language
stringclasses
2 values
func_code_string
stringlengths
63
466k
python
def parse_degrees(cls, degrees, arcminutes, arcseconds, direction=None): """ Parse degrees minutes seconds including direction (N, S, E, W) """ degrees = float(degrees) negative = degrees < 0 arcminutes = float(arcminutes) arcseconds = float(arcseconds) i...
java
public XExtension getByPrefix(String prefix) { for (XExtension ext : extensionList) { if (ext.getPrefix().equals(prefix)) { return ext; } } return null; }
python
def __initialize_tree(self, theme): """ Initializes the object formats tree. :param theme: Theme. :type theme: dict """ for item in sorted(theme): current_node = self.__root_node for format in item.split("."): nodes = [node for no...
python
def upload(ctx): """Upload files to Azure Storage""" settings.add_cli_options(ctx.cli_options, settings.TransferAction.Upload) ctx.initialize(settings.TransferAction.Upload) specs = settings.create_upload_specifications( ctx.cli_options, ctx.config) del ctx.cli_options for spec in specs:...
java
public Database asynchronous(final Scheduler nonTransactionalScheduler) { return asynchronous(new Func0<Scheduler>() { @Override public Scheduler call() { return nonTransactionalScheduler; } }); }
python
def bucket(cls, bucket_name, connection=None): """Gives the bucket from couchbase server. :param bucket_name: Bucket name to fetch. :type bucket_name: str :returns: couchbase driver's Bucket object. :rtype: :class:`couchbase.client.Bucket` :raises: :exc:`RuntimeError` If...
python
def get_user_dn(self, username): """ Get the user distinguished name (dn) """ server = ldap3.Server('ldap://' + self.ldap_server) connection = ldap3.Connection(server) connection.open() connection.search( search_base=self.dn, search_filter...
java
@SuppressWarnings("WeakerAccess") public static double compareChi2(TDigest dist1, TDigest dist2, double[] qCuts) { double[][] count = new double[2][]; count[0] = new double[qCuts.length + 1]; count[1] = new double[qCuts.length + 1]; double oldQ = 0; double oldQ2 = 0; ...
java
public static com.liferay.commerce.product.model.CPFriendlyURLEntry createCPFriendlyURLEntry( long CPFriendlyURLEntryId) { return getService().createCPFriendlyURLEntry(CPFriendlyURLEntryId); }
java
public void addPhaseListener(PhaseListener phaseListener) { if (phaseListener == null) { throw new NullPointerException("phaseListener"); } getStateHelper().add(PropertyKeys.phaseListeners, phaseListener); }
java
public EClass getIfcRelConnectsStructuralElement() { if (ifcRelConnectsStructuralElementEClass == null) { ifcRelConnectsStructuralElementEClass = (EClass) EPackage.Registry.INSTANCE .getEPackage(Ifc2x3tc1Package.eNS_URI).getEClassifiers().get(462); } return ifcRelConnectsStructuralElementEClass; }
java
@Pure @Inline(value = "$2.valueOf($1.doubleValue())", imported = BigDecimal.class) public static BigDecimal toBigDecimal(AtomicDouble number) { return BigDecimal.valueOf(number.doubleValue()); }
python
def parse(cls, query_str): """ Parse string that represent query component from URI :param query_str: string without '?'-sign :return: WURIQuery """ parsed_query = parse_qs(query_str, keep_blank_values=True, strict_parsing=True) result = cls() for parameter_name in parsed_query.keys(): for parameter_v...
python
def _sample_condition(exp_condition, frame_times, oversampling=50, min_onset=-24): """Make a possibly oversampled event regressor from condition information. Parameters ---------- exp_condition : arraylike of shape (3, n_events) yields description of events for this conditi...
python
def ngram2mgram(input_file, output_file, n, m, words=False, ascii_idngram=False): """ Takes either a word n-gram file, or an id n-gram file and outputs a file of the same type where m < n. """ cmd = ['ngram2mgram', '-n', n, '-m', m] if words and ascii_idngram: ...
python
def _scroll_contents(self, adj): """Called when the scroll bars are adjusted by the user. """ if self._adjusting: return True try: pos_x = self.hsb.get_value() pos_y = self.vsb.get_value() pct_x = pos_x / self.rng_x # invert Y...
