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python
def poisson_se_multiclust(data, k, n_runs=10, **se_params): """ Initializes state estimation using a consensus of several fast clustering/dimensionality reduction algorithms. It does a consensus of 8 truncated SVD - k-means rounds, and uses the basic nmf_init to create starting points. """ ...
python
def asm(code, addr=0, syntax=None, target=None, gnu_binutils_prefix=None): """ Assemble statements into machine readable code. Args: code(str): The statements to assemble. addr(int): The memory address where the code will run. syntax(AsmSyntax): The input assembler syntax for x86. D...
java
public SAMLEndpointResponse getSAMLAssertion(String usernameOrEmail, String password, String appId, String subdomain) throws OAuthSystemException, OAuthProblemException, URISyntaxException { return getSAMLAssertion(usernameOrEmail, password, appId, subdomain, null); }
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def calcMomentsMatlabEmpirical(params): """Top 3 alternatives 20 empirical moment conditions""" alpha = params[0] a = params[1:5] b = params[5:] p1 = alpha*a+(1-alpha)*b p21 = alpha*a[0]*a[1:]/(1-a[0])+(1-alpha)*b[0]*b[1:]/(1-b[0]) p22 = alpha*a[1]*np.hstack((a[0],a[2:]))/(1-a[1])+(1-alpha)*...
python
def patch_botocore_session_send(context, http_filter): """ Monkey patches botocore's vendored requests, if available. Overloads the Session class' send method to add tracing and metric collection. """ if BotocoreSession is None: return def send(self, *args, **kwargs): id = str(u...
java
@Override public void propagate(int evtmask) throws ContradictionException { for (int i = 0; i < n; i++) { color[i].set(i); size[i].set(1); mate[i] = -1; } ISet nei; for (int i = 0; i < n; i++) { nei = g.getMandNeighOf(i); for (int j : nei) { if (i < j) { enforce(i, j); } } } ...
python
def to_json_path(graph: BELGraph, path: str, **kwargs) -> None: """Write this graph to the given path as a Node-Link JSON.""" with open(os.path.expanduser(path), 'w') as f: to_json_file(graph, file=f, **kwargs)
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def matrix_undirected_unweighted(user): """ Returns an undirected, unweighted matrix where an edge exists if the relationship is reciprocated. """ matrix = matrix_undirected_weighted(user, interaction=None) for a, b in combinations(range(len(matrix)), 2): if matrix[a][b] is None or matri...
python
def _unassembled_reads1_out_file_name(self): """Checks file name is set for reads1 output. Returns absolute path.""" if self.Parameters['-1'].isOn(): unassembled_reads1 = self._absolute( str(self.Parameters['-1'].Value)) else: raise ValueError("...
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public static <T> int getIndex(List<T> l, T o, int fromIndex) { int i = -1; for (T o1 : l) { i++; if (i < fromIndex) { continue; } if (o.equals(o1)) { return i; } } return -1; }
java
public ContactService getContactService() { if (_contactService == null) { synchronized (CCApi2.class) { if (_contactService == null) { _contactService = _retrofit.create(ContactService.class); } } } return _contactServ...
java
public String handleAddException(SQLException e, ItemData item) throws RepositoryException, InvalidItemStateException { if (e instanceof BatchUpdateException) { // gets original exception if (e.getNextException() != null) { e = e.getNextException(); }...
python
def perform(self, command, params=None, **kwargs): """Execute a command. Arguments can be supplied either as a dictionary or as keyword arguments. Examples: stc.perform('LoadFromXml', {'filename':'config.xml'}) stc.perform('LoadFromXml', filename='config.xml') ...
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protected Bbox getTotalBounds(List<Feature> features) { Bbox total = null; for (Feature featureDto : features) { org.geomajas.geometry.Geometry geom = featureDto.getGeometry(); if (geom != null) { Bbox b = GeometryService.getBounds(geom); if (total == null) { total = b; } else { total = ...
python
def update_snapshots(self): """Update list of EBS Snapshots for the account / region Returns: `None` """ self.log.debug('Updating EBSSnapshots for {}/{}'.format(self.account.account_name, self.region)) ec2 = self.session.resource('ec2', region_name=self.region) ...
python
def set_autoreload_params(self, scan_interval=None, ignore_modules=None): """Sets autoreload related parameters. :param int scan_interval: Seconds. Monitor Python modules' modification times to trigger reload. .. warning:: Use only in development. :param list|st|unicode ignore_mod...
