This dataset integrates Gene Ontology (GO) annotations (filtered to experimental evidence IDA) with bibliographic data from Europe PMC. Each record links a biological entity (gene/protein) to a GO term and the supporting scientific publication.
Columns:
DB, DB_Object_ID, DB_Object_Symbol: source database and gene/protein identifiers
Qualifier: relationship qualifier (e.g., “NOT”, “contributes_to”)
GO_ID, GO_Name: GO term and its descriptive name
DB_Reference: supporting reference (PubMed or other)
Evidence_Code: experimental evidence type (e.g., IDA)
Aspect: ontology branch (P = process, F = function, C = component)
DB_Object_Name, DB_Object_Synonym, DB_Object_Type: entity metadata
Taxon: organism taxonomy ID
Date, Assigned_By, Annotation_Extension: annotation metadata
PMID: PubMed ID for the supporting publication
Title, Abstract: publication title and abstract text (fetched from Europe PMC)
This forms a structured link between curated GO annotations and natural language descriptio…
