assembly_accession
string
bioproject
string
biosample
string
wgs_master
string
refseq_category
string
taxid
int64
species_taxid
int64
organism_name
string
infraspecific_name
string
isolate
string
version_status
string
assembly_level
string
release_type
string
genome_rep
string
seq_rel_date
string
asm_name
string
asm_submitter
string
gbrs_paired_asm
string
paired_asm_comp
string
ftp_path
string
excluded_from_refseq
string
relation_to_type_material
string
asm_not_live_date
string
assembly_type
string
group
string
genome_size
int64
genome_size_ungapped
int64
gc_percent
float64
replicon_count
int64
scaffold_count
int64
contig_count
int64
annotation_provider
string
annotation_name
string
annotation_date
string
total_gene_count
int64
protein_coding_gene_count
int64
non_coding_gene_count
int64
pubmed_id
string
GCF_000011725.1
PRJNA224116
SAMN02603300
na
na
290,847
210
Helicobacter pylori 51
strain=51
na
latest
Complete Genome
Major
Full
2012-05-16
ASM1172v1
Gyeongsang National University College of Medicine and 21c Frontier Human Functional Genome Research Project
GCA_000011725.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/725/GCF_000011725.1_ASM1172v1/
na
na
na
haploid
bacteria
1,589,954
1,589,954
39
1
1
1
NCBI RefSeq
GCF_000011725.1-RS_2025_01_10
2025-01-10
1,544
1,408
45
na
GCF_000011745.1
PRJNA224116
SAMN02603465
na
reference genome
291,272
101,534
Candidatus Blochmanniella pennsylvanica str. BPEN
strain=BPEN
na
latest
Complete Genome
Major
Full
2005-08-06
ASM1174v1
Josephine Bay Paul Center
GCA_000011745.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/745/GCF_000011745.1_ASM1174v1/
na
na
na
haploid
bacteria
791,654
791,654
29.5
1
1
1
NCBI RefSeq
GCF_000011745.1-RS_2025_03_17
2025-03-17
663
607
45
16077009
GCF_000011765.3
PRJNA224116
SAMN02603500
na
na
293,653
1,314
Streptococcus pyogenes MGAS5005
strain=MGAS5005
na
latest
Complete Genome
Minor
Full
2014-04-01
ASM1176v2
Lab of Human Bacterial Pathogenesis
GCA_000011765.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/765/GCF_000011765.3_ASM1176v2/
na
na
na
haploid
bacteria
1,838,562
1,838,562
38.5
1
1
1
NCBI RefSeq
GCF_000011765.3-RS_2026_03_28
2026-03-28
1,852
1,702
89
16088826;24733896
GCF_000011805.1
PRJNA224116
SAMN02604303
na
reference genome
312,309
668
Aliivibrio fischeri ES114
strain=ES114
na
latest
Complete Genome
Major
Full
2008-04-04
ASM1180v1
W.M. Keck Microbial Communities and Cell-signaling Program
GCA_000011805.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/805/GCF_000011805.1_ASM1180v1/
na
na
na
haploid
bacteria
4,273,718
4,273,718
38.5
3
3
3
NCBI RefSeq
GCF_000011805.1-RS_2025_03_27
2025-03-27
3,953
3,748
160
15703294;18366731
GCF_000011825.1
PRJNA224116
SAMN02604079
na
na
264,199
1,308
Streptococcus thermophilus LMG 18311
strain=LMG 18311
na
latest
Complete Genome
Major
Full
2004-11-18
ASM1182v1
Univ. Catholique de Louvain, Belgium
GCA_000011825.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/825/GCF_000011825.1_ASM1182v1/
na
na
na
haploid
bacteria
1,796,846
1,796,846
39
1
1
1
NCBI RefSeq
GCF_000011825.1-RS_2025_03_27
2025-03-27
1,866
1,540
89
15543133
GCF_000011845.1
PRJNA224116
SAMN02603344
na
na
299,768
1,308
Streptococcus thermophilus CNRZ1066
strain=CNRZ1066
na
latest
Complete Genome
Major
Full
2004-11-18
ASM1184v1
Institut National de la Recherche Agronomique, France
GCA_000011845.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/845/GCF_000011845.1_ASM1184v1/
na
na
na
haploid
bacteria
1,796,226
1,796,226
39
1
1
1
NCBI RefSeq
GCF_000011845.1-RS_2025_03_27
2025-03-27
1,885
1,554
89
15543133
GCF_000011865.1
PRJNA224116
SAMN02604007
na
na
195,099
197
Campylobacter jejuni RM1221
strain=RM1221
na
latest
Complete Genome
Major
Full
2005-01-07
ASM1186v1
TIGR
GCA_000011865.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/865/GCF_000011865.1_ASM1186v1/
na
na
na
haploid
bacteria
1,777,831
1,777,831
30.5
1
1
1
NCBI RefSeq
GCF_000011865.1-RS_2025_05_22
2025-05-22
1,891
1,766
56
15660156
GCF_000011885.1
PRJNA224116
SAMN02604316
na
na
295,319
28,901
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
strain=ATCC 9150
na
latest
Complete Genome
Major
Full
2004-12-08
ASM1188v1
Washington University Genome Sequencing Center
GCA_000011885.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/885/GCF_000011885.1_ASM1188v1/
na
na
na
haploid
bacteria
4,585,229
4,585,229
52
1
1
1
NCBI RefSeq
GCF_000011885.1-RS_2025_02_20
2025-02-20
4,488
4,116
117
15531882
GCF_000011905.1
PRJNA224116
SAMN02603990
na
reference genome
243,164
61,435
Dehalococcoides mccartyi 195
strain=195
na
latest
Complete Genome
Major
Full
2005-01-07
ASM1190v1
TIGR
GCA_000011905.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/905/GCF_000011905.1_ASM1190v1/
na
assembly from type material
na
haploid
bacteria
1,469,720
1,469,720
49
1
1
1
NCBI RefSeq
GCF_000011905.1-RS_2024_12_09
2024-12-09
1,579
1,510
51
15637277
GCF_000011925.1
PRJNA224116
SAMN02603975
na
na
176,279
1,282
Staphylococcus epidermidis RP62A
strain=RP62A
na
latest
Complete Genome
Major
Full
2005-01-18
ASM1192v1
TIGR
GCA_000011925.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/925/GCF_000011925.1_ASM1192v1/
na
na
na
haploid
bacteria
2,643,840
2,643,840
32
2
2
2
NCBI RefSeq
GCF_000011925.1-RS_2025_04_15
2025-04-15
2,538
2,382
84
15774886
GCF_000011945.1
PRJNA224116
SAMN02604305
na
na
234,826
770
Anaplasma marginale str. St. Maries
strain=St. Maries
na
latest
Complete Genome
Major
Full
2004-12-08
ASM1194v1
Washington State University
GCA_000011945.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/945/GCF_000011945.1_ASM1194v1/
na
na
na
haploid
bacteria
1,197,687
1,197,687
50
1
1
1
NCBI RefSeq
