namespace: kube-system
annotations:
rkt.alpha.kubernetes.io/stage1-name-override: coreos.com/rkt/stage1-fly
spec:
hostNetwork: true
containers:
- name: kube-proxy
image: ${HYPERKUBE_IMAGE_REPO}:$K8S_VER
command:
- /hyperkube
- proxy
- --master=${CONTROLLER_ENDPOINT}
- --cluster-cidr=${POD_NETWORK}
- --kubeconfig=/etc/kubernetes/kube-proxy.kubeconfig
- --bind-address=${ADVERTISE_IP}
- --logtostderr=true
- --masquerade-all
- --v=2
securityContext:
privileged: true
volumeMounts:
- mountPath: /etc/ssl/certs
name: "ssl-certs"
- mountPath: /etc/kubernetes/kube-proxy.kubeconfig
name: "kubeconfig"
readOnly: true
- mountPath: /etc/kubernetes/ssl
name: "etc-kube-ssl"
readOnly: true
- mountPath: /var/run/dbus
name: dbus
readOnly: false
volumes:
- name: "ssl-certs"
hostPath:
path: "/usr/share/ca-certificates"
- name: "kubeconfig"
hostPath:
path: "/etc/kubernetes/kube-proxy.kubeconfig"
- name: "etc-kube-ssl"
hostPath:
path: "/etc/kubernetes/ssl"
- hostPath:
path: /var/run/dbus
name: dbus
EOF
fi
}
init_config
init_templates
chmod +x /opt/bin/host-rkt
systemctl stop update-engine; systemctl mask update-engine
systemctl daemon-reload
if [ $CONTAINER_RUNTIME = "rkt" ]; then
systemctl enable load-rkt-stage1
systemctl enable rkt-api
fi
systemctl enable kubelet; systemctl start kubelet
| true |
54d0cf9258ad3fe24289496850a79104a84271a4 | Shell | cloudflare/python-cloudflare | /examples/example_paging_thru_zones.sh | UTF-8 | 782 | 3.40625 | 3 | [
"MIT"
] | permissive | :
tmp=/tmp/$$_
trap "rm ${tmp}; exit 0" 0 1 2 15
PAGE_NUMBER=0
while true
do
# grab the next page
PAGE_NUMBER=`expr ${PAGE_NUMBER} + 1`
cli4 --raw per_page==5 page==${PAGE_NUMBER} /zones > ${tmp}
domains=`jq -c '.|.result|.[]|.name' < ${tmp} | tr -d '"'`
result_info=`jq -c '.|.result_info' < ${tmp}`
COUNT=` echo "${result_info}" | jq .count`
PAGE=` echo "${result_info}" | jq .page`
PER_PAGE=` echo "${result_info}" | jq .per_page`
TOTAL_COUNT=`echo "${result_info}" | jq .total_count`
TOTAL_PAGES=`echo "${result_info}" | jq .total_pages`
echo COUNT=${COUNT} PAGE=${PAGE} PER_PAGE=${PER_PAGE} TOTAL_COUNT=${TOTAL_COUNT} TOTAL_PAGES=${TOTAL_PAGES} -- ${domains}
if [ "${PAGE_NUMBER}" == "${TOTAL_PAGES}" ]
then
## last section
break
fi
done
| true |
30c84f82ab9f8eefff1fd9f040f01ff53d60b66b | Shell | BigDataHub/MariaDB-Manager-GREX | /skysql/steps/configure.sh | UTF-8 | 3,612 | 3.578125 | 4 | [] | no_license | #!/bin/bash
#
# This file is distributed as part of MariaDB Manager. It is free
# software: you can redistribute it and/or modify it under the terms of the
# GNU General Public License as published by the Free Software Foundation,
# version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 51
# Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#
# Copyright 2012-2014 SkySQL Corporation Ab
#
# Author: Marcos Amaral
# Date: July 2013
#
#
# This script does the necessary configuration steps to have the node ready for
# command execution.
#
logger -p user.info -t MariaDB-Manager-Remote "Command start: configure"
trap cleanup SIGTERM
cleanup() {
if [[ -f /etc/my.cnf.d/skysql-galera.cnf ]]; then
rm -f /etc/my.cnf.d/skysql-galera.cnf
fi
exit 1
}
# Determining path of galera library
if [[ -f /usr/lib/galera/libgalera_smm.so ]]; then
galera_lib_path="/usr/lib/galera/libgalera_smm.so"
elif [[ -f /usr/lib64/galera/libgalera_smm.so ]]; then
galera_lib_path="/usr/lib64/galera/libgalera_smm.so"
else
logger -p user.error -t MariaDB-Manager-Remote "No Galera wsrep library found."
set_error "Failed to find Galera wsrep library."
exit 1
fi
# Creating MariaDB configuration file
hostname=$(uname -n)
sed -e "s/###NODE-ADDRESS###/$privateip/" \
-e "s/###NODE-NAME###/$nodename/" \
-e "s/###REP-USERNAME###/$rep_username/" \
-e "s/###REP-PASSWORD###/$rep_password/" \
-e "s|###GALERA-LIB-PATH###|$galera_lib_path|" \
steps/conf_files/skysql-galera.cnf > /etc/my.cnf.d/skysql-galera.cnf
# Setting up MariaDB users
/etc/init.d/mysql start
sleep 5
mysql -u root -e "DELETE FROM mysql.user WHERE user = ''; \
GRANT ALL PRIVILEGES ON *.* TO $rep_username@'%' IDENTIFIED BY '$rep_password'; \
GRANT ALL PRIVILEGES ON *.* TO $db_username@'%' IDENTIFIED BY '$db_password'; \
FLUSH PRIVILEGES;"
/etc/init.d/mysql stop
# Configuring datadir in my.cnf (using hardcoded dir /var/lib/mysql)
my_cnf_path=$(whereis my.cnf | awk 'END { if (NF >= 2) print $2; }')
if [[ my_cnf_path != "" ]]; then
sed -e "s|export my_cnf_file=.*|export my_cnf_file=\"$my_cnf_path\"|" \
mysql-config.sh > /tmp/mysql-config.sh.tmp
mv /tmp/mysql-config.sh.tmp mysql-config.sh
else
my_cnf_path=$(cat mysql-config.sh | \
awk 'BEGIN { FS="=" } { gsub("\"", "", $2); if ($1 == "export my_cnf_file") print $2 }')
fi
cat /etc/my.cnf | grep -q ^datadir=.*
if [[ $? = 0 ]]; then
sed -e "s|datadir=.*|datadir=/var/lib/mysql|" $my_cnf_path > /tmp/my.cnf.tmp
mv /tmp/my.cnf.tmp $my_cnf_path
else
echo "[mysqld]" >> $my_cnf_path
echo "datadir=/var/lib/mysql" >> $my_cnf_path
fi
# Disabling mysqld auto startup on boot
chkconfig --del mysql
# Updating node state
state_json=$(api_call "PUT" "system/$system_id/node/$node_id" "state=provisioned")
if [[ $? != 0 ]] ; then
set_error "Failed to set the node state to provisioned"
logger -p user.error -t MariaDB-Manager-Remote "Failed to set the node state to provisioned"
exit 1
fi
json_error "$state_json"
if [[ "$json_err" != "0" ]]; then
set_error "Failed to set the node state to provisioned"
logger -p user.error -t MariaDB-Manager-Remote "Failed to set the node state to provisioned"
exit 1
fi
| true |
c2f98be1d7b54c785e0dc27b2fc84f78185b951b | Shell | braiins/braiins-os-feeds | /miner_recovery/files/miner_recovery.sh | UTF-8 | 2,056 | 4 | 4 | [] | no_license | #!/bin/sh
# redirect STDOUT and STDERR to /dev/kmsg
exec 1<&- 2<&- 1>/dev/kmsg 2>&1
RECOVERY_MTD=/dev/mtd6
FIMRWARE_MTD=/dev/mtd7
FACTORY_OFFSET=0x800000
FACTORY_SIZE=0xC00000
FPGA_OFFSET=0x1400000
FPGA_SIZE=0x100000
SD_DIR=/mnt
SD_FACTORY_BIN_PATH=$SD_DIR/factory.bin
SD_SYSTEM_BIT_PATH=$SD_DIR/system.bit
FACTORY_BIN_PATH=/tmp/factory.bin
SYSTEM_BIT_PATH=/tmp/system.bit
mtd_write() {
mtd -e "$2" write "$1" "$2"
}
echo "Miner is in the recovery mode!"
# try to set LEDs to signal recovery mode
echo timer > "/sys/class/leds/Green LED/trigger"
echo nand-disk > "/sys/class/leds/Red LED/trigger"
# prevent NAND corruption when U-Boot env cannot be read
if [ -n "$(fw_printenv 2>&1 >/dev/null)" ]; then
echo "Do not use 'fw_setenv' to prevent NAND corruption!"
exit 1
fi
FACTORY_RESET=$(fw_printenv -n factory_reset 2>/dev/null)
SD_IMAGES=$(fw_printenv -n sd_images 2>/dev/null)
# immediately exit when error occurs
set -e
if [ x${FACTORY_RESET} == x"yes" ]; then
echo "Resetting to factory settings..."
if [ x${SD_IMAGES} == x"yes" ]; then
echo "recovery: using SD images for factory reset"
# mount SD
mount /dev/mmcblk0p1 ${SD_DIR}
# copy factory image to temp
cp "$SD_FACTORY_BIN_PATH" "$FACTORY_BIN_PATH"
# compress bitstream for FPGA
gzip -c "$SD_SYSTEM_BIT_PATH" > "$SYSTEM_BIT_PATH"
umount ${SD_DIR}
else
# get uncompressed factory image
nanddump -s ${FACTORY_OFFSET} -l ${FACTORY_SIZE} ${RECOVERY_MTD} \
| gunzip \
> "$FACTORY_BIN_PATH"
# get bitstream for FPGA
nanddump -s ${FPGA_OFFSET} -l ${FPGA_SIZE} ${RECOVERY_MTD} \
> "$SYSTEM_BIT_PATH"
fi
# write the same FPGA bitstream to both MTD partitions
mtd_write "$SYSTEM_BIT_PATH" fpga1
mtd_write "$SYSTEM_BIT_PATH" fpga2
# erase all firmware partition
mtd erase firmware1
mtd erase firmware2
ubiformat ${FIMRWARE_MTD} -f "$FACTORY_BIN_PATH"
# remove factory reset mode from U-Boot env
fw_setenv factory_reset
sync
echo "recovery: factory reset has been successful!"
# reboot system
echo "Restarting system..."
reboot
fi
| true |
8de12441d4b683b1ca5abab53345d13dfc199a22 | Shell | ciax/ciax-xml | /work/successtag.sh | UTF-8 | 401 | 3.421875 | 3 | [] | no_license | #!/bin/bash
# Add git tag for the version of successful operation
# You can Specify date
[ "$1" = -s ] && { s=1; shift; }
date=$(date ${1:+-d $1} +%Y/%m/%d)
br=$(git branch --contains)
tag="Success!${PROJ^^}@$HOSTNAME($date)-${br#* }"
git check-ref-format "$tag" || { echo "Invalid format"; exit 1; }
echo "$tag"
[ "$s" ] || { echo "successtag (-s: real setting)"; exit; }
git tag $tag
git push --tag
| true |
4cac6690390db95be19227323ed0e7629d77a77a | Shell | irsols-devops/azureAcctSetups | /list_registered_apps.sh | UTF-8 | 493 | 2.59375 | 3 | [] | no_license | #!/bin/bash
# Provided by IRSOLS DevOps team
# IRSOLS Inc @irsols
# www.irsols.com / Your Cloud Native Edge
# MIT License. Attribution required
# Reference: https://docs.microsoft.com/en-us/cli/azure/ad?view=azure-cli-latest
echo " Following are the list of Apps currently registered w/ default subscription ID"
az ad app list --query [*].[displayName,appId]
echo "Carefully review these Apps in AZ Portal and then delete unused/unwanted ones using"
echo "az ad app delete --id <App_Id>"
| true |
45e8b61b2e12a2b484e051c44d4636aefc955851 | Shell | vtadrones/rogue-scripts | /geogit-scripts/install-geogit | UTF-8 | 522 | 2.84375 | 3 | [] | no_license | #!/bin/bash
source settings;
printf "\n\n\t Downloading GeoGit...\n\n";
cd $GEOGIT_INSTALL;
git clone https://github.com/ROGUE-JCTD/GeoGit.git -b SprintRelease;
printf "\n\n\t Building GeoGit...\n\n";
cd GeoGit/src/parent;
mvn clean install -DskipTests;
chown $GEOGIT_OWNER:$GEOGIT_OWNER -R $GEOGIT_HOME;
echo "export PATH=$PATH:$GEOGIT_HOME/src/cli-app/target/geogit/bin" >> /etc/profile;
printf "\n\n\t GeoGit installed... To start using GeoGit, open a new shell, or run\n";
printf "\t source /etc/profile\n\n";
| true |
71dfcc9a641a72f7b712e56a24a88417977b1cf9 | Shell | sebidude/dotfiles | /kubernetes | UTF-8 | 3,255 | 3.453125 | 3 | [] | no_license | #!/bin/bash
export PATH="$PATH:$HOME/.krew/bin"
KUBECONFIG_DEFAULT="$HOME/.kube/default/default.conf"
kctl=$(which kubectl)
if [ -n "$kctl" -a -x "$kctl" ]; then
source <(kubectl completion bash)
fi
helmbin=$(which helm)
if [ -n "$helmbin" -a -x "$helmbin" ]; then
source <(helm completion bash)
fi
updateKubectl() {
if [ -n "$1" ]; then
KUBECTLVERSION="$1"
else
KUBECTLVERSION=$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)
fi
echo Updating kubectl to $KUBECTLVERSION
curl -s -LO https://storage.googleapis.com/kubernetes-release/release/${KUBECTLVERSION}/bin/linux/amd64/kubectl
mkdir -p $HOME/bin
chmod 755 kubectl
mv kubectl $HOME/bin/kubectl-$KUBECTLVERSION
rm -f $HOME/bin/kubectl
ln -s $HOME/bin/kubectl-$KUBECTLVERSION $HOME/bin/kubectl
}
debugpodon() {
cat << EOF | kubectl apply -f -
apiVersion: v1
kind: Pod
metadata:
name: $(whoami)-debug-$1
labels:
owner: $(whoami)
spec:
nodeSelector:
kubernetes.io/hostname: $1
terminationGracePeriodSeconds: 1
containers:
- name: alpine
image: alpine
command:
- sleep
- infinity
EOF
while sleep 1
do
READY=$(kubectl get pod $(whoami)-debug-$1 | grep Running )
[[ -n "$READY" ]] && {
kubectl exec -i -t $(whoami)-debug-$1 -- /bin/sh
kubectl delete pod $(whoami)-debug-$1
break
}
done
}
debugpod() {
cat << EOF | kubectl apply -f -
apiVersion: v1
kind: Pod
metadata:
name: $(whoami)-debug
labels:
owner: $(whoami)
spec:
terminationGracePeriodSeconds: 1
containers:
- name: alpine
image: alpine
command:
- sleep
- infinity
EOF
while sleep 1
do
READY=$(kubectl get pod $(whoami)-debug | grep Running )
[[ -n "$READY" ]] && {
kubectl exec -i -t $(whoami)-debug -- /bin/sh
kubectl delete pod $(whoami)-debug
break
}
done
}
kubeconfig() {
if [ -n "$1" ]; then
KUBECONFIG_DEFAULT="$1"
KUBECONFIG=$KUBECONFIG_DEFAULT
elif [ -z "$KUBECONFIG" ]; then
KUBECONFIG=$KUBECONFIG_DEFAULT
fi
cp $KUBECONFIG $HOME/.kube/default/current-$$.conf
export PREVIOUS_KUBECONFIG=$KUBECONFIG;
export KUBECONFIG=$HOME/.kube/default/current-$$.conf;
}
_getKubeNamespaces() {
local curr_arg;
local NAMESPACES;
curr_arg=${COMP_WORDS[COMP_CWORD]}
NAMESPACES="$(kubectl get ns -o jsonpath='{.items[*].metadata.name}')"
COMPREPLY=( $(compgen -W "${NAMESPACES}" -- $curr_arg ) );
}
_getKubeContexts() {
local curr_arg;
local CONTEXTS;
curr_arg=${COMP_WORDS[COMP_CWORD]}
CONTEXTS="$(kubectl config get-contexts -o name)"
COMPREPLY=( $(compgen -W "${CONTEXTS}" -- $curr_arg ) );
}
ktx() {
if [ -n "$1" ]; then
kubectl config use-context $1
return 0
fi
return 1
}
kubens() {
if [ -n "$1" ]; then
kubectl config set-context --current --namespace=$1
return 0
fi
return 1
}
getAdminConfig() {
echo "not implemented"
}
cleanupSession() {
rm $HOME/.kube/default/current-$$.conf
}
alias k=kubectl
alias watch="watch "
complete -F __start_kubectl k
complete -F _getKubeNamespaces kubens
complete -F _getKubeContexts ktx
trap cleanupSession EXIT
kubeconfig
| true |
ef310c8a96b8cec5456dc17455a5f397b58cf033 | Shell | hcary/aws-devops | /src/rd-aws | UTF-8 | 1,164 | 2.703125 | 3 | [] | no_license | #!/bin/bash
#
# This file is part of the aws-devops distribution (https://github.com/hcary/aws-devops).
# Copyright (c) 2019 Harvey Cary.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
MYUSER=$USER
MYUID=`id -u $USER`
DEST=/home/$MYUSER
docker run \
--name $USER.$$ \
--hostname "aws" \
-e "MYUSER=$MYUSER" \
-e "MYUID=$MYUID" \
-it \
--rm \
--mount type=bind,src="$(echo $HOME)",dst=/home/"$(echo $USER)" \
${COMPANY}/aws \
/bin/bash
#docker run --name $USER.$$ -e "MYUSER=$MYUSER" -e "MYUID=$MYUID" -t -i --rm --mount 'type=bind,src=/Users/hcary,dst=/home/hcary' rc3labs/youtube-dl /bin/bash
| true |
3740f18e0606c4cb270690ca3bda28abbf98193c | Shell | stockmind/gpd-pocket-ubuntu-respin | /update-kernel.sh | UTF-8 | 462 | 3.34375 | 3 | [] | no_license | #!/bin/bash
LATESTKERNEL="gpdpocket-20190225-5.0.0-rc7-kernel-files.zip"
mkdir -p update-kernel
cd update-kernel
if [ ! -f "$LATESTKERNEL" ]; then
echo "Downloading kernel files...."
