language stringclasses 2
values | func_code_string stringlengths 63 466k |
|---|---|
java | public Object fromStream(final byte[] iStream) throws IOException {
if (iStream == null || iStream.length == 0)
// NULL VALUE
return null;
final int classNameSize = OBinaryProtocol.bytes2int(iStream);
if (classNameSize <= 0)
OLogManager.instance().error(this, "Class signature not found in ANY ele... |
python | def install_requirements(self, requires):
""" Install the listed requirements
"""
# Temporarily install dependencies required by setup.py before trying to import them.
sys.path[0:0] = ['setup-requires']
pkg_resources.working_set.add_entry('setup-requires')
to_install = l... |
java | private IntIntPair totalPivotSearch(int k) {
double max = 0;
int i, j, pivotRow = k, pivotCol = k;
double absValue;
for(i = k; i < coeff.length; i++) {
for(j = k; j < coeff[0].length; j++) {
// compute absolute value of
// current entry in absValue
absValue = Math.abs(coeff... |
java | @Override
public void mapTileRequestExpiredTile(MapTileRequestState pState, Drawable pDrawable) {
putTileIntoCache(pState.getMapTile(), pDrawable, ExpirableBitmapDrawable.getState(pDrawable));
// tell our caller we've finished and it should update its view
for (final Handler handler : mTileRequestCompleteHandle... |
java | public java.util.List<NodeGroupConfiguration> getNodeGroupConfiguration() {
if (nodeGroupConfiguration == null) {
nodeGroupConfiguration = new com.amazonaws.internal.SdkInternalList<NodeGroupConfiguration>();
}
return nodeGroupConfiguration;
} |
java | public static boolean parseBoolean(String value, boolean defaultValue)
{
if (value == null)
return defaultValue;
value = value.trim();
// any of the following will
final String[] acceptedTrue = new String[]{ "yes", "true", "t", "y", "1" };
final String[] acceptedFalse = new String[]{ "no", "false", "f"... |
python | def is_prime( n ):
"""Return True if x is prime, False otherwise.
We use the Miller-Rabin test, as given in Menezes et al. p. 138.
This test is not exact: there are composite values n for which
it returns True.
In testing the odd numbers from 10000001 to 19999999,
about 66 composites got past the first te... |
java | private static BigInteger divideAndRound(BigInteger bdividend, long ldivisor, int roundingMode) {
boolean isRemainderZero; // record remainder is zero or not
int qsign; // quotient sign
long r = 0; // store quotient & remainder in long
MutableBigInteger mq = null; // store quotient
... |
java | public EventJournalConfig findCacheEventJournalConfig(String name) {
name = getBaseName(name);
final EventJournalConfig config = lookupByPattern(configPatternMatcher, cacheEventJournalConfigs, name);
if (config != null) {
return config.getAsReadOnly();
}
return getCac... |
java | public static boolean validateTokenRequest(TokenRequestDto tokenRequestDto, OAuthApplicationDto oAuthApplicationDto) {
// basic check
try {
String decodedRedirectUri = java.net.URLDecoder.decode(tokenRequestDto.getRedirectUri(), "UTF-8");
if (StringUtils.isNotBlank(oAuthApplicati... |
java | public static ObjectName makeObjectName(String domainName, String beanName, String[] folderNameStrings) {
return makeObjectName(domainName, beanName, null, folderNameStrings);
} |
java | public static Map<String, String> parseUrl(String url) {
Map<String, String> result = new HashMap<>(8);
result.put(PROTOCOL_KEY, ValueConsts.EMPTY_STRING);
result.put(HOST_KEY, ValueConsts.EMPTY_STRING);
result.put(PATH_KEY, ValueConsts.EMPTY_STRING);
if (Checker.isNotEmpty(url))... |
java | public int doEndTag() throws JspException
{
ServletRequest req = pageContext.getRequest();
String fmtErrors = null;
if (_formatterError) {
fmtErrors = getErrorsFromBody();
}
if (hasErrors())
return reportAndExit(EVAL_PAGE);
_state.disabled = ... |
java | protected String[] prepareStringArray(Object value, String propertyName, Class<?> proeprtyType, FormMappingOption option) { // not null (empty if null)
final String[] result;
if (value != null && value instanceof String[]) {
result = (String[]) value;
} else {
result = va... |
python | def datetime_parsing(text, base_date=datetime.now()):
"""
Extract datetime objects from a string of text.
