language stringclasses 2
values | func_code_string stringlengths 63 466k |
|---|---|
python | def do_copy_file(self, args):
"""
Determine if file should be copied or not and handle exceptions.
"""
path, prefixed_path, source_storage = args
reset_connection(self.storage)
if self.collectfast_enabled and not self.dry_run:
try:
if not sho... |
python | def set_sampling_interval(self, interval):
"""
This method sets the sampling interval for the Firmata loop method
:param interval: time in milliseconds
:returns: No return value
"""
task = asyncio.ensure_future(self.core.set_sampling_interval(interval))
self.loo... |
java | public Pair<T> max() {
int maxCount = 0;
TLongIntIterator iter = counts.iterator();
long maxIndex = 0;
while (!iter.hasNext()) {
iter.advance();
int count = iter.value();
if (count > maxCount) {
maxIndex = iter.key();
... |
java | public ScriptWrapper loadScript(ScriptWrapper script) throws IOException {
try {
return loadScript(script, DEFAULT_CHARSET);
} catch (MalformedInputException e) {
if (Charset.defaultCharset() == DEFAULT_CHARSET) {
// No point trying the (JVM) default charset if it's the same...
throw e;
}
... |
python | def make_std_api(python_version=sys.version_info, variant=VARIANT):
"""
Generate an object which can be used in the same way as the python
standard dis module. The difference is that the generated 'module' can be
used to disassemble byte / word code from a different python version than
the version o... |
python | def _walk_librispeech_dir(directory):
"""Walk a Librispeech directory and yield examples."""
directory = os.path.join(directory, "LibriSpeech")
for path, _, files in tf.io.gfile.walk(directory):
if not files:
continue
transcript_file = [f for f in files if f.endswith(".txt")]
if not transcript_... |
java | private void recycleViewsFromEndExpose(RecyclerView.Recycler recycler, int dt) {
final int childCount = getChildCount();
if (dt < 0) {
if (DEBUG) {
Log.d(TAG, "Called recycle from end with a negative value. This might happen"
+ " during layout changes ... |
python | def _update_val(self, val, result_score_list):
"""Update values in the list of result scores and self._pbar during pipeline evaluation.
Parameters
----------
val: float or "Timeout"
CV scores
result_score_list: list
A list of CV scores
Returns
... |
python | def load_config(self):
"""
Load the configuration from git config.
"""
for key in self.settings:
value = self.config(key)
# Parse true/false
if value == '' or value is None:
continue # Not set by user, go on
if val... |
java | public boolean isFeatureEnabled(com.ibm.websphere.servlet.container.WebContainer.Feature feature) {
return this.features.contains(feature);
} |
python | def applyJSONFilters(actions, source, format=""):
"""Walk through JSON structure and apply filters
This:
* reads a JSON-formatted pandoc document from a source string
* transforms it by walking the tree and performing the actions
* returns a new JSON-formatted pandoc document as a string
The ... |
java | public V get(K key, int index) {
final Collection<V> collection = get(key);
return CollUtil.get(collection, index);
} |
java | public static synchronized LaContainer create(String path) {
if (LdiStringUtil.isEmpty(path)) {
throw new EmptyRuntimeException("path");
}
return doCreate(path);
} |
java | public final EObject ruleAnnotationField() throws RecognitionException {
EObject current = null;
Token otherlv_7=null;
Token otherlv_9=null;
Token otherlv_11=null;
Token otherlv_14=null;
Token otherlv_16=null;
Token otherlv_18=null;
