language stringclasses 2
values | func_code_string stringlengths 63 466k |
|---|---|
java | public static void main(String[] args) throws InvalidKeyException, NoSuchAlgorithmException,
InvalidEndpointException, InvalidPortException, InvalidBucketNameException,
InsufficientDataException, NoResponseException, ErrorResponseException, InternalException,
InvalidArgumentException, IOException, Xml... |
python | def setdefault(self: dict, other: dict):
"""Like .update() but values in self take priority."""
for k, v in other.items():
self.setdefault(k, v) |
java | private void render(SVG.Group obj)
{
debug("Group render");
updateStyleForElement(state, obj);
if (!display())
return;
if (obj.transform != null) {
canvas.concat(obj.transform);
}
checkForClipPath(obj);
boolean compositing = pushLayer()... |
java | public String generateSourceMap() throws IOException {
final String sourceMethod = "generateSourceMap"; //$NON-NLS-1$
final boolean isTraceLogging = log.isLoggable(Level.FINER);
if (isTraceLogging) {
log.entering(sourceClass, sourceMethod, new Object[]{name});
}
String result = null;
lineLengths =... |
python | def get_service_framework_id(
service_name,
inactive=False,
completed=False
):
""" Get the framework ID for a service
:param service_name: the service name
:type service_name: str
:param inactive: whether to include inactive services
:type inactive: bool
... |
java | public int readAll(CharBuffer buf, int length) throws IOException
{
int len = buf.length();
buf.length(len + length);
int readLength = readAll(buf.buffer(), len, length);
if (readLength < 0)
buf.length(len);
else if (readLength < length)
buf.length(len + readLength);
return lengt... |
python | def zlist(columns, items, print_columns=None,
text="", title="", width=DEFAULT_WIDTH,
height=ZLIST_HEIGHT, timeout=None):
"""
Display a list of values
:param columns: a list of columns name
:type columns: list of strings
:param items: a list of values
:type items: list of st... |
java | public void setNAME(Integer newNAME) {
Integer oldNAME = name;
name = newNAME;
if (eNotificationRequired())
eNotify(new ENotificationImpl(this, Notification.SET, AfplibPackage.BEGIN_SEGMENT_COMMAND__NAME, oldNAME, name));
} |
java | @Check
public void checkContainerType(SarlEvent event) {
final XtendTypeDeclaration declaringType = event.getDeclaringType();
if (declaringType != null) {
final String name = canonicalName(declaringType);
assert name != null;
error(MessageFormat.format(Messages.SARLValidator_32, name),
event,
nu... |
python | def match_concept(self,string):
'''Find all matches in this :class:`Bottle` for ``string`` and return the best match'''
matches = self.match_all_concepts(string)
if len(matches)>0:
return matches[0]
return None |
java | public void process(DocumentAndOp doc, Analyzer analyzer) throws IOException {
if (doc.getOp() == DocumentAndOp.Op.DELETE
|| doc.getOp() == DocumentAndOp.Op.UPDATE) {
deleteList.add(doc.getTerm());
}
if (doc.getOp() == DocumentAndOp.Op.INSERT
|| doc.getOp() == DocumentAndOp.O... |
java | public void setSortMode(final SortMode sortMode) {
getOrCreateComponentModel().sortMode = sortMode == null ? SortMode.NONE : sortMode;
} |
python | def update_name(self, force=False, create_term=False, report_unchanged=True):
"""Generate the Root.Name term from DatasetName, Version, Origin, TIme and Space"""
updates = []
self.ensure_identifier()
name_term = self.find_first('Root.Name')
if not name_term:
if cr... |
java | @Override
public boolean fileCreated(File file) throws WatchingException {
if (WatcherUtils.isInDirectory(file, internalSources)) {
processDirectory(internalSources, destinationForInternals);
} else if (WatcherUtils.isInDirectory(file, externalSources)) {
processDirectory(ext... |
java | private <T> InternalProviderImpl installInternalProvider(Class<T> clazz, String bindingName, InternalProviderImpl<? extends T> internalProvider,
boolean isBound, boolean isTestProvider) {