GCF_000011945.1-RS_2025_01_08
2025-01-08
1,010
942
44
15618402
GCF_000011965.2
PRJNA224116
SAMN02604003
na
reference genome
246,200
89,184
Ruegeria pomeroyi DSS-3
strain=DSS-3
na
latest
Complete Genome
Major
Full
2013-12-11
ASM1196v2
TIGR
GCA_000011965.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/965/GCF_000011965.2_ASM1196v2/
na
assembly from type material
na
haploid
bacteria
4,601,048
4,601,048
64
2
2
2
NCBI RefSeq
GCF_000011965.2-RS_2025_04_07
2025-04-07
4,480
4,368
64
15602564;17526795;25780504
GCF_000011985.1
PRJNA224116
SAMN02603047
na
na
272,621
1,579
Lactobacillus acidophilus NCFM
strain=NCFM
na
latest
Complete Genome
Major
Full
2007-11-07
ASM1198v1
Cal Poly. San Luis Obispo
GCA_000011985.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/985/GCF_000011985.1_ASM1198v1/
na
na
na
haploid
bacteria
1,993,560
1,993,560
34.5
1
1
1
NCBI RefSeq
GCF_000011985.1-RS_2025_03_27
2025-03-27
1,933
1,771
76
15671160
GCF_000012005.1
PRJNA224116
SAMN02603600
na
na
300,267
622
Shigella dysenteriae Sd197
strain=Sd197
na
latest
Complete Genome
Major
Full
2005-11-30
ASM1200v1
Microbial Genome Center of ChMPH
GCA_000012005.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/005/GCF_000012005.1_ASM1200v1/
na
na
na
haploid
bacteria
4,560,911
4,560,911
51
3
3
3
NCBI RefSeq
GCF_000012005.1-RS_2025_03_27
2025-03-27
4,880
3,643
113
16275786
GCF_000012025.1
PRJNA224116
SAMN02603601
na
na
300,268
621
Shigella boydii Sb227
strain=Sb227
na
latest
Complete Genome
Major
Full
2005-11-18
ASM1202v1
Microbial Genome Center of ChMPH
GCA_000012025.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/025/GCF_000012025.1_ASM1202v1/
na
na
na
haploid
bacteria
4,646,520
4,646,520
51
2
2
2
NCBI RefSeq
GCF_000012025.1-RS_2025_03_27
2025-03-27
4,795
3,899
121
16275786
GCF_000012045.1
PRJNA224116
SAMN02603996
na
na
93,062
1,280
Staphylococcus aureus subsp. aureus COL
strain=COL
na
latest
Complete Genome
Major
Full
2005-01-13
ASM1204v1
TIGR
GCA_000012045.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/045/GCF_000012045.1_ASM1204v1/
na
na
na
haploid
bacteria
2,813,862
2,813,862
33
2
2
2
NCBI RefSeq
GCF_000012045.1-RS_2025_04_26
2025-04-26
2,796
2,649
75
15774886
GCF_000012065.2
PRJNA224116
SAMN02641559
na
na
314,723
140
Borrelia hermsii DAH
strain=DAH
na
latest
Chromosome
Major
Full
2012-05-10
ASM1206v2
Rocky Mountain Laboratories, NIAID, NIH
GCA_000012065.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/065/GCF_000012065.2_ASM1206v2/
na
assembly from type material
na
haploid
bacteria
1,066,225
1,066,225
30
3
11
11
NCBI RefSeq
GCF_000012065.2-RS_2026_04_04
2026-04-04
1,041
937
38
na
GCF_000012085.2
PRJNA224116
SAMN02603508
na
reference genome
314,724
142
Borrelia turicatae 91E135
strain=91E135
Oz1
latest
Complete Genome
Major
Full
2006-12-27
ASM1208v2
Laboratory of Human Bacterial Pathenogenesis, Rocky Mountain Laboratories, NIAID
GCA_000012085.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/085/GCF_000012085.2_ASM1208v2/
na
assembly designated as reftype
na
haploid
bacteria
1,165,365
1,165,365
29.5
9
9
9
NCBI RefSeq
GCF_000012085.2-RS_2025_03_05
2025-03-05
1,142
1,058
38
8294872;9234797;10594835;16081922
GCF_000012105.1
PRJNA224116
SAMN02603125
na
na
314,565
339
Xanthomonas campestris pv. campestris str. 8004
strain=8004
na
latest
Complete Genome
Major
Full
2005-05-27
ASM1210v1
Chinese National HGC, Shanghai
GCA_000012105.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/105/GCF_000012105.1_ASM1210v1/
na
na
na
haploid
bacteria
5,148,708
5,148,708
65
1
1
1
NCBI RefSeq
GCF_000012105.1-RS_2025_05_07
2025-05-07
4,480
4,166
153
15899963
GCF_000012125.1
PRJNA224116
SAMN02603498
na
na
315,277
813
Chlamydia trachomatis A/HAR-13
strain=A/HAR-13
na
latest
Complete Genome
Major
Full
2005-10-03
ASM1212v1
Lab of Human Bacterial Pathogenesis
GCA_000012125.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/125/GCF_000012125.1_ASM1212v1/
na
assembly from type material
na
haploid
bacteria
1,051,969
1,051,969
41.5
2
2
2
NCBI RefSeq
GCF_000012125.1-RS_2024_09_18
2024-09-18
960
888
46
16177312
GCF_000012165.2
PRJNA224116
SAMN02603499
na
na
319,701
1,314
Streptococcus pyogenes MGAS6180
strain=MGAS6180
na
latest
Complete Genome
Major
Full
2019-05-20
ASM1216v2
Lab of Human Bacterial Pathogenesis
GCA_000012165.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/165/GCF_000012165.2_ASM1216v2/
na
na
na
haploid
bacteria
1,897,578
1,897,578
38.5
1
1
1
NCBI RefSeq
GCF_000012165.2-RS_2024_12_11
2024-12-11
1,913
1,764
89
16088825
GCF_000012185.1
PRJNA224116
SAMN02603157
na
na
281,310
727
Haemophilus influenzae 86-028NP
strain=86-028NP
na
latest
Complete Genome
Major
Full
2007-12-18
ASM1218v1
Columbus Children's Research Institute and The Ohio State University, Pediatrics, USA
GCA_000012185.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/185/GCF_000012185.1_ASM1218v1/
na
na
na
haploid
bacteria
1,914,490
1,914,490
38
1
1
1
NCBI RefSeq
GCF_000012185.1-RS_2025_03_03
2025-03-03
1,922
1,785
81
15968074
GCF_000012205.1
PRJNA224116
SAMN02603162
na
na
264,730
29,438
Pseudomonas savastanoi pv. phaseolicola 1448A
strain=1448A; BAA-978
na
latest
Complete Genome
Major
Full
2005-08-03
ASM1220v1
Cornell University
GCA_000012205.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/205/GCF_000012205.1_ASM1220v1/
na
na
na
haploid
bacteria
6,112,448
6,112,448
58
3
3
3
NCBI RefSeq
GCF_000012205.1-RS_2025_03_15
2025-03-15
5,597
5,089
83
16159782
GCF_000012225.1
PRJNA224116
SAMN02603687
na
na
322,098
229,545
Aster yellows witches'-broom phytoplasma AYWB
strain=AYWB
na
latest
Complete Genome
Major
Full
2006-01-18
ASM1222v1
Ohio State University