wget "https://bitbucket.org/simone_nunzi/gpdpocket-kernel/downloads/$LATESTKERNEL"
fi
echo "Extracting kernel files..."
unzip -o "$LATESTKERNEL"
echo "Installing kernel..."
sudo dpkg -i *.deb
echo "Update grub..."
sudo update-grub
rm *.deb
cd ..
rm -rfd update-kernel
| true |
b99ae3d74541383a764a6a0a84e22d94d453c15e | Shell | delianides/dotfiles | /install | UTF-8 | 3,485 | 3.71875 | 4 | [
"MIT"
] | permissive | #!/bin/bash
# vim: tw=0
# from https://github.com/gabebw/dotfiles/blob/main/install.sh
set -eo pipefail
mkdir -p ~/Code
color() {
local colornumber="$1"
shift
tput setaf "$colornumber"
echo "$*"
tput sgr0
}
red() { color 1 "$*"; }
green() { color 2 "$*"; }
yellow() { color 3 "$*"; }
info() {
green "=== $*"
}
error() {
red "!! $*"
}
stay_awake_while() {
caffeinate -dims "$@"
}
quietly_brew_bundle() {
local brewfile=$1
shift
local regex='(^Using )|Homebrew Bundle complete|Skipping install of|It is not currently installed|Verifying SHA-256|==> (Downloading|Purging)|Already downloaded:|No SHA-256'
stay_awake_while brew bundle --no-lock --file="$brewfile" "$@" | (grep -vE "$regex" || true)
}
command_does_not_exist() {
! command -v "$1" >/dev/null
}
info "Checking for command-line tools..."
if command_does_not_exist xcodebuild; then
stay_awake_while xcode-select --install
fi
info "Installing Homebrew (if not already installed)..."
if command_does_not_exist brew; then
stay_awake_while /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
fi
info "Installing Homebrew packages..."
brew tap homebrew/bundle
brew install mas 2>/dev/null
quietly_brew_bundle "$HOME/Code/dotfiles/Brewfile"
quietly_brew_bundle "$HOME/Code/dotfiles/Brewfile.lang" || true
quietly_brew_bundle "$HOME/Code/dotfiles/Brewfile.casks" || true
app_store_id=$(mas account || true)
desired_app_store_id="apple@drew.delianides.com"
if [[ "$app_store_id" == "$desired_app_store_id" ]]; then
quietly_brew_bundle "$HOME/Code/dotfiles/Brewfile.mas"
else
if mas account &>/dev/null; then
error "You are signed in to the App Store as $app_store_id."
error "Sign out and re-sign in as $desired_app_store_id"
else
error "You are not signed in to the App Store."
error "Sign in as $desired_app_store_id"
fi
error "(This won't affect your iCloud account.)"
fi
if ! echo "$SHELL" | grep -Fq zsh; then
info "Your shell is not Zsh. Changing it to Zsh..."
chsh -s /bin/zsh
fi
info "Linking dotfiles into ~..."
# Before `rcup` runs, there is no ~/.rcrc, so we must tell `rcup` where to look.
# We need the rcrc because it tells `rcup` to ignore thousands of useless Vim
# backup files that slow it down significantly.
export RCRC=rcrc
stay_awake_while rcup -d .
info "Setting Pre-Commit Hook"
cp "$HOME/Code/dotfiles/lib/dotfiles-precommit-hook" "$HOME/Code/dotfiles/.git/hooks/pre-commit"
info "Installing MacOS system settings..."
stay_awake_while sudo "$HOME"/Code/dotfiles/system/macos
info "Installing ASDF language version manager..."
alias install_asdf_plugin=add_or_update_asdf_plugin
add_or_update_asdf_plugin() {
local name="$1"
local url="$2"
if ! asdf plugin-list | grep -Fq "$name"; then
asdf plugin-add "$name" "$url"
else
asdf plugin-update "$name"
fi
}
declare -a languages=(
"nodejs"
"python"
"ruby"
"rust"
"golang"
)
for language in "${languages[@]}"; do
add_or_update_asdf_plugin "$language"
done
# Installs to ~/.terminfo
echo "Installing italics-capable terminfo files..."
if ! [[ -r ~/.terminfo/61/alacritty ]]; then
alacritty_terminfo=$(mktemp)
stay_awake_while curl -o "$alacritty_terminfo" https://raw.githubusercontent.com/jwilm/alacritty/master/extra/alacritty.info
tic -xe alacritty,alacritty-direct "$alacritty_terminfo"
fi
info "Success!"
yellow "== Post-install instructions =="
yellow "1. Remap Caps Lock to CTRL in the Keyboard prefpane"
yellow "2. Make sure to install TMUX plugins: prefix+I"
| true |
e6cb4071de60b920bc9384da767a39aa27bb1422 | Shell | joecox/dotfiles | /zshrc | UTF-8 | 3,390 | 2.859375 | 3 | [] | no_license | # Path to your oh-my-zsh installation.
export ZSH=$HOME/.oh-my-zsh
# Set name of the theme to load.
# Look in ~/.oh-my-zsh/themes/
# Optionally, if you set this to "random", it'll load a random theme each
# time that oh-my-zsh is loaded.
# ZSH_THEME="cox"
ZSH_THEME="robbyrussell"
# Uncomment the following line to use case-sensitive completion.
# CASE_SENSITIVE="true"
# Uncomment the following line to use hyphen-insensitive completion. Case
# sensitive completion must be off. _ and - will be interchangeable.
HYPHEN_INSENSITIVE="true"
# Uncomment the following line to disable bi-weekly auto-update checks.
# DISABLE_AUTO_UPDATE="true"
# Uncomment the following line to change how often to auto-update (in days).
# export UPDATE_ZSH_DAYS=13
# Uncomment the following line to disable colors in ls.
# DISABLE_LS_COLORS="true"
# Uncomment the following line to disable auto-setting terminal title.
# DISABLE_AUTO_TITLE="true"
# Uncomment the following line to enable command auto-correction.
# ENABLE_CORRECTION="true"
# Uncomment the following line to display red dots whilst waiting for completion.
# COMPLETION_WAITING_DOTS="true"
# Uncomment the following line if you want to disable marking untracked files
# under VCS as dirty. This makes repository status check for large repositories
# much, much faster.
# DISABLE_UNTRACKED_FILES_DIRTY="true"
# Uncomment the following line if you want to change the command execution time
# stamp shown in the history command output.
# The optional three formats: "mm/dd/yyyy"|"dd.mm.yyyy"|"yyyy-mm-dd"
# HIST_STAMPS="mm/dd/yyyy"
# Would you like to use another custom folder than $ZSH/custom?
# ZSH_CUSTOM=/path/to/new-custom-folder
# Which plugins would you like to load? (plugins can be found in ~/.oh-my-zsh/plugins/*)
# Custom plugins may be added to ~/.oh-my-zsh/custom/plugins/
# Example format: plugins=(rails git textmate ruby lighthouse)
# Add wisely, as too many plugins slow down shell startup.
plugins=(git)
# User configuration
export PATH="/usr/local/bin:$PATH"
source $ZSH/oh-my-zsh.sh
# You may need to manually set your language environment
# export LANG=en_US.UTF-8
# Preferred editor for local and remote sessions
# if [[ -n $SSH_CONNECTION ]]; then
# export EDITOR='vim'
# else
# export EDITOR='mvim'
# fi
export EDITOR="code --wait --new-window"
export VISUAL="$EDITOR"
# Compilation flags
# export ARCHFLAGS="-arch x86_64"
# ssh
# export SSH_KEY_PATH="~/.ssh/dsa_id"
# Set personal aliases, overriding those provided by oh-my-zsh libs,
# plugins, and themes. Aliases can be placed here, though oh-my-zsh
# users are encouraged to define aliases within the ZSH_CUSTOM folder.
# For a full list of active aliases, run `alias`.
#
# Example aliases
# alias zshconfig="mate ~/.zshrc"
# alias ohmyzsh="mate ~/.oh-my-zsh"
alias re="source ~/.zshrc"
alias algrep="alias | grep"
alias ll="ls -lahoGF"
alias eamcs="emacs"
alias shrug="echo -n '¯\_(ツ)_/¯' | tee /dev/tty | pbcopy; echo"
alias gbl="git branch -l"
alias gbd="git branch -d"
# functions
synesthesia() {
hex=$(echo "$@" | shasum | cut -c 1-6)
echo $hex
echo -n $hex | pbcopy
open "https://www.google.com/search?q=%23${hex}"
}
server() {
port=${1:-8000}
python -m SimpleHTTPServer $port
}
# custom styles
# LSCOLORS=exFxcxdxGxcdedabagacad
# misc
unsetopt AUTO_CD
[[ -f "$HOME/.zshrc-local" ]] && source "$HOME/.zshrc-local"
| true |
433658528e4b25a83c57a10a1b96b6a28691f223 | Shell | typetests/guava-typecheck | /build.sh | UTF-8 | 1,568 | 3.640625 | 4 | [] | no_license | #!/bin/bash
ROOT="$( cd "$(dirname "$0")"/.. ; pwd -P )"
# Required argument $1 is one of:
# formatter, interning, lock, nullness, regex, signature, nothing
# Fail the whole script if any command fails
set -e
## Build Checker Framework
(cd $ROOT && git clone --depth 1 https://github.com/typetools/checker-framework.git)
# This also builds annotation-tools and jsr308-langtools
(cd $ROOT/checker-framework/ && ./.travis-build-without-test.sh downloadjdk)
export CHECKERFRAMEWORK=$ROOT/checker-framework
## Obtain guava
(cd $ROOT && git clone --depth 1 https://github.com/typetools/guava.git)
if [[ "$1" == "lock" ]]; then
(cd $ROOT/guava/guava && mvn compile -P checkerframework-local -Dcheckerframework.checkers=org.checkerframework.checker.lock.LockChecker)
elif [[ "$1" == "nullness" ]]; then
(cd $ROOT/guava/guava && mvn compile -P checkerframework-local -Dcheckerframework.checkers=org.checkerframework.checker.nullness.NullnessChecker)
elif [[ "$1" == "misc" ]]; then
(cd $ROOT/guava/guava && mvn compile -P checkerframework-local -Dcheckerframework.checkers=org.checkerframework.checker.regex.RegexChecker,org.checkerframework.checker.interning.InterningChecker,org.checkerframework.checker.formatter.FormatterChecker,org.checkerframework.checker.signature.SignatureChecker)
elif [[ "$1" == "index" ]]; then
(cd $ROOT/guava/guava && mvn compile -P checkerframework-local -Dcheckerframework.checkers=org.checkerframework.checker.index.IndexChecker)
elif [[ "$1" == "nothing" ]]; then
true
else
echo "Bad argument '$1' to build.sh"
false
fi
| true |
e69ca801ffc22751ddcbdcc561408a92b00c87e7 | Shell | DLT1995/CaffeOnACL-Android | /model_download.sh | UTF-8 | 1,063 | 3.015625 | 3 | [] | no_license | #!/bin/bash
CAFFE_ON_ACL=CaffeOnACL
chmod a+x $CAFFE_ON_ACL/data/ilsvrc12/get_ilsvrc_aux.sh
chmod a+x $CAFFE_ON_ACL/scripts/download_model_binary.py
# download data
$CAFFE_ON_ACL/data/ilsvrc12/get_ilsvrc_aux.sh
# download AlexNet
$CAFFE_ON_ACL/scripts/download_model_binary.py $CAFFE_ON_ACL/models/bvlc_alexnet
# download GoogLeNet
$CAFFE_ON_ACL/scripts/download_model_binary.py $CAFFE_ON_ACL/models/bvlc_googlenet
# download SqueezeNet
SQUEEZE_NET_MODEL=$CAFFE_ON_ACL/models/SqueezeNet/SqueezeNet_v1.1/squeezenet_v1.1.caffemodel
if [ -s $SQUEEZE_NET_MODEL ]; then
echo "SqueezeNet model already exists, not getting it."
else
wget -c https://github.com/DeepScale/SqueezeNet/raw/master/SqueezeNet_v1.1/squeezenet_v1.1.caffemodel -O /tmp/squeezenet_v1.1.caffemodel.temp && mv /tmp/squeezenet_v1.1.caffemodel.temp $SQUEEZE_NET_MODEL
fi
# download MobileNet
if [ -d $CAFFE_ON_ACL/models/MobileNet ]; then
echo "MobileNet model already exists, not getting it."
else
git clone https://github.com/finley-/MobileNet-Caffe $CAFFE_ON_ACL/models/MobileNet
fi
| true |
fb24d6f43596cf534a6148ec2c7f7d44802ea494 | Shell | Peter5793/alx-system_engineering-devops | /0x0C-web_server/3-redirection | UTF-8 | 394 | 2.734375 | 3 | [] | no_license | #!/usr/bin/env bash
#Configure your Nginx server so that /redirect_me is
#redirecting to another page
sudo apt-get -y update
sudo apt-get -y install nginx
echo "Holberton School" > /var/www/html/inddex.nginx-debian.html
variable="rewrite ^/redirect_me https://www.youtube.com/watch?v=QH2-TGUlwu4 permanent;"
sed -i "19i $variable" /etc/nginx/sites-available/default
sudo service nginx restart
| true |
0264cb58eae2e4c0d9f46fa6675b1cc339c8a95b | Shell | offensivenomad/dotfiles | /rootrc/bash.d/go | UTF-8 | 276 | 2.6875 | 3 | [] | no_license | #!/bin/bash
install-go() {
curl https://dl.google.com/go/go1.13.5.linux-amd64.tar.gz -o /tmp/go1.13.5.linux-amd64.tar.gz
sudo tar -C /usr/local -xzvf ./tmp/go
}
export GOARCH=amd64
export GOOS=linux
export GOPATH="$HOME"/.go
export PATH=$PATH:/usr/local/go:"$GOPATH"/bin
| true |
ab0db124e1de453cb49daef856ab11c96d02d827 | Shell | s-yakoo/Bash | /hypo | UTF-8 | 1,638 | 2.84375 | 3 | [] | no_license | #!/bin/bash
var=$(grep "unknown" tools_all_names.clstr | grep -c "#vibrio#interprot#"
grep "unknown" tools_all_names.clstr | grep -c "#firmicutes#interprot#"
grep "unknown" tools_all_names.clstr | grep -c "#bacteroides#interprot#"
grep "unknown" tools_all_names.clstr | grep -c "#vibrio#rast#"
grep "unknown" tools_all_names.clstr | grep -c "#bacteroides#rast#"
grep "unknown" tools_all_names.clstr | grep -c "#firm#rast#"
grep "#hypothetical protein#" tools_all_names.clstr | grep -c "#ED#prokka"
grep "#hypothetical protein#" tools_all_names.clstr | grep -c "#firmicutes#prokka"
grep "#hypothetical protein#" tools_all_names.clstr | grep -c "#bacteroides#prokka"
grep "hypothetical protein" tools_all_names.clstr | grep -c "#vibrio#interprot#"
grep "hypothetical protein" tools_all_names.clstr | grep -c "#firmicutes#interprot#"
grep "hypothetical protein" tools_all_names.clstr | grep -c "#bacteroides#interprot#"
grep "hypothetical protein" tools_all_names.clstr | grep -c "#vibrio#rast#"
grep "hypothetical protein" tools_all_names.clstr | grep -c "#firm#rast#"
grep "hypothetical protein" tools_all_names.clstr | grep -c "#bacteroides#rast#")
### this puts the output of the command (which is only the sum value) into the variable called var
echo $var | awk '{print "vibrio_interpro=",$1 += $10,"\n","firmicutes_interpro=", $2 += $11,"\n","bacteroides_interpro=",$3 += $12,"\n", "vibrio_rast=", $4 += $13,"\n","firm_rast=", $6 += $14, "\n", "bacteroides_rast=", $5 += $15, "\n", "vibrio_prokka=", $7, "\n", "firm_prokka=", $8, "\n", "bacteroides_prokka=",$9}' > hypothetical_counts.txt
cat hypothetical_counts.txt
| true |
e7f86552f57d9ee458bcdb06104430b1731c7152 | Shell | Yethal/tidal-offline-adder | /downloader.sh | UTF-8 | 324 | 2.625 | 3 | [
"MIT"
] | permissive | #!/bin/sh
source "$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )/functions.sh"
IFS='
'
#sanity checks
checkDep adb
checkDep xmllint
checkDevice
checkTidal
#app launch
launchTidal
openMyCollection
openAlbums
while true; do
for x in `getOptions`; do downloadAlbum $x; done
scrollAlbums
done
| true |
ecc91ee7bcf66e7894cc871792ad61c8280d8d03 | Shell | chenbk85/easyScripts | /get_bad_ip.sh | UTF-8 | 1,179 | 3.515625 | 4 | [] | no_license | #!/bin/sh
[ -s /etc/53kf.cfg ] && source /etc/53kf.cfg
IPTABLE="/sbin/iptables"
OLD_FILE="/tmp/.old_bad_ip"
NEW_FILE="/tmp/.new_bad_ip"
FILE="/etc/bad_ip"
cd $NGINX_LOG
if [ -e $OLD_FILE ];then
awk '/GET \/webCompany\.php HTTP/ {print $1}' access.log|sort|uniq > $NEW_FILE
diff -q $OLD_FILE $NEW_FILE
if [ $? = 1 ];then
while read IP;do
$IPTABLE -t nat -I PREROUTING -s $IP -j DROP
done < $NEW_FILE
cat $NEW_FILE >> $FILE
sort $FILE|uniq > /tmp/.bad_ip_tmp
mv -f /tmp/.bad_ip_tmp $FILE
mv -f $NEW_FILE $OLD_FILE
echo "Web was attacked at `date`" >> /var/log/53kf/web_attacked.log
sed -r -i '/GET \/webCompany\.php HTTP/d' access.log
fi
else
awk '/GET \/webCompany\.php HTTP/ {print $1}' access.log|sort|uniq > $OLD_FILE
if [ -s $OLD_FILE ];then
while read IP;do
$IPTABLE -t nat -I PREROUTING -s $IP -j DROP
done < $OLD_FILE
cat $OLD_FILE >> $FILE
sort $FILE|uniq > /tmp/.bad_ip_tmp
mv -f /tmp/.bad_ip_tmp $FILE
sed -r -i '/GET \/webCompany\.php HTTP/d' access.log
fi
fi
| true |
29443556e64eddb850cfe02d8b1532ccfb20c56a | Shell | Seagate/cortx-motr | /utils/spiel/m0_filesystem_stats | UTF-8 | 7,937 | 3.15625 | 3 | [
"Apache-2.0"
] | permissive | #!/usr/bin/env bash
#
# Copyright (c) 2020 Seagate Technology LLC and/or its Affiliates
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# For any questions about this software or licensing,
