plant mislabeling

data/taxa_files/README.md

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+# Taxa Files -- Hemihomonym Exploration
+
+## Background
+
+While looking for a hybrid subset for the [HDR Anomaly Detection ML Challenge](https://github.com/Imageomics/HDR-anomaly-challenge), I found that we had some plants mislabeled (from family up) to the phyla _Artrhopoda_ and _Chordata_ (possibly others).
+
+It seems at least two of the genera that were potentially mislabeled on the higher order are known homonyms/hemihomonyms indicated in the [IRMNG list](https://www.irmng.org/homonyms.php) (see [genus level L](https://www.irmng.org/homonyms.php?tRank=180&start_letter=L) and [genus level V](https://www.irmng.org/homonyms.php?tRank=180&start_letter=V)):
+> Laelia
+>     [Laelia J. Lindley, 1831](https://www.irmng.org/aphia.php?p=taxdetails&id=1373938) · Plantae (Kingdom) > Tracheophyta (Phylum) > Magnoliopsida (Class) > Asparagales (Order) > Orchidaceae (Family)
+> X [Laelia Adanson, 1763](https://www.irmng.org/aphia.php?p=taxdetails&id=1373939) accepted as [Laelia Adanson, 1763](https://www.irmng.org/aphia.php?p=taxdetails&id=1373939) · Plantae (Kingdom) > Tracheophyta (Phylum) > Magnoliopsida (Class) > Brassicales (Order) > Brassicaceae (Family)
+>  X [Laelia Persoon, 1806](https://www.irmng.org/aphia.php?p=taxdetails&id=1373969) accepted as · Plantae (Kingdom) > Tracheophyta (Phylum) > Magnoliopsida (Class) > Brassicales (Order) > Brassicaceae (Family)
+>     [Laelia Stephens, 1828](https://www.irmng.org/aphia.php?p=taxdetails&id=1373968) · Animalia (Kingdom) > Arthropoda (Phylum) > Insecta (Class) > Lepidoptera (Order) > Erebidae (Family)
+
+and
+
+> Viola
+>     [Viola Evans, 1953](https://www.irmng.org/aphia.php?p=taxdetails&id=1332389) · Animalia (Kingdom) > Arthropoda (Phylum) > Insecta (Class) > Lepidoptera (Order) > Hesperiidae (Family)
+>     [Viola Linnaeus, 1753](https://www.irmng.org/aphia.php?p=taxdetails&id=1332414) · Plantae (Kingdom) > Tracheophyta (Phylum) > Magnoliopsida (Class) > Malpighiales (Order) > Violaceae (Family)
+
+This may be part of the reason we had so many misclassifications into _Arthropoda_. 
+
+## Exploratory Files
+
+There is a notebook that partially explores this (`notebooks/make_ToL_hybrids_Arthropoda_EDA.ipynb`) and two associated files (`data/taxa_files/ToL_hybrids_Arthropoda.csv` and `data/taxa_files/sample_arthropoda_mislabels.txt`), the latter of which is a list of filenames for the sample images in `data/taxa_files/sample_images/`.
+
+
+`ToL_hybrids_Arthropoda.csv` is a subset of the EOL subset of the TreeOfLife-10M dataset and has the following columns:
+  - `treeoflife_id`: unique identifier for the image in the dataset.
+  - `eol_content_id`: unique identifier within EOL database for images sourced from [EOL](https://eol.org). Note that EOL content IDs are not stable.
+  - `eol_page_id`: identifier of page from which images from EOL are sourced. Note that an image's association to a particular page ID may change with updates to the EOL (or image provider's) hierarchy. However, EOL taxon page IDs are stable.
+  - `kingdom`: kingdom to which the subject of the image belongs (`Animalia`, `Plantae`) -- double check just the two
+  - `phylum`: phylum to which the subject of the image belongs.
+  - `class`: class to which the subject of the image belongs.
+  - `order`: order to which the subject of the image belongs.
+  - `family`: family to which the subject of the image belongs.
+  - `genus`: genus to which the subject of the image belongs.
+  - `species`: species to which the subject of the image belongs.
+  - `common`: common name associated with the subject of the image where available. Otherwise, this is the scientific name (`genus-species`), else whatever subset of the taxonomic hierarchy is available (eg., `kingdom-phylum-class-order` or `kingdom-phylum-class-order-family`). All images have a non-null entry for this column.
+
+`metadata.csv` is the `sample_image` subset of `ToL_hybrids_Arthropoda.csv` merged with the [TreeOfLife-10M license file](https://huggingface.co/datasets/imageomics/TreeOfLife-10M/blob/main/metadata/licenses.csv), so it has all columns listed above plus the following:
+  - `md5`: MD5 hash of the image.
+  - `medium_source_url`: URL pointing to source of image.
+  - `eol_full_size_copy_url`: URL to access the full-sized image; this is the URL from which the image was downloaded for this dataset (see [ToL-10M Initial Data Collection and Normalization](https://huggingface.co/datasets/imageomics/TreeOfLife-10M#initial-data-collection-and-normalization) for more information on this process).
+  - `license_name`: name of license attached to the image (`cc-publicdomain`, `cc-by-sa-3.0`, `cc-by-nc-sa-3.0`, `cc-by-nc-4.0`, `cc-by-nc`). All sample images are shared under their original licenses, as indicated in this file.
+  - `copyright_owner`: copyright holder for the image. 
+  - `license_link`: URL to the listed license.
+  - `title`: title provided for the image, filled with `not provided` if no title was provided (all images in this subset).
+
+As a result of this discovery, we performed a re-resolution of the TreeOfLife-10M taxonomy from the original published dataset ([TreeOfLife-10M (Revision 69ca82e), DOI: 10.57967/hf/1972](https://huggingface.co/datasets/imageomics/TreeOfLife-10M/tree/69ca82e7481dcae0764f7c5452ea32b3a41cf620), the reproducibility + embeddings update to the original is [Revision ffa2a31, DOI: 10.57967/hf/7542](https://huggingface.co/datasets/imageomics/TreeOfLife-10M/tree/ffa2a318a1396f2f9e456ba171d3b5b5d8b4f051)). This was completed using [TaxonoPy](https://github.com/Imageomics/TaxonoPy), which was created to align the taxonomy across source datasets used for [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M).