GCA_000012225.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/225/GCF_000012225.1_ASM1222v1/
na
na
na
haploid
bacteria
723,970
723,970
27
5
5
5
NCBI RefSeq
GCF_000012225.1-RS_2025_04_26
2025-04-26
709
603
41
16672622
GCF_000012245.1
PRJNA224116
SAMN02604347
na
na
205,918
317
Pseudomonas syringae pv. syringae B728a
strain=B728a
na
latest
Complete Genome
Major
Full
2005-05-17
ASM1224v1
DOE Joint Genome Institute
GCA_000012245.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/245/GCF_000012245.1_ASM1224v1/
na
na
na
haploid
bacteria
6,093,698
6,093,698
59
1
1
1
NCBI RefSeq
GCF_000012245.1-RS_2025_04_15
2025-04-15
5,303
5,087
84
16043691
GCF_000012265.1
PRJNA224116
SAMN02604012
na
na
220,664
380,021
Pseudomonas protegens Pf-5
strain=Pf-5
na
latest
Complete Genome
Major
Full
2005-07-12
ASM1226v1
TIGR
GCA_000012265.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/265/GCF_000012265.1_ASM1226v1/
na
na
na
haploid
bacteria
7,074,893
7,074,893
63.5
1
1
1
NCBI RefSeq
GCF_000012265.1-RS_2025_03_27
2025-03-27
6,442
6,264
90
15980861
GCF_000012285.1
PRJNA224116
SAMN02603173
na
reference genome
330,779
2,285
Sulfolobus acidocaldarius DSM 639
strain=DSM 639
na
latest
Complete Genome
Major
Full
2005-07-08
ASM1228v1
Danish Archaea Centre
GCA_000012285.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/285/GCF_000012285.1_ASM1228v1/
na
assembly from type material
na
haploid
archaea
2,225,959
2,225,959
36.5
1
1
1
NCBI RefSeq
GCF_000012285.1-RS_2025_03_29
2025-03-29
2,370
2,290
51
15995215
GCF_000012305.1
PRJNA224116
SAMN02598544
na
reference genome
259,536
334,543
Psychrobacter arcticus 273-4
strain=273-4
na
latest
Complete Genome
Major
Full
2005-07-22
ASM1230v1
DOE Joint Genome Institute
GCA_000012305.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/305/GCF_000012305.1_ASM1230v1/
na
assembly from type material
na
haploid
bacteria
2,650,701
2,650,701
43
1
1
1
NCBI RefSeq
GCF_000012305.1-RS_2024_11_26
2024-11-26
2,265
2,148
64
20154119
GCF_000012325.1
PRJNA224116
SAMN02604001
na
reference genome
167,879
28,229
Colwellia psychrerythraea 34H
strain=34H; BAA-681
na
latest
Complete Genome
Major
Full
2005-07-27
ASM1232v1
TIGR
GCA_000012325.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/325/GCF_000012325.1_ASM1232v1/
na
na
na
haploid
bacteria
5,373,180
5,373,180
38
1
1
1
NCBI RefSeq
GCF_000012325.1-RS_2025_03_27
2025-03-27
4,584
4,425
120
16043709
GCF_000012345.1
PRJNA224116
SAMN02603690
na
reference genome
335,992
198,252
Candidatus Pelagibacter ubique HTCC1062
strain=HTCC1062
na
latest
Complete Genome
Major
Full
2005-07-25
ASM1234v1
Oregon State University
GCA_000012345.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/345/GCF_000012345.1_ASM1234v1/
na
assembly from type material
na
haploid
bacteria
1,308,759
1,308,759
29.5
1
1
1
NCBI RefSeq
GCF_000012345.1-RS_2025_06_01
2025-06-01
1,382
1,344
36
16109880;16267553
GCF_000012365.1
PRJNA224116
SAMN02604021
na
reference genome
271,848
57,975
Burkholderia thailandensis E264
strain=E264; ATCC 700388
na
latest
Complete Genome
Major
Full
2005-12-17
ASM1236v1
TIGR
GCA_000012365.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/365/GCF_000012365.1_ASM1236v1/
na
assembly from type material
na
haploid
bacteria
6,723,972
6,723,972
67.5
2
2
2
NCBI RefSeq
GCF_000012365.1-RS_2024_12_09
2024-12-09
5,916
5,662
76
16336651
GCF_000012385.1
PRJNA224116
SAMN02603144
na
reference genome
336,407
33,990
Rickettsia bellii RML369-C
strain=RML369-C
na
latest
Complete Genome
Major
Full
2006-04-07
ASM1238v1
CNRS
GCA_000012385.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/385/GCF_000012385.1_ASM1238v1/
na
assembly from type material
na
haploid
bacteria
1,522,076
1,522,076
31.5
1
1
1
NCBI RefSeq
GCF_000012385.1-RS_2025_01_08
2025-01-08
1,539
1,426
40
16703114
GCF_000012405.1
PRJNA224116
SAMN02598543
na
reference genome
269,800
2,021
Thermobifida fusca YX
strain=YX
na
latest
Complete Genome
Major
Full
2005-08-10
ASM1240v1
DOE Joint Genome Institute
GCA_000012405.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/405/GCF_000012405.1_ASM1240v1/
na
na
na
haploid
bacteria
3,642,249
3,642,249
67.5
1
1
1
NCBI RefSeq
GCF_000012405.1-RS_2024_10_21
2024-10-21
3,167
3,083
67
17209016
GCF_000012445.1
PRJNA224116
SAMN02598267
na
na
205,922
294
Pseudomonas fluorescens Pf0-1
strain=Pf0-1
na
latest
Complete Genome
Major
Full
2009-08-14
ASM1244v1
DOE Joint Genome Institute
GCA_000012445.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/445/GCF_000012445.1_ASM1244v1/
na
na
na
haploid
bacteria
6,438,405
6,438,405
60.5
1
1
1
NCBI RefSeq
GCF_000012445.1-RS_2025_04_26
2025-04-26
5,887
5,716
96
19432983
GCF_000012465.1
PRJNA224116
SAMN00623057
na
na
59,920
1,219
Prochlorococcus marinus str. NATL2A
strain=NATL2A
na
latest
Complete Genome
Major
Full
2007-12-18
ASM1246v1
DOE Joint Genome Institute
GCA_000012465.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/465/GCF_000012465.1_ASM1246v1/
na
na
na
haploid
bacteria
1,842,899
1,842,899
35
1
1
1
NCBI RefSeq
GCF_000012465.1-RS_2025_05_23
2025-05-23
2,108
2,058
45
18159947
GCF_000012485.1
PRJNA224116
SAMN02598284
na
reference genome
319,225
1,100
Pelodictyon luteolum DSM 273
strain=DSM 273
na
latest
Complete Genome
Major
Full
2005-10-27
ASM1248v1
DOE Joint Genome Institute
GCA_000012485.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/485/GCF_000012485.1_ASM1248v1/
na
assembly from type material
na
haploid
bacteria
2,364,842
2,364,842
57.5
1
1
1
NCBI RefSeq
GCF_000012485.1-RS_2025_03_28
2025-03-28
2,231
2,144
57
na
GCF_000012505.1
PRJNA224116
SAMN02598312
na
na
316,279
316,279
Synechococcus sp. CC9902
strain=CC9902
na
latest
Complete Genome
Major
Full
2005-10-27