java
private Shape decodeMarkInterior(int width, int height) { int left = (width - 3) / 2 - 5; int top = (height - 2) / 2 - 5; path.reset(); path.moveTo(left + 1, top + 1); path.lineTo(left + 4, top + 1); path.lineTo(left + 5, top + 3); path.lineTo(left + 7, top + 1)...
python
def apply(self, mentions): """ Apply the Matcher to a **generator** of mentions. Optionally only takes the longest match (NOTE: assumes this is the *first* match) """ seen_spans = set() for m in mentions: if self.f(m) and ( not self.lon...
python
def write_main(self): ''' Writes out a huge string representing the main section of the python compiled toil script. Currently looks at and writes 5 sections: 1. JSON Variables (includes importing and preparing files as tuples) 2. TSV Variables (includes importing and pr...
java
public String summarize() { return String.format(SUMMARY_FORMAT, action, responseContent, accessToken, accessTokenExpiresAt, accessTokenDuration, refreshToken, refreshTokenExpiresAt, refreshTokenDuration, clientId, clientIdAlias, clientIdAliasUsed, subjec...
java
public static void writeObject(CodedOutputStream out, int order, FieldType type, Object o, boolean list) throws IOException { if (o == null) { return; } if (type == FieldType.OBJECT) { Class cls = o.getClass(); Codec target = ProtobufProxy.create...
java
public static int cudaMemcpyPeerAsync(Pointer dst, int dstDevice, Pointer src, int srcDevice, long count, cudaStream_t stream) { return checkResult(cudaMemcpyPeerAsyncNative(dst, dstDevice, src, srcDevice, count, stream)); }
python
def _get_db_password(dbSystem,db,user): """Read through the users .dbrc file to get password for the db/user combination suplied. If no password is found then prompt for one """ import string, getpass, os dbrc = os.environ['HOME']+"/.dbrc" password={} if os.access(dbrc,os.R_OK): fd=...
python
def set_frameworkcontroller_config(experiment_config, port, config_file_name): '''set kubeflow configuration''' frameworkcontroller_config_data = dict() frameworkcontroller_config_data['frameworkcontroller_config'] = experiment_config['frameworkcontrollerConfig'] response = rest_put(cluster_metadata_ur...
python
def query_metric_tags(self, metric_type, metric_id): """ Returns a list of tags in the metric definition. :param metric_type: MetricType to be matched (required) :param metric_id: Exact string matching metric id """ definition = self._get(self._get_metrics_tags_url(self....
python
def subsets_changed(last_observed_subsets, subsets): """ >>> Kubernetes.subsets_changed([], []) False >>> Kubernetes.subsets_changed([], [k8s_client.V1EndpointSubset()]) True >>> s1 = [k8s_client.V1EndpointSubset(addresses=[k8s_client.V1EndpointAddress(ip='1.2.3.4')])] ...
python
def clean_prefix(self): """The cleaned up invoke prefix. i.e. mentions are ``@name`` instead of ``<@id>``.""" user = self.context.guild.me if self.context.guild else self.context.bot.user # this breaks if the prefix mention is not the bot itself but I # consider this to be an *incredibly...
java
public static void put(HttpConsumer<HttpExchange> endpoint, MediaTypes... mediaTypes) { addResource(Methods.PUT, HandlerUtil.BASE_PATH, endpoint, mediaTypes); }
java
@When("^I execute an elasticsearch query over index '(.*?)' and mapping '(.*?)' and column '(.*?)' with value '(.*?)' to '(.*?)'$") public void elasticSearchQueryWithFilter(String indexName, String mappingName, String columnName, String filterType, String value) { try { commonspec.se...
java
protected void validate(String operationType) throws Exception { super.validate(operationType); MPSDouble br_cpu_usage_validator = new MPSDouble(); br_cpu_usage_validator.validate(operationType, br_cpu_usage, "\"br_cpu_usage\""); MPSDouble br_memory_usage_validator = new MPSDouble(); br_memory_us...
python
def load_multiple(paths=None, first_data_line="auto", filters="*.*", text="Select some files, FACEHEAD.", default_directory="default_directory", quiet=True, header_only=False, transpose=False, **kwargs): """ Loads a list of data files into a list of databox data objects. Returns said list. Paramete...