"""
matches = []
found_array = []
# Find the position in the string
for expression, function in regex:
for match in expression.finditer(text):
matches.append((match.... |
java | @Override
public ModelMapper getObject() throws Exception {
// instantiates new instance of mapper
final ModelMapper modelMapper = new ModelMapper();
// configures the mapper
configure(modelMapper);
// returns the mapper
return modelMapper;
} |
java | @GET
@Produces(MediaType.APPLICATION_JSON)
@Path("/metrics/schemarecords")
@Description("Discover metric schema records. If type is specified, then records of that particular type are returned.")
public List<? extends Object> getRecords(@Context HttpServletRequest req,
@DefaultValue("*") @QueryP... |
java | @Override
public void messageReceived(NextFilter nextFilter, S session,
AmqpSecureMessage message) throws Exception {
nextFilter.messageReceived(session, message);
} |
java | public Parameters append(String key, String value) {
if (nameValuePairs == null) {
nameValuePairs = new ArrayList<NameValuePair>();
}
nameValuePairs.add(new BasicNameValuePair(key, value));
return this;
} |
java | public EnquireLinkResp enquireLinkResp(byte[] b) {
EnquireLinkResp resp = new EnquireLinkResp();
assignHeader(resp, b);
return resp;
} |
java | @Override
public DeleteLogSubscriptionResult deleteLogSubscription(DeleteLogSubscriptionRequest request) {
request = beforeClientExecution(request);
return executeDeleteLogSubscription(request);
} |
java | public static CouchbaseCluster create(final List<String> nodes) {
return new CouchbaseCluster(
DefaultCouchbaseEnvironment.create(),
ConnectionString.fromHostnames(nodes),
false
);
} |
python | def not_right(self, num):
"""
WITH SLICES BEING FLAT, WE NEED A SIMPLE WAY TO SLICE FROM THE LEFT [:-num:]
"""
if num == None:
return FlatList([_get_list(self)[:-1:]])
if num <= 0:
return FlatList.EMPTY
return FlatList(_get_list(self)[:-num:]) |
python | def compute(self, inputVector, learn, activeArray, burstingColumns,
predictedCells):
"""
This is the primary public method of the class. This function takes an input
vector and outputs the indices of the active columns.
New parameters defined here:
----------------------------
@pa... |
python | def bind(self, instance, auto=False):
"""
Bind deps to instance
:param instance:
:param auto: follow update of DI and refresh binds once we will get something new
:return:
"""
methods = [
(m, cls.__dict__[m])
for cls in inspect.getmro(type... |
java | public static HashedWheelTimer newTimer(final int ticks,
final int ticks_per_wheel, final String name) {
class TimerThreadNamer implements ThreadNameDeterminer {
@Override
public String determineThreadName(String currentThreadName,
String proposedThreadName) throws Exception {
r... |
java | public Collection<Retrospective> getRetrospectives(
RetrospectiveFilter filter) {
filter = (filter == null) ? new RetrospectiveFilter() : filter;
filter.team.clear();
filter.team.add(this);
return getInstance().get().retrospectives(filter);
} |
java | private void activityResumed(Activity activity) {
getConfigLogger().verbose(getAccountId(), "App in foreground");
checkTimeoutSession();
if(!isAppLaunchPushed()) {
pushAppLaunchedEvent();
onTokenRefresh();
}
if (!inCurrentSession()) {
//onToken... |
python | def timeid(self, data: ['SASdata', str] = None,
by: str = None,
id: str = None,
out: [str, 'SASdata'] = None,
procopts: str = None,
stmtpassthrough: str = None,
**kwargs: dict) -> 'SASresults':
"""
Python method to... |
python | def train_model(params: Params,
serialization_dir: str,
file_friendly_logging: bool = False,
recover: bool = False,
force: bool = False,
cache_directory: str = None,
cache_prefix: str = None) -> Model:
"""
Trains the... |
python | def loadd(self, ava):
""" expects a special set of keys """
if "attributes" in ava:
for key, val in ava["attributes"].items():
self.attributes[key] = val
try:
self.tag = ava["tag"]
except KeyError:
if not self.tag:
rai... |
python | def get_cv_idxs(n, cv_idx=0, val_pct=0.2, seed=42):
""" Get a list of index values for Validation set from a dataset
Arguments:
n : int, Total number of elements in the data set.