Token otherlv_20=null;... |
java | public URLConnection asURLConnection() {
URLConnection uc = getURLConnection();
if (uc != null) return uc;
try {
return new InputStreamURLConnection(
getResourceURLOrSystemId(),
this,
getDefaultUrlConnectionHeader()... |
python | def get_decompression_transform_files(self, offset=0):
"""Returns a list of dicts representing ``<mets:transformFile>``
elements with ``TRANSFORMTYPE="decompression"`` given
``compression_algorithm`` which is a comma-separated string of
algorithms that must be used in the order provided ... |
java | public void setBeta(double beta)
{
if(beta <= 0 || beta >= 1 || Double.isNaN(beta))
throw new IllegalArgumentException("shrinkage term must be in (0, 1), not " + beta);
this.beta = beta;
} |
java | public Token createToken(String tokenType, Map<String, Object> tokenData) throws TokenCreationFailedException {
try {
TokenService tokenService = getTokenServiceForType(tokenType);
return tokenService.createToken(tokenData);
} catch (IllegalArgumentException e) {
thro... |
java | private static String decodeHTMLEntities(String string) {
if (string == null) {
return null;
}
try {
return URLDecoder.decode(string, Charset.defaultCharset().displayName());
} catch (UnsupportedEncodingException exception) {
return string;
}
} |
java | public JobWorkspaceRestore getLastRestore(String repositoryName, String workspaceName)
{
for (int i = restoreJobs.size() - 1; i >= 0; i--)
{
JobWorkspaceRestore job = restoreJobs.get(i);
if (repositoryName.equals(job.getRepositoryName()) && workspaceName.equals(job.getWorkspaceName()))... |
java | public Injector createInjector() {
for (final TypeLiteral<?> typeLiteral : _inheritedTypeLiterals) {
final Key<?> key = Key.get(typeLiteral);
final Binding<?> binding = _parentInjector.getExistingBinding(key);
if (binding != null) {
if (!_adHocModule.hasBindin... |
java | @Override
public void expire(K key, V val) {
if (val == null) {
return;
}
try {
TupleInfo tupleInfo = (TupleInfo) val;
FailSpoutMsg fail = new FailSpoutMsg(key, spout, tupleInfo, taskStats);
disruptorEventQueue.publish(fail);
} catch (... |
java | protected Variable createVariable(final String name, final Class<?> type,
final Object value, final Modifiers mods) throws UtilEvalError {
return new Variable(name, type, value, mods);
} |
java | public void addRequestHandler(String clazz) {
Object initClass;
try {
initClass = Class.forName(clazz).newInstance();
} catch (Throwable t) {
LOG.error(Messages.get().getBundle().key(Messages.LOG_INIT_REQUEST_HANDLER_FAILURE_1, clazz), t);
return;
}
... |
java | public WebServiceTemplateBuilder interceptors(
Collection<? extends ClientInterceptor> interceptors) {
Assert.notNull(interceptors, "Interceptors must not be null");
return new WebServiceTemplateBuilder(this.detectHttpMessageSender,
append(Collections.<ClientInterceptor>emptySet(), interceptors),
this.in... |
java | public final Promise set(String key, byte[] value, SetArgs args) {
byte[] binaryKey = key.getBytes(StandardCharsets.UTF_8);
if (client != null) {
if (args == null) {
return new Promise(client.set(binaryKey, value));
}
return new Promise(client.set(binaryKey, value, args));
}
if (clusteredCl... |
python | def switch_on(self):
"""Turn the switch on."""
success = self.set_status(CONST.STATUS_OPEN_INT)
if success:
self._json_state['status'] = CONST.STATUS_OPEN
return success |
python | def from_file(cls, paramname, filename):
"""Returns a new MultipartParam object constructed from the local
file at ``filename``.