# please email opensource@seagate.com or cortx-questions@seagate.com.
#
#
#
# Script to calculate cluster size.
#
# Usage : ${SCRIPT_NAME}
#
# RETURN :
# 0 : SUCCESS
# 1 : System Error
# 2 : Client endpoint busy
# 3 : m0spiel command timed out
#
# On Success returns
# free space <int>
# available space <int>
# total space <int
# services total <int
# services replied <int
#
# Author : Yeshpal Jain
# email : yeshpal.jain@seagate.com
#
#
#set -eu
#set -x
export PS4='+ ${FUNCNAME[0]:+${FUNCNAME[0]}():}line ${LINENO}: '
M0_SRC_DIR=`readlink -f ${BASH_SOURCE[0]}`
M0_SRC_DIR=${M0_SRC_DIR%/*/*/*}
echo $M0_SRC_DIR
. $M0_SRC_DIR/utils/functions # sandbox_init, report_and_exit
SCRIPT_NAME=`echo $0 | awk -F "/" '{print $NF}'`
STATUS_FILE=/tmp/get_size_client$USER
SAVEIFS=$IFS
TIMEOUT=10
lnet_nids=$(m0_local_nid_get)
server_addr=""
client_addr=""
profile_addr=""
systemd=0
declare libmotr_path="/usr/lib64/libmotr.so"
declare m0spiel_path="/usr/bin/m0spiel"
declare consul_path="/usr/bin/consul"
declare python3_path="/usr/bin/python3"
consul_query_args="kv get -recurse m0conf"
consul_query_cmd="$consul_path $consul_query_args"
motr_conf_file="/etc/sysconfig/motr"
[ -d /etc/sysconfig ] || motr_conf_file="/etc/default/motr"
exit_with_error()
{
msg=$1
exit_code=$2
>&2 echo -e $msg
[[ -e $STATUS_FILE ]] && rm $STATUS_FILE
exit $exit_code
}
get_bin_path() {
bin_name="$1"
eval path_var="${bin_name}""_path"
eval file_path=\${${bin_name}_path}
if [ ! -e ${file_path} ] ; then
declare $path_var=$(which $bin_name)
eval file_path=\${${bin_name}_path}
fi
# return file_path string, Don't add any other echo statement
# in this method.
echo "$file_path"
}
check_bin_path() {
bin_name="$1"
eval file_path=\${${bin_name}_path}
if [ ! -e ${file_path} ] ; then
exit_with_error "ERROR: $bin_name not found" 1
fi
}
check_lib_path() {
arg1=$1
lib_name="${arg1%.*}"
eval path_var=\${${lib_name}_path}
if [ ! -e ${path_var} ] ; then
exit_with_error "ERROR: $lib_name not found" 1
fi
}
fs_stats_fetch() {
/usr/bin/timeout --foreground $TIMEOUT $python3_path $m0spiel_path $M0_SPIEL_OPTS <<EOF
spiel.rconf_status = 0
def handle_sigterm(signalNumber, frame):
if spiel.rconf_status:
spiel.rconfc_stop()
sys.exit(1)
return
if spiel.cmd_profile_set(str(Fid($M0_PROFILE_ID))):
sys.exit('cannot set profile')
spiel.signal_nr = signal.SIGTERM
spiel.signal_cb = handle_sigterm
spiel.register_signal()
if spiel.rconfc_start():
sys.exit('cannot start rconfc')
else:
spiel.rconf_status = 1
fs_stats = FsStats()
rc = spiel.filesystem_stats_fetch(fs_stats)
if rc != 0:
sys.exit('Error: filesystem stats fetch: \
(status {0})'.format(rc))
spiel.rconfc_stop()
spiel.rconf_status = 0
print(" free space {0:>20}".format(fs_stats.fs_free_disk))
print(" available space {0:>20}".format(fs_stats.fs_avail_disk))
print(" total space {0:>20}".format(fs_stats.fs_total_disk))
print(" services total {0:>20}".format(fs_stats.fs_svc_total))
print(" services replied {0:>20}".format(fs_stats.fs_svc_replied))
EOF
rc=$?
if [ $rc -ne 0 ] ; then
[[ $rc -ge 124 ]] && exit_with_error "m0spiel command timedout" 3
exit_with_error "m0spiel command exit with error:$rc" $rc
fi
}
get_hostname()
{
host=" "
if [[ -f /etc/salt/minion_id ]] ; then
host=$(cat /etc/salt/minion_id)
fi
if [[ -z "$host" ]] ; then
host=$(hostname --fqdn)
fi
echo $host
}
# Get endpoints of local node's processes that run service(s) of given type.
get_endpoints_of() {
local svc_type=$1
$consul_query_cmd |
awk -F/ -v host=$(get_hostname) -v svc_type=$svc_type '
$3 != host { next }
$6 ~ /^endpoint:/ { sub(/^endpoint:/, "", $6); endpoints[$5] = $6 }
$6 == "services" && match($7, "^" svc_type ":") { match_p[$5] = 1 }
END { for (k in match_p) print endpoints[k] }
'
}
get_ep_status()
{
client_ep=$1
# return endpoint running status from hctl,
# Dont add any other echo statement in this method.
echo "$(hctl status | grep $client_ep | sed 's/.*\[\([^]]*\)\].*/\1/g' | sed 's/^[[:space:]]*//g')"
}
main()
{
pid=$$
python3_path=$(get_bin_path python3)
m0spiel_path=$(get_bin_path m0spiel)
check_bin_path python3
check_bin_path m0spiel
if [ ! -s $libmotr_path ] ; then
[[ -r $motr_conf_file ]] && source $motr_conf_file
[[ -n "$MOTR_DEVEL_WORKDIR_PATH" ]] && \
libmotr_path=$MOTR_DEVEL_WORKDIR_PATH/motr/.libs/libmotr.so
[[ ! -s $libmotr_path ]] && exit_with_error "libmotr Not Found" 1
fi
if [ -z "$server_addr" ] ; then
consul_path=$(get_bin_path consul)
check_bin_path consul
server_addr=$(get_endpoints_of ha | tail -1)
fi
if [ -z "$profile_addr" ] ; then
profile_addr=$($consul_query_cmd | grep profiles: | sed -n -e 's/^.*\(profiles:\)/\1/p' | awk '{print $1}'| sed 's/^[^:]*://' | sed 's/:/,/')
fi
if [ -z "$client_addr" ] ; then
local cmd="tail -2"
[[ $systemd == 1 ]] && cmd="tail -1"
client_addr=$(get_endpoints_of m0_client_other | $cmd | head -1)
fi
M0_SPIEL_OPTS="-s $server_addr -l $libmotr_path --client=$client_addr"
M0_PROFILE_ID=$profile_addr
if [[ -z "$server_addr" || -z "$libmotr_path" || -z "$client_addr" || -z "$profile_addr" ]]; then
exit_with_error "Invalid Arguments" 1
fi
touch $STATUS_FILE
exec {FD}<>$STATUS_FILE
#Wait for $TIMEOUT to acquire the lock
if ! flock -x -w $TIMEOUT $FD; then
[[ -e $STATUS_FILE ]] && rm $STATUS_FILE
exit 2
fi
#Lock acquired, below command would be executed exclusively to current process
fs_stats_fetch
[[ -e $STATUS_FILE ]] && rm $STATUS_FILE
}
function usage() {
cat << EOF
Usage: $SCRIPT_NAME [options]
-c, --clent client endpoint address
-s, --server server endpoint address
-p, --profile profile endpoint address
-l, --libmotr_path libmotr path
-t, --timeout timeout in seconds
-h, --help this help
Example:
$SCRIPT_NAME
-s ${lnet_nids}:12345:1:1
-c ${lnet_nids}:12345:1:4
-p 0x7000000000000001,0x1e
-l $libmotr_path
-c, -s, -l and -p are optional arguments
RETURN :
0 : SUCCESS
1 : System Error
2 : endpoint busy
3 : m0spiel command timed out
Note: $SCRIPT_NAME can be executed only by privileged user
EOF
}
function check_arg_value() {
[[ $# -gt 1 ]] || {
exit_with_error "Incorrect use of the option $1\nUse --help option" 1
}
}
while [[ $# -gt 0 ]]; do
case $1 in
-c| --client)
check_arg_value $1 $2
client_addr="$2"
shift
;;
-s| --server)
check_arg_value $1 $2
server_addr="$2"
shift
;;
-p| --profile)
check_arg_value $1 $2
profile_addr="$2"
shift
;;
-t| --timeout)
check_arg_value $1 $2
TIMEOUT=$2
shift
;;
-l| --libmotr_path)
check_arg_value $1 $2
libmotr_path=$2
shift
;;
-d| --daemon)
systemd=1
;;
-h| --help)
usage
exit 1
;;
esac
shift
done
main
exit 0
| true |
0d5162d014acf1314203c94ef3f99ddb6d47ca88 | Shell | jbruceh88/scripts | /gitHooks/pre-commit.sample | UTF-8 | 1,759 | 3.890625 | 4 | [] | no_license | #!/bin/bash
#Redirect output to stderr.
exec 1>&2
# Color codes
red=`tput setaf 1`
green=`tput setaf 2`
blue=`tput setaf 4`
reset=`tput sgr0`
keywords=(print_r var_dump console\.log)
#put key words together for grep
keywords_for_grep=$(printf "|%s" "${keywords[@]}")
keywords_for_grep=${keywords_for_grep:1}
#debugging error counter
debug_found=0
# Ignore the following files.
exclude_dir_and_ext='\/features\/|\/contrib\/|\/devel\/|\/libraries\/|\/vendor\/|\.info$|\.png$|\.gif$|\.jpg$|\.ico$|\.patch$|\.htaccess$|\.sh$|\.ttf$|\.woff$|\.eot$|\.svg$'
# Check for debugging functions
# List all files added to commit excluding the exceptions
files_changed=`git diff-index --diff-filter=ACMRT --cached --name-only HEAD -- | egrep -v $exclude_dir_and_ext`
if [ -n "$files_changed" ]
then
for FILE in $files_changed ; do
for keyword in "${keywords[@]}" ; do
# find the pattern
pattern="^\+(.*)?$keyword(.*)?"
result_for_file=`git diff --cached $FILE | egrep -x "$pattern"`
if [ ! -z "$result_for_file" ]
then
if [ $debug_found -eq 0 ]
then
echo "${red}"
echo "# Debugging function(s):"
echo "------------------------${reset}"
fi
debug_found=1
echo "Debugging function" $keyword
git grep -n $keyword $FILE | awk '{split($0,a,":");
printf "\tfound in " a[1] " on line " a[2] "\n";
}'
fi
done
done
fi
errors_found=$((debug_found))
#stop the commit
if [ $errors_found -eq 0 ]
then
#echo "${green}"
#echo "Your Code is clean from debug and has been committed"
echo base64 -d <<<"@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@&,@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@(..&@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@*...#@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@......%@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@(.&@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@.......,@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@&,...@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@........./@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@(.....,@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@...........(@@@@@@@@@@@@@@@@@@@@@@@@@@@#,.......*@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@.............%@@@@@@@@@@@@@@@@@@@@@@@/..........#@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@..............*@@@@@@@@@@@@@@@@@@@@/............&@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@&................*@@@@@@@@@@@@@@@@*.............,@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@%..................&@@@@@@@@@@@@,...............(@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@#...................(@@@@@@@@@*.................&@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@/.........,*(%&&@@@@@@@@@@@@,..................,@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@,....,/@@@@@@@@@@@@@@@@@@@@@@@@%*............../@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@.,#@@@@&/*%@@@@@@@@@@@@@@@@%**#@@@@%,..........%@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@*.,/#&@@@@@@@@@@@@@@@@@@@@@@@@@@&@@@#/&@@@@%*............../&@@@@&/#@@@/........@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@*........,*#&@@@@@@@@@@@@@@@@@@@@@@@@#*......,*(#####(/*.......,(@@@@@@@(,....*@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@,..................*/#&@@@@@@@@@#,.....*&@@@@@&%%%%%&@@@@@@&/,....,%@@@@@(...#@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@,....................../@@@@*...../@@@@%,,,,,,,,,,,,,,,,,*%@@@&,....,&@@@&..&@@@@@@@@@@@@@@@@@@@@@*...%@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@*....................(@@@*....*&@@@#,,,,,,,,,,,,,,,,,,,,,,,,#@@@/....,%@@&.&@@@@@@@@@@@@@@@%/*,......,@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@,..................%@@@@&%&@@@%,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,#@@@@@@@@@@&.........................&@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@,................#@@,,/(#(,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,***,,@@#....................../@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@.............../@@,,,,,,,,,,***,,,,,,,,,,,,,,,,,,,,,,,,,,***,,,,,,,,,,*@@*....................&@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@%.............,@@/,,,,*&@@@@@@@@@@@@@#,,,,,,,,,,,,,(@@@@@@@@@@@@@&*,,,,&@&..................*@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@(............%@&,,#@@@@&@@@        ,%@@&,,,,,,,&@@@*      #@@@@#(@@@(,*@@*................&@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@,...........@@(,@@@.,@@@@#           #@@,,,,*@@(          @@@@@(  &@%,@@%..............(@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@........../@@,@@,   /@,*.            /@@*,/@@             //      %@%(@@............,@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@#.........%@&&@(                      &@&,@@*                      @@*@@*..........#@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@*........@@#@@.                      %@@*@@                       @@*&@%......../@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@#.......*@@*@@                       &@&/@@                       @@*#@@......*@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@#,..........(@@,&@/                      @@#,@@.                     .@@,/@@....,@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@&/,..............%@&,*@@                     #@&,,#@&                     &@(,*@@,...,%@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@&*....................&@#,,*@@%                  &@&,,,,(@@.                  @@#,,,@@*......,#@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@#,........................@@(,,,,#@@@*             %@@/,,,,,,,&@@#             /@@@*,,,,@@/..........,#@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@#,.......................,@@*,,,,,,,(@@@@@%####&@@@&*%(,,,,,,#%,*&@@@@&%###&@@@@(,,,,,,,@@(................,(%@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@#,...................,@@*,,,,*,,,,,,,/#%%%#/,,,,(@@,,,,,,@@*,,,,,*/#%%%(*,,,,,,,,,,,@@(....................,#@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@/................*@@,,,,%@@@%/,,,,,,,,*#&,,,*@@,,,,,,@@*,,,,,,,,,,,,,&@@@@@@@@@#@@(.................,%@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@#,............*@@,,,,,,*%@@@@@@@@@@@@&,,,,@@*,,,,*@@,,,,,,,,,,,,,,,,,,,,,,/&@@@(...............*@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@/.........*@@,,,,(&@@@@@#,,,,,,,,,,,,,%@%,,,,#@&,,,,,,,,*&@@@@@@@@%,,,,,,@@(............*%@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@&.........*@@*@@@@(/***(@%,,,,,,,,,,,,,@@/,,,@@/,,,,#@@@@@&%%%%%%@@@(,,,,*@@,.........#@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@#...........*@@@&,,,,*(###(*,,,,,,,,,,,,,,@@@#@@%/&@@@@(,@@%%%%%%%%%%@@*,,,,&@(......,&@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@&/.............(@@,,,,@@@@@@@@@@@@@@@&(*,,,,*(@@@@@@@#*@@#./@@%%%%%%%%%%@@#,,,,&@(....,&@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@(...............,@@,,,,@@&%%%%%%%%%@@/*(@@@@@@@@#/,%@@,.#@@@@@@%%%%%%%%%%%@@/,,,,@@*...#@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@/................./@@,,,*@@%%%%%%%%%%&@@#@@@@..#@@@/,@@@@@@@%%%%%%%%%%%%%%%&@@,,,,*@@....%@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@%,................(@@@@@,,,,@@&%%%%%%%%%%%&&&%&@@@@&%@@@@&%%%%%%%%%%%%%%%%%%%&@@#,,,,@@@@@(...(@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@*.............(@@%,,%@&,,,*@@&%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%@@&,,,,@@#,,#@@(...,@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@&/,.......@@*,,,,&@&,,,*@@@%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%&@@&,,,*@@@*,,,,@@(....,%@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@%,...&@/,,,,/@@@/,,,#@@%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%@@@,,,,%@@@@,,,,,#@%.......,%@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@#,/@@*,,,,@@@@&,,,/@@&%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%&@@#,,,*@@%(@@,,,,,&@/........../@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@*.#@@/,,,@@#*@@@#,,#@@@%%%%%%%%%%%%%%%%%%%%%%%%%%%&&&%%%@@&,,,,,@@,,&@%,,,,#@@.....*#&@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@.../@@@*,(@@,,,%@@&,,#@@@&%%%%%%&&%%%%%%%%%%&@@%@@@%@@@@@*,,,,,,,,,,@@*,,(@@&,%@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@(.....,@@@@@@(,,,,*&/,,,,&@@@@&&@@&@@%&@@@@&@@#&@@@,,&@@*,,,,,,,,,,,#@@@@@@&,.*@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@.........,%@@@,,,,,,,,,,,,,,(@@@@@%/@@@(.,@@@/.*#@@@@&,,,,,,,,,,,,,,@@#/,......@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@,............&@&,,,,,,,,,,%@@&/@@*/%@@@@@@@@@@@@@%(,,,*/,,,,,,,,,,,,&@&........./@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@,.............,@@(,,,,,,,,,,,%@@@@#*@@%....(@&,,,,,*%@@@@,,,,,,,,,,,/@@*..........@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@/...............*@@/,,,,,,,,,,,,,,&@@@@@&...&@@@@@@@@&/,,,,,,,,,,,,,,@@/...........(@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@%..*@@&,,,,,,,,,,,,,,,,,,%@@@@@%,,,,,,,,,,,,,,,,,,,,,,@@(,&@#*........&@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@*...,@@@,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,#@@(.,@@@@@@@@@/*@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@&....../@@%,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,@@@*...@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@*....*%@@@@@(,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,#@@@@*...&@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@(%@@@@@@@@@@@@*,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,*@@@@@@@@@(%@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@%,,,,,,,,,,,,,,,,,,,,,,,,,,,,,#@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@#,,,,,,,,,,,,,,,,,,,,,/&@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@%#///////#%@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@"
echo "${rest}"
else
echo "${red}"
echo "degugging found - please fix before commiting"
echo "${reset}"
exit 1
fi
| true |
77575ecd89d02ba09bf034ae08ec90f2e3a42dd6 | Shell | fcenobi/hypersocket-vpn | /client-network/src/main/resources/hs-socket-redirector | UTF-8 | 1,642 | 4.40625 | 4 | [] | no_license | #!/bin/bash
