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java
@Deprecated private void onStepProgress(Object source) { onStartStepProgress(null, source); // if there is only one step close it and move to the next one if (this.currentStep.getParent().getChildren().size() == 1) { this.currentStep = this.currentStep.getParent().nextStep(n...
java
public SimpleConfiguration orElse(SimpleConfiguration fallback) { SimpleConfiguration copy = new SimpleConfiguration(this); for (Map.Entry<String, String> entry : fallback.toMap().entrySet()) { if (!copy.containsKey(entry.getKey())) { copy.setProperty(entry.getKey(), entry.getValue()); } ...
java
@Override public Object create(ActionParameter argument, Context context, ParameterFactories engine) { if (argument.getRawType().equals(Context.class)) { return context; } // Check whether we have a ParameterFactory that can handle the creation. Set<Class> handled = engi...
python
def check_version(i): """ Input: { version - your version (string) } Output: { return - return code = 0 ok - if 'yes', your CK kernel version is outdated current_version - your CK kernel version } ...
python
def lookup_comments(self, reverse=False): "Implement as required by parent to lookup comments in file system." comments = [] if self.thread_id is None: self.thread_id = self.lookup_thread_id() path = self.thread_id with open(self.thread_id, 'r', newline='') as fdesc:...
python
def make_instance(cls, data): """Validate the data and create a model instance from the data. Args: data (dict): The unserialized data to insert into the new model instance through it's constructor. Returns: peewee.Model|sqlalchemy.Model: The model insta...
java
public static WebhookEndpoint retrieve(String webhookEndpoint) throws StripeException { return retrieve(webhookEndpoint, (Map<String, Object>) null, (RequestOptions) null); }
java
private String addVersionQualifierToQualifiers(String qualifiers) { int versionQualifierApiLevel = ResBundle.getVersionQualifierApiLevel(qualifiers); if (versionQualifierApiLevel == -1) { if (qualifiers.length() > 0) { qualifiers += "-"; } qualifiers +...
java
protected void log( Throwable t ) { if( _logger == null ) { t.printStackTrace(); } else { _logger.warn( "Error running job.", t ); } }
python
def update_user_password(new_pwd_user_id, new_password,**kwargs): """ Update a user's password """ #check_perm(kwargs.get('user_id'), 'edit_user') try: user_i = db.DBSession.query(User).filter(User.id==new_pwd_user_id).one() user_i.password = bcrypt.hashpw(str(new_password).encod...
java
@Override protected ObjectAdapter adapterFor(final Object targetObject) { if(targetObject instanceof OidDto) { final OidDto oidDto = (OidDto) targetObject; final Bookmark bookmark = Bookmark.from(oidDto); final RootOid rootOid = RootOid.create(bookmark); retur...
python
def removeSettingsGroup(groupName, settings=None): """ Removes a group from the persistent settings """ logger.debug("Removing settings group: {}".format(groupName)) settings = QtCore.QSettings() if settings is None else settings settings.remove(groupName)
python
def create_run(cls, *args, **kwargs): """ :return: a delegator function that calls the ``cls`` constructor whose arguments being a seed tuple followed by supplied ``*args`` and ``**kwargs``, then returns the object's ``run`` method. By default, a thread wrapping that ``run`` method ...
java
private void addComplementaryThreadContextConfigurationsTo(ContextServiceImpl contextSvc) { final boolean trace = TraceComponent.isAnyTracingEnabled(); lock.writeLock().lock(); try { // Detect and stop infinite recursion from baseContextRef if (lock.getWriteHoldCount() >...
java
@Override public <T> long insertObject(String name, T obj) throws CpoException { return processUpdateGroup(obj, CpoAdapter.CREATE_GROUP, name, null, null, null); }
java
@NullSafe @Override public boolean accept(File pathname) { return (pathname != null && pathname.canExecute() == executable); }
java
@Action(name = "Operating System Detector", outputs = { @Output(RETURN_RESULT), @Output(RETURN_CODE), @Output(OS_FAMILY), @Output(OS_NAME), @Output(OS_ARCHITECTURE), @Output(OS_VERSION), ...
python
def _clone(self, shallowClone): """Retry if clone failed""" command = ['clone'] switchToBranch = False if self.supportsBranch and self.branch != 'HEAD': if self.branch.startswith('refs/'): # we can't choose this branch from 'git clone' directly; we ...