java
public void realize(ApplicationContext wac, ConfigurableApplicationContext child) { if (WebApplicationContextUtils.getWebApplicationContext(_context) == null) { _context.setAttribute(WebApplicationContext.ROOT_WEB_APPLICATION_CONTEXT_ATTRIBUTE, wac); } else { _logger.warning("Alr...
python
def _register_order_book_channels(self): """ Registers the binding for the order_book channels. :return: """ channels = {'order_book': self.btcusd_ob_callback, 'order_book_btceur': self.btceur_ob_callback, 'order_book_eurusd': self.eurusd_o...
python
def cell_nodes_x(self): """The unstructured x-boundaries with shape (N, m) where m > 2""" decoder = self.decoder xcoord = self.xcoord data = self.data xbounds = decoder.get_cell_node_coord( data, coords=data.coords, axis='x') if self.plotter.convert_radian: ...
python
def service_status(self, short_name): """Get the current status of a service. Returns information about the service such as the length since the last heartbeat, any status messages that have been posted about the service and whether the heartbeat should be considered out of the ordinary...
python
def nCr(n, r): """ Calculates nCr. Args: n (int): total number of items. r (int): items to choose Returns: nCr. """ f = math.factorial return int(f(n) / f(r) / f(n-r))
python
def to_string(self, ast_obj=None, fmt: str = "medium") -> str: """Convert AST object to string Args: fmt (str): short, medium, long formatted BEL statements short = short function and short relation format medium = short function and long relation format ...
java
@Override public Object transform( Object input ) { rootSpec.apply( ROOT_KEY, Optional.of( input ), new WalkedPath(), null, null ); return input; }
java
private void updateEntry(HashtableEntry entry) throws IOException, EOFException, FileManagerException, ClassNotFoundException { // // We'll write the header, key, and data into a byte arry first, // then allocate, seek, and write with a single write operation. // It i...
java
private Tree<Row> here( Element token ){ current.getContent().addToken( token ); return current; }
java
public final static void itosReverse(long i, int index, char[] buf) { assert (i >= 0); long q; int r; // Get 2 digits/iteration using longs until quotient fits into an int while (i > Integer.MAX_VALUE) { q = i / 100; // really: r = i - (q * 100); r = (int) (i - ((q << 6) + (q << 5) + (q << 2))); ...
java
@Override public ExecutionEntity createExecution(boolean initializeExecutionStartContext) { // create the new child execution ExecutionEntity createdExecution = createNewExecution(); // initialize sequence counter createdExecution.setSequenceCounter(getSequenceCounter()); // manage the bidirecti...
python
def update_aliases( cr, registry, model_name, set_parent_thread_id, alias_defaults=None, defaults_id_key=False): """ Update a model's aliases according to how they are configured in the model's create() method. :param model_name: The name of the model whose aliases are to be updated. \ ...
java
@Override public boolean readBoolean() throws JMSException { backupState(); try { return getInput().readBoolean(); } catch (EOFException e) { restoreState(); throw new MessageEOFException("End of body reached"); } catch (...
java
private boolean isCategorySystemService(Field field) { if(!(field.getName().endsWith("_service") || field.getName().endsWith("_SERVICE"))) { return false; } Field[] declaredFields = Context.class.getDeclaredFields(); for (Field declaredField : declaredFields) { if(String.class.isAssig...
python
def Parse(self, cmd, args, stdout, stderr, return_val, time_taken, knowledge_base): """Parse the ps output. Note that cmdline consumes every field up to the end of line and as it is string, we can't perfectly see what the arguments on the command line really were. We just assume a space is ...
java
@Override public Collection<ResourceBundle> bundles(Locale locale) { Set<ResourceBundle> bundles = new LinkedHashSet<>(); for (I18nExtension extension : extensions) { if (extension.locale().equals(locale)) { bundles.add(extension.bundle()); } } ...
java
@Override public Collection<RTMPConnection> removeConnections() { ArrayList<RTMPConnection> list = new ArrayList<RTMPConnection>(connMap.size()); list.addAll(connMap.values()); connMap.clear(); conns.set(0); return list; }
python
def on_touch_up(self, touch): """Delegate touch handling if possible, else select something.""" if hasattr(self, '_lasttouch') and self._lasttouch == touch: return self._lasttouch = touch touch.push() touch.apply_transform_2d(self.to_local) if hasattr(self, 'p...