#
# Simple front-end to iptables to redirect a destination to the client service
#
# By default, the script DELETES all the hypersocket added rules, use --add as the
# first argument to add a new rule.
#
# Usage:0
#
# [--add] <sourceIpOrHostname> <sourcePort> <destinationIp> <destinationPort>
# The comment indicating Hypersocket temporary rules. This might save someone
# accidentally saving firewall configuration while HS is running, and also
# helps us find the rules to delete (cleaning up on the next connection
# if the client crashes for example)
COMMENT="#HYPERSOCKET-CLIENT-TEMPORARY-RULE-DO-NOT-SAVE"
apply_rules() {
status=0
# Apply PREROUTING rule
if ! iptables -t nat -"${5}" PREROUTING -p tcp -d "${1}" --dport "${2}" -m comment --comment "${COMMENT}" -j DNAT --to-destination "${3}":"${4}" ; then
echo "$0: PREROUTING rule ${1}:${2} -> ${3}:${4} failed." >&2
status=1
fi
# Because we are redirecting to localhost, OUTPUT chain is also needed
if ! iptables -t nat -"${5}" OUTPUT -p tcp -d "${1}" --dport "${2}" -m comment --comment "${COMMENT}" -j DNAT --to-destination "${3}":"${4}" ; then
echo "$0: OUTPUT rule ${1}:${2} -> ${3}:${4} failed." >&2
status=1
fi
return ${status}
}
# Insert rules by default
option=D
# Parse any options
if [ "$1" == "--add" ]; then
shift
option=I
elif [ "$1" == "--clear" ]; then
shift
option=C
fi
# Add the new rule
if [ "${option}" = I ]; then
apply_rules $* D >/dev/null 2>&1
apply_rules $* ${option}
elif [ "${option}" = C ]; then
iptables-save | grep -v "${COMMENT}" | iptables-restore
elif [ "${option}" = D ]; then
apply_rules $* D
fi
| true |
697eab2ce5d10fa422932db93835016bb45d1c22 | Shell | jahkeup/openstack-containers | /shared/preinstall.sh | UTF-8 | 1,118 | 2.8125 | 3 | [] | no_license | #!/usr/bin/env bash
# This script prepares a common openstack env for isolated services
# This script is meant for use with Dockerfile and images.
# Install and configure SSH + Common Deps
apt-get install -y openssh-server sudo traceroute dnsutils less vim net-tools \
python-MySQLdb python-pip telnet
# Make sshd login behave properly
sed -i 's/session required pam_loginuid.so/#session required pam_loginuid.so/' /etc/pam.d/sshd
mkdir /var/run/sshd
# Add remote user
useradd cloud -m -s /bin/bash
echo 'cloud:$6$I0AFz22S$.8ffn3MMC43/2RvCABYIO5IEBscA0tO2R3JYPStYOoOC6pfIRS1ybpT0ReGrv6y1pzDY9b/lO.jjf08SrsU0f1' | chpasswd -e
echo "cloud ALL=NOPASSWD: ALL" >> /etc/sudoers.d/cloud_user
# Create groups
groupadd -g 220 keystone
groupadd -g 221 nova
groupadd -g 222 neutron
groupadd -g 223 cinder
groupadd -g 224 glance
# Crea†e users
useradd -u 220 -g 220 -d /var/lib/keystone keystone
useradd -u 221 -g 221 -d /var/lib/nova nova
useradd -u 222 -g 222 -d /var/lib/neutron neutron
useradd -u 223 -g 223 -d /var/lib/cinder cinder
useradd -u 224 -g 224 -d /var/lib/glance glance
| true |
fcac869f9b1aa45005cc70ffb22345284b15de79 | Shell | december454/Bash-Scripting | /Tutorials/learnShell-Basics/shellFunctions | UTF-8 | 808 | 4.125 | 4 | [] | no_license | #! /bin/bash
#Like other programming languages, bash allows for the implementation of functions.
#These subroutines are convenient for repeated tasks. They use the following formats:
#function funcName {
# command
#}
#funcname() [
# command
#}
#funcName{
#command
#}
#Functions can be called by writing their names. A function call is equivelent to a command.
#Parameters can also be passed to a function. Within the funtion, the first parameter is 41, the second is $2, and so on.
function functionB {
echo "Called functionB"
}
function functionA {
echo "You called functionA with parametr $1"
}
function adder {
echo "$(($1 + $2))"
}
#Function calls:
functionA "Hello There" #Calling function a with a parameter.
functionB #Calling functionB.
adder 4 8 #Calling adder with a set of parameters.
| true |
39c9ad861bd73fe329349190379889204c65fbd0 | Shell | acocalypso/madrom | /device/khadas/kvim2/mkern.sh | UTF-8 | 1,220 | 3.25 | 3 | [] | no_license | #!/bin/bash -ex
# Run from top of kitkat source
#ROOTFS=$1
ROOTFS="out/target/product/kvim2/ramdisk.img"
PREFIX_CROSS_COMPILE=/opt/toolchains/gcc-linaro-4.9.4-2017.01-x86_64_aarch64-linux-gnu/bin/aarch64-linux-gnu-
if [ "$ROOTFS" == "" -o ! -f "$ROOTFS" ]; then
echo "Usage: $0 <ramdisk.img> [m]"
exit 1
fi
KERNEL_OUT=out/target/product/kvim2/obj/KERNEL_OBJ
#mkdir -p $KERNEL_OUT
if [ ! -f $KERNEL_OUT/.config ]; then
make -C common O=../$KERNEL_OUT kvim2_defconfig ARCH=arm64 CROSS_COMPILE=$PREFIX_CROSS_COMPILE
fi
make -C common O=../$KERNEL_OUT ARCH=arm64 -j6 CROSS_COMPILE=$PREFIX_CROSS_COMPILE modules Image.gz
if [ "$2" != "m" ]; then
# make -C common O=../$KERNEL_OUT kvim2.dtd ARCH=arm64 CROSS_COMPILE=$PREFIX_CROSS_COMPILE
make -C common O=../$KERNEL_OUT kvim2.dtb ARCH=arm64 CROSS_COMPILE=$PREFIX_CROSS_COMPILE PARTITION_DTSI=partition_mbox.dtsi
fi
if [ "$2" != "m" ]; then
out/host/linux-x86/bin/mkbootimg --kernel common/../$KERNEL_OUT/arch/arm64/boot/Image.gz \
--base 0x0 \
--kernel_offset 0x1080000 \
--ramdisk ${ROOTFS} \
--output ./out/target/product/kvim2/boot.img
ls -l ./out/target/product/kvim2/boot.img
echo "boot.img done"
fi
| true |
bda5539cbefd73a32f30c22b3f1c4fa991213827 | Shell | randstuff/vcure | /vcure.sh | UTF-8 | 3,117 | 3.8125 | 4 | [] | no_license | #!/bin/bash
RootDir="$HOME/data"
ArchivedDir="archived"
Trash="trash"
declare -a arr=("btceur" "xrpeur" "ltceur" "etheur")
#declare -a arr=("btceur" "xrpeur")
shopt -s dotglob
###############################################################################
Collect ()
{
n=0
while [ 42 ]; do
for i in "${arr[@]}" ; do
GetData $i
sleep 1
if ! (( n % 2048)); then
Archive
fi
((n++))
done
sleep 1
done
}
GetData ()
{
cDate=`date '+%y%m%d-%H%M%S'`
mkdir -p $RootDir/$1/
echo "Current call : https://www.bitstamp.net/api/v2/ticker/$1/"
echo "Dumped to : " $RootDir/$1/$cDate.json
curl -XGET https://www.bitstamp.net/api/v2/ticker/$1/ >> $RootDir/$1/$cDate.json
echo "\r" >> $RootDir/$1/$cDate.json
}
###############################################################################
Archive ()
{
mkdir ${ArchivedDir}
for cVirtMoney in "${arr[@]}" ; do
cDir=$RootDir"/"$cVirtMoney"/"
echo "Processing "$cVirtMoney " at " $cDir
for d in $(ls -f $cVirtMoney | cut -d "-" -f1 | grep -v -E "(\.)|(\..)" | sort -u) ; do
cDay=`echo $d | cut -d "/" -f1`
cInputPath="./"$cVirtMoney"/"$d
cOutputPath="./"${ArchivedDir}"/"${cVirtMoney}"/"${cDay}"/"
mkdir -p $cOutputPath
mv -vf $cInputPath* $cOutputPath
echo " [" $cInputPath"*] files archived at " ${cOutputPath}
done
done
}
###############################################################################
CleanUp ()
{
for i in "${tmp[@]}" ; do
mv $i $Trash
done
}
ReIndex ()
{
mkdir -p "./"$Trash
for cVirtMoney in "${arr[@]}" ; do
mkdir -p "./"$cVirtMoney
done
for cVirtMoney in "${arr[@]}" ; do
n=0
for f in $(find ./$ArchivedDir -name "*.json" ); do
echo $f
mv $f $RootDir/$cVirtMoney/
tmp[$n]=$f
if ! (( n % 420)); then
CleanUp $tmp
sleep 180
fi
((n++))
done
done
}
###############################################################################
die()
{
local _ret=$2
test -n "$_ret" || _ret=1
test "$_PRINT_HELP" = yes && print_help >&2
echo "$1" >&2
exit ${_ret}
}
begins_with_short_option()
{
local first_option all_short_options
all_short_options='th'
first_option="${1:0:1}"
test "$all_short_options" = "${all_short_options/$first_option/}" && return 1 || return 0
}
###############################################################################
print_help ()
{
printf "%s\n" "vcure v0.1 help : "
printf 'Usage: %s [option] or [-h|--help]\n' "$0"
printf "\n"
printf "\t%s\n" "-a,--archive: Archive collected data"
printf "\t%s\n" "-c,--collect: Collected the data"
printf "\t%s\n" "-r,--reindex: Force reindex archived data"
printf "\t%s\n" "-h,--help: Prints help"
printf "\n"
}
parse_commandline ()
{
while test $# -gt 0
do
_key="$1"
case "$_key" in
-a|--archive)
Archive
exit 0
;;
-c|--collect)
Collect
exit 0
;;
-r|--reindex)
ReIndex
exit 0
;;
-h|--help)
print_help
exit 0
;;
*)
_PRINT_HELP=yes die "FATAL ERROR: Got an unexpected argument '$1'" 1
;;
esac
shift
done
}
parse_commandline "$@"
| true |
4f46d88477871ff65581be20722f5d5a4f1a8e80 | Shell | rainwoodman/conda-channel-rainwoodman | /recipe-templates/ngspice/build.sh | UTF-8 | 299 | 2.75 | 3 | [] | no_license | #!/bin/bash
set -x
if [[ $OSTYPE == darwin* ]]; then
export CFLAGS="-headerpad_max_install_names"
export LDFLAGS="${LDFLAGS} -headerpad_max_install_names"
export CXXFLAGS="$CFLAGS"
fi
./configure --prefix=$PREFIX --with-x --with-readline --enable-static
make -j$CPU_COUNT
make install
| true |
0e64ee6a37125f00999b96cd361d242e48120663 | Shell | imclab/politicalframing | /aws.sh | UTF-8 | 3,331 | 3.25 | 3 | [] | no_license | # Dokku Setup on EC2 Instructions
# Because our AWS instance is associated with an elastic IP address, the PFURL should persist
# across deleting and re-creating the instance given the elastic IP is reassociated.
# Please note when doing anything that may change the instance's public IP (e.g. re-creating
# or upgrading) you will recieve an error "WARNING: REMOTE HOST IDENTIFICATION HAS CHANGED!".
# It will be accompanied with a line in known_hosts to remove such as:
# Offending RSA key in /Users/atul/.ssh/known_hosts:18
# Simply delete this line and repeat the command.
# Remember that the PEM file must have permissions 400.
# chmod 400 politicalframing.pem
# Attempted to create a profile.d folder with environment variables but that didn't seem to work.
export PFURL=aljohri.com
export PFPEM=~/Desktop/politicalframing.pem
export APP=alpha
alias pf="ssh -i $PFPEM ubuntu@$PFURL"
function pflogs() {
if [ -z "$1" ]; then
echo "missing app name"
echo "usage: pflogs app"
return -1
fi
pf "dokku logs $1 -t"
}
function pfcreate() {
if [ -z "$1" ]; then
echo "missing app name"
echo "usage: pfcreate app"
return -1
fi
git remote add $APP "dokku@$PFURL:$1"
}
function pfpush() {
if [ -z "$1" ]; then
echo "missing app name"
echo "usage: pfush app"
return -1
fi
if [ "$1" = "-h" ]; then
echo "usage: pfush app"
echo "note: if 'app' is a branch in git"
echo "pfpush will push the branch named 'app' to aws"
echo "otherwise, it will push the master branch"
return -1
fi
if ! git remote | grep -qi $1; then
echo "$1 is not a remote of this repo"
echo "check git remote -v"
return -1
fi
if git branch | grep -qi $1; then
git push $1 $1:master
else
git push $1 master
fi
}
pf "echo 'export PFURL=$PFURL' >> ~/.bashrc"
pf "wget -qO- https://raw.github.com/progrium/dokku/v0.2.1/bootstrap.sh | sudo bash"
pf "export PFURL=$PFURL; sudo sh -c 'echo $PFURL > /home/dokku/VHOST'"
pf "sudo git clone https://github.com/statianzo/dokku-shoreman.git /var/lib/dokku/plugins/dokku-shoreman"
pf "sudo git clone https://github.com/Kloadut/dokku-pg-plugin /var/lib/dokku/plugins/postgresql"
pf "sudo git clone https://github.com/luxifer/dokku-redis-plugin /var/lib/dokku/plugins/redis"
# pf "sudo git clone https://github.com/jeffutter/dokku-postgresql-plugin.git /var/lib/dokku/plugins/postgresql"
# pf "sudo git clone https://github.com/jeffutter/dokku-mongodb-plugin.git /var/lib/dokku/plugins/mongodb"
pf "sudo dokku plugins-install"
cat ~/.ssh/id_rsa.pub | pf "sudo sshcommand acl-add dokku progrium"
pf "dokku config:set $APP HEROKU=1"
pf "dokku config:set $APP C_FORCE_ROOT=true"
pf "sudo dokku postgresql:create $APP"
pf "sudo dokku redis:create $APP"
pf "dokku run $APP python manage.py createdb"
# 1 GB swap space
# pf "sudo /bin/dd if=/dev/zero of=/var/swap.1 bs=1M count=1024"
# pf "sudo /sbin/mkswap /var/swap.1"
# pf "sudo /sbin/swapon /var/swap.1"
# Information
# EC2 Instance AMI: ami-ef795786
# EC2 Instance AMI url: https://console.aws.amazon.com/ec2/home?region=us-east-1#launchAmi=ami-ef795786
# EC2 Instance Finder: http://cloud-images.ubuntu.com/locator/ec2/
# Search Parameters: Ubuntu 13.04 raring amd64 ebs us-east-1
# https://github.com/progrium/dokku/wiki/Recipes#specifying-a-custom-buildpack
| true |
26744764889d7a08818d4ed5cfa4e8e085275c9f | Shell | dafrito/scaf | /types.d/mit | UTF-8 | 658 | 3.875 | 4 | [
"MIT"
] | permissive | #!/bin/bash
PATH=/bin:/usr/bin
# Description: Generate a license file (defaults to LICENSE)
die() {
echo $* >&2
exit 1;
}
realname() {
if [ -n "$OWNER" ]; then
echo $OWNER
else
# Extract a name from the passwd file
grep "^`whoami`" /etc/passwd | cut -d: -f5
fi;
}
if [ $# = 0 ]; then
set LICENSE
fi;
for f in $*; do
mkdir -p `dirname $f`
if [ -e $f ]; then
echo "$f already exists, skipping."