java
@SuppressWarnings("unchecked") protected ResultQueueEntry<T> toResultQueueEntryForEquals(Object obj) { if (!(obj instanceof ResultQueueEntry) || obj == null) { return null; } ResultQueueEntry<T> other = (ResultQueueEntry<T>) obj; return type == other.type && getClass() == other.getClass() ? othe...
java
@Override @Autowired(required = false) public void setSamlLogger(SAMLLogger samlLogger) { Assert.notNull(samlLogger, "SAMLLogger can't be null"); this.samlLogger = samlLogger; }
python
def Start(self): """Calls the Update() method of a given VFSFile/VFSDirectory object.""" self.Init() fd = aff4.FACTORY.Open(self.args.vfs_file_urn, mode="rw", token=self.token) # Account for implicit directories. if fd.Get(fd.Schema.TYPE) is None: fd = fd.Upgrade(standard.VFSDirectory) s...
java
public static Polygon buffer(Geometry geometry, SpatialReference spatialReference, double distance) { double bufferDistance = distance; OperatorBuffer op = (OperatorBuffer) factory .getOperator(Operator.Type.Buffer); Geometry result = op.execute(geometry, spatialReference, bufferDistance, null); ret...
java
public void batchSave(Object... objectsToSave) { batchWrite(Arrays.asList(objectsToSave), Collections.emptyList(), this.config); }
python
def lasio_get(l, section, item, attrib='value', default=None, remap=None, funcs=None): """ Grabs, renames and transforms stuff from a lasio object. Args: l (lasio): a lasio instance. section (str): The LAS s...
java
public double[] homogeneRelativeVector(double[] v) { assert (v.length == dim); // TODO: this only works properly when trans[dim][dim] == 1.0, right? double[] dv = Arrays.copyOf(v, dim + 1); dv[dim] = 0.0; return dv; }
java
@Override public boolean eIsSet(int featureID) { switch (featureID) { case AfplibPackage.BDT__DOC_NAME: return DOC_NAME_EDEFAULT == null ? docName != null : !DOC_NAME_EDEFAULT.equals(docName); case AfplibPackage.BDT__RESERVED: return RESERVED_EDEFAULT == null ? reserved != null : !RESERVED_EDEFAULT.equ...
python
def split_trailing_comment(line: str) -> str: """Takes a line and splits it into two parts (code_part, comment_part) where code_part is the line up to but not including any trailing comment (the '!' comment character and subsequent characters to the end of the line), while comment_part is the trailing c...
java
public static CmsHistoryVersion fromString(String s) { List<String> l = CmsStringUtil.splitAsList(s, ":"); if (l.size() == 2) { Integer ver = null; try { ver = Integer.valueOf(l.get(0)); } catch (Exception e) { // } ...
java
public List<ServletMappingType<WebFragmentType<T>>> getAllServletMapping() { List<ServletMappingType<WebFragmentType<T>>> list = new ArrayList<ServletMappingType<WebFragmentType<T>>>(); List<Node> nodeList = childNode.get("servlet-mapping"); for(Node node: nodeList) { ServletMappingT...
python
def triples(self, pattern: QueryTriple): """ Return the triples that match pattern :param pattern: `(s, p, o)` tuple, with `None` as wild cards :return: Generator for resulting triples """ self.total_calls += 1 if self.graph_name is not None: gn = "?g" if not...
java
public Long getToLong() { if (m_long == null) { try { m_long = new Long(Long.parseLong(getToString())); } catch (NumberFormatException e) { LOG.info(e.getLocalizedMessage()); } } return m_long; }
java
private void printInstruction(String instruction) { System.out.println(StringUtils.repeat("-", instruction.length())); System.out.println(instruction); System.out.println(StringUtils.repeat("-", instruction.length())); }
java
@Override public EClass getLongAction() { if (longActionEClass == null) { longActionEClass = (EClass) EPackage.Registry.INSTANCE.getEPackage(StorePackage.eNS_URI).getEClassifiers().get(33); } return longActionEClass; }
python
async def close(self): """ Close this request, send all data. You can still run other operations in the handler. """ if not self._sendHeaders: self._startResponse() if self.inputstream is not None: self.inputstream.close(self.connection.scheduler) ...