python
def wait_for(self, text, seconds): """ Returns True when the specified text has appeared in a line of the output, or False when the specified number of seconds have passed without that occurring. """ found = False stream = self.stream start_time = time.tim...
python
def _parse_errorbars(self, label, err): """ Look for error keyword arguments and return the actual errorbar data or return the error DataFrame/dict Error bars can be specified in several ways: Series: the user provides a pandas.Series object of the same l...
python
def get_symbol_ticker(self, **params): """Latest price for a symbol or symbols. https://github.com/binance-exchange/binance-official-api-docs/blob/master/rest-api.md#24hr-ticker-price-change-statistics :param symbol: :type symbol: str :returns: API response .. code-bl...
python
def mergeidngram(output_file, input_files, n=3, ascii_input=False, ascii_output=False): """ Takes a set of id n-gram files (in either binary (by default) or ASCII (if specified) format - note that they should all be in the same format, however) and outputs a merged id N-gram. Notes : This function ...
python
def get_replacement_types(titles, reportnumbers, publishers): """Given the indices of the titles and reportnumbers that have been recognised within a reference line, create a dictionary keyed by the replacement position in the line, where the value for each key is a string describing the type o...
python
def render_link(self): """Render the page as a link.""" extra_context = { 'add_nofollow': settings.ADD_NOFOLLOW, 'page': self, 'querystring_key': self.querystring_key, } if self.is_current: template_name = 'el_pagination/current_link.html' ...
python
def create_client(access_token): """Create the dci client in the master realm.""" url = 'http://keycloak:8080/auth/admin/realms/dci-test/clients' r = requests.post(url, data=json.dumps(client_data), headers=get_auth_headers(access_token)) if r.status_code in (...
python
def ensure_v8_src(): """ Ensure that v8 src are presents and up-to-date """ path = local_path('v8') if not os.path.isdir(path): fetch_v8(path) else: update_v8(path) checkout_v8_version(local_path("v8/v8"), V8_VERSION) dependencies_sync(path)
python
def autoconf(self): """Implements Munin Plugin Auto-Configuration Option. @return: True if plugin can be auto-configured, False otherwise. """ nginxInfo = NginxInfo(self._host, self._port, self._user, self._password, ...
python
def _get_intf_rb_id(rbridge_id): """ Creates a new Netconf request based on the rbridge_id specifed """ intf_rb_id = ET.Element( 'get-ip-interface', xmlns="urn:brocade.com:mgmt:brocade-interface-ext" ) if rbridge_id is not None: rbridge_el = E...
python
def get_connection(self, command_name, *keys, **options): """ Get a connection, blocking for ``self.timeout`` until a connection is available from the pool. If the connection returned is ``None`` then creates a new connection. Because we use a last-in first-out queue, the existi...
python
def prop(self, name): """Search and get the value of an attribute associated to a node This does the entity substitution. This function looks in DTD attribute declaration for #FIXED or default declaration values unless DTD use has been turned off. NOTE: this function acts...
python
def elapse_time(start, end=None, precision=3): """ Simple time calculation utility. Given a start time, it will provide an elapse time. """ if end is None: end = time_module.time() return round(end-start, precision)
java
public final EObject ruleGeneratedMetamodel() throws RecognitionException { EObject current = null; Token otherlv_0=null; Token otherlv_2=null; Token otherlv_3=null; AntlrDatatypeRuleToken lv_name_1_0 = null; AntlrDatatypeRuleToken lv_alias_4_0 = null; enter...
python
def _parse_w_comma_h(self, whstr, param): """Utility to parse "w,h" "w," or ",h" values. Returns (w,h) where w,h are either None or ineteger. Will throw a ValueError if there is a problem with one or both. """ try: (wstr, hstr) = whstr.split(',', 2) w = s...
java
@Override protected OpenedObject<T> generateOpenObject(T object) throws IOException { return new OpenedObject<>( object, new RetryingInputStream<>(object, openObjectFunction, retryCondition, getMaxFetchRetry()), getNoopCloser() ); }
python
def setup_hydrocarbon_ff(graph): """Create a simple ForceField object for hydrocarbons based on the graph.""" # A) Define parameters. # the bond parameters: bond_params = { (6, 1): 310*kcalmol/angstrom**2, (6, 6): 220*kcalmol/angstrom**2, } # for every (a, b), also add (b, a) ...
