README.md

metadata

license: cc0-1.0
task_categories:
  - tabular-classification
tags:
  - genomics
  - clinvar
dataset_info:
  features:
    - name: Gene
      dtype: string
    - name: Variation
      dtype: string
    - name: CS
      dtype: string
    - name: SIFT_score
      dtype: float64
    - name: SIFT4G_score
      dtype: float64
    - name: Polyphen2_HDIV_score
      dtype: float64
    - name: Polyphen2_HVAR_score
      dtype: float64
    - name: LRT_score
      dtype: float64
    - name: MutationTaster_score
      dtype: float64
    - name: MutationAssessor_score
      dtype: float64
    - name: FATHMM_score
      dtype: float64
    - name: PROVEAN_score
      dtype: float64
    - name: VEST4_score
      dtype: float64
    - name: MetaSVM_score
      dtype: float64
    - name: MetaLR_score
      dtype: float64
    - name: MetaRNN_score
      dtype: float64
    - name: M-CAP_score
      dtype: float64
    - name: REVEL_score
      dtype: float64
    - name: MutPred_score
      dtype: float64
    - name: MVP_score
      dtype: float64
    - name: gMVP_score
      dtype: float64
    - name: MPC_score
      dtype: float64
    - name: PrimateAI_score
      dtype: float64
    - name: DEOGEN2_score
      dtype: float64
    - name: BayesDel_addAF_score
      dtype: float64
    - name: BayesDel_noAF_score
      dtype: float64
    - name: ClinPred_score
      dtype: float64
    - name: LIST-S2_score
      dtype: float64
    - name: DANN_score
      dtype: float64
    - name: fathmm-MKL_coding_score
      dtype: float64
    - name: fathmm-XF_coding_score
      dtype: float64
    - name: GenoCanyon_score
      dtype: float64
    - name: integrated_fitCons_score
      dtype: float64
    - name: GM12878_fitCons_score
      dtype: float64
    - name: H1-hESC_fitCons_score
      dtype: float64
    - name: HUVEC_fitCons_score
      dtype: float64
    - name: CADD_score
      dtype: float64
    - name: Eigen_score
      dtype: float64
    - name: Eigen-PC_score
      dtype: float64
    - name: GERP++_score
      dtype: float64
    - name: phastCons100way_vertebrate_score
      dtype: float64
    - name: phastCons470way_mammalian_score
      dtype: float64
    - name: phastCons17way_primate_score
      dtype: float64
    - name: SiPhy_score
      dtype: float64
    - name: bStatistic_score
      dtype: float64
    - name: AlphaMissense_score
      dtype: float64
    - name: Envision_score
      dtype: float64
    - name: SuSPect_score
      dtype: float64
    - name: VARITY_R_score
      dtype: float64
    - name: VARITY_ER_score
      dtype: float64
    - name: VARITY_R_LOO_score
      dtype: float64
    - name: VARITY_ER_LOO_score
      dtype: float64
    - name: PONP2_score
      dtype: float64
    - name: DeepSAV_score
      dtype: float64
    - name: VESPA_score
      dtype: float64
    - name: ESM1b_score
      dtype: float64
    - name: CPT_score
      dtype: float64
    - name: EVE_score
      dtype: float64
    - name: ESM1v_score
      dtype: float64
    - name: MutFormer_score
      dtype: float64
    - name: MISTIC_score
      dtype: float64
    - name: InMeRF_score
      dtype: float64
    - name: LASSIE_score
      dtype: float64
    - name: CAPICE_score
      dtype: float64
    - name: SIGMA_score
      dtype: float64
    - name: MutScore_score
      dtype: float64
    - name: UNEECON_score
      dtype: float64
    - name: PhDSNP_score
      dtype: float64
    - name: gnomAD_exomes_AF
      dtype: float64
  splits:
    - name: train
      num_bytes: 8022220
      num_examples: 14212
    - name: validation
      num_bytes: 260114
      num_examples: 461
  download_size: 5553658
  dataset_size: 8282334
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/train-*
      - split: validation
        path: data/validation-*

ClinVar Conflicting: https://www.kaggle.com/datasets/kevinarvai/clinvar-conflicting

VEP-Benchmark: https://github.com/DSIMB/VEP-Benchmark/tree/main