java
@Override public void write(String text, String contentType) { assertArgumentNotNull("text", text); assertArgumentNotNull("contentType", contentType); doWrite(text, contentType); }
python
def load_data(self, pdbid): """Loads and parses an XML resource and saves it as a tree if successful""" f = urlopen("http://projects.biotec.tu-dresden.de/plip-rest/pdb/%s?format=xml" % pdbid.lower()) self.doc = etree.parse(f)
java
public double addAndGet(double amount) { long v; double d; double n; long next; do { v = value.get(); d = Double.longBitsToDouble(v); n = d + amount; next = Double.doubleToLongBits(n); } while (!value.compareAndSet(v, next)); return n; }
java
private Map<String, String> getVariantMap(ResourceBundlesHandler bundlesHandler, String contextPath, String bundlePath) { JoinableResourceBundle bundle = bundlesHandler.resolveBundleForPath(bundlePath); Set<String> variantTypes = bundle.getVariants().keySet(); String variantKey = getVariantKey(contextPath); ...
java
public static String createSecret() { Random random = new SecureRandom(); StringBuilder buffer = new StringBuilder(BYTES_SECRET); for (int i = 0; i < BYTES_SECRET; i++) { int value = random.nextInt(MAX_CHARACTERS); if (value < ITERATIONS) { buffer.append((...
python
def validate(self, validation_instances, metrics, iteration=None): ''' Evaluate this model on `validation_instances` during training and output a report. :param validation_instances: The data to use to validate the model. :type validation_instances: list(instance.Instance) ...
java
public void fatal( final Object message ) { if( m_delegate.isFatalEnabled() && message != null ) { m_delegate.fatal( message.toString(), null ); } }
python
def hashdata(self, subject): _data = bytearray() if isinstance(subject, six.string_types): subject = subject.encode('charmap') """ All signatures are formed by producing a hash over the signature data, and then using the resulting hash in the signature algorithm. ...
java
public Object getObject() throws Exception { if (converterConfigList==null) { throw new FactoryBeanNotInitializedException("converterConfigList has not been set"); } ConverterManagerImpl result = new ConverterManagerImpl(); for (ConverterConfig converterConfig : conv...
java
public static void sendPing(final PooledByteBuffer pooledData, final WebSocketChannel wsChannel, final WebSocketCallback<Void> callback) { sendInternal(pooledData, WebSocketFrameType.PING, wsChannel, callback, null, -1); }
java
public static String[] getServiceName(String[] argv, String[] serviceId) throws IllegalArgumentException { ArrayList<String> newArgvList = new ArrayList<String>(); for (int i = 0; i < argv.length; i++) { if ("-service".equals(argv[i])) { if (i+1 == argv.length ) { throw new Illega...
java
public static String updateProperties( String propertiesContent, Map<String,String> keyToNewValue ) { for( Map.Entry<String,String> entry : keyToNewValue.entrySet()) { propertiesContent = propertiesContent.replaceFirst( "(?mi)^\\s*" + entry.getKey() + "\\s*[:=][^\n]*$", entry.getKey() + " = " + entry.ge...
python
def get_subject_with_local_validation(jwt_bu64, cert_obj): """Validate the JWT and return the subject it contains. - The JWT is validated by checking that it was signed with a CN certificate. - The returned subject can be trusted for authz and authn operations. - Possible validation errors include: ...
python
def compute_classpath(cls, targets, classpath_products, extra_classpath_tuples, confs): """Return the list of classpath entries for a classpath covering the passed targets. Filters and adds paths from extra_classpath_tuples to the end of the resulting list. As compute_classpath_entries but expects and ret...
python
def get_valid_filename(s): """ Shamelessly taken from Django. https://github.com/django/django/blob/master/django/utils/text.py Return the given string converted to a string that can be used for a clean filename. Remove leading and trailing spaces; convert other spaces to underscores; and remov...
python
def split_files(files, split_train, split_val, use_test): """Splits the files along the provided indices """ files_train = files[:split_train] files_val = files[split_train:split_val] if use_test else files[split_train:] li = [(files_train, 'train'), (files_val, 'val')] # optional test folder ...