ASM1250v1
DOE Joint Genome Institute
GCA_000012505.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/505/GCF_000012505.1_ASM1250v1/
na
na
na
haploid
bacteria
2,234,828
2,234,828
54
1
1
1
NCBI RefSeq
GCF_000012505.1-RS_2024_08_13
2024-08-13
2,445
2,383
53
na
GCF_000012525.1
PRJNA224116
SAMN02598254
na
na
1,140
32,046
Synechococcus elongatus PCC 7942 = FACHB-805
strain=PCC 7942
na
latest
Complete Genome
Major
Full
2005-11-10
ASM1252v1
DOE Joint Genome Institute
GCA_000012525.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/525/GCF_000012525.1_ASM1252v1/
na
na
na
haploid
bacteria
2,742,269
2,742,269
55.5
2
2
2
NCBI RefSeq
GCF_000012525.1-RS_2025_04_10
2025-04-10
2,775
2,711
55
na
GCF_000012545.1
PRJNA224116
SAMN02604180
na
reference genome
339,860
2,317
Methanosphaera stadtmanae DSM 3091
strain=DSM 3091
na
latest
Complete Genome
Major
Full
2006-01-06
ASM1254v1
University of Goettingen
GCA_000012545.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/545/GCF_000012545.1_ASM1254v1/
na
assembly from type material
na
haploid
archaea
1,767,403
1,767,403
27.5
1
1
1
NCBI RefSeq
GCF_000012545.1-RS_2024_10_21
2024-10-21
1,614
1,553
55
16385054
GCF_000012565.1
PRJNA224116
SAMN02598261
na
reference genome
269,484
944
Ehrlichia canis str. Jake
strain=Jake
na
latest
Complete Genome
Major
Full
2005-08-22
ASM1256v1
DOE Joint Genome Institute
GCA_000012565.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/565/GCF_000012565.1_ASM1256v1/
na
na
na
haploid
bacteria
1,315,030
1,315,030
29
1
1
1
NCBI RefSeq
GCF_000012565.1-RS_2025_01_08
2025-01-08
993
941
42
na
GCF_000012625.1
PRJNA224116
SAMN02598311
na
na
110,662
110,662
Synechococcus sp. CC9605
strain=CC9605
na
latest
Complete Genome
Major
Full
2005-10-28
ASM1262v1
DOE Joint Genome Institute
GCA_000012625.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/625/GCF_000012625.1_ASM1262v1/
na
na
na
haploid
bacteria
2,510,659
2,510,659
59
1
1
1
NCBI RefSeq
GCF_000012625.1-RS_2024_09_15
2024-09-15
2,847
2,773
55
na
GCF_000012645.1
PRJNA224116
SAMN02598321
na
na
74,546
1,219
Prochlorococcus marinus str. MIT 9312
strain=MIT 9312
na
latest
Complete Genome
Major
Full
2005-11-03
ASM1264v1
DOE Joint Genome Institute
GCA_000012645.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/645/GCF_000012645.1_ASM1264v1/
na
na
na
haploid
bacteria
1,709,204
1,709,204
31
1
1
1
NCBI RefSeq
GCF_000012645.1-RS_2025_01_27
2025-01-27
1,921
1,876
44
na
GCF_000012665.1
PRJNA224116
SAMN02598492
na
reference genome
207,559
58,180
Oleidesulfovibrio alaskensis G20
strain=G20
na
latest
Complete Genome
Major
Full
2005-10-31
ASM1266v1
DOE Joint Genome Institute
GCA_000012665.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/665/GCF_000012665.1_ASM1266v1/
na
na
na
haploid
bacteria
3,730,232
3,730,232
58
1
1
1
NCBI RefSeq
GCF_000012665.1-RS_2025_03_28
2025-03-28
3,381
3,266
83
21685289
GCF_000012685.1
PRJNA224116
SAMN02604018
na
reference genome
246,197
34
Myxococcus xanthus DK 1622
strain=DK 1622
na
latest
Complete Genome
Major
Full
2006-06-09
ASM1268v1
TIGR
GCA_000012685.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/685/GCF_000012685.1_ASM1268v1/
na
na
na
haploid
bacteria
9,139,763
9,139,763
69
1
1
1
NCBI RefSeq
GCF_000012685.1-RS_2024_08_06
2024-08-06
7,388
7,234
82
17015832
GCF_000012705.1
PRJNA224116
SAMN02604011
na
na
205,921
1,311
Streptococcus agalactiae A909
strain=A909
na
latest
Complete Genome
Major
Full
2005-10-03
ASM1270v1
TIGR
GCA_000012705.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/705/GCF_000012705.1_ASM1270v1/
na
na
na
haploid
bacteria
2,127,839
2,127,839
35.5
1
1
1
NCBI RefSeq
GCF_000012705.1-RS_2025_03_27
2025-03-27
2,177
2,003
104
16172379
GCF_000012725.1
PRJNA224116
SAMN02598308
na
reference genome
323,098
913
Nitrobacter winogradskyi Nb-255
strain=Nb-255
na
latest
Complete Genome
Major
Full
2005-09-15
ASM1272v1
DOE Joint Genome Institute
GCA_000012725.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/725/GCF_000012725.1_ASM1272v1/
na
assembly from type material
na
haploid
bacteria
3,402,093
3,402,093
62
1
1
1
NCBI RefSeq
GCF_000012725.1-RS_2025_05_26
2025-05-26
3,202
3,050
56
16517654
GCF_000012745.1
PRJNA224116
SAMN02598291
na
na
292,415
36,861
Thiobacillus denitrificans ATCC 25259
strain=ATCC 25259
na
latest
Complete Genome
Major
Full
2005-09-09
ASM1274v1
DOE Joint Genome Institute
GCA_000012745.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/745/GCF_000012745.1_ASM1274v1/
na
na
na
haploid
bacteria
2,909,809
2,909,809
66
1
1
1
NCBI RefSeq
GCF_000012745.1-RS_2025_04_26
2025-04-26
2,895
2,829
54
16452431
GCF_000012765.1
PRJNA224116
SAMN02603434
na
reference genome
340,047
2,095
Mycoplasma capricolum subsp. capricolum ATCC 27343
strain=ATCC 27343
na
latest
Complete Genome
Major
Full
2005-12-08
ASM1276v1
J. Craig Venter Institute
GCA_000012765.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/765/GCF_000012765.1_ASM1276v1/
na
assembly from type material
na
haploid
bacteria
1,010,023
1,010,023
24
1
1
1
NCBI RefSeq
GCF_000012765.1-RS_2024_12_13
2024-12-13
879
827
39
na
GCF_000012785.1
PRJNA224116
SAMN02604036
na
na
320,372
28,450
Burkholderia pseudomallei 1710b
strain=1710b
na
latest
Complete Genome
Major
Full
2005-10-03
ASM1278v1
TIGR
GCA_000012785.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/785/GCF_000012785.1_ASM1278v1/
na
na
na
haploid
bacteria
7,308,054
7,308,054
68
2
2
2
NCBI RefSeq
GCF_000012785.1-RS_2025_02_14
2025-02-14
6,512
6,300
76
na
GCF_000012805.1
PRJNA224116
SAMN02598329
na
reference genome
323,261
1,229
Nitrosococcus oceani ATCC 19707
strain=ATCC 19707; JCM30415 (Type strain)
na
latest
Complete Genome
Major
Full
2005-10-06
ASM1280v1