else
cp $SCAFDATA/MIT.license $f || die
sed -i -re "s/@YEAR@/`date +%Y`/g" \
-e "s:@OWNER@:`realname`:g" \
$f;
fi;
done;
# vim: set ts=4 sw=4 et :
| true |
68faf436d64f7e1e9800a6f27015af8b3cd91779 | Shell | ParomovEvg/micro-courses | /kill.bash | UTF-8 | 121 | 2.90625 | 3 | [] | no_license | pids=$(ps aux | grep -i nodemon | grep -v grep | awk '{print $2}')
for pid in $pids
do
echo "$pid"
kill "$pid"
done | true |
cfc902ffd90a3d7799c1d806e186289001918cc1 | Shell | Caligone/highLowGameAlexaSkill | /deploy.sh | UTF-8 | 309 | 3.03125 | 3 | [
"MIT"
] | permissive | #!/bin/sh
die () {
echo >&2 "$@"
exit 1
}
zip -rq1 target.zip lib/ index.js node_modules/ package.json yarn.lock
[ "$#" -eq 1 ] || die "Usage: ./deploy.sh [arn]"
aws lambda update-function-code \
--function-name $1 \
--zip-file fileb://target.zip \
--region eu-west-1
rm -r target.zip
| true |
004bd1ca58b07f5fcab1ae0fe3ddd0930a712b43 | Shell | gerritschoe/TowerBuildingBaxter_EECS_206A | /start.sh | UTF-8 | 1,396 | 2.921875 | 3 | [] | no_license | #!/bin/sh
# First of all make sure you have created a link to the baxter.sh shell script:
# ln -s /scratch/shared/baxter_ws/baxter.sh
# Connect to the robot:
# ./baxter.sh [robotname].local
#./baxter.sh asimov.local
#./baxter.sh archytas.local
echo "-> Starting awsome game ->"
echo "-> Start Camera setup done"
# Activate camera
echo "Closing all cameras...."
rosrun baxter_tools camera_control.py -c left_hand_camera
rosrun baxter_tools camera_control.py -c right_hand_camera
rosrun baxter_tools camera_control.py -c head_camera
echo "Turning on right hand camera..."
#rosrun baxter_tools camera_control.py -o right_hand_camera
rosrun baxter_tools camera_control.py -o left_hand_camera
echo "<- StartCamera setup done"
# Enable Baxter:
#rosrun baxter_tools enable_robot.py -e
# Starting jointTrajectoryServer.sh
# Starting moveGroup.sh
echo "Starting main.launch"
roslaunch brain main.launch
#echo "<- Ending awsome game <-"
###############################################
# HOW TO SET UP THE SERVICES MANUALLY:
# close cameras and activate left hand camera
# rosrun baxter_tools enable_robot.py -e
# rosrun baxter_interface joint_trajectory_action_server.py
# roslaunch baxter_moveit_config move_group.launch # this one works on archytas, not on Asimov
# roslaunch ar_track_alvar webcam_track.launch
# roslaunch brain main.launch
echo "Reached the End of the start.sh file" | true |
1bc9d59b521ad92e5dd5fb6f371a4b1a6b0ba137 | Shell | djkormo/ContainersSamples | /Kubernetes/labs.play-with-k8s.com/kubernetes_start.sh | UTF-8 | 2,252 | 2.9375 | 3 | [] | no_license | #!/bin/bash -x
## Setup http://labs.play-with-k8s.com/
#
# Inspired heavily by: https://gist.github.com/jjo/78f60702fbfa1cbec7dd865f67a3728a
# Some dev-tools omitted, changes in parenthesis.
#
# Run with:
# bash -x <( curl -L url-to-raw-gist )
# this shell file
# https://raw.githubusercontent.com/djkormo/ContainersSamples/master/Kubernetes/labs.play-with-k8s.com/kubernetes_start.sh
# bash -x <( curl -L https://raw.githubusercontent.com/djkormo/ContainersSamples/master/Kubernetes/labs.play-with-k8s.com/kubernetes_start.sh )
# Initialize cluster and FIXUP some play-with-k8s annoyances (fixed kube-dashboard shortlink, update port-number)
test -d /etc/kubernetes/pki || (
# run kubeadm
kubeadm init --apiserver-advertise-address $(hostname -i) | tee ~/kubeadm-init.log
# apply weave cni
kubectl apply -n kube-system -f "https://cloud.weave.works/k8s/net?k8s-version=$(kubectl version | base64 -w0)"
# apply dashboard
curl -L -s https://raw.githubusercontent.com/kubernetes/dashboard/master/src/deploy/recommended/kubernetes-dashboard.yaml | sed 's/targetPort: 8443/targetPort: 8443\n type: LoadBalancer/' | kubectl apply -f -
# add Google's 8.8.8.8 dns
kubectl get deployment --namespace=kube-system kube-dns -oyaml|sed -r 's,(.*--server)=(/ip6.arpa/.*),&\n\1=8.8.8.8,'|kubectl apply -f -
# add service account to dashboard, from https://gist.github.com/figaw/17dc8ed72c8d2fe1a12682beb9c1e57e
# this gives anyone with access to the dashboard the cluster-admin role.. so.. clearly this is for development.
kubectl create -f https://raw.githubusercontent.com/djkormo/ContainersSamples/master/Kubernetes/labs.play-with-k8s.com/service-account.yaml
)
# allowing to deploy to master node
kubectl taint nodes --all node-role.kubernetes.io/master-
# k8s comfy'ness (add emacs)
cd
yum -q -y install bash-completion git-core tmux vim emacs wget sudo which nano mc lynx > /dev/null
kubectl completion bash > /etc/bash_completion.d/kubectl.completion
source /etc/bash_completion.d/kubectl.completion
# show kubeadm join ...
echo "* Join nodes with:"
grep -o "kubeadm.*join.*" ~/kubeadm-init.log
# (master shouldn't join
# kubeadm join --token $(kubeadm token list |sed -n 2p|egrep -o '^\S+') $(sed -rn s,.*server:.*//,,p /etc/kubernetes/admin.conf)
| true |
63858d97fd3cfed393623b1ac65be4044d5481e7 | Shell | itsbcit/openshift-dovecot | /mysql/80-dovecot-cleanpid.sh | UTF-8 | 134 | 2.875 | 3 | [
"Apache-2.0"
] | permissive | PID_DOVECOT="/run/dovecot/master.pid"
if [ -f ${PID_DOVECOT} ]; then
echo "removing: ${PID_DOVECOT}"
rm -f ${PID_DOVECOT}
fi
| true |
1b612da09d24e92ef592764192a3ae8040675f2d | Shell | frfuan2021asix2/asix2_fuentes_fran_m06uf2pr2 | /compt_fitx.sh | UTF-8 | 298 | 2.953125 | 3 | [] | no_license | #!/bin/bash
#primero imprime en pantalla y luego captura el teclado
echo "Ingresa el directorio de origen: "
read dir1
#comprime el directorio
tar -cvf Archivo_Comprimido.tar $dir1
if [ -s $dir1 ]
then
echo "Ingresa el directorio de llegada: "
read dir2
fi
cp -rf Archivo_Comprimido.tar $dir2
| true |
4f082996e30961018be363ccaf804f308f0a5a38 | Shell | EvgSumina/mmp_prac_spring_2021 | /hw_4/run.sh | UTF-8 | 5,930 | 2.71875 | 3 | [] | no_license | SOURCE_BASE_PATH="/Sumina_Eugenia_hw_4"
TMP_FOLDER_TASK1="/Sumina_Eugenia_hw_4/task1"
TMP_FOLDER_TASK2="/Sumina_Eugenia_hw_4/task2"
TMP_FOLDER_TASK3="/Sumina_Eugenia_hw_4/task3"
TMP_FOLDER_TASK4="/Sumina_Eugenia_hw_4/task4"
TMP_FOLDER_TASK5="/Sumina_Eugenia_hw_4/task5"
TMP_FOLDER_TASK6="/Sumina_Eugenia_hw_4/task6"
INPUT_HADOOP_DIR="/Sumina_Eugenia_hw_4/input"
OUTPUT_HADOOP_DIR="/Sumina_Eugenia_hw_4/output"
HADOOP_STREAMING_PATH="${HADOOP_HOME}/share/hadoop/tools/lib/hadoop-streaming-3.2.1.jar"
hdfs dfs -test -d ${INPUT_HADOOP_DIR}
if [ $? -eq 0 ];
then
echo "Remove ${INPUT_HADOOP_DIR}"
hdfs dfs -rm -r ${INPUT_HADOOP_DIR}
fi
hdfs dfs -test -d ${OUTPUT_HADOOP_DIR}
if [ $? -eq 0 ];
then
echo "Remove ${OUTPUT_HADOOP_DIR}"
hdfs dfs -rm -r ${OUTPUT_HADOOP_DIR}
fi
test -d ${SOURCE_BASE_PATH}/data/output
if [ $? -eq 0 ];
then
echo "Remove ${SOURCE_BASE_PATH}/data/output"
rm -rf ${SOURCE_BASE_PATH}/data/output
fi
test -d ${TMP_FOLDER_TASK1}
if [ $? -eq 0 ];
then
echo "Remove ${TMP_FOLDER_TASK1}"
hdfs dfs -rm -r ${TMP_FOLDER_TASK1}
fi
test -d ${TMP_FOLDER_TASK2}
if [ $? -eq 0 ];
then
echo "Remove ${TMP_FOLDER_TASK2}"
hdfs dfs -rm -r ${TMP_FOLDER_TASK2}
fi
test -d ${TMP_FOLDER_TASK3}
if [ $? -eq 0 ];
then
echo "Remove ${TMP_FOLDER_TASK3}"
hdfs dfs -rm -r ${TMP_FOLDER_TASK3}
fi
test -d ${TMP_FOLDER_TASK4}
if [ $? -eq 0 ];
then
echo "Remove ${TMP_FOLDER_TASK4}"
hdfs dfs -rm -r ${TMP_FOLDER_TASK4}
fi
test -d ${TMP_FOLDER_TASK5}
if [ $? -eq 0 ];
then
echo "Remove ${TMP_FOLDER_TASK5}"
hdfs dfs -rm -r ${TMP_FOLDER_TASK5}
fi
test -d ${TMP_FOLDER_TASK6}
if [ $? -eq 0 ];
then
echo "Remove ${TMP_FOLDER_TASK6}"
hdfs dfs -rm -r ${TMP_FOLDER_TASK6}
fi
hdfs dfs -mkdir -p ${INPUT_HADOOP_DIR}
hdfs dfs -copyFromLocal ${SOURCE_BASE_PATH}/data/input/ratings.csv ${INPUT_HADOOP_DIR}/ratings
hdfs dfs -copyFromLocal ${SOURCE_BASE_PATH}/data/input/movies.csv ${INPUT_HADOOP_DIR}/movies
chmod 0777 ${SOURCE_BASE_PATH}/src/mapper_1.py
chmod 0777 ${SOURCE_BASE_PATH}/src/reducer_1.py
hadoop_streaming_arguments="\
-D mapred.reduce.tasks=8 \
-D mapreduce.map.java.opts=-Xmx4g \
-D mapreduce.reduce.java.opts=-Xmx4g \
-D mapred.text.key.comparator.options=k1,1 \
-files ${SOURCE_BASE_PATH}/src \
-mapper src/mapper_1.py -reducer src/reducer_1.py \
-input ${INPUT_HADOOP_DIR}/* -output ${TMP_FOLDER_TASK1} \
"
hadoop jar ${HADOOP_STREAMING_PATH} ${hadoop_streaming_arguments}
chmod 0777 ${SOURCE_BASE_PATH}/src/mapper_2.py
chmod 0777 ${SOURCE_BASE_PATH}/src/reducer_2.py
hadoop_streaming_arguments="\
-D mapred.reduce.tasks=8 \
-D mapreduce.map.java.opts=-Xmx4g \
-D mapreduce.reduce.java.opts=-Xmx4g \
-D mapred.text.key.comparator.options=k1,1 \
-files ${SOURCE_BASE_PATH}/src \
-mapper src/mapper_2.py -reducer src/reducer_2.py \
-input ${TMP_FOLDER_TASK1}/* -output ${TMP_FOLDER_TASK2} \
"
hadoop jar ${HADOOP_STREAMING_PATH} ${hadoop_streaming_arguments}
chmod 0777 ${SOURCE_BASE_PATH}/src/mapper_3.py
chmod 0777 ${SOURCE_BASE_PATH}/src/reducer_3.py
hadoop_streaming_arguments="\
-D mapred.reduce.tasks=8 \
-D mapreduce.map.java.opts=-Xmx4g \
-D mapreduce.reduce.java.opts=-Xmx4g \
-D mapred.text.key.comparator.options=k1,1 \
-files ${SOURCE_BASE_PATH}/src \
-mapper src/mapper_3.py -reducer src/reducer_3.py \
-input ${INPUT_HADOOP_DIR}/ratings/* ${TMP_FOLDER_TASK2}/* -output ${TMP_FOLDER_TASK3} \
"
hadoop jar ${HADOOP_STREAMING_PATH} ${hadoop_streaming_arguments}
chmod 0777 ${SOURCE_BASE_PATH}/src/mapper_4.py
chmod 0777 ${SOURCE_BASE_PATH}/src/reducer_4.py
hadoop_streaming_arguments="\
-D mapred.reduce.tasks=8 \
-D mapreduce.map.java.opts=-Xmx4g \
-D mapreduce.reduce.java.opts=-Xmx4g \
-D mapred.text.key.comparator.options=k1,1 \
-files ${SOURCE_BASE_PATH}/src \
-mapper src/mapper_4.py -reducer src/reducer_4.py \
-input ${TMP_FOLDER_TASK3}/* -output ${TMP_FOLDER_TASK4} \
"
hdfs dfs -copyToLocal ${OUTPUT_HADOOP_DIR} ${SOURCE_BASE_PATH}/data
chmod 0777 ${SOURCE_BASE_PATH}/src/mapper_5.py
chmod 0777 ${SOURCE_BASE_PATH}/src/reducer_5.py
hadoop_streaming_arguments="\
-D mapred.reduce.tasks=8 \
-D mapreduce.map.java.opts=-Xmx4g \
-D mapreduce.reduce.java.opts=-Xmx4g \
-D mapred.text.key.comparator.options=k1,1 \
-files ${SOURCE_BASE_PATH}/src \
-mapper src/mapper_5.py -reducer src/reducer_5.py \
-input ${INPUT_HADOOP_DIR}/ratings/* ${TMP_FOLDER_TASK4}/* -output ${TMP_FOLDER_TASK5} \
"
hdfs dfs -copyToLocal ${OUTPUT_HADOOP_DIR} ${SOURCE_BASE_PATH}/data
chmod 0777 ${SOURCE_BASE_PATH}/src/mapper_6.py
chmod 0777 ${SOURCE_BASE_PATH}/src/reducer_6.py
hadoop_streaming_arguments="\
-D mapred.reduce.tasks=8 \
-D mapreduce.map.java.opts=-Xmx4g \
-D mapreduce.reduce.java.opts=-Xmx4g \
-D mapred.text.key.comparator.options=k1,1 \
-files ${SOURCE_BASE_PATH}/src \
-mapper src/mapper_6.py -reducer src/reducer_6.py \
-input ${INPUT_HADOOP_DIR}/movies/* ${TMP_FOLDER_TASK5}/* -output ${TMP_FOLDER_TASK6} \
"
hdfs dfs -copyToLocal ${OUTPUT_HADOOP_DIR} ${SOURCE_BASE_PATH}/data
chmod 0777 ${SOURCE_BASE_PATH}/src/mapper_7.py
chmod 0777 ${SOURCE_BASE_PATH}/src/reducer_7.py
hadoop_streaming_arguments="\
-D mapred.reduce.tasks=8 \
-D mapreduce.map.java.opts=-Xmx4g \
-D mapreduce.reduce.java.opts=-Xmx4g \
-D stream.num.map.output.key.fields=3 \
-D mapreduce.partition.keycomparator.options='-k1,1-k3,3nr-k2,2' \
-files ${SOURCE_BASE_PATH}/src \
-mapper src/mapper_7.py -reducer src/reducer_7.py \
-input ${TMP_FOLDER_TASK6}/* -output ${OUTPUT_HADOOP_DIR} \
"
hdfs dfs -copyToLocal ${OUTPUT_HADOOP_DIR} ${SOURCE_BASE_PATH}/data
hdfs dfs -rm -r ${INPUT_HADOOP_DIR}
hdfs dfs -rm -r ${OUTPUT_HADOOP_DIR}
hdfs dfs -rm -r ${TMP_FOLDER_TASK1}
hdfs dfs -rm -r ${TMP_FOLDER_TASK2}
hdfs dfs -rm -r ${TMP_FOLDER_TASK3}
hdfs dfs -rm -r ${TMP_FOLDER_TASK4}
hdfs dfs -rm -r ${TMP_FOLDER_TASK5}
hdfs dfs -rm -r ${TMP_FOLDER_TASK6}
| true |
9bbf55b94eb0af76b15c49568b114a57a87ce08a | Shell | SchrodingerZhu/StanfordLib-CUHKSZ | /misc/generate-mac.sh | UTF-8 | 553 | 2.578125 | 3 | [] | no_license | #!/usr/bin/env sh
set -e
mkdir -p dist/libs
cp -r res dist
cp -r src dist
cp misc/template.cmake dist/CMakeLists.txt
cp misc/template.qmake dist/my_project.pro
cp misc/lib.conf dist/libs
cp "build/libstanford.dylib" dist/libs
# Generate Header files
mkdir -p dist/includes/stanford
mkdir -p dist/includes/abseil
cp -r abseil-cpp/absl dist/includes/abseil
cd StanfordCPPLib && rsync -R */*.h ../dist/includes/stanford && cp macro.h ../dist/includes/stanford &&\
cp images.qrc ../dist/includes/stanford && cd ..