cv_idx : int, starting index [idx_start = cv_idx*int(val_pct*n)]
val_pct : (int, float), validation set... |
python | def calc_sun_times(self):
"""
Computes the times of sunrise, solar noon, and sunset for each day.
"""
self.sun_times = melodist.util.get_sun_times(self.data_daily.index, self.lon, self.lat, self.timezone) |
python | def reboot(self):
"""Reboots the device.
Generally one should use this method to reboot the device instead of
directly calling `adb.reboot`. Because this method gracefully handles
the teardown and restoration of running services.
This method is blocking and only returns when th... |
python | def job_disable(self, job_id):
"""
Disable a job. Disabled jobs will not be executed.
:param job_id: Job identifier to disable.
:type job_id: :py:class:`uuid.UUID`
"""
job_id = normalize_job_id(job_id)
with self._job_lock:
job_desc = self._jobs[job_id]
job_desc['enabled'] = False |
java | @SafeVarargs
private final <T> Set<T> join(Set<T>... sets)
{
Set<T> result = new HashSet<>();
if (sets == null)
return result;
for (Set<T> set : sets)
{
if (set != null)
result.addAll(set);
}
return result;
} |
python | def get_resource_relationships_for_source_resource_on_date(self, source_resource_id, from_, to):
"""Pass through to provider ResourceRelationshipLookupSession.get_resource_relationships_for_source_resource_on_date"""
# Implemented from azosid template for -
# osid.relationship.RelationshipLookup... |
java | public <D, S> ForkedStream<D, S>
forkStream(RecordStreamWithMetadata<D, S> inputStream, ForkOperator<S, D> forkOperator, WorkUnitState workUnitState)
throws Exception {
int branches = forkOperator.getBranches(workUnitState);
// Set fork.branches explicitly here so the rest task flow can pick it up
... |
python | def _get_connect_kwargs(self, host, port, user, password, database_url):
"""
Get the params to pass to psycopg2.connect() based on passed-in vals
from yaml settings file
"""
if database_url:
return {'dsn': database_url}
if not host:
raise CheckExc... |
java | private EvaluationResult callHelper(URI type, URI id, URI issuer,
URI category, int adType) {
if (finder != null) {
return finder.findAttribute(type, id, issuer, category,
this, adType);
} else {
logg... |
java | public static <I, D> List<Word<I>> suffixesForLocalOutput(Query<I, D> ceQuery,
int localSuffixIdx,
boolean allSuffixes) {
if (localSuffixIdx == -1) {
return Collections.emptyL... |
java | @Override
protected void updateStackingContexts()
{
super.updateStackingContexts();
if (stackingParent != null)
{
if (formsStackingContext()) //all the positioned boxes are considered as separate stacking contexts
{
stackingParent.getStackingContex... |
python | def create(self, unique_name, domain_suffix=values.unset):
"""
Create a new EnvironmentInstance
:param unicode unique_name: The unique_name
:param unicode domain_suffix: The domain_suffix
:returns: Newly created EnvironmentInstance
:rtype: twilio.rest.serverless.v1.serv... |
java | public Collection<Plugin> removeUncheckedPlugins( Collection<String> uncheckedPlugins, Collection<Plugin> plugins )
throws MojoExecutionException
{
if ( uncheckedPlugins != null && !uncheckedPlugins.isEmpty() )
{
for ( String pluginKey : uncheckedPlugins )
{
... |