DOE Joint Genome Institute
GCA_000012805.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/805/GCF_000012805.1_ASM1280v1/
na
assembly from type material
na
haploid
bacteria
3,522,111
3,522,111
50.5
2
2
2
NCBI RefSeq
GCF_000012805.1-RS_2025_04_26
2025-04-26
3,363
3,255
55
na
GCF_000012825.1
PRJNA224116
SAMN02604309
na
reference genome
435,590
821
Phocaeicola vulgatus ATCC 8482
strain=ATCC 8482
na
latest
Complete Genome
Major
Full
2007-06-29
ASM1282v1
Washington University (WashU)
GCA_000012825.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/825/GCF_000012825.1_ASM1282v1/
na
assembly from type material
na
haploid
bacteria
5,163,189
5,163,189
42
1
1
1
NCBI RefSeq
GCF_000012825.1-RS_2025_03_28
2025-03-28
4,205
3,982
108
17579514
GCF_000012845.1
PRJNA224116
SAMN02604310
na
na
435,591
823
Parabacteroides distasonis ATCC 8503
strain=ATCC 8503
na
latest
Complete Genome
Major
Full
2007-06-29
ASM1284v1
Washington University (WashU)
GCA_000012845.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/845/GCF_000012845.1_ASM1284v1/
na
assembly from type material
na
haploid
bacteria
4,811,379
4,811,379
45
1
1
1
NCBI RefSeq
GCF_000012845.1-RS_2025_04_12
2025-04-12
4,027
3,869
105
17579514
GCF_000012865.1
PRJNA224116
SAMN02603998
na
reference genome
246,194
129,958
Carboxydothermus hydrogenoformans Z-2901
strain=Z-2901
na
latest
Complete Genome
Major
Full
2005-10-23
ASM1286v1
TIGR
GCA_000012865.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/865/GCF_000012865.1_ASM1286v1/
na
assembly from type material
na
haploid
bacteria
2,401,520
2,401,520
42
1
1
1
NCBI RefSeq
GCF_000012865.1-RS_2025_03_28
2025-03-28
2,537
2,448
66
16311624
GCF_000012885.1
PRJNA224116
SAMN02598295
na
reference genome
338,963
19
Syntrophotalea carbinolica DSM 2380
strain=DSM 2380
na
latest
Complete Genome
Major
Full
2006-04-01
ASM1288v1
DOE Joint Genome Institute
GCA_000012885.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/885/GCF_000012885.1_ASM1288v1/
na
assembly from type material
na
haploid
bacteria
3,665,893
3,665,893
55
1
1
1
NCBI RefSeq
GCF_000012885.1-RS_2025_05_01
2025-05-01
3,262
3,174
64
23227809
GCF_000012905.2
PRJNA224116
SAMN02598537
na
na
272,943
1,063
Cereibacter sphaeroides 2.4.1
strain=2.4.1
na
latest
Chromosome
Major
Full
2013-10-23
ASM1290v2
DOE Joint Genome Institute
GCA_000012905.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/905/GCF_000012905.2_ASM1290v2/
na
assembly from type material
na
haploid
bacteria
4,602,977
4,602,877
69
7
7
9
NCBI RefSeq
GCF_000012905.2-RS_2025_12_02
2025-12-02
4,471
4,323
65
23209255
GCF_000012925.1
PRJNA224116
SAMN02598399
na
reference genome
269,799
28,232
Geobacter metallireducens GS-15
strain=GS-15
na
latest
Complete Genome
Major
Full
2005-10-28
ASM1292v1
DOE Joint Genome Institute
GCA_000012925.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/925/GCF_000012925.1_ASM1292v1/
na
assembly from type material
na
haploid
bacteria
4,011,182
4,011,182
59.5
2
2
2
NCBI RefSeq
GCF_000012925.1-RS_2025_03_27
2025-03-27
3,683
3,587
60
19473543
GCF_000012945.1
PRJNA224116
SAMN02598262
na
reference genome
482,957
482,957
Burkholderia lata
strain=383
na
latest
Complete Genome
Major
Full
2005-10-24
ASM1294v1
DOE Joint Genome Institute
GCA_000012945.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/945/GCF_000012945.1_ASM1294v1/
na
assembly from type material
na
haploid
bacteria
8,676,277
8,676,277
66.5
3
3
3
NCBI RefSeq
GCF_000012945.1-RS_2025_04_22
2025-04-22
7,876
7,715
91
na
GCF_000012965.1
PRJNA224116
SAMN02598289
na
reference genome
326,298
39,766
Sulfurimonas denitrificans DSM 1251
strain=DSM 1251
na
latest
Complete Genome
Major
Full
2005-11-03
ASM1296v1
US DOE Joint Genome Institute (JGI-PGF)
GCA_000012965.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/965/GCF_000012965.1_ASM1296v1/
na
assembly from type material
na
haploid
bacteria
2,201,561
2,201,561
34.5
1
1
1
NCBI RefSeq
GCF_000012965.1-RS_2025_05_27
2025-05-27
2,220
2,154
60
18065616
GCF_000012985.1
PRJNA224116
SAMN02603483
na
reference genome
349,521
158,327
Hahella chejuensis KCTC 2396
strain=KCTC 2396
na
latest
Complete Genome
Major
Full
2005-12-15
ASM1298v1
Korea Research Institute of Bioscience and Biotechnology (KRIBB)
GCA_000012985.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/985/GCF_000012985.1_ASM1298v1/
na
assembly from type material
na
haploid
bacteria
7,215,267
7,215,267
54
1
1
1
NCBI RefSeq
GCF_000012985.1-RS_2025_03_27
2025-03-27
6,431
6,307
86
16352867
GCF_000013005.1
PRJNA224116
SAMN00622970
na
na
314,225
39,960
Erythrobacter litoralis HTCC2594
strain=HTCC2594
na
latest
Complete Genome
Major
Full
2006-01-19
ASM1300v1
The Gordon and Betty Moore Foundation Marine Microbiology Initiative
GCA_000013005.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/005/GCF_000013005.1_ASM1300v1/
na
na
na
haploid
bacteria
3,052,398
3,052,398
63
1
1
1
NCBI RefSeq
GCF_000013005.1-RS_2025_03_09
2025-03-09
3,011
2,950
50
na
GCF_000013025.1
PRJNA224116
SAMN02604041
na
reference genome
228,405
81,032
Hyphomonas neptunium ATCC 15444
strain=ATCC 15444
na
latest
Complete Genome
Major
Full
2006-09-19
ASM1302v1
TIGR
GCA_000013025.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/025/GCF_000013025.1_ASM1302v1/
na
assembly from type material
na
haploid
bacteria
3,705,021
3,705,021
62
1
1
1
NCBI RefSeq
GCF_000013025.1-RS_2024_12_09
2024-12-09
3,565
3,497
49
16980487
GCF_000013045.1
PRJNA224116
SAMN02604045
na
na
309,807
146,919
Salinibacter ruber DSM 13855
strain=DSM 13855; M31
na
latest
Complete Genome
Major
Full
2005-12-22
ASM1304v1
TIGR
GCA_000013045.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/045/GCF_000013045.1_ASM1304v1/