zip -9 -r "x86_64-darwin-clang.zip" dist
| true |
3c847ace181c7652afbf3f00d885d128c1d43bbe | Shell | phmullins/knowledge | /scripts/makepass.sh | UTF-8 | 400 | 3.0625 | 3 | [] | no_license | #!/bin/bash
#
# Script Name: ~/bin/makepass.sh
# Description: Super easy way of generating a random 24 character password.
# Created: 2017-12-21 @ 10:28 AM | Modified 2018-11-23 @ 09:24 AM.
# Author: patrick@arkmail.us
#
# Generates a random 24 character password. Change the number increase or decrease
# the length of the password.
#
echo `env LC_CTYPE=C tr -dc "a-zA-Z0-9-_\$\?" < /dev/urandom | head -c 24` | true |
a9a181c52cb75073d67fe69946c3805339b3af7c | Shell | prometheus/test-infra | /tools/prometheus-builder/build.sh | UTF-8 | 988 | 3.5625 | 4 | [
"Apache-2.0"
] | permissive | #!/bin/bash
DIR="/go/src/github.com/prometheus/prometheus"
if [[ -z $PR_NUMBER || -z $VOLUME_DIR || -z $GITHUB_ORG || -z $GITHUB_REPO ]]; then
echo "ERROR:: environment variables not set correctly"
exit 1;
fi
echo ">> Cloning repository $GITHUB_ORG/$GITHUB_REPO"
if ! git clone https://github.com/$GITHUB_ORG/$GITHUB_REPO.git $DIR; then
echo "ERROR:: Cloning of repo $GITHUB_ORG/$GITHUB_REPO failed"
exit 1;
fi
cd $DIR || exit 1
echo ">> Fetching Pull Request $GITHUB_ORG/$GITHUB_REPO/pull/$PR_NUMBER"
if ! git fetch origin pull/$PR_NUMBER/head:pr-branch; then
echo "ERROR:: Fetching of PR $PR_NUMBER failed"
exit 1;
fi
git checkout pr-branch
echo ">> Creating prometheus binaries"
if ! make build PROMU_BINARIES="prometheus"; then
echo "ERROR:: Building of binaries failed"
exit 1;
fi
echo ">> Copy files to volume"
cp prometheus $VOLUME_DIR/prometheus
cp -r console_libraries/ $VOLUME_DIR
cp -r consoles/ $VOLUME_DIR
| true |
1cc00479bc2dc606269fcc6eb800f1fcef3ce7d7 | Shell | ourobouros/k8s | /test/test-infra/airflow/entrypoint.sh | UTF-8 | 2,395 | 3.953125 | 4 | [
"Apache-2.0"
] | permissive | #!/usr/bin/env bash
#
# A startup script for Airflow.
#
# Based on
# https://raw.githubusercontent.com/puckel/docker-airflow/master/script/entrypoint.sh
AIRFLOW_HOME="/usr/local/airflow"
CMD="airflow"
TRY_LOOP="20"
# TODO(jlewi): This is currently getting overwritten in the YAML file.
: ${POSTGRES_HOST:="postgres"}
: ${POSTGRES_PORT:="5432"}
: ${POSTGRES_USER:="airflow"}
: ${POSTGRES_PASSWORD:="airflow"}
: ${POSTGRES_DB:="airflow"}
# TODO(jlewi): Should we make the key into the Docker image rather than doing
# it on startup?
: ${FERNET_KEY:=$(python -c "from cryptography.fernet import Fernet; FERNET_KEY = Fernet.generate_key().decode(); print(FERNET_KEY)")}
# Update airflow config - Fernet key
sed -i "s|\$FERNET_KEY|$FERNET_KEY|" "$AIRFLOW_HOME"/airflow.cfg
# Wait for Postresql
# TODO(jlewi): If we are just using LocalExecutor we should always be starting
# the webserver so we could maybe eliminate the if statement and simplify
# this.
if [ "$1" = "webserver" ] || [ "$1" = "worker" ] || [ "$1" = "scheduler" ] ; then
i=0
while ! nc -z $POSTGRES_HOST $POSTGRES_PORT >/dev/null 2>&1 < /dev/null; do
i=$((i+1))
if [ "$1" = "webserver" ]; then
echo "$(date) - waiting for ${POSTGRES_HOST}:${POSTGRES_PORT}... $i/$TRY_LOOP"
if [ $i -ge $TRY_LOOP ]; then
echo "$(date) - ${POSTGRES_HOST}:${POSTGRES_PORT} still not reachable, giving up"
exit 1
fi
fi
sleep 10
done
fi
if [ -n "${GOOGLE_APPLICATION_CREDENTIALS}" ]; then
echo GOOGLE_APPLICATION_CREDENTIALS=${GOOGLE_APPLICATION_CREDENTIALS}
# Configure gcloud to use this service account
gcloud auth activate-service-account --key-file=${GOOGLE_APPLICATION_CREDENTIALS}
fi
# TODO(jlewi): Can we get get rid of the sed and just put this into our config
# file?
sed -i "s#sql_alchemy_conn = postgresql+psycopg2://airflow:airflow@postgres/airflow#sql_alchemy_conn = postgresql+psycopg2://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB#" "$AIRFLOW_HOME"/airflow.cfg
sed -i "s#broker_url = redis://redis:6379/1#broker_url = redis://$REDIS_PREFIX$REDIS_HOST:$REDIS_PORT/1#" "$AIRFLOW_HOME"/airflow.cfg
echo "Initialize database..."
$CMD initdb
echo start the webserver
exec $CMD webserver &
# TODO(jlewi): How do we capture logs from the scheduler? Maybe we should
# move it into its own container?
echo start the scheduler
exec $CMD scheduler
| true |
c0b784c08e31d9ba7e6177c6d21c7f7a4308bd7a | Shell | louismunro/configfiles | /.bashrc | UTF-8 | 1,070 | 3.203125 | 3 | [] | no_license | # Source global definitions
if [ -f /etc/bashrc ]; then
. /etc/bashrc
fi
# set prompt
if [ -n "$PS1" ]; then
PS1='\[\033[1;33m\]\H \[\033[1;32m\]\u: \w\n${?##0}\$ \[\033[1;37m\]';
fi
# VARIABLES
export HISTCONTROL=ignoredups # ignore duplicate commands in history
export EDITOR=/usr/bin/vim # set vi as default editor
export PAGER=less # use less
export LESS=im # set pager options (see man 1 less)
# SHELL OPTIONS
# Make bash check it's window size after a process completes
shopt -s checkwinsize
# prevent file clobbering
set -o noclobber
# Make Bash append rather than overwrite the history on disk
shopt -s histappend
# Whenever displaying the prompt, write the previous line to disk
export PROMPT_COMMAND='history -a'
# correct minor spelling errors in a cd command
shopt -s cdspell
# ksh-88 egrep-style extended pattern matching
shopt -s extglob
# complete ssh hostnames
complete -W "$(echo `cat ~/.ssh/known_hosts | cut -f 1 -d ' ' | cut -f 1 -d, | sort -u | grep -v '\['`; )" ssh
source ~/.bashfunc
source ~/.bashalias
source ~/.bashlocal
| true |
1da03a652151f84592d68843b7ea0fb75d312a59 | Shell | dockcross/dockcross | /imagefiles/build-and-install-ninja.sh | UTF-8 | 997 | 4.3125 | 4 | [
"MIT"
] | permissive | #!/usr/bin/env bash
#
# Configure, build and install ninja
#
# Usage:
#
# build-and-install-ninja.sh [-python /path/to/bin/python]
set -e
set -o pipefail
PYTHON=python
while [ $# -gt 0 ]; do
case "$1" in
-python)
PYTHON=$2
shift
;;
*)
echo "Usage: Usage: ${0##*/} [-python /path/to/bin/python]"
exit 1
;;
esac
shift
done
if [[ -z "${NINJA_VERSION}" ]]; then
echo >&2 'error: NINJA_VERSION env. variable must be set to a non-empty value'
exit 1
fi
# Download
url="https://github.com/ninja-build/ninja/archive/v${NINJA_VERSION}.tar.gz"
curl --connect-timeout 30 \
--max-time 10 \
--retry 5 \
--retry-delay 10 \
--retry-max-time 30 \
-# -o ninja.tar.gz -LO "$url"
mkdir ninja
tar -xzvf ./ninja.tar.gz --strip-components=1 -C ./ninja
# Configure, build and install
pushd ./ninja
echo "Configuring ninja using [$PYTHON]"
$PYTHON ./configure.py --bootstrap && ./ninja
cp ./ninja /usr/bin/
popd
# Clean
rm -rf ./ninja*
| true |
8847105fca909661ab1bdaee8bc0c296b58cb926 | Shell | hebda/ggAnalysis | /radion/scripts/LaunchData2012.sh | UTF-8 | 2,793 | 3.6875 | 4 | [] | no_license | #!/bin/bash
usage() {
echo "`basename $0` -f filelist -c configfile -n njobs(default=1) [-i]"
echo " -f filelist: filelist of input (e.g. scripts/ExampleDataDiphoton8TeVSkimEOS.list)"
echo " -c configfile: config file (e.g. configFilesDir/mvaAnalysisTest.config)"
echo " -i: interactive mode (by default job sent to batch system)"
}
mainConfigFile=notSpecified
inFileList=notSpecified
nJobs=1
interactive=0
if ! options=$( getopt -o hc:f:n:i -l help -- "$@" )
then
# something went wrong, getopt will put out an error message for us
exit 1
fi
eval set -- $options
while [ $# -gt 0 ]; do
case "$1" in
-h | --help) usage; exit 0;;
-c) mainConfigFile=$2; shift;;
-f) inFileList=$2; shift;;
-n) nJobs=$2; shift;;
-i) interactive=1;;
(--) shift; break;;
(-*) echo "$0: error - unrecognized option $1" 1>&2; usage >> /dev/stderr; exit 1;;
(*) break;;
esac
shift
done
###### print and check configuration
echo "================================="
echo " - config file: " $mainConfigFile
echo " - file list : " $inFileList
echo " - njobs : " $nJobs
echo " FIX ME: user has to verify that nJobs x nEvtPerJobs (in config) > nTot"
if [ $mainConfigFile == "notSpecified" ]; then
echo no good: $mainConfigFile
usage;
exit 1;
elif [ ! -f $mainConfigFile ]; then
echo " config file does not exist... bailout"
exit 1;
fi
if [ $inFileList == "notSpecified" ]; then
usage;
exit 1;
elif [ ! -f $inFileList ]; then
echo " input filelist does not exist... bailout"
exit 1;
fi
echo "================================="
#exit 0;
optionsub="-q 1nd "
dirafs=`pwd`
dirscript=tmpBatchOut/
eosPref=root://eoscms//eos/cms
eosPref=""
config() {
file=$1
script=${2}
ijob=$3
config=$4
filelist="unknown"
if [ $# -ge 5 ]; then
filelist=${5}
fi
exe="runAna.C+(${ijob},\"$file\",\"${config}\")"
exe="Make.C(${ijob},\"$file\",\"${config}\")"
echo "$exe"
cat > $script<<EOF
#!/bin/bash
cd $dirafs
source scripts/env532.sh
echo "castor: $dircastor"
echo "ROOTSYS: \$ROOTSYS"
gcccom="\`which gcc\`"
echo "gcc:" \$gcccom
echo "where am I:\`pwd\`"
echo root -b -q rootlogon.C '$exe'
root -b -q '$exe'
EOF
chmod +x $script
}
mkdir -p $dirscript
configfile=$mainConfigFile
let "nJobs=nJobs-1"
for f in $( cat $inFileList ); do
for ijob in $( seq 0 1 $nJobs ); do
# echo " test file $f exist"
# cmsLs $f
# retval=$?
# if [ $retval -eq 0 ]; then
filename=`basename $f`
script=script$$
script=${script}_${filename/root/sh}_${ijob}
cd $dirscript/
config ${eosPref}${f} $script $ijob $configfile
echo "-> created script: "$script
if [ $interactive -eq 1 ]; then
source $script
else
bsub $optionsub $script
fi
cd -
# fi
done
done
| true |
b2981b89d92eb47b06e64b87da5b3b68a10ea56a | Shell | dulcet/nvidia-patch | /patch.sh | UTF-8 | 7,297 | 2.828125 | 3 | [] | no_license | #!/bin/bash
# halt on any error for safety and proper pipe handling
set -euo pipefail ; # <- this semicolon and comment make options apply
# even when script is corrupt by CRLF line terminators (issue #75)
# empty line must follow this comment for immediate fail with CRLF newlines
backup_path="/opt/nvidia/libnvidia-encode-backup"
silent_flag=''
rollback_flag=''
print_usage() { printf '
SYNOPSIS
patch.sh [OPTION]...
DESCRIPTION
The patch for Nvidia drivers to increase encoder sessions
-s Silent mode (No output)
-r Rollback to original (Restore lib from backup)
-h Print this help message
'
}
while getopts 'rsh' flag; do
case "${flag}" in
r) rollback_flag='true' ;;
s) silent_flag='true' ;;
*) print_usage
exit 1 ;;
esac
done
if [[ $silent_flag ]]; then
exec 1> /dev/null
fi
declare -A patch_list=(
["375.39"]='s/\x85\xC0\x89\xC5\x75\x18/\x29\xC0\x89\xC5\x90\x90/g'
["390.77"]='s/\x85\xC0\x89\xC5\x75\x18/\x29\xC0\x89\xC5\x90\x90/g'
["390.87"]='s/\x85\xC0\x89\xC5\x75\x18/\x29\xC0\x89\xC5\x90\x90/g'
["396.24"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["396.26"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["396.37"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g' #added info from https://github.com/keylase/nvidia-patch/issues/6#issuecomment-406895356
# break nvenc.c:236,layout asm,step-mode,step,break *0x00007fff89f9ba45
# libnvidia-encode.so @ 0x15a45; test->sub, jne->nop-nop-nop-nop-nop-nop
["396.54"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["410.48"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["410.57"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["410.73"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["410.78"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["410.79"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["410.93"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["410.104"]='s/\x85\xC0\x89\xC5\x0F\x85\x96\x00\x00\x00/\x29\xC0\x89\xC5\x90\x90\x90\x90\x90\x90/g'
["415.18"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x40\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["415.25"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x40\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["415.27"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x40\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["418.30"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x40\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["418.43"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x40\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["418.56"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x40\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["418.67"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x40\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["418.74"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["418.87.00"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["430.09"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["430.14"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["430.26"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["430.34"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["430.40"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["435.17"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
["435.21"]='s/\x00\x00\x00\x84\xc0\x0f\x84\x0f\xfd\xff\xff/\x00\x00\x00\x84\xc0\x90\x90\x90\x90\x90\x90/g'
)
declare -A object_list=(
["375.39"]='libnvidia-encode.so'
["390.77"]='libnvidia-encode.so'
["390.87"]='libnvidia-encode.so'
["396.24"]='libnvidia-encode.so'
["396.26"]='libnvidia-encode.so'
["396.37"]='libnvidia-encode.so'
["396.54"]='libnvidia-encode.so'
["410.48"]='libnvidia-encode.so'
["410.57"]='libnvidia-encode.so'
["410.73"]='libnvidia-encode.so'
["410.78"]='libnvidia-encode.so'
["410.79"]='libnvidia-encode.so'
["410.93"]='libnvidia-encode.so'
["410.104"]='libnvidia-encode.so'
["415.18"]='libnvcuvid.so'
["415.25"]='libnvcuvid.so'
["415.27"]='libnvcuvid.so'
["418.30"]='libnvcuvid.so'
["418.43"]='libnvcuvid.so'
["418.56"]='libnvcuvid.so'
["418.67"]='libnvcuvid.so'
["418.74"]='libnvcuvid.so'
["418.87.00"]='libnvcuvid.so'
["430.09"]='libnvcuvid.so'
["430.14"]='libnvcuvid.so'
["430.26"]='libnvcuvid.so'
["430.34"]='libnvcuvid.so'
["430.40"]='libnvcuvid.so'
["435.17"]='libnvcuvid.so'
["435.21"]='libnvcuvid.so'
)
NVIDIA_SMI="$(command -v nvidia-smi)"
if ! driver_version=$("$NVIDIA_SMI" --query-gpu=driver_version --format=csv,noheader,nounits | head -n 1) ; then
echo 'Something went wrong. Check nvidia driver'
exit 1;
fi
echo "Detected nvidia driver version: $driver_version"
if [[ ! "${patch_list[$driver_version]+isset}" || ! "${object_list[$driver_version]+isset}" ]]; then
echo "Patch for this ($driver_version) nvidia driver not found." 1>&2
echo "Available patches for: " 1>&2
for drv in "${!patch_list[@]}"; do
echo "$drv" 1>&2
done
exit 1;
fi
patch="${patch_list[$driver_version]}"
object="${object_list[$driver_version]}"
declare -a driver_locations=(
'/usr/lib/x86_64-linux-gnu'
'/usr/lib/x86_64-linux-gnu/nvidia/current/'
'/usr/lib64'
"/usr/lib/nvidia-${driver_version%%.*}"
)
dir_found=''
for driver_dir in "${driver_locations[@]}" ; do
if [[ -e "$driver_dir/$object.$driver_version" ]]; then
dir_found='true'
break
fi
done
[[ "$dir_found" ]] || { echo "ERROR: cannot detect driver directory"; exit 1; }
if [[ $rollback_flag ]]; then
if [[ -f "$backup_path/$object.$driver_version" ]]; then
cp -p "$backup_path/$object.$driver_version" \
"$driver_dir/$object.$driver_version"
echo "Restore from backup $object.$driver_version"
else
echo "Backup not found. Try to patch first."