java
protected void markTime(final StringBuilder b, long t1, long t2) { boolean time = getPhaseConfiguration().isTime(); if (time) { String seconds = timeFormat((t2 - t1)); b.append("("); b.append(seconds); b.append(" seconds) "); } }
python
def get_histories_fix_params(self, exp, rep, tag, **kwargs): """ this function uses get_history(..) but returns all histories where the subexperiments match the additional kwargs arguments. if alpha=1.0, beta = 0.01 is given, then only those experiment histories are returned, ...
python
def doc_sub(*sub): """ Decorator for performing substitutions in docstrings. Using @doc_sub(some_note, other_note) on a function with {0} and {1} in the docstring will substitute the contents of some_note and other_note for {0} and {1}, respectively. Decorator appears to work properly both wit...
python
def stack_push(self, value: Union[int, bytes]) -> None: """ Push ``value`` onto the stack. Raise `eth.exceptions.StackDepthLimit` if the stack is full. """ return self._stack.push(value)
java
@Deprecated private T build(Constructor<T> constructor, Object[] args) { try { return constructor.newInstance(args); } catch (IllegalArgumentException | IllegalAccessException | InstantiationException ex) { throw new IllegalArgumentException( "Bean cannot...
python
def determine_positions(nodes, edges): """ Construct the problem instance to solve the positions of contigs. The input for spring_system() is A, K, L, which looks like the following. A = np.array([[1, -1, 0], [0, 1, -1], [1, 0, -1]]) K = np.eye(3, dtype=int) L = np.array([1, 2, 3]) For exa...
python
def seek(self, offset, whence=0): """Move to a new offset either relative or absolute. whence=0 is absolute, whence=1 is relative, whence=2 is relative to the end. Any relative or absolute seek operation which would result in a negative position is undefined and that case can be ignored...
java
private <X extends YamlContainerNode> X putContainer( YamlNode key, X value) { put(key, value); return value; }
java
public static TaskEntity createAndInsert(VariableScope execution) { TaskEntity task = create(); if (execution instanceof ExecutionEntity) { ExecutionEntity executionEntity = (ExecutionEntity) execution; task.setExecution(executionEntity); task.skipCustomListeners = executionEntity.isSkipCusto...
java
public void setValue(double value) { if(!expectingValue) { throw new RuntimeException("Call to setValue() perfomed without prior getNextPoint() call (e.g. call performed twice)."); } if (numberOfIterations < 3) { /** * Initially fill values */ values[numberOfIterations] = value; if (numberOf...
java
@Override public double[] sample(long sampleSize) { if (sampleSize <= 0) { throw new NotStrictlyPositiveException(LocalizedFormats.NUMBER_OF_SAMPLES, sampleSize); } // FIXME: int cast double[] out = new double[(int) sampleSize]; for (int i = 0; i < sampleSize; i++...
java
private void addPostParams(final Request request) { if (target != null) { request.addPostParam("Target", target.toString()); } if (configurationUrl != null) { request.addPostParam("Configuration.Url", configurationUrl); } if (configurationMethod != null)...
python
def pubkey(self): """If the :py:obj:`PGPKey` object is a private key, this method returns a corresponding public key object with all the trimmings. Otherwise, returns ``None`` """ if not self.is_public: if self._sibling is None or isinstance(self._sibling, weakref.ref): ...
python
def _set_line_indent(src, line, indent): ''' Indent the line with the source line. ''' if not indent: return line idt = [] for c in src: if c not in ['\t', ' ']: break idt.append(c) return ''.join(idt) + line.lstrip()
python
def set_hostname(hostname=None): ''' Sets the hostname on the server. .. versionadded:: 2019.2.0 Args: hostname(str): The new hostname to set. CLI Example: .. code-block:: bash salt '*' cimc.set_hostname foobar ''' if not hostname: raise salt.exceptions.Comm...
python
def reconnect(self): """Reconnect the client after a disconnect. Can only be called after connect()/connect_async().""" if len(self._host) == 0: raise ValueError('Invalid host.') if self._port <= 0: raise ValueError('Invalid port number.') self._in_packet...