na
assembly from type material
na
haploid
bacteria
3,587,328
3,587,328
66
2
2
2
NCBI RefSeq
GCF_000013045.1-RS_2025_04_15
2025-04-15
3,051
2,969
50
16330755
GCF_000013085.1
PRJNA224116
SAMN02598538
na
reference genome
269,796
1,085
Rhodospirillum rubrum ATCC 11170
strain=ATCC 11170
na
latest
Complete Genome
Major
Full
2005-12-13
ASM1308v1
DOE Joint Genome Institute
GCA_000013085.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/085/GCF_000013085.1_ASM1308v1/
na
assembly from type material
na
haploid
bacteria
4,406,557
4,406,557
65.5
2
2
2
NCBI RefSeq
GCF_000013085.1-RS_2025_03_28
2025-03-28
3,979
3,870
70
21886856
GCF_000013125.1
PRJNA224116
SAMN02604015
na
na
212,042
948
Anaplasma phagocytophilum str. HZ
strain=HZ
na
latest
Complete Genome
Major
Full
2006-02-22
ASM1312v1
TIGR
GCA_000013125.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/125/GCF_000013125.1_ASM1312v1/
na
na
na
haploid
bacteria
1,471,282
1,471,282
41.5
1
1
1
NCBI RefSeq
GCF_000013125.1-RS_2025_01_08
2025-01-08
1,161
1,017
44
16482227;21687416
GCF_000013145.1
PRJNA224116
SAMN02604010
na
reference genome
205,920
945
Ehrlichia chaffeensis str. Arkansas
strain=Arkansas
na
latest
Complete Genome
Major
Full
2006-02-22
ASM1314v1
TIGR
GCA_000013145.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/145/GCF_000013145.1_ASM1314v1/
na
assembly from type material
na
haploid
bacteria
1,176,248
1,176,248
30
1
1
1
NCBI RefSeq
GCF_000013145.1-RS_2025_01_08
2025-01-08
974
914
43
16482227
GCF_000013165.1
PRJNA224116
SAMN02604016
na
reference genome
222,891
951
Ehrlichia sennetsu str. Miyayama
strain=Miyayama
na
latest
Complete Genome
Major
Full
2006-02-22
ASM1316v1
TIGR
GCA_000013165.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/165/GCF_000013165.1_ASM1316v1/
na
assembly from type material
na
haploid
bacteria
859,006
859,006
41
1
1
1
NCBI RefSeq
GCF_000013165.1-RS_2025_01_08
2025-01-08
796
754
39
16482227
GCF_000013185.1
PRJNA224116
SAMN02604023
na
na
374,463
186,490
Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
strain=Hc (Homalodisca coagulata)
na
latest
Complete Genome
Major
Full
2006-05-05
ASM1318v1
TIGR
GCA_000013185.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/185/GCF_000013185.1_ASM1318v1/
na
na
na
haploid
bacteria
686,194
686,194
33
1
1
1
NCBI RefSeq
GCF_000013185.1-RS_2025_03_17
2025-03-17
655
585
48
16729848
GCF_000013205.1
PRJNA224116
SAMN02604048
na
na
321,327
321,327
Synechococcus sp. JA-3-3Ab
strain=JA-3-3Ab
na
latest
Complete Genome
Major
Full
2006-02-07
ASM1320v1
TIGR
GCA_000013205.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/205/GCF_000013205.1_ASM1320v1/
na
na
na
haploid
bacteria
2,932,766
2,932,766
60
1
1
1
NCBI RefSeq
GCF_000013205.1-RS_2024_08_13
2024-08-13
2,835
2,714
57
16391090;18059494
GCF_000013225.1
PRJNA224116
SAMN02604049
na
na
321,332
321,332
Synechococcus sp. JA-2-3B'a(2-13)
strain=JA-2-3B'a(2-13)
na
latest
Complete Genome
Major
Full
2006-02-07
ASM1322v1
TIGR
GCA_000013225.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/225/GCF_000013225.1_ASM1322v1/
na
na
na
haploid
bacteria
3,046,682
3,046,682
58.5
1
1
1
NCBI RefSeq
GCF_000013225.1-RS_2024_08_13
2024-08-13
2,832
2,729
53
16391090;18059494
GCF_000013245.1
PRJNA224116
SAMN02604311
na
na
357,544
210
Helicobacter pylori HPAG1
strain=HPAG1
na
latest
Complete Genome
Major
Full
2006-06-07
ASM1324v1
Washington University (WashU)
GCA_000013245.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/245/GCF_000013245.1_ASM1324v1/
na
na
na
haploid
bacteria
1,605,736
1,605,736
39
2
2
2
NCBI RefSeq
GCF_000013245.1-RS_2025_04_15
2025-04-15
1,541
1,415
45
16788065
GCF_000013265.1
PRJNA224116
SAMN00000110
na
na
364,106
562
Escherichia coli UTI89
strain=UTI89
na
latest
Complete Genome
Major
Full
2006-04-07
ASM1326v1
Washington University (WashU)
GCA_000013265.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/265/GCF_000013265.1_ASM1326v1/
na
assembly designated as clade exemplar
na
haploid
bacteria
5,179,971
5,179,971
50.5
2
2
2
NCBI RefSeq
GCF_000013265.1-RS_2025_06_09
2025-06-09
5,071
4,756
117
16585510
GCF_000013285.1
PRJNA224116
SAMN02604008
na
na
195,103
1,502
Clostridium perfringens ATCC 13124
strain=ATCC 13124
na
latest
Complete Genome
Major
Full
2006-07-28
ASM1328v1
TIGR
GCA_000013285.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/285/GCF_000013285.1_ASM1328v1/
na
assembly from type material
na
haploid
bacteria
3,256,683
3,256,683
28.5
1
1
1
NCBI RefSeq
GCF_000013285.1-RS_2024_10_16
2024-10-16
2,978
2,833
121
16825665
GCF_000013305.1
PRJNA224116
SAMN02604181
na
na
362,663
562
Escherichia coli 536
strain=536
na
latest
Complete Genome
Major
Full
2006-07-24
ASM1330v1
University of Goettingen
GCA_000013305.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/305/GCF_000013305.1_ASM1330v1/
na
na
na
haploid
bacteria
4,938,920
4,938,920
50.5
1
1
1
NCBI RefSeq
GCF_000013305.1-RS_2025_06_09
2025-06-09
4,716
4,356
108
16879640
GCF_000013325.1
PRJNA224116
SAMN02598432
na
reference genome
279,238
48,935
Novosphingobium aromaticivorans DSM 12444
strain=DSM 12444
na
latest
Complete Genome
Major
Full
2006-02-13
ASM1332v1
US DOE Joint Genome Institute
GCA_000013325.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/325/GCF_000013325.1_ASM1332v1/
na
assembly from type material
na
haploid
bacteria
4,233,314
4,233,314
65
3
3
3
NCBI RefSeq
GCF_000013325.1-RS_2024_12_09
2024-12-09
4,091
4,006
68
na
GCF_000013345.1
PRJNA224116
SAMN02199398
na
reference genome
106,370
106,370
Frankia casuarinae
strain=CcI3
na
latest
Complete Genome
Major
Full
2006-02-07
ASM1334v1
US DOE Joint Genome Institute (JGI-PGF)
GCA_000013345.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/345/GCF_000013345.1_ASM1334v1/