if (bindingName == null) {
if (isBound) {
return installUnNamedProvider(mapClassesToUnNamedBoundProviders, c... |
java | public void removeConstraint(final GVRConstraint gvrConstraint) {
mPhysicsContext.runOnPhysicsThread(new Runnable() {
@Override
public void run() {
if (contains(gvrConstraint)) {
NativePhysics3DWorld.removeConstraint(getNative(), gvrConstraint.getNativ... |
java | public static TranslatableComponent make(final @NonNull String key, final @NonNull List<Component> args, final @NonNull Consumer<Builder> consumer) {
final Builder builder = builder(key).args(args);
consumer.accept(builder);
return builder.build();
} |
python | def get_data(self):
"""
reads data from current WD measurement.txt or magic_measurements.txt
depending on data model and sorts it into main measurements data
structures given bellow:
Data - {specimen: {
zijdblock:[[treatment temp-str,dec-float, inc-float,
... |
python | def merge_tags(left, right, factory=Tags):
"""
Merge two sets of tags into a new troposphere object
Args:
left (Union[dict, troposphere.Tags]): dictionary or Tags object to be
merged with lower priority
right (Union[dict, troposphere.Tags]): dictionary or Tags object to be
... |
java | public static SecretKeyFactory getSecretKeyFactory(String algorithm) {
final Provider provider = GlobalBouncyCastleProvider.INSTANCE.getProvider();
SecretKeyFactory keyFactory;
try {
keyFactory = (null == provider) //
? SecretKeyFactory.getInstance(getMainAlgorithm(algorithm)) //
: SecretKeyF... |
java | public final void parse(final InputStream in, final ContentHandler handler)
throws IOException, ParserException {
parse(new InputStreamReader(in), handler);
} |
java | public ActionForm createActionForm(ActionServlet servlet)
throws IllegalAccessException, InstantiationException {
// Create a new form bean instance
if (getDynamic()) {
return super.createActionForm(servlet);
}
try {
ReloadableClassHandler rch = Handler... |
python | def parse_authentication_request(self, request_body, http_headers=None):
# type: (str, Optional[Mapping[str, str]]) -> oic.oic.message.AuthorizationRequest
"""
Parses and verifies an authentication request.
:param request_body: urlencoded authentication request
:param http_heade... |
python | def reset(self, hard=False):
'''reset the card dispense, either soft or hard based on boolean 2nd arg'''
if hard:
self.sendcommand(Vendapin.RESET, 1, 0x01)
time.sleep(2)
else:
self.sendcommand(Vendapin.RESET)
time.sleep(2)
# parse the r... |
python | def save_form(self, form, request, **resources):
"""Save self form."""
resource = yield from super(PWAdminHandler, self).save_form(form, request, **resources)
resource.save()
return resource |
java | protected final MemorySegment nextSegment(MemorySegment current, int posInSegment) throws IOException
{
if (current != null) {
writeSegment(current, posInSegment, false);
}
final MemorySegment next = this.writer.getNextReturnedBlock();
this.blockCount++;
return next;
} |
java | Object replaceObject(ResourceRefConfigFactory resRefConfigFactory) {
DSConfig config = dsConfig.get();
String filter = config.jndiName == null || config.jndiName.startsWith("java:")
? FilterUtils.createPropertyFilter("config.displayId", config.id)
: Filter... |
java | protected boolean householderPivot(int j)
{
final double u[] = dataQR[j];
// find the largest value in this column
// this is used to normalize the column and mitigate overflow/underflow
final double max = QrHelperFunctions_DDRM.findMax(u, j, numRows - j);
if( max <= singul... |
java | public static String digest(ByteBuffer script) {
try {
MessageDigest md = MessageDigest.getInstance("SHA1");
md.update(script);
return new String(Base16.encode(md.digest(), false));
} catch (NoSuchAlgorithmException e) {
throw new RedisException("JVM does ... |
python | def create_mapping(record, keys):
"""Create a field mapping for use in API updates and creates.