``filesize`` is determined by os.path.getsize(``filename``)
``filetype`` is determined by mimetypes.guess_type(``filename``)[0]
``filename`` is set ... |
python | def running_covar(xx=True, xy=False, yy=False, remove_mean=False, symmetrize=False, sparse_mode='auto',
modify_data=False, column_selection=None, diag_only=False, nsave=5):
""" Returns a running covariance estimator
Returns an estimator object that can be fed chunks of X and Y data, and
t... |
java | public ServiceFuture<InputInner> getAsync(String resourceGroupName, String jobName, String inputName, final ServiceCallback<InputInner> serviceCallback) {
return ServiceFuture.fromHeaderResponse(getWithServiceResponseAsync(resourceGroupName, jobName, inputName), serviceCallback);
} |
java | public void deliver(VoltMessage msg)
{
if (!m_isLeader && msg instanceof Iv2InitiateTaskMessage) {
final Iv2InitiateTaskMessage m = (Iv2InitiateTaskMessage) msg;
// We can't repair read only SP transactions. Just don't log them to the repair log.
if (m.isReadOnly()) {
... |
python | def _make_netmask(cls, arg):
"""Make a (netmask, prefix_len) tuple from the given argument.
Argument can be:
- an integer (the prefix length)
- a string representing the prefix length (e.g. "24")
- a string representing the prefix netmask (e.g. "255.255.255.0")
"""
... |
python | def capture(self):
"""
Capture the payment of an existing, uncaptured, charge.
This is the second half of the two-step payment flow, where first you
created a charge with the capture option set to False.
See https://stripe.com/docs/api#capture_charge
"""
captured_charge = self.api_retrieve().capture()
... |
python | def REV(self, params):
"""
REV Ra, Rb
Reverse the byte order in register Rb and store the result in Ra
"""
Ra, Rb = self.get_two_parameters(self.TWO_PARAMETER_COMMA_SEPARATED, params)
self.check_arguments(low_registers=(Ra, Rb))
def REV_func():
self... |
java | @Override
public EClass getIfcStairFlight() {
if (ifcStairFlightEClass == null) {
ifcStairFlightEClass = (EClass) EPackage.Registry.INSTANCE.getEPackage(Ifc4Package.eNS_URI)
.getEClassifiers().get(625);
}
return ifcStairFlightEClass;
} |
java | public void setDate( String parameterName, Date value ) throws OdaException
{
// only applies to named input parameter
parameters.put(parameterName, value);
} |
python | def size_r_img_inches(width, height):
"""Compute the width and height for an R image for display in IPython
Neight width nor height can be null but should be integer pixel values > 0.
Returns a tuple of (width, height) that should be used by ggsave in R to
produce an appropriately sized jpeg/png/pdf i... |
python | def from_triple(cls, triple):
"""
Create a Target instance for the given triple (a string).
"""
with ffi.OutputString() as outerr:
target = ffi.lib.LLVMPY_GetTargetFromTriple(triple.encode('utf8'),
outerr)
if... |
python | def backup(file_name, jail=None, chroot=None, root=None):
'''
Export installed packages into yaml+mtree file
CLI Example:
.. code-block:: bash
salt '*' pkg.backup /tmp/pkg
jail
Backup packages from the specified jail. Note that this will run the
command within the jail, a... |
python | async def server_stop(app, loop):
"""Sends a message to the webhook channel when server stops."""
em = Embed(color=0xe67e22)
em.set_footer('Host: {}'.format(socket.gethostname()))
em.description = '[INFO] Server Stopped'
await app.webhook.send(embed=em)
await app.session.close() |
java | public SerializedState deconstruct(CoroutineRunner runner) {
if (runner == null) {
throw new NullPointerException();
}
Coroutine coroutine = runner.getCoroutine();
Continuation cn = runner.getContinuation();
int size = cn.getSize();
VersionedFrame[] frames =... |
java | public ServiceCall<CounterexampleCollection> listCounterexamples(
ListCounterexamplesOptions listCounterexamplesOptions) {
Validator.notNull(listCounterexamplesOptions, "listCounterexamplesOptions cannot be null");
String[] pathSegments = { "v1/workspaces", "counterexamples" };
String[] pathParameters... |
java | private String getAndValidateScriptName(JSONObject params) throws ApiException {
String scriptName = params.getString(ACTION_PARAM_SCRIPT_NAME);
if (extension.getScript(scriptName) == null) {
throw new ApiException(ApiException.Type.DOES_NOT_EXIST, ACTION_PARAM_SCRIPT_NAME);
}
return scriptName;
} |
java | public Block getBlock(String sqlquery, Collection queryParams, int startIndex, int count) {
Debug.logVerbose("[JdonFramework]enter getBlock .. ", module);
if ((count > this.blockLength) || (count <= 0)) { // every query max
// length must be
// little than
// blockLength
count = this.blockLength;
... |
python | def move(self, new_location):
"""Move resource to `new_location`"""
self._perform_change(change.MoveResource(self, new_location),
'Moving <%s> to <%s>' % (self.path, new_location)) |
java | public HttpClientResponseBuilder withStatus(int statusCode) {
Action lastAction = newRule.getLastAction();
StatusResponse statusAction = new StatusResponse(lastAction, statusCode);
newRule.overrideLastAction(statusAction);
return this;
} |
python | def write_matrix(outputfile, matrix):
""" Write down the provided matrix in the specified outputfile.