java
private double getDepthFromRootPathMap() throws WikiApiException { int max = 0; for (List<Integer> path : getRootPathMap().values()) { if (path.size() > max) { max = path.size(); } } max = max - 1; // depth is measured in nodes, not edges ...
python
def Nasv(macs,T): ''' Returns ------- Na*<sigma v> for MACS [mb] at T [K]. ''' Na = avogadro_constant k = boltzmann_constant vtherm=(2.*k*T/mass_H_atom)**0.5 s = macs*1.e-27 Nasv = s*vtherm*Na return Nasv
python
def build_genome_alignment_from_directory(d_name, ref_spec, extensions=None, index_exts=None, fail_no_index=False): """ build a genome aligment by loading all files in a directory. Fiel without indexes are loaded immediately; tho...
python
def run_noise_experiment(num_neurons = 1, a = 128, dim = 6000, test_noise_levels = range(15, 100, 5), num_samples = 500, num_dendrites = 500, dendrite_length = 30, theta = 8, num_trials = 100): """ Tests the impa...
java
public static JsonNode getValue(JsonNode node, String dPath) { String[] paths = splitDpath(dPath); Object result = node; for (String path : paths) { result = extractValue(result, path); } if (result instanceof POJONode) { result = extractValue((POJONode) r...
python
def normalize_bbox(bbox, rows, cols): """Normalize coordinates of a bounding box. Divide x-coordinates by image width and y-coordinates by image height. """ if rows == 0: raise ValueError('Argument rows cannot be zero') if cols == 0: raise ValueError('Argument cols cannot be zero') ...
python
def modification_time(self): """dfdatetime.DateTimeValues: modification time or None if not available.""" timestamp = getattr( self._cpio_archive_file_entry, 'modification_time', None) if timestamp is None: return None return dfdatetime_posix_time.PosixTime(timestamp=timestamp)
java
@Override public boolean hasHttpsEndpoint(String serviceName) { if (!isServiceSupported(serviceName)) return false; return getEndpoint(serviceName).hasHttpsSupport(); }
java
public final void putDouble(Object parent, long offset, double value) { THE_UNSAFE.putDouble(parent, offset, value); }
java
public EEnum getIfcElectricCurrentEnum() { if (ifcElectricCurrentEnumEEnum == null) { ifcElectricCurrentEnumEEnum = (EEnum) EPackage.Registry.INSTANCE.getEPackage(Ifc2x3tc1Package.eNS_URI) .getEClassifiers().get(823); } return ifcElectricCurrentEnumEEnum; }
python
def convert_conelp(c, G, h, dims, A = None, b = None, **kwargs): """ Applies the clique conversion method of Fukuda et al. to the positive semidefinite blocks of a cone LP. :param c: :py:class:`matrix` :param G: :py:class:`spmatrix` :param h: :py:clas...
java
public ListParameterization addFlag(OptionID optionid) { parameters.add(new ParameterPair(optionid, Flag.SET)); return this; }
java
public String getDate(Date date) { return CmsDateUtil.getDate(date, DateFormat.SHORT, m_locale); }
python
def get(cls, uuid): """Return a `Resource` instance of this class identified by the given code or UUID. Only `Resource` classes with specified `member_path` attributes can be directly requested with this method. """ if not uuid: raise ValueError("get must ha...
python
def _set_choices(self, value): """ Also update the widget's choices. """ super(LazyChoicesMixin, self)._set_choices(value) self.widget.choices = value
python
def comment(self, comment): """ Add a :class:`Comment <pypump.models.comment.Comment>` to the object. :param comment: A :class:`Comment <pypump.models.comment.Comment>` instance, text content is also accepted. Example: >>> anote.comment(pump.Comment('I agree!'))...
python
def _get_titles(self, limit): """ The file processed here is of the format: #NBK_id GR_shortname OMIM NBK1103 trimethylaminuria 136132 NBK1103 trimethylaminuria 602079 NBK1104 cdls 122470 Where each of the rows represents a mapping between ...
java
protected Object[] createParams(NodeId id, Object p, boolean before) { // Create the key List<Object> key = new ArrayList<Object>(); if (getStorageModel() == SM_BINARY_KEYS) { key.add(id.getRawBytes()); } else { key.add(id.getMostSignificantBits()); k...
