Datasets:

imageomics
/

ToL-EDA

Note: There are new files added to look at predicted-catalog.csv. This file provides the information for images expected to be in the dataset (prior to webdataset creation). There are about 27K entries that do not make it into the final webdataset. Furthermore, these entries have full taxonomic rank filled in (as evidenced by the difference in count of full taxonomic rank between predicted-catalog.csv and catalog.csv noted in ToL_predicted-cateogory_EDA.ipynb.

Need to track pre-webdataset catalog with LFS.8dca1b60

Update data files, including pre-webdataset catalog, this is v3.3.91beb3aa

Updated EDA in notebooks for v3.3, also added analysis of predicted entries prior to webdataset creation, shows 27K more images expectd.6b582046

Added explanation of new files.67e2a4af

egrace479 changed pull request status to open Oct 30, 2023

egrace479

HDR Imageomics Institute org Oct 31, 2023

@samuelstevens I'm assuming this all looks good to you since you marked data-regen as done?

Added count of unique 7-tuples and genus-species pairs.e00f09d6

samuelstevens

HDR Imageomics Institute org Oct 31, 2023

Oh I didn't look at this file, I will check again.

egrace479 changed pull request status to merged Nov 9, 2023

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