:arg outputfile, name of the outputfile in which the QTLs found are
written.
:arg matrix, the list of lists of data to write.
"""
try:
stream = open(outputfile, 'w')
for row... |
java | public EEnum getIfcFanTypeEnum() {
if (ifcFanTypeEnumEEnum == null) {
ifcFanTypeEnumEEnum = (EEnum) EPackage.Registry.INSTANCE.getEPackage(Ifc2x3tc1Package.eNS_URI)
.getEClassifiers().get(836);
}
return ifcFanTypeEnumEEnum;
} |
python | def full_route(self):
'''The full :attr:`route` for this :class:`.Router`.
It includes the :attr:`parent` portion of the route if a parent
router is available.
'''
if self._parent:
return self._parent.full_route + self._route
else:
return self._ro... |
java | public ChatMessage createFinalMessage(MessageSentResponse response) {
return ChatMessage.builder()
.setMessageId(response.getId())
.setSentEventId(response.getEventId())
.setConversationId(conversationId)
.setSentBy(sender)
.setFrom... |
java | private void addWorker() {
Throwable ex = null;
ForkJoinWorkerThread wt = null;
try {
if ((wt = factory.newThread(this)) != null) {
wt.start();
return;
}
} catch (Throwable e) {
ex = e;
}
deregisterWorker... |
java | public T itemClicked(AdapterView.OnItemClickListener listener) {
if (view instanceof AdapterView) {
AdapterView<?> alv = (AdapterView<?>) view;
alv.setOnItemClickListener(listener);
}
return self();
} |
java | private final void closeRAF() throws LockFile.UnexpectedFileIOException {
if (raf != null) {
try {
raf.close();
} catch (IOException ex) {
throw new UnexpectedFileIOException(this, "closeRAF", ex);
} finally {
raf = null;
... |
java | @Override
public Map<String, Long> getChildRequestsExecutionsByRequestId() {
if (childRequestsExecutionsByRequestId == null) {
return Collections.emptyMap();
}
// pas de nouvelle instance de map ici pour raison de perf
// (la méthode est utilisée sur un seul thread)
return childRequestsExecutionsBy... |
java | public com.google.api.ads.adwords.axis.v201809.cm.AssetType getAssetSubtype() {
return assetSubtype;
} |
python | def parse_known_args():
""" Parse command line arguments
"""
parser = argparse.ArgumentParser()
parser.add_argument('-V', '--version',
action='store_true',
dest='version',
help='Print the version number and exit')
mutually_exclu... |
java | public static SelectOptions getViewSelectOptions(CmsObject cms, String value) {
Locale locale = OpenCms.getWorkplaceManager().getWorkplaceLocale(cms);
List<String> options = new ArrayList<String>();
List<String> values = new ArrayList<String>();
int selectedIndex = 0;
List<I_C... |
python | def chunked_X(self, chunk_size: Optional[int] = None):
"""Return an iterator over the rows of the data matrix :attr:`X`.