java | public BaseMessageFilter setupRecordListener(JMessageListener listener, boolean bTrackMultipleRecords, boolean bAllowEchos, boolean bReceiveAllAdds)
{
BaseMessageFilter filter = null;
MessageManager messageManager = null;
if (listener == null)
listener = this.getRecordOwner();
... |
java | @NullSafe
public static boolean createFile(File path) {
try {
return (path != null && !path.isDirectory() && (path.isFile() || path.createNewFile()));
}
catch (IOException ignore) {
return false;
}
} |
java | private static void validate(String name, Collection<Geometry> geometries, int extent) {
if (name == null) {
throw new IllegalArgumentException("layer name is null");
}
if (geometries == null) {
throw new IllegalArgumentException("geometry collection is null");
}
... |
java | protected boolean jobTooOld(final JobInfo jobInfo, final JobDefinition jobDefinition) {
final Optional<OffsetDateTime> stopped = jobInfo.getStopped();
if (stopped.isPresent() && jobDefinition.maxAge().isPresent()) {
final OffsetDateTime deadlineToRerun = stopped.get().plus(jobDefinition.maxA... |
java | public final SortedSet<T> toSortedSet(final Comparator<? super T> comparator) {
return ImmutableSortedSet.copyOf(comparator,
toCollection(Lists.<T>newArrayListWithCapacity(256)));
} |
java | private void updateFailedLoginAttempts(int numberOfAttempts) {
UserSecret userSecret = getSecret();
userSecret.setFailedLoginAttempts(numberOfAttempts);
if (userSecret.getFailedLoginAttempts() >= MAX_FAILED_LOGIN_ATTEMPTS) {
if (!(userSecret.getLastFailedAuthentication() != null
&& (Instant.... |
java | private StringBuffer toQueryPrefix(String t) {
StringBuffer sb = new StringBuffer(255);
return sb.append(selstar).append(t).append(whereTrue);
} |
java | public boolean isSameNode(Node other) {
return (other instanceof NodeImpl)
&& (((NodeImpl) other).tree == tree)
&& (((NodeImpl) other).node == node);
} |
python | def _graph_add_edge(self, src_block_id, dst_block_id, **kwargs):
"""
Add an edge onto the graph.
:param BlockID src_block_id: The block ID for source node.
:param BlockID dst_block_id: The block Id for destination node.
:param str jumpkind: The jumpkind of the edge.
... |
java | private void checkC() throws DatatypeException, IOException {
if (context.length() == 0) {
appendToContext(current);
}
current = reader.read();
appendToContext(current);
skipSpaces();
boolean expectNumber = true;
for (;;) {
switch (current... |
java | public static DocLink fragment(String fragment) {
return new DocLink((String) null, (String) null, fragment);
} |
python | def index(args):
"""
%prog index database.fasta
`
Wrapper for `gmap_build`. Same interface.
"""
p = OptionParser(index.__doc__)
p.add_option("--supercat", default=False, action="store_true",
help="Concatenate reference to speed up alignment")
opts, args = p.parse_args(args)
... |
python | def _receive(self):
"""Receive any incoming socket data.
If an error is thrown, handle it and return an empty string.
:return: data_in
:rtype: bytes
"""
data_in = EMPTY_BUFFER
try:
data_in = self._read_from_socket()
except socket.timeout:... |
python | def __try_instantiate(self, component_context, instance):
# type: (ComponentContext, object) -> bool
"""
Instantiates a component, if all of its handlers are there. Returns
False if a handler is missing.