python
def update(self, table, data_list, matched_field=None, return_cols='id'): """ Create a bulk insert statement which is much faster (~2x in tests with 10k & 100k rows and 4 cols) for inserting data then executemany() TODO: Is there a limit of length the query can be? If so handle it. ...
java
protected JsonDeserializer<Object> _findRootDeserializer(DeserializationConfig cfg, JavaType valueType) throws JsonMappingException { // Sanity check: must have actual type... if (valueType == null) { throw new JsonMappingException("No value type configured for ObjectReader"); ...
python
def set_keep_alive(self, sock, after_idle_sec=5, interval_sec=60, max_fails=5): """ This function instructs the TCP socket to send a heart beat every n seconds to detect dead connections. It's the TCP equivalent of the IRC ping-pong protocol and allows for better c...
python
def stringify_values(data): """Coerce iterable values to 'val1,val2,valN' Example: fields=['nickname', 'city', 'can_see_all_posts'] --> fields='nickname,city,can_see_all_posts' :param data: dict :return: converted values dict """ if not isinstance(data, dict): raise Val...
java
public static Resource getFile(Config config, Resource directory, String path, short type) { path = replacePlaceholder(path, config); if (!StringUtil.isEmpty(path, true)) { Resource file = getFile(directory.getRealResource(path), type); if (file != null) return file; file = getFile(config.getResource(...
java
public Observable<OperationStatusResponseInner> beginReimageAllAsync(String resourceGroupName, String vmScaleSetName) { return beginReimageAllWithServiceResponseAsync(resourceGroupName, vmScaleSetName).map(new Func1<ServiceResponse<OperationStatusResponseInner>, OperationStatusResponseInner>() { @Ov...
python
def get_recent_matches(self, card_type="micro_card"): """ Calling the Recent Matches API. Arg: card_type: optional, default to micro_card. Accepted values are micro_card & summary_card. Return: json data """ recent_matches_url = self.api...
python
def delete(self, href=None): """Delete an item. When ``href`` is ``None``, delete the collection. """ if self.is_fake: return if href is None: self.collection.delete() return item = self.get(href) if item is None: ...
python
def _find_limit_hosted_zone(self): """ Calculate the max recordsets and vpc associations and the current values per hosted zone """ for limit_type in [self.MAX_RRSETS_BY_ZONE, self.MAX_VPCS_ASSOCIATED_BY_ZONE]: self.limits[limit_type["name"]...
java
public static void main(String[] args) { try { TreeFactory tf = new LabeledScoredTreeFactory(); Reader r = new BufferedReader(new InputStreamReader(new FileInputStream(args[0]), "UTF-8")); TreeReader tr = new PennTreeReader(r, tf); Tree t = tr.readTree(); while (t != null) { ...
python
def _set_property_dict_item(obj, prop, key, value): ''' Sets the dict item key of the attr from obj. Basicaly it does getattr(obj, prop)[key] = value. For the disk device we added some checks to make device changes on the CLI saver. ''' attr = getattr(obj, prop) if prop == 'de...
python
def MakeDeployableBinary(self, template_path, output_path): """This will add the config to the client template and create a .rpm.""" rpmbuild_binary = "/usr/bin/rpmbuild" if not os.path.exists(rpmbuild_binary): logging.error("rpmbuild not found, unable to repack client.") return with utils...
python
def get_empty_results(self): """ Because the base result type is different depending on the return structure (e.g. list for flat, dict for object), `get_result_type` initials the `results` variable to the proper type """ assert self.result_type is not None, ( ...
python
def set_background_corpus(self, background): ''' Parameters ---------- background ''' if issubclass(type(background), TermDocMatrixWithoutCategories): self._background_corpus = pd.DataFrame(background .get_te...
java
@Nonnull public static <T1, T2> LToLongBiFunction<T1, T2> toLongBiFunctionFrom(Consumer<LToLongBiFunctionBuilder<T1, T2>> buildingFunction) { LToLongBiFunctionBuilder builder = new LToLongBiFunctionBuilder(); buildingFunction.accept(builder); return builder.build(); }
java
public static boolean delete(String tableName, String primaryKey, Record record) { return MAIN.delete(tableName, primaryKey, record); }
python
def rsolve(A, b, epsilon=_epsilon): r"""Robust solve for the linear equations. Args: A (array_like): Coefficient matrix. b (array_like): Ordinate values. Returns: :class:`numpy.ndarray`: Solution ``x``. """ A = asarray(A, float) b = asarray(b, float) if A.shape[0] =...