na
assembly from type material
na
haploid
bacteria
5,433,628
5,433,628
70
1
1
1
NCBI RefSeq
NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
2023-09-06
4,755
4,516
53
17151343
GCF_000013365.1
PRJNA224116
SAMN02598335
na
na
316,058
1,076
Rhodopseudomonas palustris HaA2
strain=HaA2
na
latest
Complete Genome
Major
Full
2006-02-07
ASM1336v1
DOE Joint Genome Institute
GCA_000013365.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/365/GCF_000013365.1_ASM1336v1/
na
na
na
haploid
bacteria
5,331,656
5,331,656
66
1
1
1
NCBI RefSeq
GCF_000013365.1-RS_2025_06_21
2025-06-21
4,833
4,763
56
na
GCF_000013385.1
PRJNA224116
SAMN02598274
na
na
290,397
161,493
Anaeromyxobacter dehalogenans 2CP-C
strain=2CP-C
na
latest
Complete Genome
Major
Full
2006-01-30
ASM1338v1
DOE Joint Genome Institute
GCA_000013385.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/385/GCF_000013385.1_ASM1338v1/
na
na
na
haploid
bacteria
5,013,479
5,013,479
75
1
1
1
NCBI RefSeq
NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
2024-02-15
4,546
4,461
59
na
GCF_000013405.1
PRJNA224116
SAMN02603418
na
reference genome
56,780
316,277
Syntrophus aciditrophicus SB
strain=SB
na
latest
Complete Genome
Major
Full
2006-01-28
ASM1340v1
Integrated Genomics
GCA_000013405.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/405/GCF_000013405.1_ASM1340v1/
na
assembly from type material
na
haploid
bacteria
3,179,300
3,179,300
51.5
1
1
1
NCBI RefSeq
GCF_000013405.1-RS_2024_07_03
2024-07-03
2,954
2,853
56
17442750
GCF_000013425.1
PRJNA57795
na
na
reference genome
93,061
1,280
Staphylococcus aureus subsp. aureus NCTC 8325
strain=NCTC 8325
na
latest
Complete Genome
Major
Full
2006-02-18
ASM1342v1
University of Oklahoma Health Sciences Center
GCA_000013425.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/425/GCF_000013425.1_ASM1342v1/
na
na
na
haploid
bacteria
2,821,361
2,821,361
33
1
1
1
NCBI RefSeq
Annotation submitted by NCBI RefSeq
2016-08-03
2,872
2,767
75
na
GCF_000013445.1
PRJNA224116
SAMN02598287
na
reference genome
323,259
2,203
Methanospirillum hungatei JF-1
strain=JF-1
na
latest
Complete Genome
Major
Full
2006-02-21
ASM1344v1
DOE Joint Genome Institute
GCA_000013445.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/445/GCF_000013445.1_ASM1344v1/
na
assembly from type material
na
haploid
archaea
3,544,738
3,544,738
45
1
1
1
NCBI RefSeq
GCF_000013445.1-RS_2024_10_21
2024-10-21
3,453
3,352
67
26744606
GCF_000013465.1
PRJNA224116
SAMN02604150
na
na
451,515
1,280
Staphylococcus aureus subsp. aureus USA300_FPR3757
strain=FPR3757
na
latest
Complete Genome
Major
Full
2006-02-11
ASM1346v1
University of California, San Francisco
GCA_000013465.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/465/GCF_000013465.1_ASM1346v1/
na
na
na
haploid
bacteria
2,917,469
2,917,469
32.5
4
4
4
NCBI RefSeq
GCF_000013465.1-RS_2025_02_14
2025-02-14
2,928
2,774
72
16517273
GCF_000013485.1
PRJNA224116
SAMN02603501
na
na
370,551
1,314
Streptococcus pyogenes MGAS9429
strain=MGAS9429
na
latest
Complete Genome
Major
Full
2006-05-09
ASM1348v1
Lab of Human Bacterial Pathogenesis
GCA_000013485.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/485/GCF_000013485.1_ASM1348v1/
na
na
na
haploid
bacteria
1,836,467
1,836,467
38.5
1
1
1
NCBI RefSeq
GCF_000013485.1-RS_2025_03_27
2025-03-27
1,834
1,677
89
16636287
GCF_000013565.1
PRJNA224116
SAMN02598279
na
na
290,400
290,400
Jannaschia sp. CCS1
strain=CCS1
na
latest
Complete Genome
Major
Full
2006-03-01
ASM1356v1
US DOE Joint Genome Institute
GCA_000013565.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/565/GCF_000013565.1_ASM1356v1/
na
na
na
haploid
bacteria
4,404,049
4,404,049
62
2
2
2
NCBI RefSeq
GCF_000013565.1-RS_2024_08_22
2024-08-22
4,386
4,311
48
17526795
GCF_000013585.1
PRJNA224116
SAMN02603604
na
na
373,384
623
Shigella flexneri 5 str. 8401
strain=8401
na
latest
Complete Genome
Major
Full
2006-07-28
ASM1358v1
Microbial Genome Center of ChMPH
GCA_000013585.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/585/GCF_000013585.1_ASM1358v1/
na
na
na
haploid
bacteria
4,574,284
4,574,284
51
1
1
1
NCBI RefSeq
GCF_000013585.1-RS_2025_02_14
2025-02-14
4,625
3,878
126
16822325
GCF_000013605.1
PRJNA224116
SAMN02598320
na
reference genome
338,969
192,843
Rhodoferax ferrireducens T118
strain=DSM 15236
na
latest
Complete Genome
Major
Full
2006-03-16
ASM1360v1
DOE Joint Genome Institute
GCA_000013605.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/605/GCF_000013605.1_ASM1360v1/
na
assembly from type material
na
haploid
bacteria
4,969,784
4,969,784
59.5
2
2
2
NCBI RefSeq
GCF_000013605.1-RS_2025_04_19
2025-04-19
4,661
4,554
54
na
GCF_000013645.1
PRJNA224116
SAMN02598451
na
reference genome
266,265
36,873
Paraburkholderia xenovorans LB400
strain=LB400
na
latest
Complete Genome
Major
Full
2006-04-11
ASM1364v1
DOE Joint Genome Institute
GCA_000013645.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/645/GCF_000013645.1_ASM1364v1/
na
assembly from type material
na
haploid
bacteria
9,731,138
9,731,138
62.5
3
3
3
NCBI RefSeq
GCF_000013645.1-RS_2024_12_09
2024-12-09
8,858
8,535
87
17030797
GCF_000013665.1
PRJNA224116
SAMN02598483
na
reference genome
203,122
86,304
Saccharophagus degradans 2-40
strain=2-40
na
latest
Complete Genome
Major
Full
2006-03-20
ASM1366v1
DOE Joint Genome Institute
GCA_000013665.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/665/GCF_000013665.1_ASM1366v1/
na
assembly from type material
na
haploid
bacteria
5,057,531
5,057,531
46
1
1
1
NCBI RefSeq
GCF_000013665.1-RS_2025_03_02
2025-03-02
4,141
4,074
51
18516288
GCF_000013705.1
PRJNA224116
SAMN02598256
na