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private double nextRadicalInverse() { counter++; // Do at most MAXFAST appromate steps if(counter >= MAXFAST) { counter = 0; inverse += MAXFAST; current = radicalInverse(inverse); return current; } // Fast approximation: double nextInverse = current + invbase; if(next...
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def start_pan(self, x, y, button): """ Called when a pan operation has started. *x*, *y* are the mouse coordinates in display coords. button is the mouse button number: * 1: LEFT * 2: MIDDLE * 3: RIGHT .. note:: Intended to be overridden by...
java
public String gaAccessor(final EObject ele) { String _switchResult = null; boolean _matched = false; if (ele instanceof AbstractElement) { _matched=true; _switchResult = this.gaRuleElementAccessor(((AbstractElement)ele)); } if (!_matched) { if (ele instanceof AbstractRule) { ...
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public static JsonParser createJsonParser(CoronaConf conf) throws IOException { InputStream inputStream = new FileInputStream(conf.getCMStateFile()); if (conf.getCMCompressStateFlag()) { inputStream = new GZIPInputStream(inputStream); } ObjectMapper mapper = new ObjectMapper(); mapper.conf...
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public Boolean challenge() { if( (this.hub_mode.equals("subscribe")) && (this.hub_verify_token.equals(this.configs.get("verify_token", ""))) ){ Logger.info("Verify token validated successfully."); return true; } Logger.error("Error validating verify token."); ...
python
def _client_send(self, msg): """Sends an Rpc message through the connection. Args: msg: string, the message to send. Raises: Error: a socket error occurred during the send. """ try: self._client.write(msg.encode("utf8") + b'\n') s...
python
def show(self, view: View, request: Request): """Show the welcome page. Arguments: view {masonite.view.View} -- The Masonite view class. Application {config.application} -- The application config module. Returns: masonite.view.View -- The Masonite view class...
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public T create(final Class<T> klass) { T obj; try { obj = (T) klass.newInstance(); } catch (IllegalAccessException e) { throw new DocrepException(e); } catch (InstantiationException e) { throw new DocrepException(e); } add(obj); return obj; }
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public void centerOnTile (int tx, int ty) { Rectangle trect = MisoUtil.getTilePolygon(_metrics, tx, ty).getBounds(); int nx = trect.x + trect.width/2 - _vbounds.width/2; int ny = trect.y + trect.height/2 - _vbounds.height/2; // Log.info("Centering on t:" + StringUtil.coordsToString(t...
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public static <E extends Enum<E>> EnumSet<E> processBitVectors(final Class<E> enumClass, final long... values) { final EnumSet<E> results = EnumSet.noneOf(asEnum(enumClass)); final long[] lvalues = ArrayUtils.clone(Validate.notNull(values)); ArrayUtils.reverse(lvalues); for (final E cons...
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protected Object lookupWalkForVar(String var) { JsonNode current = node; while (current!=null) { Object result = lookupVar(current, var); if (result!=null) return result; if (current.hasAttribute("inheritProperties")) { current = current.getParent(); } else { current = null; } } r...
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private static PatternData getPatternData(ULocale locale, String calType) { ICUResourceBundle rb = (ICUResourceBundle) UResourceBundle.getBundleInstance(ICUData.ICU_BASE_NAME, locale); ICUResourceBundle dtPatternsRb = rb.findWithFallback("calendar/" + calType + "/DateTimePatterns"); ...
python
def submit(self, task): """ :type task: Task """ if self.api_url == 'http://STUB_URL': logging.info(u'STARTER CLIENT DEV MODE Задача условно поставлена') return url = self.api_url + '/services/' + task.serviceId + '/tasks' last_e = None fo...
python
def scale(data, zero_center=True, max_value=None, copy=False) -> Optional[AnnData]: """Scale data to unit variance and zero mean. .. note:: Variables (genes) that do not display any variation (are constant across all observations) are retained and set to 0 during this operation. In the ...