Args:
record (BaseModel): Record that should be mapped.
keys (list[str]): Fields that should be mapped as keys.
Returns:
dict: Dictionary with keys:
... |
java | public static Optional<Path> createTempFilePathAsOpt(Path path) {
debug(log, "createTempFilePathAsOpt", path);
String[] prefixSuffix = JMFiles.getPrefixSuffix(path.toFile());
try {
return Optional
.of(Files.createTempFile(prefixSuffix[0], prefixSuffix[1]))
... |
python | def load(self, skey, sdesc,
sdict=None, loaders=None, merge=False, writeback=False):
'''
Loads a dictionary into current settings
:param skey:
Type of data to load. Is be used to reference the data \
in the files sections within settings
:param sdesc... |
python | def _find_start_time(hdr, s_freq):
"""Find the start time, usually in STC, but if that's not correct, use ERD
Parameters
----------
hdr : dict
header with stc (and stamps) and erd
s_freq : int
sampling frequency
Returns
-------
datetime
either from stc or from e... |
java | private static boolean isCollapsibleValue(Node value, boolean isLValue) {
switch (value.getToken()) {
case GETPROP:
// Do not collapse GETPROPs on arbitrary objects, because
// they may be implemented setter functions, and oftentimes
// setter functions fail on native objects. This is ... |
java | public static String replaceAll(final String input,
final String pattern, final String replacement) {
final StringBuilder result = new StringBuilder();
int startIndex = 0;
int newIndex;
while ((newIndex = input.indexOf(pattern, startIndex)) >= 0) {
result.append(... |
python | def _set_fabric_isl(self, v, load=False):
"""
Setter method for fabric_isl, mapped from YANG variable /interface/fortygigabitethernet/fabric/fabric_isl (container)
If this variable is read-only (config: false) in the
source YANG file, then _set_fabric_isl is considered as a private
method. Backends ... |
java | public void plusNanoSeconds(long delta)
{
if (delta != 0)
{
long result = getNanoSecond() + delta;
setNanoSecond((int) Math.floorMod(result, 1000000000));
plusSeconds(Math.floorDiv(result, 1000000000));
}
} |
java | private void buildMetaZoneNames(MethodSpec.Builder method, TimeZoneData data) {
CodeBlock.Builder code = CodeBlock.builder();
code.beginControlFlow("\nthis.$L = new $T<$T, $T>() {", "metazoneNames",
HASHMAP, STRING, TIMEZONE_NAMES);
for (MetaZoneInfo info : data.metaZoneInfo) {
if (info.... |
java | public ZealotKhala andNotLike(String field, Object value) {
return this.doLike(ZealotConst.AND_PREFIX, field, value, true, false);
} |
java | public void setTextValue(String v) {
if (BodyCitation_Type.featOkTst && ((BodyCitation_Type)jcasType).casFeat_textValue == null)
jcasType.jcas.throwFeatMissing("textValue", "ch.epfl.bbp.uima.types.BodyCitation");
jcasType.ll_cas.ll_setStringValue(addr, ((BodyCitation_Type)jcasType).casFeatCode_textValue, ... |
python | def get_package_by_key(self, package_keyname, mask=None):
"""Get a single package with a given key.
If no packages are found, returns None
:param package_keyname: string representing the package key name we are interested in.
:param string mask: Mask to specify the properties we want t... |
python | def get_resources(cls):
"""Returns Ext Resources."""
plural_mappings = resource_helper.build_plural_mappings(
{}, RESOURCE_ATTRIBUTE_MAP)
if NEUTRON_VERSION.version[0] <= NEUTRON_NEWTON_VERSION.version[0]:
attr.PLURALS.update(plural_mappings)
return resource_helpe... |
python | def system_which(command, mult=False):
"""Emulates the system's which. Returns None if not found."""