:param component_context: A ComponentContext bean
:param instance: ... |
python | def command(self, name, *args):
"""Execute a raw command."""
args = [name.encode('utf-8')] + [ (arg if type(arg) is bytes else str(arg).encode('utf-8'))
for arg in args if arg is not None ] + [None]
_mpv_command(self.handle, (c_char_p*len(args))(*args)) |
python | def translation(language):
"""
Return a translation object in the default 'django' domain.
"""
global _translations
if language not in _translations:
_translations[language] = Translations(language)
return _translations[language] |
java | public synchronized GoogleCloudStorageItemInfo putItem(GoogleCloudStorageItemInfo item) {
StorageResourceId id = item.getResourceId();
PrefixKey key = new PrefixKey(id.getBucketName(), id.getObjectName());
CacheValue<GoogleCloudStorageItemInfo> value =
new CacheValue<GoogleCloudStorageItemInfo>(item... |
python | def submit_bsub_job(command, job_id=None, dependent_id=None, memory=None, requeue_code=None, logfile=None):
""" construct a bsub job submission command
Args:
command: list of strings that forma unix command
job_id: string for job ID for submission
dependent_id: job ID, or list of jo... |
java | public void marshall(DescribeActivationsRequest describeActivationsRequest, ProtocolMarshaller protocolMarshaller) {
if (describeActivationsRequest == null) {
throw new SdkClientException("Invalid argument passed to marshall(...)");
}
try {
protocolMarshaller.marshall(d... |
java | public static void main (String[] args) {
try {
h2omapper m = new h2omapper();
m.run(null);
}
catch (Exception e) {
System.out.println (e);
}
} |
java | public Set<Key> keySet(int access) {
Set<Key> set = new LinkedHashSet<Key>();
Map.Entry<Key, Member> entry;
Iterator<Entry<Key, Member>> it = _data.entrySet().iterator();
while (it.hasNext()) {
entry = it.next();
if (entry.getValue().getAccess() <= access) set.add(entry.getKey());
}
return set;
} |
python | def get_stats(self, nid=None):
"""Get statistics for class
:type nid: str
:param nid: This is the ID of the network to get stats
from. This is optional and only to override the existing
`network_id` entered when created the class
"""
r = self.request(
... |
python | def channel_to_id(slack, channel):
""" Surely there's a better way to do this... """
channels = slack.api_call('channels.list').get('channels') or []
groups = slack.api_call('groups.list').get('groups') or []
if not channels and not groups:
raise RuntimeError("Couldn't get channels and groups."... |
java | public static boolean copyFile(final File source, final File destination,
final Charset sourceEncoding, final Charset destinationEncoding, final boolean lastModified)
throws IOException
{
if (source.isDirectory())
{
throw new IllegalArgumentException("The source File " + destination.getName()
+ " should... |
java | public static dnsview_gslbservice_binding[] get(nitro_service service, String viewname) throws Exception{
dnsview_gslbservice_binding obj = new dnsview_gslbservice_binding();
obj.set_viewname(viewname);
dnsview_gslbservice_binding response[] = (dnsview_gslbservice_binding[]) obj.get_resources(service);
return r... |
java | public static <T extends TypeDefinition> ElementMatcher.Junction<T> noneOf(Type... value) {
return noneOf(new TypeList.Generic.ForLoadedTypes(value));
} |
python | def stratHeun(f, G, y0, tspan, dW=None):
"""Use the Stratonovich Heun algorithm to integrate Stratonovich equation
dy = f(y,t)dt + G(y,t) \circ dW(t)
where y is the d-dimensional state vector, f is a vector-valued function,
G is an d x m matrix-valued function giving the noise coefficients and
dW(t... |
java | protected static List<SpecNode> getAllSpecNodes(final ContentSpec contentSpec) {
final List<SpecNode> specNodes = new ArrayList<SpecNode>();
for (final Node childNode : contentSpec.getNodes()) {
if (childNode instanceof SpecNode) {
specNodes.add((SpecNode) childNode);
... |
java | @Override
public PackingPlan repack(PackingPlan currentPackingPlan, Map<String, Integer> componentChanges)
throws PackingException {
int initialNumContainer = TopologyUtils.getNumContainers(topology);
int initialNumInstance = TopologyUtils.getTotalInstance(topology);
double initialNumInstancePerCont... |
java | @Override
public MapReadResult readLabels(Tile upperLeft, Tile lowerRight) {
return readMapData(upperLeft, lowerRight, Selector.LABELS);
} |
java | public void setOptions(String[][] options) throws Fault {
LinkedHashSet<String[]> customTagStrs = new LinkedHashSet<>();
// Some options, specifically -link and -linkoffline, require that
// the output directory has already been created: so do that first.