java
public static boolean canUseAsDelayedQueue(final Jedis jedis, final String key) { final String type = jedis.type(key); return (ZSET.equalsIgnoreCase(type) || NONE.equalsIgnoreCase(type)); }
java
@XmlElementDecl(namespace = "http://docs.oasis-open.org/ns/cmis/messaging/200908/", name = "maxItems", scope = Query.class) public JAXBElement<BigInteger> createQueryMaxItems(BigInteger value) { return new JAXBElement<BigInteger>(_GetTypeChildrenMaxItems_QNAME, BigInteger.class, Query.class, value); }
java
private void deployNetwork(final NetworkContext context, final Handler<AsyncResult<NetworkContext>> doneHandler) { log.debug(String.format("%s - Deploying network", NetworkManager.this)); final CountingCompletionHandler<Void> complete = new CountingCompletionHandler<Void>(context.components().size()); compl...
java
public static void mergeDependencies(final Dependency dependency, final Dependency relatedDependency, final Set<Dependency> dependenciesToRemove) { dependency.addRelatedDependency(relatedDependency); for (Dependency d : relatedDependency.getRelatedDependencies()) { dependency.add...
python
def discrete_gaussian_curvature_measure(mesh, points, radius): """ Return the discrete gaussian curvature measure of a sphere centered at a point as detailed in 'Restricted Delaunay triangulations and normal cycle', Cohen-Steiner and Morvan. Parameters ---------- points : (n,3) float, list ...
java
public Observable<PersistedFace> addPersonFaceFromStreamAsync(String personGroupId, UUID personId, byte[] image, AddPersonFaceFromStreamOptionalParameter addPersonFaceFromStreamOptionalParameter) { return addPersonFaceFromStreamWithServiceResponseAsync(personGroupId, personId, image, addPersonFaceFromStreamOpti...
python
def get_notes(ref_key, ref_id, **kwargs): """ Get all the notes for a resource, identifed by ref_key and ref_ido. Returns [] if no notes are found or if the resource doesn't exist. """ notes = db.DBSession.query(Note).filter(Note.ref_key==ref_key) if ref_key == 'NETWORK': notes =...
python
def _attach_endpoints(self): """Dynamically attaches endpoint callables to this client""" for name, value in inspect.getmembers(self): if inspect.isclass(value) and issubclass(value, self._Endpoint) and (value is not self._Endpoint): endpoint_instance = value(self.requester) ...
python
def list_installed_files(self): """ Iterates over the ``installed-files.txt`` entries and returns a tuple ``(path, hash, size)`` for each line. :returns: a list of (path, hash, size) """ def _md5(path): f = open(path, 'rb') try: c...
python
def configure_logger(simple_name, log_dest=None, detail_level=DEFAULT_LOG_DETAIL_LEVEL, log_filename=DEFAULT_LOG_FILENAME, connection=None, propagate=False): # pylint: disable=line-too-long """ Configure the pywbem loggers and optionally activat...
java
Object getValue(Object obj, String attributePath, Object metadata) throws Exception { return getValue(obj, attributePath); }
java
public static Symmetry454Date now(Clock clock) { LocalDate now = LocalDate.now(clock); return Symmetry454Date.ofEpochDay(now.toEpochDay()); }
python
def Normalize(self, fraction=1.0): """Normalizes this PMF so the sum of all probs is fraction. Args: fraction: what the total should be after normalization Returns: the total probability before normalizing """ if self.log: raise ValueError("Pmf is under ...
java
public static String checkAndNormalizeRootPath(String path) throws IllegalArgumentException { path = PathUtils.normalizeUnixStylePath(path); //check the path is not trying to go upwards. if (!PathUtils.isNormalizedPathAbsolute(path)) { throw new IllegalArgumentException(); }...
python
def rst_to_html(in_rst, stderr): """Renders HTML from an RST fragment. :param string in_rst: An rst formatted string. :param stderr: An open stream to use for docutils stderr output. :returns: A tuple of (html rendered rst, return code) """ if not in_rst: return '', 0 # Unfortunately, docutils is re...
java
public int compareMethods(BugCollection lhsCollection, BugCollection rhsCollection, MethodAnnotation lhsMethod, MethodAnnotation rhsMethod) { if (lhsMethod == null || rhsMethod == null) { return compareNullElements(lhsMethod, rhsMethod); } // Compare for exact match ...