reference genome
265,072
405
Methylobacillus flagellatus KT
strain=KT
na
latest
Complete Genome
Major
Full
2006-04-11
ASM1370v1
DOE Joint Genome Institute
GCA_000013705.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/705/GCF_000013705.1_ASM1370v1/
na
assembly from type material
na
haploid
bacteria
2,971,517
2,971,517
55.5
1
1
1
NCBI RefSeq
GCF_000013705.1-RS_2024_12_09
2024-12-09
2,875
2,801
55
na
GCF_000013725.1
PRJNA224116
SAMN02598545
na
reference genome
259,564
29,291
Methanococcoides burtonii DSM 6242
strain=DSM 6242
na
latest
Complete Genome
Major
Full
2006-04-11
ASM1372v1
DOE Joint Genome Institute
GCA_000013725.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/725/GCF_000013725.1_ASM1372v1/
na
assembly from type material
na
haploid
archaea
2,575,032
2,575,032
41
1
1
1
NCBI RefSeq
GCF_000013725.1-RS_2024_10_21
2024-10-21
2,641
2,485
65
na
GCF_000013745.1
PRJNA224116
SAMN02598337
na
na
316,056
1,076
Rhodopseudomonas palustris BisB18
strain=BisB18
na
latest
Complete Genome
Major
Full
2006-03-24
ASM1374v1
DOE Joint Genome Institute
GCA_000013745.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/745/GCF_000013745.1_ASM1374v1/
na
na
na
haploid
bacteria
5,513,844
5,513,844
65
1
1
1
NCBI RefSeq
GCF_000013745.1-RS_2025_02_16
2025-02-16
5,075
4,955
63
na
GCF_000013765.1
PRJNA224116
SAMN02598300
na
reference genome
318,161
192,073
Shewanella denitrificans OS217
strain=OS217
na
latest
Complete Genome
Major
Full
2006-04-11
ASM1376v1
DOE Joint Genome Institute
GCA_000013765.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/765/GCF_000013765.1_ASM1376v1/
na
assembly from type material
na
haploid
bacteria
4,545,906
4,545,906
45
1
1
1
NCBI RefSeq
GCF_000013765.1-RS_2024_12_13
2024-12-13
3,969
3,793
121
na
GCF_000013785.1
PRJNA224116
SAMN02603910
na
na
379,731
316
Stutzerimonas stutzeri A1501
strain=A1501
na
latest
Complete Genome
Major
Full
2007-05-08
ASM1378v1
The Biotechnology Research Institute,The Chinese Academy of Agricultural Sciences
GCA_000013785.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/785/GCF_000013785.1_ASM1378v1/
na
na
na
haploid
bacteria
4,567,418
4,567,418
64
1
1
1
NCBI RefSeq
GCF_000013785.1-RS_2025_02_02
2025-02-02
4,270
4,127
76
18495935
GCF_000013805.1
PRJNA224116
SAMN02598370
na
na
377,628
632
Yersinia pestis Nepal516
strain=Nepal516
na
latest
Complete Genome
Major
Full
2006-06-12
ASM1380v1
DOE Joint Genome Institute
GCA_000013805.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/805/GCF_000013805.1_ASM1380v1/
na
na
na
haploid
bacteria
4,646,286
4,646,286
47.5
3
3
3
NCBI RefSeq
GCF_000013805.1-RS_2025_03_27
2025-03-27
4,219
3,916
104
16740952
GCF_000013825.1
PRJNA224116
SAMN02598369
na
na
360,102
632
Yersinia pestis Antiqua
strain=Antiqua
na
latest
Complete Genome
Major
Full
2006-06-12
ASM1382v1
DOE Joint Genome Institute
GCA_000013825.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/825/GCF_000013825.1_ASM1382v1/
na
na
na
haploid
bacteria
4,879,836
4,879,836
47.5
4
4
4
NCBI RefSeq
GCF_000013825.1-RS_2025_03_27
2025-03-27
4,470
4,078
101
16740952
GCF_000013845.2
PRJNA224116
SAMN02604026
na
na
289,380
1,502
Clostridium perfringens SM101
strain=SM101
na
latest
Complete Genome
Major
Full
2006-07-26
ASM1384v2
TIGR
GCA_000013845.2
different
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/845/GCF_000013845.2_ASM1384v2/
na
na
na
haploid
bacteria
2,921,996
2,921,996
28
3
3
3
NCBI RefSeq
GCF_000013845.2-RS_2026_04_17
2026-04-17
2,719
2,510
128
16825665
GCF_000013865.1
PRJNA224116
SAMN02598293
na
na
296,591
296,591
Polaromonas sp. JS666
strain=JS666
na
latest
Complete Genome
Major
Full
2006-04-11
ASM1386v1
DOE Joint Genome Institute
GCA_000013865.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/865/GCF_000013865.1_ASM1386v1/
na
na
na
haploid
bacteria
5,898,676
5,898,676
62
3
3
3
NCBI RefSeq
GCF_000013865.1-RS_2024_08_13
2024-08-13
5,675
5,526
51
na
GCF_000013885.1
PRJNA224116
SAMN02598307
na
reference genome
323,097
912
Nitrobacter hamburgensis X14
strain=X14
na
latest
Complete Genome
Major
Full
2006-04-17
ASM1388v1
DOE Joint Genome Institute
GCA_000013885.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/885/GCF_000013885.1_ASM1388v1/
na
assembly from type material
na
haploid
bacteria
5,011,522
5,011,522
61.5
4
4
4
NCBI RefSeq
GCF_000013885.1-RS_2025_05_26
2025-05-26
4,919
4,503
59
na
GCF_000013905.1
PRJNA224116
SAMN02598327
na
reference genome
335,284
330,922
Psychrobacter cryohalolentis K5
strain=K5
na
latest
Complete Genome
Major
Full
2006-04-20
ASM1390v1
DOE Joint Genome Institute
GCA_000013905.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/905/GCF_000013905.1_ASM1390v1/
na
assembly from type material
na
haploid
bacteria
3,101,097
3,101,097
42
2
2
2
NCBI RefSeq
GCF_000013905.1-RS_2024_11_26
2024-11-26
2,615
2,524
64
na
GCF_000013925.1
PRJNA224116
SAMN02603346
na
na
362,242
1,809
Mycobacterium ulcerans Agy99
strain=Agy99
na
latest
Complete Genome
Major
Full
2006-12-04
ASM1392v2
Institut Pasteur
GCA_000013925.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/925/GCF_000013925.1_ASM1392v2/
na
na
na
haploid
bacteria
5,805,761
5,805,761
65.5
2
2
2
NCBI RefSeq
GCF_000013925.1-RS_2024_07_15
2024-07-15
5,236
4,240
51
14736915;17210928
GCF_000013945.1
PRJNA224116
SAMN02603615
na
na
355,276
174
Leptospira borgpetersenii serovar Hardjo-bovis str. L550
strain=L550
na
latest
Complete Genome
Major
Full
2006-10-21
ASM1394v1
Monash University
GCA_000013945.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/945/GCF_000013945.1_ASM1394v1/
na
na
na
haploid
bacteria
3,931,782
3,931,782
40
2
2
2
NCBI RefSeq
GCF_000013945.1-RS_2024_09_03
2024-09-03
3,479
3,001
44
16973745