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Cell Images (RxRx3)
OpenPhenom
Data source: https://huggingface.co/datasets/recursionpharma/rxrx3-core/tree/main
- rxrx3_smiles_embedding.parquet/csv: metatdata and embedding data merged, for rows with SMILES column not being NaN
- rxrx3_smiles_embedding.pt: pytorch object saved with keys 'embeddings', 'smiles', 'well_id'
Protein sequence (TDC DTI)
ESM-2
- protein-esm2.csv: protein ID, sequence, feature_* (0~2559)
- 5222 proteins
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