exit 1;
fi
else
if [[ ! -f "$backup_path/$object.$driver_version" ]]; then
echo "Attention! Backup not found. Copy current $object to backup."
mkdir -p "$backup_path"
cp -p "$driver_dir/$object.$driver_version" \
"$backup_path/$object.$driver_version"
fi
sha1sum "$backup_path/$object.$driver_version"
sed "$patch" "$backup_path/$object.$driver_version" > \
"${PATCH_OUTPUT_DIR-$driver_dir}/$object.$driver_version"
sha1sum "${PATCH_OUTPUT_DIR-$driver_dir}/$object.$driver_version"
ldconfig
echo "Patched!"
fi
| true |
ce4dee20374255e950890683ce60c43acb9f8dee | Shell | bioinfo-fcav/metagenomatic | /pipe_wgs_asm_pe.sh | UTF-8 | 20,980 | 3.140625 | 3 | [] | no_license | #!/bin/bash
#
# INGLÊS/ENGLISH
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# http://www.gnu.org/copyleft/gpl.html
#
#
# PORTUGUÊS/PORTUGUESE
# Este programa é distribuído na expectativa de ser útil aos seus
# usuários, porém NÃO TEM NENHUMA GARANTIA, EXPLÍCITAS OU IMPLÍCITAS,
# COMERCIAIS OU DE ATENDIMENTO A UMA DETERMINADA FINALIDADE. Consulte
# a Licença Pública Geral GNU para maiores detalhes.
# http://www.gnu.org/copyleft/gpl.html
#
# Copyright (C) 2012 Universidade de São Paulo
#
# Universidade de São Paulo
# Laboratório de Biologia do Desenvolvimento de Abelhas
# Núcleo de Bioinformática (LBDA-BioInfo)
#
# Daniel Guariz Pinheiro
# dgpinheiro@gmail.com
# http://zulu.fmrp.usp.br/bioinfo
#
# Diretório onde está o diretório ./processed/prinseq com os arquivos .fastq processados
input="$1"
# Expressão regular para distinguir grupos de arquivos para a montagem
re="$2"
# Nome para os contigs/scaffolds montados
asmname="$3"
# Número de threads disponíveis para os processos
threads=14
# Número de threads para o processamento dos arquivos pmap utilizando parallel
pmap_threads=2
# Número de sequências dentro de cada partição
partitions_n=100000
# http://khmer.readthedocs.org/en/v1.0/choosing-table-sizes.html
# Memória disponível = -N (n_tables) * -x (tablesize)
memlimitGB=21
memlimitMB=$((memlimitMB*1000))
# khmer parâmetro -N
# n_tables = Memória disponível em GB / tablesize
# Retirado da documentação: "Just use use -N 4, always, and vary the -x parameter."
khmer_N="4"
# khmer parâmetro -x
# tablesize = Memória disponível em GB / n_tables * 1 bilhão
khmer_byte_x="1e9"
khmer_byte_graph_x="$((memlimitGB/${khmer_N}))e9"
# khmer parâmetro -k
khmer_k=23
# Tamanho mínimo para a avaliação das montagens, realizada pela soma dos tamanhos de todos os contigs maiors que este valor
cutoff=200
# Check read length:
# perl -lane 'INIT { our $size=0; my $c = 0; } if ($.%4==2) { last if ($c > 10); $size+=length($_); $c++; } END { print $size/$c; }' ./processed/prinseq/sampleA1.scythe.cutadapt5p.filtered.prinseq_1.fastq
read_len=150
cutoff_perc=$(echo "scale=2; (${cutoff}/${read_len})" | bc -l)
TMP_DIR="/state/partition1"
# as linhas que iniciam com cerquilha são comentários
if [ ! ${input} ]
then
echo "Missing input directory"
exit
else
if [ ! -d ${input} ]
then
echo "Wrong input directory ${input}"
exit
fi
fi
if [ ! ${asmname} ]
then
asmname="testasm"
fi
biosamples=()
echo "Assembling data from ${input} for ${asmname} ..."
if [ ! ${re} ]
then
biosamples=("*")
else
for i in ${input}/processed/prinseq/*_1.fastq; do
name=`basename ${i} .fastq | sed 's/\..*//'`
if [[ $name =~ ${re} ]]; then
biosamples=($(printf "%s\n" ${biosamples[@]} "${BASH_REMATCH[1]}" | sort -u ))
fi
done
fi
echo " Selected samples: ${biosamples[*]} "
curdir=`pwd`
cd ${input}
finalasm=()
for samp in "${biosamples[@]}"; do
sampname=""
if [ "${samp}" == "*" ]; then
sampname="all"
else
sampname="${samp}"
fi
mkdir -p ./${sampname}
cd ./${sampname}
echo " Processing sample ${sampname}"
echo " Link and interleave reads ..."
mkdir -p ./reads
cd ./reads
anyse=0
# s1_pe s1_se s2_pe s2_se
for i in ../../processed/prinseq/${samp}*_1.fastq; do
bn=`basename ${i} _1.fastq`
simplename=`echo ${bn} | sed 's/.scythe.cutadapt5p.filtered.prinseq//'`
ln -f -s ../../processed/prinseq/${bn}_1.fastq s1_pe.fq
ln -f -s ../../processed/prinseq/${bn}_2.fastq s2_pe.fq
interleave-reads.py s?_pe.fq > ${simplename}_combined.pe.fq 2> ${simplename}_combined.pe.interleave-reads.err.txt
gzip -9c ${simplename}_combined.pe.fq > ${simplename}_combined.pe.fq.gz
if [ -e ../../processed/prinseq/${bn}_1_singletons.fastq ]; then
ln -f -s ../../processed/prinseq/${bn}_1_singletons.fastq s1_se.fq
cat s1_se.fq > ${simplename}_combined.se.fq
fi
if [ -e ../../processed/prinseq/${bn}_2_singletons.fastq ]; then
ln -f -s ../../processed/prinseq/${bn}_2_singletons.fastq s2_se.fq
cat s2_se.fq >> ${simplename}_combined.se.fq
fi
if [ -e ${simplename}_combined.se.fq ]; then
anyse=1
gzip -9c ${simplename}_combined.se.fq > ${simplename}_combined.se.fq.gz
fi
rm -f *.fq
done
cd ../
echo " Digital normalization - \"diginorm\" ..."
mkdir -p diginorm
cd ./diginorm
### Normaliza tudo para uma cobertura de 20, considerando um k-mer de 20
# PE (-p)
normalize-by-median.py -k ${khmer_k} -C 20 -N ${khmer_N} -x ${khmer_byte_x} -p --savetable normC20k20.kh ../reads/*.pe.fq.gz > normC20k20.pe.out.txt 2> normC20k20.pe.err.txt
# SE
if [ ${anyse} ]; then
normalize-by-median.py -k ${khmer_k} -C 20 -N ${khmer_N} -x ${khmer_byte_x} --savetable normC20k20.kh --loadtable normC20k20.kh ../reads/*.se.fq.gz > normC20k20.se.out.txt 2> normC20k20.se.err.txt
fi
### Poda leituras em k-mers que são pouco abundantes em leituras de alta cobertura. A opção -V é usada para datasets com cobertura variável.
filter-abund.py -V normC20k20.kh *.keep > filter-abund.out.txt 2> filter-abund.err.txta
### Extração de arquivos PE (final .pe) e SE (final .se)
for i in *.pe.fq.gz.keep.abundfilt; do
extract-paired-reads.py ${i} > ${i}.extract-paired-reads.out.txt 2> ${i}.extract-paired-reads.err.txt
done
### Após eliminar k-mers errôneos, vamos abandonar mais alguns dados de alta cobertura.
# PE (-p)
normalize-by-median.py -C 5 -k ${khmer_k} -N ${khmer_N} -x ${khmer_byte_x} -p --savetable normC5k20.kh *.pe.fq.gz.keep.abundfilt.pe > normC5k20.pe.out.txt 2> normC5k20.pe.err.txt
# SE
if [ ${anyse} ]; then
normalize-by-median.py -C 5 -k ${khmer_k} -N ${khmer_N} -x ${khmer_byte_x} --savetable normC5k20.kh --loadtable normC5k20.kh *.pe.fq.gz.keep.abundfilt.se *.se.fq.gz.keep.abundfilt > normC5k20.se.out.txt 2> normC5k20.se.err.txt
fi
# Compactar cada amostra (gzip) em arquivos com nome base mais curto
for i in `ls *.pe.fq.gz.keep.abundfilt.pe.keep`; do bn=`basename ${i} .pe.fq.gz.keep.abundfilt.pe.keep`; gzip -9c ${i} > ${bn}.pe.kak.fq.gz; done
if [ ${anyse} ]; then
for i in `ls *.pe.fq.gz.keep.abundfilt.se.keep`; do bn=`basename ${i} .pe.fq.gz.keep.abundfilt.se.keep`; gzip -9c ${i} > ${bn}.se.kak.fq.gz; done
for i in `ls *.se.fq.gz.keep.abundfilt.keep`; do bn=`basename ${i} .se.fq.gz.keep.abundfilt.keep`; gzip -9c ${i} >> ${bn}.se.kak.fq.gz; done
fi
# Remover arquivos desnecessários
rm -f normC20k20.kh *.keep *.abundfilt *.pe *.se
readstats.py *.kak.fq.gz ../../processed/prinseq/${samp}*.fastq > diginorm.out.txt 2> diginorm.err.txt
cd ../
echo " Partitioning ..."
mkdir -p ./partitioned
cd ./partitioned
### Eliminação dos k-mers altamente repetitivos que podem juntar múltiplas espécies (quimeras) e renomear de forma apropriada:
filter-below-abund.py ../diginorm/normC5k20.kh ../diginorm/*.fq.gz > filter-below-abund.out.txt 2> filter-below-abund.err.txt
# Renomear para .below.fq
for i in *.below; do mv ${i} ${i}.fq; done
## Carrega grafo de k-mers
load-graph.py -k ${khmer_k} -T ${threads} -N ${khmer_N} -x ${khmer_byte_graph_x} lump *.below.fq > load-graph.out.txt 2> load-graph.err.txt
## Encontrando k-mers altamente conectados iniciais (possíveis artefatos)
make-initial-stoptags.py -k ${khmer_k} -N ${khmer_N} -x ${khmer_byte_graph_x} lump > make-initial-stoptags.out.txt 2> make-initial-stoptags.err.txt
## Particiona o grafo de acordo com a sua conectividade
partition-graph.py --threads ${threads} --stoptags lump.stoptags lump > partition-graph.out.txt 2> partition-graph.err.txt
pmap_count=`ls -l lump.*.pmap | wc -l`
# Evitar divisão por zero
if [ ${pmap_count} -lt ${pmap_threads} ]; then
pmap_count=${pmap_count}
fi
## Encontrando k-mers altamente conectados (possíveis artefatos)
pmap_count=`ls -l lump.*.pmap | wc -l`
if [ ${pmap_count} -lt ${pmap_threads} ]; then
# 1 em cada thread
pmap_limit=1
else
# (pmap_count / pmap_thread) em cada thread)
pmap_limit=$((pmap_count / pmap_threads))
fi
echo " PMAP count: ${pmap_count} ${pmap_limit}"
pmap_c=0
pmap_dir=0
rm -f ./run-find-knots.sh
for i in lump.*.pmap; do
if [ $((pmap_c % pmap_limit)) == 0 ]; then
pmap_dir=$((pmap_dir + 1))
mkdir -p ./fk.${pmap_dir}
ln -s $(readlink -f lump.pt) ./fk.${pmap_dir}/lump.pt
ln -s $(readlink -f lump.tagset) ./fk.${pmap_dir}/lump.tagset
echo "(cd ./fk.${pmap_dir} && find-knots.py lump > find-knots.out.txt 2> find-knots.err.txt)" >> ./run-find-knots.sh
fi
echo " Move ${i} to fk.${pmap_dir}"
mv ${i} ./fk.${pmap_dir}/
done
echo " Running find-knots.sh using ${pmap_threads} parallel processes ..."
parallel --gnu -j ${pmap_threads} < ./run-find-knots.sh
echo " Merging all .stoptags files to merge.stoptags ..."
merge-stoptags.py -k ${khmer_k} ./fk > merge-stoptags.out.txt 2> merge-stoptags.err.txt
echo " Filtering stoptags ..."
### Poda sequências nos k-mers considerados artefatos
filter-stoptags.py -k ${khmer_k} merge.stoptags *.kak.fq.gz.below.fq > filter-stoptags.out.txt 2> filter-stoptags.err.txt
echo " do-partitions ..."
### Particionamento, gera arquivos que contêm as anotações das partições
do-partition.py -N ${khmer_N} -k ${khmer_k} -x ${khmer_byte_graph_x} -T ${threads} kak *.kak.fq.gz.below.fq.stopfilt > do-partition.out.txt 2> do-partition.err.txt
echo " extract-partitions ..."
### Extraindo partições em grupos
extract-partitions.py -m 0 -X ${partitions_n} kak *.part > extract-partitions.out.txt 2> extract-partitions.err.txt
# Extraindo arquivos PE e SE (dn - digital normalization)
for i in kak*.fq; do
extract-paired-reads.py ${i} > ${i}.extract-paired-reads.out.txt 2> ${i}.extract-paired-reads.err.txt
name=$(basename ${i} .fq)
mv ${name}.fq.pe ${name}.dn.pe.fq
mv ${name}.fq.se ${name}.dn.se.fq
done
mkdir -p ../input
# Cópia
cp *.dn.?e.fq ../input
# Compressão
gzip *.dn.?e.fq
echo " sweep-reads ..."
### Alocar os dados processados (sem normalização) em partições - Recupera reads baseadas no compartilhamento de k-mers
sweep-files.py -k ${khmer_k} -N ${khmer_N} -x ${khmer_byte_graph_x} --db kak.group*.fq --query ../reads/*.?e.fq.gz > sweep-files.out.txt 2> sweep-files.err.txt
# Extraindo arquivos PE e SE (nodn - no digital normalization)
for i in *kak*.sweep; do
sweep=$(basename $i .fq)
mv $i $sweep.fq
extract-paired-reads.py ${sweep}.fq
mv $sweep.fq.pe ${sweep}.nodn.pe.fq
mv $sweep.fq.se ${sweep}.nodn.se.fq
done
# Cópia
cp *.nodn.?e.fq ../input
# Compressão
gzip *.nodn.se.fq *.nodn.pe.fq
# Removendo arquivos desnecessários
#rm -f *.sh *.part *.sweep.fq *.below.fq *.stopfilt *.fq
#rm -f ../diginorm/normC5k20.kh
cd ../
echo " Assembling ..."
mkdir -p ./assembled
cd ./assembled
groups=()
infiles=`ls ../input/*.*.pe.fq`;
for i in ${infiles[@]}; do
name=$(basename $i .pe.fq);
indir=$(dirname $i)
echo " [${name}] ..."
if [ ! -s ${indir}/${name}.se.fq ]; then
echo " Put a fake read to single end data ..."
echo -e "@SAMPLE0000000000/1\nNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\n+\nIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n" > ${indir}/${name}.se.fq
echo -e "@SAMPLE0000000000/2\nNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\n+\nIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n" >> ${indir}/${name}.se.fq
fi
echo " Change input files' format"
# minia
cat ${indir}/${name}.se.fq | fastq2fasta.pl -n 100 > ${indir}/${name}.fa
cat ${indir}/${name}.pe.fq | fastq2fasta.pl -n 100 >> ${indir}/${name}.fa
# NEWBLER
cat ${indir}/${name}.pe.fq | deinterleave_pairs -o ${indir}/${name}.pe_1.fq ${indir}/${name}.pe_2.fq
# idba_ud
fastq-se2ipe.pl ${indir}/${name}.se.fq | fastq2fasta.pl -n 100 > ${indir}/${name}.se.pe.fa
cat ${indir}/${name}.pe.fq | fastq2fasta.pl -n 100 > ${indir}/${name}.pe.fa
# ABYSS - nomes idênticos em R1 e R2 com a única diferença de possuir um /1 ou /2, respectivamente (não tenho certeza se necessário).
cat ${indir}/${name}.pe_1.fq | renameSeqs.pl -p ABYSSPE | sed 's/\(^@ABYSSPE[^ ]*\).*/\1\/1/' > ${indir}/${name}.abyss.pe_1.fq
cat ${indir}/${name}.pe_2.fq | renameSeqs.pl -p ABYSSPE | sed 's/\(^@ABYSSPE[^ ]*\).*/\1\/2/' > ${indir}/${name}.abyss.pe_2.fq
cat ${indir}/${name}.se.fq | renameSeqs.pl -p ABYSSSE > ${indir}/${name}.abyss.se.fq
echo " IDBA-UD ..."