data/taxa_files/ToL_hybrids_Arthropoda.csv

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+version https://git-lfs.github.com/spec/v1
+oid sha256:15bfc6b9f9f68bdd8469a9f5957bdd0e123debb801329f096f00eba6aef89ade
+size 48484532

data/taxa_files/metadata.csv

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+treeoflife_id,kingdom,phylum,class,order,family,genus,species,common,filename,eol_content_id,eol_page_id,md5,medium_source_url,eol_full_size_copy_url,license_name,copyright_owner,license_link,title
+9109d540-e646-4e50-b920-ca53a8985259,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,chamissoniana,olopu,8792002_49952170_eol-full-size-copy.jpg,8792002,49952170,1a014627197f10bf89cf581358b878fe,http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0912/0379.jpeg,https://content.eol.org/data/media/86/c6/33/7.CalPhotos_0000_0000_0912_0379.jpg,cc-by-nc-sa-3.0,2012 Eric White,https://creativecommons.org/licenses/by-nc-sa/3.0,not provided
+6488b660-d6fa-44d5-9304-a97390dc08df,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,wittrockiana,hybrid violet,8757102_49951271_eol-full-size-copy.jpg,8757102,49951271,6d8395676b9b27ee0f4b8f39d8b9feff,http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0709/2225.jpeg,https://content.eol.org/data/media/86/4d/d2/7.CalPhotos_0000_0000_0709_2225.jpg,cc-publicdomain,2009 Nick Kurzenko,https://creativecommons.org/publicdomain/zero/1.0,not provided
+7bf000bb-8f79-44ec-b7e2-c21922607a41,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,eriocarpon,Viola eriocarpon,22255430_64639830_eol-full-size-copy.jpg,22255430,64639830,367311dfc60f80478a9c7aa2ddcd0e66,https://inaturalist-open-data.s3.amazonaws.com/photos/118802098/original.jpg,https://content.eol.org/data/media/57/72/13/18.0d74b432a707959c26555b20a538109a.jpg,cc-by-nc-4.0,e_skees2021,https://creativecommons.org/licenses/by-nc/4.0,not provided
+f20acda4-cdfd-49de-b89a-6e1dbea9d250,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,biflora,arctic yellow violet,20507360_64639770_eol-full-size-copy.jpg,20507360,64639770,93805d5184805d0adc100ec17969d1ed,https://inaturalist-open-data.s3.amazonaws.com/photos/91149264/original.jpeg,https://content.eol.org/data/media/72/1e/59/18.a27fd924df43bed1cefb6a0a596e8dea.jpg,cc-by-nc-4.0,Tommy Landry,https://creativecommons.org/licenses/by-nc/4.0,not provided
+3980fca2-4f1a-47ce-85db-632f2dc2ae30,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,langsdorffii,Aleutian violet,30038365_65415248_eol-full-size-copy.jpg,30038365,65415248,dfc0ed93a3d2a0e69b0eacf16ebc1dcb,https://upload.wikimedia.org/wikipedia/commons/4/43/Viola_langsdorfii_subsp._sachalinensis_1.JPG,https://content.eol.org/data/media/f6/e6/41/509.937c7c8fd6f104f17882fec942a23b88.jpg,cc-by-sa-3.0,Qwert1234,https://creativecommons.org/licenses/by-sa/3.0,not provided