for (String[] os : options) {
... |
python | def get_tokens(self, auth, username=None):
"""
Returns the tokens owned by the specified user. If no user is specified,
uses the user authenticated by ``auth``.
:param auth.Authentication auth: authentication for user to retrieve.
Must be a usern... |
java | public void parse(final InsertStatement insertStatement) {
if (!lexerEngine.skipIfEqual(getCustomizedInsertKeywords())) {
return;
}
lexerEngine.accept(DefaultKeyword.DUPLICATE);
lexerEngine.accept(DefaultKeyword.KEY);
lexerEngine.accept(DefaultKeyword.UPDATE);
... |
python | def parse(datetime_str, timezone=None, isofirst=True, dayfirst=True, yearfirst=True):
"""
Parses a datetime string and returns a `Delorean` object.
:param datetime_str: The string to be interpreted into a `Delorean` object.
:param timezone: Pass this parameter and the returned Delorean object will be n... |
java | public Event withAttributes(java.util.Map<String, String> attributes) {
setAttributes(attributes);
return this;
} |
java | public List<Integer> locationsToReadForDecode(List<Integer> erasedLocations)
throws TooManyErasedLocations {
List<Integer> locationsToRead = new ArrayList<Integer>(stripeSize());
int limit = stripeSize() + paritySize();
// Loop through all possible locations in the stripe.
for (int loc = limit - 1... |
java | @GET
@Path(WEBUI_CONFIG)
@ReturnType("alluxio.wire.MasterWebUIConfiguration")
public Response getWebUIConfiguration() {
return RestUtils.call(() -> {
MasterWebUIConfiguration response = new MasterWebUIConfiguration();
response.setWhitelist(mFileSystemMaster.getWhiteList());
TreeSet<Triple<... |
python | def _cnf(lexer, varname):
"""Return a DIMACS CNF."""
_expect_token(lexer, {KW_p})
_expect_token(lexer, {KW_cnf})
nvars = _expect_token(lexer, {IntegerToken}).value
nclauses = _expect_token(lexer, {IntegerToken}).value
return _cnf_formula(lexer, varname, nvars, nclauses) |
python | def directory(self, query, **kwargs):
"""Search by users or channels on all server."""
if isinstance(query, dict):
query = str(query).replace("'", '"')
return self.__call_api_get('directory', query=query, kwargs=kwargs) |
python | def render_sparkline(self, **kwargs):
"""Render a sparkline"""
spark_options = dict(
width=200,
height=50,
show_dots=False,
show_legend=False,
show_x_labels=False,
show_y_labels=False,
spacing=0,
margin=5,
... |
python | def list_changes(self):
"""
Return a list of modified records.
This is only applicable for attached tables.