_which = "which -a" if not os.name == "nt" else "where"
os.environ = {
vistir.compat.fs_str(k): vistir.compat.fs_str(val)
for k, val in os.environ.items()
}
result = None
try:
... |
python | def utc2et(utcstr):
"""
Convert an input time from Calendar or Julian Date format, UTC,
to ephemeris seconds past J2000.
http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/utc2et_c.html
:param utcstr: Input time string, UTC.
:type utcstr: str
:return: Output epoch, ephemeris seconds ... |
java | protected SchemaInformedGrammar getSchemaInformedElementFragmentGrammar()
throws EXIException {
// unique qname map
Map<QName, List<XSElementDeclaration>> uniqueNamedElements = getUniqueNamedElements();
if (elementFragment0 != null) {
return elementFragment0;
}
// 8.5.3 Schema-informed Elem... |
java | public static DoubleChromosome of(final DoubleGene... genes) {
checkGeneRange(Stream.of(genes).map(DoubleGene::range));
return new DoubleChromosome(ISeq.of(genes), IntRange.of(genes.length));
} |
java | @Deprecated
@Override
public JsonParser createJsonParser(Reader r) throws IOException, JsonParseException {
return createParser(r);
} |
python | def get_absolute(self, points):
"""Given a set of points geo referenced to this instance,
return the points as absolute values.
"""
# remember if we got a list
is_list = isinstance(points, list)
points = ensure_numeric(points, num.float)
if len(points.shape) == ... |
python | def _meanprecision(D, tol=1e-7, maxiter=None):
'''Mean and precision alternating method for MLE of Dirichlet
distribution'''
N, K = D.shape
logp = log(D).mean(axis=0)
a0 = _init_a(D)
s0 = a0.sum()
if s0 < 0:
a0 = a0/s0
s0 = 1
elif s0 == 0:
a0 = ones(a.shape) / len... |
java | public void clearUserValues() {
ArrayList<String> buckets = getBuckets();
for (String bucket : buckets) {
setCreditCount(bucket, 0);
}
setBuckets(new ArrayList<String>());
ArrayList<String> actions = getActions();
for (String action : actions) {
... |
java | public CmsUUID addForbiddenParentFolder(String parentFolder, String reason) {
CmsUUID id = new CmsUUID();
m_forbiddenParentFolders.put(id, new ForbiddenFolderEntry(parentFolder, reason));
return id;
} |
java | public final void xmlRequestWriteRawDataOnSystemOut() throws IOException
{
FormattedWriter writer = new FormattedWriter(new OutputStreamWriter(System.out));
xmlWriteRawOn(writer, false);
writer.flush();
} |
python | def coarsen(self, windows, func, boundary='exact', side='left'):
"""
Apply
"""
windows = {k: v for k, v in windows.items() if k in self.dims}
if not windows:
return self.copy()
reshaped, axes = self._coarsen_reshape(windows, boundary, side)
if isinsta... |
java | public static Label.Builder format(final Label.Builder label) {
for (final MapFieldEntry.Builder entryBuilder : label.getEntryBuilderList()) {
final List<String> valueList = new ArrayList<>(entryBuilder.getValueList());
entryBuilder.clearValue();
for (String value : valueList... |
java | public static void deleteCommerceSubscriptionEntry(
long commerceSubscriptionEntryId)
throws com.liferay.portal.kernel.exception.PortalException {
getService().deleteCommerceSubscriptionEntry(commerceSubscriptionEntryId);
} |
python | def do_GET(self):
# check here request header to identify the type of req, if http or ws
# if this is a ws req, instance a ws handler, add it to App's ws list, return
if "Upgrade" in self.headers:
if self.headers['Upgrade'] == 'websocket':
#passing arguments to websoc... |
python | def _read_ini_config(ini_file_contents: str) -> Dict[str, str]:
"""
Parses the given ini file contents and converts to a dictionary of key/value pairs.