java
@Inject public void setFreemarkerManager(FreemarkerManager mgr) { this.freemarkerManager = mgr; if (null != freemarkerManager) { Configuration old = freemarkerManager.getConfig(); if (null != old) { config = (Configuration) freemarkerManager.getConfig().clone(); config.setTemplateL...
java
private void writeAttributeTypes(String name, FieldType[] types) throws IOException { m_writer.writeStartObject(name); for (FieldType field : types) { m_writer.writeNameValuePair(field.name().toLowerCase(), field.getDataType().getValue()); } m_writer.writeEndObject(); }
python
def main(): """Run along little fella.""" parser = ArgumentParser() subs = parser.add_subparsers(dest='cmd') setup_parser = subs.add_parser('setup') setup_parser.add_argument('-r', '--region', default=PRIMARY_REGION, help='AWS region to install all services') setup_...
java
@Override public Object eGet(int featureID, boolean resolve, boolean coreType) { switch (featureID) { case AfplibPackage.RESOURCE_SECTION_NUMBER__RES_SNUM: return getResSNum(); } return super.eGet(featureID, resolve, coreType); }
python
def msg_curse(self, args=None, max_width=None): """Return the dict to display in the curse interface.""" # Init the return message ret = [] # Only process if stats exist and display plugin enable... if not self.stats or self.is_disable(): return ret # Max si...
java
public void run() { if (TraceComponent.isAnyTracingEnabled() && tc.isEntryEnabled()) SibTr.entry(tc, "run"); UniqueKeyGenerator generator = null; while (_running) { synchronized (_asyncQ) { // Do we have anything to do? while...
python
def raw_input(prompt=""): """raw_input([prompt]) -> string Read a string from standard input. The trailing newline is stripped. If the user hits EOF (Unix: Ctl-D, Windows: Ctl-Z+Return), raise EOFError. On Unix, GNU readline is used if enabled. The prompt string, if given, is printed without a trailing newline befo...
python
def _is_valid_dkim(self, value): """Check if value is a valid DKIM""" validator_dict = {'h': lambda val: val in ['sha1', 'sha256'], 's': lambda val: val in ['*', 'email'], 't': lambda val: val in ['y', 's'], 'v': lambda val: v...
python
def _get_model_fields(self, model, prefix=_field_prefix): """ Find all fields of given model that are not default models. """ fields = list() for field_name, field in model()._ordered_fields: # Filter the default fields if field_name not in getattr(model, ...
java
@Override public void evaluate(DoubleSolution solution) { int numberOfVariables = getNumberOfVariables() ; double[] f = new double[getNumberOfObjectives()]; double[] x = new double[numberOfVariables] ; for (int i = 0; i < numberOfVariables; i++) { x[i] = solution.getVariableValue(i) ; } ...
java
public static void closeFileStream(InputStream inputStream, String filePath){ try { if (inputStream != null) { inputStream.close(); } } catch (IOException e) { LOG.error("close file {} occur an IOExcpetion {}", filePath, e); } }
java
public static void convertImplicitToExplicitHydrogens(IAtomContainer atomContainer) { List<IAtom> hydrogens = new ArrayList<IAtom>(); List<IBond> newBonds = new ArrayList<IBond>(); // store a single explicit hydrogen of each original neighbor Map<IAtom, IAtom> hNeighbor = Maps.newHashMa...
python
def execute_command(self, *args, **options): """ Execute a command and return a parsed response. """ pool = self.connection_pool command_name = args[0] connection = pool.get_connection(command_name, **options) try: connection.send_command(*args) ...
python
def do_some_expensive_things(number): """ Perform one expensive computation cooperatively with any other iterator passed into twisted's cooperate, then use it's result to pass into the second computation. :param number: :return: """ result = yield batch_accumulate(1000, expensive(numb...
java
@Deprecated protected boolean isRetriableException(Throwable e) { if (getRetryHandler() != null) { return getRetryHandler().isRetriableException(e, true); } return false; }