python
def onestep(self, *, direction=FORWARD, style=SINGLE): """Performs one step of a particular style. The actual rotation amount will vary by style. `SINGLE` and `DOUBLE` will normal cause a full step rotation. `INTERLEAVE` will normally do a half step rotation. `MICROSTEP` will perform the s...
java
public boolean putMulti(MultiItem<T> items, int maxWait, TimeUnit unit) throws Exception { checkState(); String path = makeItemPath(); return internalPut(null, items, path, maxWait, unit); }
java
private CreateSubnetResponseType createSubnet(final String vpcId, final String cidrBlock) { CreateSubnetResponseType ret = new CreateSubnetResponseType(); ret.setRequestId(UUID.randomUUID().toString()); MockSubnet mockSubnet = mockSubnetController.createSubnet(cidrBlock, vpcId); SubnetT...
java
@Nonnull public static NetLegacyOptions none(@Nonnull NetdevNoneOptions none) { NetLegacyOptions self = new NetLegacyOptions(); self.type = NetLegacyOptionsType.none; self.none = none; return self; }
java
@Override public void registerListener(LifecycleListener listener) { if(listener == null) throw new NullPointerException("listener is null"); synchronized(_lock) { if(_listeners == null || !_listeners.contains(listener)) { Set<LifecycleListener> listeners = new HashSet<Lifecyc...
java
@Override public CPRuleUserSegmentRel fetchByCPRuleId_Last(long CPRuleId, OrderByComparator<CPRuleUserSegmentRel> orderByComparator) { int count = countByCPRuleId(CPRuleId); if (count == 0) { return null; } List<CPRuleUserSegmentRel> list = findByCPRuleId(CPRuleId, count - 1, count, orderByComparato...
java
public Optional<ExternalServiceAlertCondition> show(long policyId, long conditionId) { Optional<ExternalServiceAlertCondition> ret = Optional.absent(); Collection<ExternalServiceAlertCondition> conditions = list(policyId); for(ExternalServiceAlertCondition condition : conditions) { ...
java
@SuppressWarnings("deprecation") public org.opensaml.saml2.core.Response authenticate(String username, String password) throws IOException, AuthenticationException, SOAPClientException { // -- Connecting to SP, defer processing to parent class ------------------------------ HttpResponse res = super.execute(new...
java
@Override public Tuple createTuple(EntityKeyMetadata entityKeyMetadata, OperationContext operationContext) { return identityColumnAwareGridDialect.createTuple( entityKeyMetadata, operationContext ); }
python
def match_ref(self, ref): """ Check if the ref matches one the concept's aliases. If so, mark the matched ref so that we use it as the column label. """ if ref in self.refs: self._matched_ref = ref return True return False
python
def breakLines(self, width): """ Returns a broken line structure. There are two cases A) For the simple case of a single formatting input fragment the output is A fragment specifier with - kind = 0 - fontName, fontSize, leading, textColor ...
java
public static Execution newInstance(Specification specification, SystemUnderTest systemUnderTest, XmlReport xmlReport, String sections) { Execution execution = Execution.newInstance(specification, systemUnderTest, xmlReport ); execution.setSections(sections); return execution; }
python
def _add_metadata_as_attrs_da(data, units, description, dtype_out_vert): """Add metadata attributes to DataArray""" if dtype_out_vert == 'vert_int': if units != '': units = '(vertical integral of {0}): {0} kg m^-2)'.format(units) else: units = '(vertical integral of quant...
java
private static boolean isNotSREEntry(IRuntimeClasspathEntry entry) { try { final File file = new File(entry.getLocation()); if (file.isDirectory()) { return !SARLRuntime.isUnpackedSRE(file); } else if (file.canRead()) { return !SARLRuntime.isPackedSRE(file); } } catch (Throwable e) { SARLEcli...
python
def stop_instance(self, fast=False): """ I attempt to stop a running VM. I make sure any connection to the worker is removed. If the VM was using a cloned image, I remove the clone When everything is tidied up, I ask that bbot looks for work to do """ log.msg("Att...
python
def get_configurations(self, project, repository_type=None, repository_id=None, branch=None, service_connection_id=None): """GetConfigurations. [Preview API] Gets a list of existing configuration files for the given repository. :param str project: Project ID or project name :param str re...
python
def callback(self, msg): """Accept a message that was published, process and forward Parameters ---------- msg : tuple, (str, str, str) The message sent over the line. The `tuple` is of the form: (message_type, channel, payload). Notes ----- ...