:param ini_file_contents: the contents of the ini file
:return: dictionary where the variable names are key and their values are the values
"""
... |
python | def _prepare_wsdl_objects(self):
"""
Preps the WSDL data structures for the user.
"""
self.DeletionControlType = self.client.factory.create('DeletionControlType')
self.TrackingId = self.client.factory.create('TrackingId')
self.TrackingId.TrackingIdType = self.client.fact... |
java | public static void main(String[] args) {
String icuApiVer;
if (ICU_VERSION.getMajor() <= 4) {
if (ICU_VERSION.getMinor() % 2 != 0) {
// Development mile stone
int major = ICU_VERSION.getMajor();
int minor = ICU_VERSION.getMinor() + 1;
... |
python | def build_taxonomy(self, level, namespace, predicate, value):
"""
:param level: info, safe, suspicious or malicious
:param namespace: Name of analyzer
:param predicate: Name of service
:param value: value
:return: dict
"""
return {
'level':... |
python | def do_random(context, seq):
"""Return a random item from the sequence."""
try:
return random.choice(seq)
except IndexError:
return context.environment.undefined('No random item, sequence was empty.') |
python | def gen_gmfs(gmf_set):
"""
Generate GMF nodes from a gmf_set
:param gmf_set: a sequence of GMF objects with attributes
imt, sa_period, sa_damping, event_id and containing a list
of GMF nodes with attributes gmv and location. The nodes
are sorted by lon/lat.
"""
for gmf in gmf_set:
... |
java | public void createPageControlsPostconfig() {
try {
getMainPageButton("projectFromArchiveRadio").setSelection(true);
getMainPageButton("projectFromArchiveRadio").setEnabled(false);
getMainPageButton("projectFromDirectoryRadio").setSelection(false);
getMainPageButton("projectFromDirectoryRadio").setEnabled(... |
python | def split_str(string):
"""Split string in half to return two strings"""
split = string.split(' ')
return ' '.join(split[:len(split) // 2]), ' '.join(split[len(split) // 2:]) |
python | def call_agent_side(self, method, *args, **kwargs):
'''
Call the method, wrap it in Deferred and bind error handler.
'''
assert not self._finalize_called, ("Attempt to call agent side code "
"after finalize() method has been "
... |
python | def visit_IfExp(self, node):
'''
Resulting node alias to either branch
>>> from pythran import passmanager
>>> pm = passmanager.PassManager('demo')
>>> module = ast.parse('def foo(a, b, c): return a if c else b')
>>> result = pm.gather(Aliases, module)
>>> Aliase... |
java | public DataDescriptor parentDescriptor() {
if (type == TYPE_INVALID) {
return null;
} else if (dataIds != null) {
return new DataDescriptor(dataPath);
} else {
if (dataPath.length == 1)
return null;
String[] myPath = new String[data... |
python | def add_nodes(self, nodes, attr_dict=None, **attr):
"""Adds multiple nodes to the graph, along with any related attributes
of the nodes.
:param nodes: iterable container to either references of the nodes
OR tuples of (node reference, attribute dictionary);
... |
python | def value_get(method_name):
"""
Creates a getter that will call value's method with specified name
using the context's key as first argument.
@param method_name: the name of a method belonging to the value.