Parameters
----------
chunk_size
Row size of a single chunk.
"""
if chunk_size is None:
# Should be some adaptive code
... |
java | @Nullable
public static StackTraceElement findCallerOf(Class<?> target, Throwable throwable, int skip) {
checkNotNull(target, "target");
checkNotNull(throwable, "throwable");
if (skip < 0) {
throw new IllegalArgumentException("skip count cannot be negative: " + skip);
}
// Getting the full s... |
java | public Observable<ServiceResponse<UUID>> createPrebuiltEntityRoleWithServiceResponseAsync(UUID appId, String versionId, UUID entityId, CreatePrebuiltEntityRoleOptionalParameter createPrebuiltEntityRoleOptionalParameter) {
if (this.client.endpoint() == null) {
throw new IllegalArgumentException("Para... |
java | public Sequence compile( String equation , boolean assignment, boolean debug ) {
functions.setManagerTemp(managerTemp);
Sequence sequence = new Sequence();
TokenList tokens = extractTokens(equation,managerTemp);
if( tokens.size() < 3 )
throw new RuntimeException("Too few t... |
python | def request_command_status(blink, network, command_id):
"""
Request command status.
:param blink: Blink instance.
:param network: Sync module network id.
:param command_id: Command id to check.
"""
url = "{}/network/{}/command/{}".format(blink.urls.base_url,
... |
python | def classify_imports(self, chunk):
"""
Possible import statements:
import name
from name import subname
from name import subname1 as subname2
from name import *
from name import tuple
AST representations:
ImportFrom:
module=name
names=[alias(name,... |
java | private String valueOrBlank(Dataset dataset, int idx) {
if (idx < dataset.numPoints()) {
return Double.toString(dataset.get(idx));
} else {
return "";
}
} |
java | public ModifyInstanceCreditSpecificationRequest withInstanceCreditSpecifications(InstanceCreditSpecificationRequest... instanceCreditSpecifications) {
if (this.instanceCreditSpecifications == null) {
setInstanceCreditSpecifications(new com.amazonaws.internal.SdkInternalList<InstanceCreditSpecificati... |
python | def _set_pspf_timer(self, v, load=False):
"""
Setter method for pspf_timer, mapped from YANG variable /isis_state/router_isis_config/pspf_timer (container)
If this variable is read-only (config: false) in the
source YANG file, then _set_pspf_timer is considered as a private
method. Backends looking ... |
python | def in_distance(self, distance, fields, points, annotate='_ed_distance'):
"""Filter rows inside a circunference of radius distance `distance`
:param distance: max distance to allow
:param fields: `tuple` with the fields to filter (latitude, longitude)
:param points: center o... |
java | public static DMatrixRMaj identity(int width )
{
DMatrixRMaj ret = new DMatrixRMaj(width,width);
for( int i = 0; i < width; i++ ) {
ret.set(i,i,1.0);
}
return ret;
} |
python | def decodetx(tx_hex, coin_symbol='btc', api_key=None):
'''
Takes a signed transaction hex binary (and coin_symbol) and decodes it to JSON.
Does NOT broadcast the transaction to the bitcoin network.
Especially useful for testing/debugging and sanity checking
'''
assert is_valid_coin_symbol(coin... |
python | def find_simpleobject_file_occurrences(self, location) -> Dict[str, str]:
"""
Implementation of the parent abstract method.
:param location:
:return: a dictionary{ext : file_path}
"""
parent_dir = dirname(location)
if parent_dir is '':
parent_dir = '.... |
python | def writeList(self, n, is_proxy=False):
"""
Writes a C{tuple}, C{set} or C{list} to the stream.
@type n: One of C{__builtin__.tuple}, C{__builtin__.set}
or C{__builtin__.list}
@param n: The C{list} data to be encoded to the AMF3 data stream.