java
public void hideFloatWindow(Activity activity) { HMSAgentLog.i("hideFloatWindow"); isShowFloatWindowCalled = false; showFinal(false, activity, ApiClientMgr.INST.getApiClient()); }
java
public static String buildKey(final RegisteredService service) { return service.getId() + ";" + service.getName() + ';' + service.getServiceId(); }
java
private AjaxFormComponentUpdatingBehavior createAjax(final QueryParameter parameter, final IModel model, final Component component, final String time) { return new AjaxFormComponentUpdatingBehavior("onchange") { @SuppressWarnings("unchecked") @Override protected void onUpdate(AjaxReq...
python
def get_capability_report(self, raw=True, cb=None): """ This method retrieves the Firmata capability report :param raw: If True, it either stores or provides the callback with a report as list. If False, prints a formatted report to the console :...
python
def get_export_configuration(self, config_id): """ Retrieve the ExportConfiguration with the given ID :param string config_id: ID for which to search :return: a :class:`meteorpi_model.ExportConfiguration` or None, or no match was found. """ sql = ...
java
protected synchronized void removeShapeGeometryChangeListener(ShapeGeometryChangeListener listener) { assert listener != null : AssertMessages.notNullParameter(); if (this.geometryListeners != null) { this.geometryListeners.remove(listener); if (this.geometryListeners.isEmpty()) { this.geometryListeners =...
python
def calculateAxis(self, axis, size, minDelta): """ Calculates the rendering information for the given axis based on the current size and the minimum required delta. :param axis | <XChartAxis> size | <int> minDelta | <in...
java
public static Long getLong(Map<?, ?> map, Object key) { return get(map, key, Long.class); }
java
public boolean rowContainsKey(String key) { String resolvedKey = resolveRowKey(key); return rowMap.containsKey(resolvedKey) || parent != null && parent.rowContainsKey(resolvedKey); }
python
def ast_from_value(value: Any, type_: GraphQLInputType) -> Optional[ValueNode]: """Produce a GraphQL Value AST given a Python value. A GraphQL type must be provided, which will be used to interpret different Python values. | JSON Value | GraphQL Value | | ------------- | ----------------...
python
def to_kaf(self): """ Converts the element to NAF """ if self.type == 'NAF': ##convert all the properties for node in self.node.findall('properties/property'): node.set('pid',node.get('id')) del node.attrib['id']
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public static synchronized PeriodType forFields(DurationFieldType[] types) { if (types == null || types.length == 0) { throw new IllegalArgumentException("Types array must not be null or empty"); } for (int i = 0; i < types.length; i++) { if (types[i] == null) { ...
java
public void run() { m_strFileName = this.getProperty("fileName"); if (m_strFileName == null) m_strFileName = Constants.BLANK; m_strPackage = this.getProperty("package"); if (m_strPackage == null) m_strPackage = Constants.BLANK; m_strProjectID = this.ge...
java
public void setupProxy() throws InvalidProxyException { // are we running through a proxy if (Property.isProxySet()) { // set the proxy information Proxy proxy = new Proxy(); proxy.setHttpProxy(Property.getProxy()); desiredCapabilities.setCapability(Capabi...
java
public BuildStepInner get(String resourceGroupName, String registryName, String buildTaskName, String stepName) { return getWithServiceResponseAsync(resourceGroupName, registryName, buildTaskName, stepName).toBlocking().single().body(); }
python
def ping(hostname: str, timeout_s: int = 5) -> bool: """ Pings a host, using OS tools. Args: hostname: host name or IP address timeout_s: timeout in seconds Returns: was the ping successful? """ if sys.platform == "win32": timeout_ms = timeout_s * 1000 ...
java
@Override public Connection getOrCreate() throws SQLException { Connection con = DriverManager.getConnection(this.url, this.user, this.password); con.setAutoCommit(isAutoCommitEnabled()); return con; }
java
private static <T> void acceptResult(CompletableCompletionStage<T> s, Supplier<? extends T> supplier) { try { // exception can be thrown only by supplier. All callbacks are generated by us and they do not throw any exceptions s.complete(supplier.get()); } catch (Throwable e) { ...