@type method_name: str
"""
def value_get(value, context, **_params):
method ... |
java | static <I, O> CipherExecutor<I, O> getInstance() {
if (INSTANCE == null) {
synchronized (NoOpCipherExecutor.class) {
if (INSTANCE == null) {
INSTANCE = new NoOpCipherExecutor<>();
}
}
}
return INSTANCE;
} |
java | public static ApiOvhCore getInstance() {
ApiOvhCore core = new ApiOvhCore();
// core._consumerKey = core.config.getConsumerKey();
core._consumerKey = core.getConsumerKeyOrNull();// config.getConsumerKey();
if (core._consumerKey == null) {
File file = ApiOvhConfigBasic.getOvhConfig();
String location = Api... |
python | def influx_query_(self, q):
"""
Runs an Influx db query
"""
if self.influx_cli is None:
self.err(
self.influx_query_,
"No database connected. Please initialize a connection")
return
try:
return self.influx_cli.qu... |
java | @VisibleForTesting
static void propagateMetadataFromProps(Map<String, String> metaData, Props inputProps, String nodeType,
String nodeName, Logger logger) {
// Backward compatibility: Unless user specifies, this will be absent from flows and jobs
// .. if so, do a no-op like before
if (!inputProps.... |
java | public static Optional<OffsetRange<CharOffset>> charOffsetsOfWholeString(String s) {
if (s.isEmpty()) {
return Optional.absent();
}
return Optional.of(charOffsetRange(0, s.length() - 1));
} |
java | private NodeStruct nodesWithDataTakeUnsafe() {
LOG.entering("OperatorTopologyStructImpl", "nodesWithDataTakeUnsafe");
try {
final NodeStruct child = nodesWithData.take();
LOG.exiting("OperatorTopologyStructImpl", "nodesWithDataTakeUnsafe", child);
return child;
} catch (final InterruptedE... |
python | def show_pricing(kwargs=None, call=None):
'''
Show pricing for a particular profile. This is only an estimate, based on
unofficial pricing sources.
.. versionadded:: 2015.8.0
CLI Examples:
.. code-block:: bash
salt-cloud -f show_pricing my-digitalocean-config profile=my-profile
'... |
java | @Override
public void deleteUser(String username) throws AuthenticationException {
String user = file_store.getProperty(username);
if (user == null) {
throw new AuthenticationException("User '" + username
+ "' not found.");
}
file_store.remove(username... |
java | public static List<ConnectionParams> manyFromConfig(ConfigParams config, boolean configAsDefault) {
List<ConnectionParams> result = new ArrayList<ConnectionParams>();
// Try to get multiple connections first
ConfigParams connections = config.getSection("connections");
if (connections.size() > 0) {
List<Str... |
python | def creates_cycle(connections, test):
"""
Returns true if the addition of the 'test' connection would create a cycle,
assuming that no cycle already exists in the graph represented by 'connections'.
"""
i, o = test
if i == o:
return True
visited = {o}
while True:
num_add... |
python | def remove_listener(self, registration_id):
"""
Removes the specified membership listener.
:param registration_id: (str), registration id of the listener to be deleted.
:return: (bool), if the registration is removed, ``false`` otherwise.
"""
try:
self.listen... |
python | def create(self, name, plan, zone,
service_type='mongodb', instance_type='mongodb_sharded', version='2.4.6'):
"""Create an ObjectRocket instance.
:param str name: The name to give to the new instance.
:param int plan: The plan size of the new instance.
:param str zone: Th... |
java | public static RouteMeta build(RouteType type, Class<?> destination, String path, String group, int priority, int extra) {
return new RouteMeta(type, null, destination, null, path, group, null, priority, extra);
} |
java | public static Builder from(URI swaggerUri) {
Validate.notNull(swaggerUri, "swaggerUri must not be null");
String scheme = swaggerUri.getScheme();
if (scheme != null && swaggerUri.getScheme().startsWith("http")) {
try {
return from(swaggerUri.toURL());
} ca... |
python | def tile_images(img1, img2, mask1, mask2, opts):
"""Combine two images into one by tiling them.
``mask1`` and ``mask2`` provide optional masks for alpha-blending;
pass None to avoid.
Fills unused areas with ``opts.bgcolor``.
Puts a ``opts.spacing``-wide bar with a thin line of ``opts.sepcolor``
... |
java | @Override
public void afterCompletion(HttpServletRequest request,
HttpServletResponse response,
Object handler,
Exception ex) {
lepManager.endThreadContext();
} |
python | def server_to_dict(server):
"""
Returns the :class:`dict` representation of a server object.