+3f4286e5-b5d7-4533-9130-ef5d15a1c048,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,purpurea,goosefoot violet,8922943_49955771_eol-full-size-copy.jpg,8922943,49955771,6507c2423931c44b53d93c3c13ac7b33,http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0612/0108.jpeg,https://content.eol.org/data/media/86/23/db/7.CalPhotos_0000_0000_0612_0108.jpg,cc-by-nc,2012 Steve Matson,https://creativecommons.org/licenses/by-nc/4.0,not provided
+e8190144-9033-4998-92be-ae278e4baedb,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,×williamsii,Viola ×williamsii,29907020_65415246_eol-full-size-copy.jpg,29907020,65415246,573d137af05e63b6937bf55dfcaf0b9e,https://upload.wikimedia.org/wikipedia/commons/6/61/Viola_cornuta_Babyface_Ruby_And_Gold_0zz.jpg,https://content.eol.org/data/media/65/da/45/509.edf29ddb4d5abf13b7434f076efa61c7.jpg,cc-by-sa-3.0,Photo by David J. Stang,https://creativecommons.org/licenses/by-sa/3.0,not provided
+aa4abda6-2b9a-400f-8d27-16be1d75b577,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,wittrockiana,hybrid violet,8757093_49951271_eol-full-size-copy.jpg,8757093,49951271,cdd3c262f69d3f61e81eb3f464d0d553,http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0709/2216.jpeg,https://content.eol.org/data/media/86/4d/c9/7.CalPhotos_0000_0000_0709_2216.jpg,cc-publicdomain,2009 Nick Kurzenko,https://creativecommons.org/publicdomain/zero/1.0,not provided
+875156a5-5811-4069-ab8d-ee51c0ae0454,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,chamissoniana,olopu,8791997_49952170_eol-full-size-copy.jpg,8791997,49952170,fa092cb496576ced7bca0f87f9e59f24,http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0514/2032.jpeg,https://content.eol.org/data/media/85/f3/85/7.CalPhotos_0000_0000_0514_2032.jpg,cc-by-nc-sa-3.0,2014 Eric White,https://creativecommons.org/licenses/by-nc-sa/3.0,not provided
+1ae66dcb-84c5-43ff-ab66-0faee923635a,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,×williamsii,Viola ×williamsii,29906970_65415246_eol-full-size-copy.jpg,29906970,65415246,d856aa69bcd7a9cbadf413cc1768890d,https://upload.wikimedia.org/wikipedia/commons/8/8b/Hornveilchen_(Viola_cornuta).jpg,https://content.eol.org/data/media/59/dc/d7/509.6e24c841c1b3d4d135261a2937875d2e.jpg,cc-by-sa-3.0,Burkhard Mücke,https://creativecommons.org/licenses/by-sa/3.0,not provided
+5130cae7-5e42-4552-a174-50339578b7b5,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,wittrockiana,hybrid violet,8757071_49951271_eol-full-size-copy.jpg,8757071,49951271,7f1dc988b86f3817727e4a90682198fc,http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0709/2192.jpeg,https://content.eol.org/data/media/86/4d/b2/7.CalPhotos_0000_0000_0709_2192.jpg,cc-publicdomain,2009 Nick Kurzenko,https://creativecommons.org/publicdomain/zero/1.0,not provided
+ebd8860b-3713-4830-9fa0-5a56678a2c75,Animalia,Arthropoda,Insecta,Lepidoptera,Hesperiidae,Viola,wittrockiana,hybrid violet,8757019_49951271_eol-full-size-copy.jpg,8757019,49951271,80b58d1dbaab016965ded4902317ed37,http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0606/1345.jpeg,https://content.eol.org/data/media/86/0f/f4/7.CalPhotos_0000_0000_0606_1345.jpg,cc-publicdomain,2006 Nick Kurzenko,https://creativecommons.org/publicdomain/zero/1.0,not provided