"""
if self.use_p... |
python | def padded_sequence_accuracy(predictions,
labels,
weights_fn=common_layers.weights_nonzero):
"""Percentage of times that predictions matches labels everywhere (non-0)."""
# If the last dimension is 1 then we're using L1/L2 loss.
if common_layers.shape_list... |
python | def get_forms(self):
"""
Initializes the forms defined in `form_classes` with initial data from `get_initial()`,
kwargs from get_form_kwargs() and form instance object from `get_objects()`.
"""
forms = {}
objects = self.get_objects()
initial = self.get_initial()
... |
python | def list(self):
"""List available reports from the server by returning a dictionary
with reports classified by data model:
.. doctest::
:options: +SKIP
>>> odoo.report.list()['account.invoice']
[{'name': u'Duplicates',
'report_name': u'account.... |
java | public DnsNameAvailabilityResultInner checkDnsNameAvailability(String location, String domainNameLabel) {
return checkDnsNameAvailabilityWithServiceResponseAsync(location, domainNameLabel).toBlocking().single().body();
} |
java | @Override
public Evaluator getAttributeEvaluator(String name, String mode, String value) {
return new GroupMembershipEvaluator(mode, name);
} |
python | def order_target(self) -> Optional[Union[int, Point2]]:
""" Returns the target tag (if it is a Unit) or Point2 (if it is a Position)
from the first order, returns None if the unit is idle """
if self.orders:
if isinstance(self.orders[0].target, int):
return self.order... |
java | public final AntlrDatatypeRuleToken ruleInnerVarID() throws RecognitionException {
AntlrDatatypeRuleToken current = new AntlrDatatypeRuleToken();
Token this_ID_0=null;
Token kw=null;
enterRule();
try {
// InternalSARL.g:9921:2: ( (this_ID_0= RULE_ID | kw= 'abstra... |
java | @Override
public ListCompatibleImagesResult listCompatibleImages(ListCompatibleImagesRequest request) {
request = beforeClientExecution(request);
return executeListCompatibleImages(request);
} |
python | def directed_bipartition_of_one(seq):
"""Generate directed bipartitions where one part is of length 1.
Args:
seq (Iterable): The sequence to partition.
Returns:
list[tuple[tuple]]: A list of tuples containing each of the two
partitions.
Example:
>>> partitions = direct... |
python | def collect(self, force=False):
"""
calls collect_impl and stores the results as the child changes of
this super-change. Returns a tuple of the data generated from
collect_impl. Caches the result rather than re-computing each
time, unless force is True
"""
if for... |
python | def Plane(pos=(0, 0, 0), normal=(0, 0, 1), sx=1, sy=None, c="g", bc="darkgreen",
alpha=1, texture=None):
"""
Draw a plane of size `sx` and `sy` oriented perpendicular to vector `normal`
and so that it passes through point `pos`.
|Plane|
"""
if sy is None:
sy = sx
ps = vtk... |
java | public ClassInfoList getClassesImplementing(final String interfaceName) {
if (closed.get()) {
throw new IllegalArgumentException("Cannot use a ScanResult after it has been closed");
}
if (!scanSpec.enableClassInfo) {
throw new IllegalArgumentException("Please call ClassGr... |
java | public List<Boolean> getBooleanList(final String param) {
return getList(param, new StrictStringToBoolean(),
new AlwaysValid<Boolean>(), "boolean");
} |
python | def doc_to_html(doc, doc_format="ROBOT"):
"""Convert documentation to HTML"""
from robot.libdocpkg.htmlwriter import DocToHtml
return DocToHtml(doc_format)(doc) |
java | @Override
public java.util.concurrent.Future<UnsubscribeResult> unsubscribeAsync(String subscriptionArn,
com.amazonaws.handlers.AsyncHandler<UnsubscribeRequest, UnsubscribeResult> asyncHandler) {
return unsubscribeAsync(new UnsubscribeRequest().withSubscriptionArn(subscriptionArn), asyncHandler... |
python | def delete(cls, app_id):
"""
Delete an app by issuing a DELETE request to the /apps/ID endpoint.