The returned :class:`dict` is meant to be consumed by
:class:`~bang.deployers.cloud.ServerDeployer` objects.
"""
return {
A.server.ID: server.id,
A.server.PUBLIC_IPS: [server.pu... |
python | def _remove_column(self, name):
"""
Removes a column from the blueprint.
:param name: The column name
:type name: str
:rtype: Blueprint
"""
self._columns = filter(lambda c: c.name != name, self._columns)
return self |
java | public boolean bind ()
{
// open our TCP listening ports
int successes = 0;
for (int port : _ports) {
try {
acceptConnections(port);
successes++;
} catch (IOException ioe) {
log.warning("Failure listening to socket", "ho... |
java | @Override
public AuthenticationInfo beforeAllAttempts(Collection<? extends Realm> realms, AuthenticationToken token) throws AuthenticationException {
final SimpleAuthenticationInfo authenticationInfo = (SimpleAuthenticationInfo) super.beforeAllAttempts(realms, token);
authenticationInfo.setPrincipa... |
java | void apMessage(AnnotationProcessingError ex) {
log.printLines(PrefixKind.JAVAC, "msg.proc.annotation.uncaught.exception");
ex.getCause().printStackTrace(log.getWriter(WriterKind.NOTICE));
} |
java | public Collection<ScmConfiguration> parseRepositoriesFile(String fileName, String scmType, String scmPpk, String scmUser, String scmPassword) {
try (InputStream is = new FileInputStream(fileName)) {
String jsonText = IOUtils.toString(is);
JSONObject json = new JSONObject(jsonText);
... |
python | async def reset(self):
""" reset the tournament on Challonge
|methcoro|
Note:
|from_api| Reset a tournament, clearing all of its scores and attachments. You can then add/remove/edit participants before starting the tournament again.
Raises:
APIException
... |
python | def list_roles():
""" List existing roles """
click.echo(green('\nListing roles:'))
click.echo(green('-' * 40))
with get_app().app_context():
roles = Role.query.all()
if not roles:
click.echo(red('No roles found'))
return
for index,role in enumerate(roles... |
python | def save_data(self, trigger_id, **data):
"""
let's save the data
:param trigger_id: trigger ID from which to save data
:param data: the data to check to be used and save
:type trigger_id: int
:type data: dict
:return: the status of the sav... |
python | def analyze_insertions(fa, threads = 6):
"""
- find ORFs using Prodigal
- find introns using cmscan (vs Rfam intron database)
- check that ORFs and intron overlap with insertion region
- plot insertion length versus model position for each insertion (based on insertion type)
"""
safe, sequen... |
python | def lookup_asset_types(self, sids):
"""
Retrieve asset types for a list of sids.
Parameters
----------
sids : list[int]
Returns
-------
types : dict[sid -> str or None]
Asset types for the provided sids.
"""
found = {}
... |
python | def remove(property_name, system=False):
"""
Remove a configuration property/value setting from the config file.
:param property_name: The name of the property to remove.
:keyword system: Set to True to modify the system configuration file.
If not set, the user config file will be ... |
python | def txt(self, txt, h=None, at_x=None, to_x=None, change_style=None, change_size=None):
"""print string to defined (at_x) position
to_x can apply only if at_x is None and if used then forces align='R'
"""
h = h or self.height
self._change_props(change_style, change_size)
a... |
java | @Override
public Set<String> convert(String value) {
//shouldn't ever get called but if it does, the best we can do is return a String set
List<String> list = Arrays.asList(ConversionManager.split(value));
Set<String> set = new HashSet<>(list);
return set;
} |
python | def grouper(iterable, n):
"""
Slice up `iterable` into iterables of `n` items.
:param iterable: Iterable to splice.
:param n: Number of items per slice.
:returns: iterable of iterables
"""
it = iter(iterable)
while True:
chunk = itertools.islice(it, n)
try:
f... |
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