java
public FastAdapterBottomSheetDialog<Item> withOnPreClickListener(com.mikepenz.fastadapter.listeners.OnClickListener<Item> onPreClickListener) { this.mFastAdapter.withOnPreClickListener(onPreClickListener); return this; }
python
def run(self): """Called when the process has started :param int port: The HTTP Server port """ LOGGER.debug('Initializing process') # Setup logging self.logging_config = self.setup_logging() # Register the signal handlers self.setup_signal_handlers() ...
java
private JsonObject lookForRelation(String oid, String field, JsonSimple config, JsonSimple baseNode) { JsonObject newRelation = new JsonObject(); newRelation.put("field", field); newRelation.put("authority", true); // ** -1- ** EXCLUSIONS List<String> exPath = config.getStringList("excludeCondition", "pat...
java
public List<Link> connect(int bandwidth, Switch sw, Node... nodes) { List<Link> l = new ArrayList<>(); for (Node n : nodes) { l.add(connect(bandwidth, sw, n)); } return l; }
java
public void setYear(int year){ if(mAdapter.getYear() == year) return; mAdapter.setYear(year); goTo(year); }
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public Observable<ServiceResponse<Page<RemoteLoginInformationInner>>> listRemoteLoginInformationSinglePageAsync(final String resourceGroupName, final String workspaceName, final String clusterName) { if (resourceGroupName == null) { throw new IllegalArgumentException("Parameter resourceGroupName is ...
java
public static policypatset[] get_filtered(nitro_service service, filtervalue[] filter) throws Exception{ policypatset obj = new policypatset(); options option = new options(); option.set_filter(filter); policypatset[] response = (policypatset[]) obj.getfiltered(service, option); return response; }
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@SuppressWarnings("unchecked") @Override public T lessThan(final String col, final Object value) { context().param(CaseFormat.CAMEL_CASE.convert(col), new LessThan(col, value)); this.useOperator = true; return (T) this; }
python
def groupby(self, keyexpr, **outexprs): """simple prototype of group by, with support for expressions in the group-by clause and outputs @param keyexpr: grouping field and optional expression for computing the key value; if a string is passed @type keyexpr: stri...
python
def json_encoder_default(obj): """Handle more data types than the default JSON encoder. Specifically, it treats a `set` and a `numpy.array` like a `list`. Example usage: ``json.dumps(obj, default=json_encoder_default)`` """ if np is not None and hasattr(obj, 'size') and hasattr(obj, 'dtype'): ...
java
private static String join(double[] seriesData, String separator) { // two or more elements StringBuilder sb = new StringBuilder(256); // Java default is 16, probably too small sb.append(seriesData[0]); for (int i = 1; i < seriesData.length; i++) { if (separator != null) { sb.append(sepa...
java
@Override public IEntity getEntity(String key, Class type) throws GroupsException { return getEntity(key, type, null); }
java
public static String valueParameters(String value, Map parameters) { if (value==null) return null; int i = value.indexOf(';'); if (i<0) return value; if (parameters==null) return value.substring(0,i).trim(); StringTokenizer tok1 =...
java
public void writeFree() { Record recClassInfo = this.getMainRecord(); ClassFields recClassFields = new ClassFields(this); try { String strFieldName; String strFieldClass; // Now, zero out all the class fields recClassFields.setKeyArea(C...
python
def getOutputDevice(self, textureType): """ * Returns platform- and texture-type specific adapter identification so that applications and the compositor are creating textures and swap chains on the same GPU. If an error occurs the device will be set to 0. pInstance is an optional...
python
def exclude_args(parser, args, excluded_args, target): """Delete options that are not appropriate for a following code path; exit with an error if excluded options were passed in by the user. argparse generates a namespace with all options it knows, but not every attribute should be passed to all code ...
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protected ArchiveReader getArchiveReader(final String f, final InputStream is, final boolean atFirstRecord) throws IOException { // Check if it's compressed, based on file extension. if( f.endsWith(".gz") ) { return new CompressedWARCReader(f, is, atFirstRecord); } else { return new Unc...
java
protected String decode(String html) throws Exception { String result=StringEscapeUtils.unescapeHtml4(html); return result; }
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def compose(scripts, name='main', description=None, prog=None, version=None): """ Collects together different scripts and builds a single script dispatching to the subparsers depending on the first argument, i.e. the name of the subparser to invoke. :param scripts: a list of script inst...