java
private static Collection<? extends WMSLayer> parseLayers(Node element) { final TileSystem tileSystem = org.osmdroid.views.MapView.getTileSystem(); List<WMSLayer> rets = new ArrayList<>(); WMSLayer ret = new WMSLayer(); Double north = null; Double south = null; Double ea...
python
def stop(self): """ Stop the primitive manager. """ for p in self.primitives[:]: p.stop() StoppableLoopThread.stop(self)
java
public void setCustomKeyStores(java.util.Collection<CustomKeyStoresListEntry> customKeyStores) { if (customKeyStores == null) { this.customKeyStores = null; return; } this.customKeyStores = new com.amazonaws.internal.SdkInternalList<CustomKeyStoresListEntry>(customKeySto...
python
def filter_repeated(self): ''' Determine whether a check is repeating. ''' defaults = { 'occurrences': 1, 'interval': 30, 'refresh': 1800 } # Override defaults with anything defined in the settings if isinstance(self.settings['...
python
def vectorize(fn): """ Allows a method to accept a list argument, but internally deal only with a single item of that list. """ @functools.wraps(fn) def vectorized_function(values, *vargs, **kwargs): return [fn(value, *vargs, **kwargs) for value in values] return vectorized_functio...
java
public static boolean deregister( @Nonnull final Factory factory ) { if ( g_factory != factory ) { return false; } else { g_factory = null; return true; } }
python
def createNetwork(networkConfig): """ Create and initialize the specified network instance. @param networkConfig: (dict) the configuration of this network. @return network: (Network) The actual network """ registerAllResearchRegions() network = Network() if networkConfig["networkType"] == "L4L2Colum...
java
private KubernetesCommand<?> getCommand(Message message, KubernetesEndpointConfiguration endpointConfiguration) { Object payload = message.getPayload(); KubernetesCommand<?> command; if (message instanceof KubernetesMessage) { command = createCommandFromRequest(message.getPayload(Ku...
python
def open_fake_page(self, page_text, url=None, soup_config=None): """Mock version of :func:`open`. Behave as if opening a page whose text is ``page_text``, but do not perform any network access. If ``url`` is set, pretend it is the page's URL. Useful mainly for testing. """ ...
python
def syslog(server, enable=True, host=None, admin_username=None, admin_password=None, module=None): ''' Configure syslog remote logging, by default syslog will automatically be enabled if a server is specified. However, if you want to disable syslog you will need to specify a server followed b...
python
def get_enabled_modules(): """ <Purpose> Returns all enabled modules. <Arguments> None <Side Effects> None <Exceptions> None <Return> The list of all enabled modules. """ enabled = [] directory_contents = os.listdir(MODULES_FOLDER_PATH) for fname in get_installed_modules(): i...
java
@Override public synchronized RecordScan read(int scanId) throws DatabaseException { try { psRead.setInt(1, scanId); try (ResultSet rs = psRead.executeQuery()) { RecordScan result = build(rs); return result; } } catch (SQLException e) { throw new DatabaseException(e); } }
python
def verifyInputs(self): """ Used in propagate() to verify that the network input activations have been set. """ for layer in self.layers: if (layer.verify and layer.type == 'Input' and layer.kind != 'Context' and layer.a...
java
public synchronized void forceTxRollover() { if (async) { try { forceTxRolloverFlag = false; indexCommandQueue.put(FORCE_TX_ROLLOVER); while (!forceTxRolloverFlag) { Thread.sleep(5); } } catch (Interrupte...
java
public boolean isMatchingTopic(String topic) { if (isFixedTopics()) { return getFixedTopics().contains(topic); } else { return topicPattern.matcher(topic).matches(); } }
java
private AWSCredentials credentials(JsonNode credentialsJson) { String accessKeyId = getText(credentialsJson, "AccessKeyId"); String secretAccessKey = getText(credentialsJson, "SecretAccessKey"); String sessionToken = getText(credentialsJson, "SessionToken"); ValidationUtils.assertString...
python
def clear(self): """Reset this PeerGroup. This closes all connections to all known peers and forgets about these peers. :returns: A Future that resolves with a value of None when the operation has finished """ try: for peer in self._p...
python
def copyfrom_file_object(self, query, file_object, compress=True, compression_level=DEFAULT_COMPRESSION_LEVEL): """ Gets data from a readable file object into a table :param query: The "COPY table_name [(column_name[, ...])] FROM STDIN [WI...