# scaffold.fa
idba_ud --num_threads ${threads} --read ${indir}/${name}.pe.fa --read_level_2 ${indir}/${name}.se.pe.fa --min_contig ${cutoff} --maxk 51 --step 16 --mink 19 --min_pairs 0 -o ${name}.idba_ud.0.d > ${name}.idba_ud.0.log.out.txt 2> ${name}.idba_ud.0.log.err.txt
echo " Newbler ..."
# 454AllContigs.fna
newAssembly ${name}.newbler.0.d > ${name}.newbler.0.log.out.txt 2> ${name}.newbler.0.log.err.txt
addRun -lib PE ${name}.newbler.0.d ${indir}/${name}.pe_1.fq >> ${name}.newbler.0.log.out.txt 2>> ${name}.newbler.0.log.err.txt
addRun -lib PE ${name}.newbler.0.d ${indir}/${name}.pe_2.fq >> ${name}.newbler.0.log.out.txt 2>> ${name}.newbler.0.log.err.txt
addRun -lib SE ${name}.newbler.0.d ${indir}/${name}.se.fq >> ${name}.newbler.0.log.out.txt 2>> ${name}.newbler.0.log.err.txt
runProject -mi 95 -ml 20 -cpu ${threads} ${name}.newbler.0.d >> ${name}.newbler.0.log.out.txt 2>> ${name}.newbler.0.log.err.txt
echo " MEGAHIT ..."
# final.contigs.fa
megahit --mem-flag 2 -t ${threads} --min-contig-len ${cutoff} -o ${name}.megahit.0.d -m 0.9 --presets meta-large --12 ${indir}/${name}.pe.fq -r ${indir}/${name}.se.fq --min-count 1 --k-min 19 --k-max 51 --k-step 16 > ${name}.megahit.0.log.out.txt 2> ${name}.megahit.0.log.err.txt
echo " SPAdes ..."
# scaffolds.fasta
spades.py --phred-offset 33 --memory ${memlimitGB} -t ${threads} --cov-cutoff auto --12 ${indir}/${name}.pe.fq -s ${indir}/${name}.se.fq -o ${name}.spades.0.d > ${name}.spades.0.log.out.txt 2> ${name}.spades.0.log.err.txt
echo " metaSPAdes ..."
# scaffolds.fasta
metaspades.py --phred-offset 33 --memory ${memlimitGB} -t ${threads} --12 ${indir}/${name}.pe.fq -s ${indir}/${name}.se.fq -o ${name}.metaspades.0.d > ${name}.metaspades.0.log.out.txt 2> ${name}.metaspades.0.log.err.txt
echo " Minia ..."
# é necessário criar o diretório antes de rodar o minia (https://www.biostars.org/p/168676/)
# kak.contigs.fa
for k in {19..51..16}; do
echo " ${k} ..."
mkdir -p ./${name}.minia.$k.d
minia -nb-cores ${threads} -kmer-size $k -max-memory ${memlimitGB} -out-dir ${name}.minia.$k.d -out ${name}.minia.$k.d/kak -in ${indir}/${name}.fa > ${name}.minia.$k.log.out.txt 2> ${name}.minia.$k.log.err.txt
done
echo " ABySS ..."
# kak-scaffolds.fa
for k in {19..51..16}; do
echo " ${k} ..."
mkdir -p ./${name}.abyss.$k.d
rsep=`readlink -f ${indir}/${name}.abyss.se.fq`
rpep1=`readlink -f ${indir}/${name}.abyss.pe_1.fq`
rpep2=`readlink -f ${indir}/${name}.abyss.pe_2.fq`
cd ./${name}.abyss.$k.d
# não usar lib='pe' (pe é um argumento de abyss-pe)
abyss-pe k=${k} name=kak j=${threads} lib='pe1' pe1="${rpep1} ${rpep2}" se="${rsep}" e=2 c=2 s=100 N=1 n=1 S=${cutoff} scaffolds > ../${name}.abyss.$k.log.out.txt 2> ../${name}.abyss.$k.log.err.txt
cd ../
done
echo " Velvet ..."
# contigs.fa
for k in {19..51..16}; do
echo " ${k} ..."
velveth ${name}.velvet.$k.d $k -fastq -long ${indir}/${name}.se.fq -fastq -longPaired -interleaved ${indir}/${name}.pe.fq > ${name}.velveth.$k.log.out.txt 2> ${name}.velveth.$k.log.err.txt
velvetg ${name}.velvet.$k.d -exp_cov auto -cov_cutoff auto -scaffolding yes -conserveLong yes -min_contig_lgth ${cutoff} > ${name}.velvetg.$k.log.out.txt 2> ${name}.velvetg.$k.log.err.txt
done
echo " metaVelvet ..."
# meta-velvetg.contigs.fa
for k in {19..51..16}; do
echo " ${k} ..."
mkdir -p ${name}.metavelvet.$k.d
cd ${name}.metavelvet.$k.d/
find ../${name}.velvet.$k.d/ -maxdepth 1 -type f -exec ln -f -s {} \;
cd ../
meta-velvetg ${name}.metavelvet.$k.d -exp_cov auto -cov_cutoff auto -scaffolding yes -min_contig_lgth ${cutoff} > ${name}.metavelvetg.$k.log.out.txt 2> ${name}.metavelvetg.$k.log.err.txt
done
echo " Ray ..."
# Scaffolds.fasta
for k in {19..51..16}; do
echo " ${k} ..."
mpiexec -n ${threads} -num-cores ${threads} Ray -minimum-seed-length 50 -k ${k} -i ${indir}/${name}.pe.fq -s ${indir}/${name}.se.pq -o ${name}.ray.$k.d > ${name}.ray.$k.log.out.txt 2> ${name}.ray.$k.log.err.txt
done
echo " MetaPlatanus ..."
mkdir -p ${name}.meta_platanus.0.d/
# kak_finalClusters_all.fa
# The parameters -c and -C must be increased with large datasets add 1 for each 50000000
meta_platanus_n=$(wc -l ${indir}/${name}.pe_1.fq)
meta_platanus_cov=$(( $(echo "scale=0; (${meta_platanus_n}/50000000)" | bc -l)+1 ))
meta_platanus assemble -tmp ${TMP_DIR} -k 0.15 -K 0.5 -c ${meta_platanus_cov} -C ${meta_platanus_cov} -l ${cutoff_perc} -t ${threads} -m ${memlimitGB} -f ${indir}/${name}.pe_1.fq ${indir}/${name}.pe_2.fq ${indir}/${name}.se.fq -o ${name}.meta_platanus.0.d/kak > ${name}.meta_platanus-assemble.0.log.out.txt 2> ${name}.meta_platanus-assemble.0.log.err.txt
meta_platanus scaffold -tmp ${TMP_DIR} -k ${name}.meta_platanus.0.d/kak_kmer_occ.bin -t ${threads} -c ${name}.meta_platanus.0.d/kak_contig.fa -IP1 ${indir}/${name}.pe_1.fq ${indir}/${name}.pe_2.fq -o ${name}.meta_platanus.0.d/kak > ${name}.meta_platanus-scaffold.0.log.out.txt 2> ${name}.meta_platanus-scaffold.0.log.err.txt
cd ${name}.meta_platanus.0.d/
meta_platanus iterate -tmp ${TMP_DIR} -m ${memlimitGB} -t ${threads} -k kak_kmer_occ.bin -c kak_scaffold.fa -IP1 ${indir}/../${name}.pe_1.fq ${indir}/../${name}.pe_2.fq -o kak > ../${name}.meta_platanus-iterate.0.log.out.txt 2> ../${name}.meta_platanus-iterate.0.log.err.txt
meta_platanus cluster_scaffold -tmp ${TMP_DIR} -t ${threads} -c out_iterativeAssembly.fa -IP1 ${indir}/../${name}.pe_1.fq ${indir}/../${name}.pe_2.fq -o kak > ../${name}.meta_platanus-cluster_scaffold.0.log.out.txt 2> ../${name}.meta_platanus-cluster_scaffold.0.log.err.txt
if [ ! -e "kak_finalClusters_all.fa" ]; then
if [ ! -e "kak_contig.fa" ]; then
touch kak_contig.fa
fi
ln -f -s kak_contig.fa kak_finalClusters_all.fa
fi
cd ../
groups=($(printf "%s\n" ${groups[@]} ${name} | sort -u ))
done
assemstats3.py ${cutoff} *.idba_ud.*.d/scaffold.fa *.newbler.*.d/assembly/454AllContigs.fna *.megahit.*.d/final.contigs.fa *.spades.*.d/scaffolds.fasta *.metaspades.*.d/scaffolds.fasta *.minia.*.d/kak.contigs.fa *.velvet.*.d/contigs.fa *.metavelvet.*.d/meta-velvetg.contigs.fa *.ray.*.d/Scaffolds.fasta *.abyss.*.d/kak-scaffolds.fa *.meta_platanus.*.d/kak_finalClusters_all.fa > assemstats3.out.txt 2> assemstats3.err.txt
for g in ${groups[@]}; do
echo " Evaluating assembly of group ${g} ..."
calc-best-assembly.py -C ${cutoff} -q ${g}.{idba_ud.*.d/scaffold.fa,newbler.*.d/assembly/454AllContigs.fna,megahit.*.d/final.contigs.fa,spades.*.d/scaffolds.fasta,metaspades.*.d/scaffolds.fasta,minia.*.d/kak.contigs.fa,velvet.*.d/contigs.fa,metavelvet.*.d/meta-velvetg.contigs.fa,ray.*.d/Scaffolds.fasta,abyss.*.d/kak-scaffolds.fa,*.meta_platanus.*.d/kak_finalClusters_all.fa} -o ${g}.best.fa > calc-best-assembly.out.txt 2> calc-best-assembly.err.txt
done
multi-rename.py ${asmname} *.best.fa > final-assembly.fa
finalasm=($(printf "%s\n" ${finalasm[@]} "../${sampname}/assembled/final-assembly.fa" | sort -u ))
assemblathon_stats.pl final-assembly.fa > assemblathon_stats.out.txt 2> assemblathon_stats.err.txt
echo "Finish ${sampname} assembly"
cd ../../
done
# Fundindo montagens de amostras
echo "Merging assemblies ..."
mkdir -p ./assembled
cd ./assembled
### MeGAMerge
#MeGAMerge-1.1.pl -overlap=${cutoff} -minID=99 -cpu=${threads} -force -o=final-assembly.fa . ${finalasm[*]}
### usearch
cat ${finalasm[*]} > finalasm.tmp
usearch81 -cluster_fast finalasm.tmp -id 0.99 -sort size -threads ${threads} -centroids nr.fasta -uc clusters.uc -consout final-assembly.fa > usearch.out.txt 2> usearch.err.txt
rm -f finalasm.tmp
assemblathon_stats.pl MergedContigs.fasta > assemblathon_stats.out.txt 2> assemblathon_stats.err.txt
cd ../
echo "Finish Final Assembly (${asmname})"
cd ${curdir}
| true |
dfc1ecc97c74a3a8ac9fbdade72649ada91b5a53 | Shell | timmao78/bashScript | /ExpansionExamples.sh | UTF-8 | 340 | 3.3125 | 3 | [] | no_license | #!/usr/local/bin/bash
# Basic arithmetic using double parentheses
a=$(( 4 + 5 ))
echo $a
a=$((3+5))
echo $a
b=$(( a + 3 )) # We may include variables without the preceding $ sign.
echo $b
b=$(( $a + 4 )) # Variables can be included with the $ sign if you prefer.
echo $b
(( b++ ))
echo $b
(( b+= 3))
echo $b
a=$(( 4 * 5 ))
echo $a
| true |
2efb9aac0d7f336db66f93fda9d50eb79bcd5a2a | Shell | kholohan/JetPack | /src/update_upgrade/patch_ironic.sh | UTF-8 | 4,616 | 2.65625 | 3 | [
"Apache-2.0",
"LicenseRef-scancode-warranty-disclaimer"
] | permissive | #!/bin/bash
# Copyright (c) 2016-2017 Dell Inc. or its subsidiaries.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Configure a cleaning network so that the Bare Metal service, ironic, can use
# node cleaning.
configure_cleaning_network()
{
network_name="$1"
network_uuid=$(neutron net-list | grep "${network_name}" | awk '{print $2}')
sudo sed -i.bak "s/^.*cleaning_network_uuid.*$/cleaning_network_uuid\ =\ $network_uuid/" /etc/ironic/ironic.conf
sudo systemctl restart openstack-ironic-conductor.service
}
# This hacks in a patch to fix correct querying WSMAN Enumerations that have
# more than 100 entries. We will need to remove this after the fix appears
# in OSP10. Note that this patch must be here because we use this code prior
# to deploying the director.
echo
echo "## Patching Ironic iDRAC driver WSMAN library..."
OUT=$(sudo patch -b -s /usr/lib/python2.7/site-packages/dracclient/wsman.py ~/update_upgrade/wsman.patch)
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/wsman.pyc
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/wsman.pyo
echo "## Done."
# This hacks in a patch to work around a known issue where RAID configuration
# fails because the iDRAC is busy running an export to XML job and is not
# ready. Note that this patch must be here because we use this code prior to
# deploying the director.
echo
echo "## Patching Ironic iDRAC driver is_ready check..."
OUT=$(sudo patch -b -s /usr/lib/python2.7/site-packages/dracclient/resources/lifecycle_controller.py ~/update_upgrade/lifecycle_controller.patch)
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/resources/lifecycle_controller.pyc
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/resources/lifecycle_controller.pyo
OUT=$(sudo patch -b -s /usr/lib/python2.7/site-packages/dracclient/resources/uris.py ~/update_upgrade/uris.patch)
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/resources/uris.pyc
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/resources/uris.pyo
OUT=$(sudo patch -b -s /usr/lib/python2.7/site-packages/dracclient/client.py ~/update_upgrade/client.patch)
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/client.pyc
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/client.pyo
OUT=$(sudo patch -b -s /usr/lib/python2.7/site-packages/ironic/drivers/modules/drac/raid.py ~/update_upgrade/raid.patch)
sudo rm -f /usr/lib/python2.7/site-packages/ironic/drivers/modules/drac/raid.pyc
sudo rm -f /usr/lib/python2.7/site-packages/ironic/drivers/modules/drac/raid.pyo
echo "## Done."
# This hacks in a patch to work around a known issue where a RAID-10 virtual
# disk cannot be created from more than 16 backing physical disks. Note that
# this code must be here because we use this code prior to deploying the
# director.
echo
echo "## Patching Ironic iDRAC driver RAID library..."
OUT=$(sudo patch -b -s /usr/lib/python2.7/site-packages/dracclient/resources/raid.py ~/update_upgrade/dracclient_raid.patch)
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/resources/raid.pyc
sudo rm -f /usr/lib/python2.7/site-packages/dracclient/resources/raid.pyo
echo "## Done."
# This hacks in a patch to work around an issue where lock contention on the
# nodes in ironic can occur during RAID cleaning.
echo
echo "## Patching ironic.conf for locking..."
sudo sed -i 's/#node_locked_retry_attempts = 3/node_locked_retry_attempts = 15/' /etc/ironic/ironic.conf
echo "## Done."
echo
echo "## Restarting openstack-ironic-conductor.service..."
sudo systemctl restart openstack-ironic-conductor.service
echo "## Done."
# This hacks in a workaround to fix in-band introspection. A fix has been
# made to NetworkManager upstream, but is not currently present in OSP10.
# We will need to remove this after the fix appears in OSP10.
echo
echo "## Patching Ironic in-band introspection..."
sudo sed -i 's/initrd=agent.ramdisk /initrd=agent.ramdisk net.ifnames=0 biosdevname=0 /' /httpboot/inspector.ipxe
echo "## Done."
network="ctlplane"
echo
echo "## Configuring neutron network ${network} as a cleaning network"
configure_cleaning_network $network
echo "## Done."
| true |
9d896e1c65dcc20ab616dbf718efda2971ac433e | Shell | zobnin/android-tools | /00-cleanup.sh | UTF-8 | 1,184 | 2.828125 | 3 | [] | no_license | #!/sbin/sh
#
# Clean up CyanogenMod installation after install
# Deleted: all sounds, but one ringtone and notify,
# TTS languages, offline dicattion and few apps
#
# /system/addon.d/00-cleanup.sh
#
. /tmp/backuptool.functions
RINGTONE=Machina
NOTIFICATION=Argon
case "$1" in
backup)
# Stub
;;
restore)
# Rington sounds
cd /system/media/audio/ringtones/
rm [!${RINGTONE}]*.ogg
# Notify sounds
cd /system/media/audio/notifications/
rm [!${NOTIFICATION}]*.ogg
# Alarm sounds (all)
rm /system/media/audio/alarms/*
# TTS Languages
rm /system/tts/lang_pico/*
# Offline dictation
rm -rf /system/usr/srec/config/*
# Apps
A=/system/app/
rm $A/Email.apk
rm $A/Exchange2.apk
#rm $A/LockClock.apk
rm $A/PicoTts.apk
rm $A/Term.apk
#rm $A/ThemeChooser.apk
#rm $APPS/WAPPushManager.apk
rm $A/LiveWallpapers.apk
#rm $A/LiveWallpapersPicker.apk
rm $A/VisualizationWallpapers.apk
A=/system/priv-app/
rm $A/CMUpdater.apk
#rm $A/ThemeManager.apk
;;
pre-backup)
# Stub
;;
post-backup)
# Stub
;;
pre-restore)
# Stub
;;
post-restore)
# Stub
;;
esac
| true |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.