Dataset Preview
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 20 new columns ({'refAmino', 'gnomAD_AF', 'Codons', 'REF_ALLELE', 'Proteomic_Context', 'MW_change', 'Hydrophobicity_change', 'Allele', 'AltAmino', 'Amino_acids', 'Genomic_Context', 'am_pathogenicity', 'REVEL', 'PolyPhen', 'CLIN_SIG', 'phyloP100way_vertebrate', 'SIFT', 'CADD_PHRED', 'phastCons100way_vertebrate', 'Polarity_change'}) and 1 missing columns ({'---'}).
This happened while the csv dataset builder was generating data using
zip://finalDataset.csv::hf://datasets/huseyincavus/genomics-features@9de391f9c4dc02f9c65a3bc1cc13d48085feb385/genomics-features.zip, ['hf://datasets/huseyincavus/genomics-features@9de391f9c4dc02f9c65a3bc1cc13d48085feb385/genomics-features.zip']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1848, in _prepare_split_single
writer.write_table(table)
~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2306, in cast_table_to_schema
raise CastError(
...<3 lines>...
)
datasets.table.CastError: Couldn't cast
REF_ALLELE: string
Allele: string
Codons: string
Amino_acids: string
refAmino: string
AltAmino: string
Hydrophobicity_change: double
Polarity_change: double
MW_change: double
Genomic_Context: string
Proteomic_Context: string
phastCons100way_vertebrate: double
phyloP100way_vertebrate: double
SIFT: double
PolyPhen: double
CADD_PHRED: double
REVEL: double
am_pathogenicity: double
gnomAD_AF: double
CLIN_SIG: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 2761
to
{'---': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1850, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
...<4 lines>...
)
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 20 new columns ({'refAmino', 'gnomAD_AF', 'Codons', 'REF_ALLELE', 'Proteomic_Context', 'MW_change', 'Hydrophobicity_change', 'Allele', 'AltAmino', 'Amino_acids', 'Genomic_Context', 'am_pathogenicity', 'REVEL', 'PolyPhen', 'CLIN_SIG', 'phyloP100way_vertebrate', 'SIFT', 'CADD_PHRED', 'phastCons100way_vertebrate', 'Polarity_change'}) and 1 missing columns ({'---'}).
This happened while the csv dataset builder was generating data using
zip://finalDataset.csv::hf://datasets/huseyincavus/genomics-features@9de391f9c4dc02f9c65a3bc1cc13d48085feb385/genomics-features.zip, ['hf://datasets/huseyincavus/genomics-features@9de391f9c4dc02f9c65a3bc1cc13d48085feb385/genomics-features.zip']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
--- string |
|---|
license: cc0-1.0 |
task_categories: |
- tabular-classification |
tags: |
- genomics |
- clinvar |
dataset_info: |
features: |
- name: Gene |
dtype: string |
- name: Variation |
dtype: string |
- name: CS |
dtype: string |
- name: SIFT_score |
dtype: float64 |
- name: SIFT4G_score |
dtype: float64 |
- name: Polyphen2_HDIV_score |
dtype: float64 |
- name: Polyphen2_HVAR_score |
dtype: float64 |
- name: LRT_score |
dtype: float64 |
- name: MutationTaster_score |
dtype: float64 |
- name: MutationAssessor_score |
dtype: float64 |
- name: FATHMM_score |
dtype: float64 |
- name: PROVEAN_score |
dtype: float64 |
- name: VEST4_score |
dtype: float64 |
- name: MetaSVM_score |
dtype: float64 |
- name: MetaLR_score |
dtype: float64 |
- name: MetaRNN_score |
dtype: float64 |
- name: M-CAP_score |
dtype: float64 |
- name: REVEL_score |
dtype: float64 |
- name: MutPred_score |
dtype: float64 |
- name: MVP_score |
dtype: float64 |
- name: gMVP_score |
dtype: float64 |
- name: MPC_score |
dtype: float64 |
- name: PrimateAI_score |
dtype: float64 |
- name: DEOGEN2_score |
dtype: float64 |
- name: BayesDel_addAF_score |
dtype: float64 |
- name: BayesDel_noAF_score |
dtype: float64 |
- name: ClinPred_score |
dtype: float64 |
- name: LIST-S2_score |
dtype: float64 |
- name: DANN_score |
dtype: float64 |
- name: fathmm-MKL_coding_score |
dtype: float64 |
- name: fathmm-XF_coding_score |
dtype: float64 |
- name: GenoCanyon_score |
dtype: float64 |
- name: integrated_fitCons_score |
dtype: float64 |
- name: GM12878_fitCons_score |
dtype: float64 |
- name: H1-hESC_fitCons_score |
dtype: float64 |
- name: HUVEC_fitCons_score |
dtype: float64 |
- name: CADD_score |
dtype: float64 |
- name: Eigen_score |
dtype: float64 |
- name: Eigen-PC_score |
dtype: float64 |
- name: GERP++_score |
dtype: float64 |
- name: phastCons100way_vertebrate_score |
dtype: float64 |
- name: phastCons470way_mammalian_score |
dtype: float64 |
- name: phastCons17way_primate_score |
dtype: float64 |
- name: SiPhy_score |
dtype: float64 |
- name: bStatistic_score |
dtype: float64 |
- name: AlphaMissense_score |
dtype: float64 |
End of preview.
- Downloads last month
- 37