"""
conn = Qubole.agent()
return conn.delete(cls.element_path(app_id)) |
java | private void insert(Geometry geom, GeometryIndex index, Coordinate coordinate)
throws GeometryIndexNotFoundException {
if (index.hasChild() && geom.getGeometries() != null && geom.getGeometries().length > index.getValue()) {
insert(geom.getGeometries()[index.getValue()], index.getChild(), coordinate);
} else ... |
python | def remove_file(filepath):
''' Delete a file '''
try:
os.remove(os.path.abspath(os.path.expanduser(filepath)))
except OSError as e:
if e.errno != errno.ENOENT:
raise |
java | public IfcReinforcingBarRoleEnum createIfcReinforcingBarRoleEnumFromString(EDataType eDataType,
String initialValue) {
IfcReinforcingBarRoleEnum result = IfcReinforcingBarRoleEnum.get(initialValue);
if (result == null)
throw new IllegalArgumentException(
"The value '" + initialValue + "' is not a va... |
java | private int findSpanStart(TextCursor cursor, int limit) {
for (int i = cursor.currentOffset; i < limit; i++) {
char c = cursor.text.charAt(i);
if (c == '*' || c == '_') {
// Check prev and next symbols
if (isGoodAnchor(cursor.text, i - 1) && isNotSymbol(cu... |
java | private static void recordVariable(final TypeVariable var, final List<TypeVariable> found) {
// prevent cycles
if (!found.contains(var)) {
found.add(var);
for (Type type : var.getBounds()) {
findVariables(type, found);
}
}
} |
java | public String addMpNews(MpNews mpNews) {
String url = WxEndpoint.get("url.material.mpnews.add");
String json = JsonMapper.nonEmptyMapper().toJson(mpNews);
logger.info("add mpnews: {}", json);
String response = wxClient.post(url, json);
Map<String, Object> result = JsonMap... |
python | def drawBernoulli(N,p=0.5,seed=0):
'''
Generates arrays of booleans drawn from a simple Bernoulli distribution.
The input p can be a float or a list-like of floats; its length T determines
the number of entries in the output. The t-th entry of the output is an
array of N booleans which are True wit... |
python | def _piped_bamprep_region_gatk(data, region, prep_params, out_file, tmp_dir):
"""Perform semi-piped BAM preparation using Picard/GATK tools.
"""
broad_runner = broad.runner_from_config(data["config"])
cur_bam, cl = _piped_input_cl(data, region, tmp_dir, out_file, prep_params)
if not prep_params["rea... |
python | def get_products_metadata_path(year, month, day):
""" Get paths to multiple products metadata """
products = {}
path = 'products/{0}/{1}/{2}/'.format(year, month, day)
for key in bucket.objects.filter(Prefix=path):
product_path = key.key.replace(path, '').split('/')
name = product_path[... |
python | def _ask_which_gist(self, matches):
"""
Asks user which gist to use in case of more than one gist matching the
instance filename.
:param matches: (list) of dictioaries generated within select_gists()
:return: (dict) of the selected gist
"""
# ask user which gist t... |
java | @Override
public List<CPInstance> findAll(int start, int end) {
return findAll(start, end, null);
} |
java | private void removeAsyncListener() throws JMSException {
if (TraceComponent.isAnyTracingEnabled() && tc.isEntryEnabled())
SibTr.entry(this, tc, "removeAsyncListener");
// if the consumer is null, there is nothing to do
if (consumer != null) {
try {
// sto... |
java | public void post(Notification event) {
for (Map.Entry<Object, List<SubscriberMethod>> entry : listeners.entrySet()) {
for (SubscriberMethod method : entry.getValue()) {
if (method.eventTypeToInvokeOn.isInstance(event)) {
try {
method.method... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.