Returns:
A list of `(row_index, record)` tuples of modified records
Raises:
:class:`delphin.exceptions.ItsdbError`: when called on a
... |
python | def move_folder(self, to_folder, *, update_parent_if_changed=True):
""" Move this folder to another folder
:param to_folder: the destination Folder/folder_id to move into
:type to_folder: mailbox.Folder or str
:param bool update_parent_if_changed: updates self.parent with the
n... |
java | public static String getWebViewLink(Drive drive, String fileId) {
try {
return getWebViewLink(getFile(drive, fileId));
} catch (IOException e) {
logger.log(Level.SEVERE, String.format( "Failed to build Google Drive URL for file %s", fileId), e);
}
return null;
} |
python | def get_keys(self):
'''
获取配置并检查是否更改
'''
if not os.path.exists(PATH_CONFIG):
with open(PATH_CONFIG, 'w') as F:
F.write(CONFIG)
else:
config = ConfigParser.ConfigParser()
with open(PATH_CONFIG, 'r') as cfgfile:
con... |
java | public synchronized void setInetAddrPort(InetAddrPort address)
{
if (_address != null && _address.equals(address)) return;
if (isStarted()) log.warn(this + " is started");
_address = address;
} |
python | def add_edges_from(self, ebunch, attr_dict=None, **attr):
"""Add all the edges in ebunch.
Parameters
----------
ebunch : container of edges
Each edge given in the container will be added to the
graph. The edges can be:
- 3-tuples (u,v,d) for an e... |
python | def run_prepare(*data):
"""
Run seqcluster prepare to merge all samples in one file
"""
out_dir = os.path.join(dd.get_work_dir(data[0][0]), "seqcluster", "prepare")
out_dir = os.path.abspath(safe_makedir(out_dir))
prepare_dir = os.path.join(out_dir, "prepare")
tools = dd.get_expression_calle... |
python | def save_and_close_enable(self):
"""Handle the data change event to enable the save and close button."""
if self.btn_save_and_close:
self.btn_save_and_close.setEnabled(True)
self.btn_save_and_close.setAutoDefault(True)
self.btn_save_and_close.setDefault(True) |
java | public ComputeNodeUpdateUserHeaders withLastModified(DateTime lastModified) {
if (lastModified == null) {
this.lastModified = null;
} else {
this.lastModified = new DateTimeRfc1123(lastModified);
}
return this;
} |
java | public synchronized void getUpdatedData() {
if (!isUpdateDataNeeded()) {
return;
}
this._projectResult = new ProjectLrResults();
_workedBuilds = new ArrayList<Integer>();
RunList<? extends Run> projectBuilds = currentProject.getBuilds();
// updateLastBuild... |
python | def _collapse_fastq(in_fn):
"""
collapse reads into unique sequences
"""
args = argparse.Namespace()
args.fastq = in_fn
args.minimum = 1
args.out = op.dirname(in_fn)
return collapse_fastq(args) |
java | private ProcessingItem createPi(Processor processor, int parallelism) {
ProcessingItem pi = this.componentFactory.createPi(processor, parallelism);
this.topology.addProcessingItem(pi, parallelism);
return pi;
} |
java | public String getHostAndPort()
{
if (enablePlaintextPort) {
if (plaintextPort < 0) {
return HostAndPort.fromString(host).toString();
} else {
return HostAndPort.fromParts(host, plaintextPort).toString();
}
}
return null;
} |
java | @Override
protected String newAlgorithm()
{
if (getModel().getAlgorithm() == null)
{
getModel().setAlgorithm(AesAlgorithm.AES);
}
return getModel().getAlgorithm().getAlgorithm();
} |
java | public void checkAuthentication() throws ConnectionException {
IServices services = new Services(createMetaModel(),
populateHeaders(new V1APIConnector(getApplicationURL() + "rest-1.v1/",
username, password, ApiClientInternals.getProxyProvider(proxySettings))));
Oid logge... |
java | private static void processBiGram() {
//移除二元模型出现频率为1的情况
Iterator<String> iter = BIGRAM.keySet().iterator();
while(iter.hasNext()){
String key = iter.next();
if(BIGRAM.get(key) < 2){
iter.remove();
}
}
try(BufferedWriter writer =... |
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