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Task types by split

task_type train test
coding_variant 101 8
conservation_reasoning 624 132
counterfactual 598 202
disease_reasoning 523 93
hallucination_detection 627 173
interaction_propagation 651 149
path_traversal 263 151
structural_effect 677 112

Schema

Each item has:

  • id, task_type, pipeline (coding_variant/noncoding_regulatory), difficulty
  • question, answer, choices (MCQ options, when applicable)
  • context -- either a templated chain narration, or (if llm_rewrite was applied) an LLM-rewritten fluent Step/Evidence/Interpretation/Conclusion narrative
  • reasoning_chain -- the grounded, machine-checkable multi-hop path (steps: each with source_node_id/target_node_id/edge_relation/ edge_confidence/edge_source_db), never touched by any LLM step
  • modality_data -- raw modality payloads (sequence, structural, transcriptomic, post_translational, signaling_role, etc.) attached to the chain's anchor nodes
  • evidence -- supporting evidence entries with source database/PMID
  • path_confidence_score -- continuous, confidence-derived difficulty score

Companion graph

graph.json (if included in this repo) is the exact knowledge graph these items' reasoning_chain node IDs refer to -- load it with GenBench's GraphBuilder.load() to resolve full node/edge attributes beyond what's inlined in each item.

Source

Generated from GenBench:

  • train: data\hf_generated\splits_v6\train_coding.jsonl
  • test: data\hf_generated\splits_v6\test_coding.jsonl
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