data/taxa_files/sample_arthropoda_mislabels.txt

@@ -0,0 +1,12 @@
+8757071_49951271_eol-full-size-copy.jpg
+20507360_64639770_eol-full-size-copy.jpg
+8757019_49951271_eol-full-size-copy.jpg
+8792002_49952170_eol-full-size-copy.jpg
+8757102_49951271_eol-full-size-copy.jpg
+8757093_49951271_eol-full-size-copy.jpg
+30038365_65415248_eol-full-size-copy.jpg
+29906970_65415246_eol-full-size-copy.jpg
+8791997_49952170_eol-full-size-copy.jpg
+8922943_49955771_eol-full-size-copy.jpg
+29907020_65415246_eol-full-size-copy.jpg
+22255430_64639830_eol-full-size-copy.jpg

notebooks/make_ToL_hybrids_Arthropoda_EDA.ipynb

@@ -0,0 +1,1675 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pandas as pd\n",
+    "import seaborn as sns\n",
+    "\n",
+    "sns.set_style(\"whitegrid\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Read in our TreeOfLife-10M Catalog to check for hybrid stats. Note that it can be found [here](https://huggingface.co/datasets/imageomics/ToL-EDA/blob/main/data/catalog.csv) and will not be reproduced on GitHub."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "DATA_PATH = \"../data/\""
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df = pd.read_csv(DATA_PATH + \"catalog.csv\", low_memory = False)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "The `train_small` column is duplicates of `train`, so we will drop those to analyze the full training set plus val."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 4,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df = df.loc[df.split != 'train_small']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "194"
+      ]
+     },
+     "execution_count": 5,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "hybrid_list = [species for species in list(df.loc[df[\"species\"].notna(), \"species\"].unique()) if \" x \" in species]\n",
+    "len(hybrid_list)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>split</th>\n",
+       "      <th>treeoflife_id</th>\n",
+       "      <th>eol_content_id</th>\n",
+       "      <th>eol_page_id</th>\n",
+       "      <th>bioscan_part</th>\n",
+       "      <th>bioscan_filename</th>\n",
+       "      <th>inat21_filename</th>\n",
+       "      <th>inat21_cls_name</th>\n",
+       "      <th>inat21_cls_num</th>\n",
+       "      <th>kingdom</th>\n",
+       "      <th>phylum</th>\n",
+       "      <th>class</th>\n",
+       "      <th>order</th>\n",
+       "      <th>family</th>\n",
+       "      <th>genus</th>\n",
+       "      <th>species</th>\n",
+       "      <th>common</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>2240145</th>\n",
+       "      <td>train</td>\n",
+       "      <td>adb05f6d-5203-4c35-b492-78cd9f787fdf</td>\n",
+       "      <td>14781541.0</td>\n",
+       "      <td>64426054.0</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>Plantae</td>\n",
+       "      <td>Tracheophyta</td>\n",
+       "      <td>Magnoliopsida</td>\n",
+       "      <td>Asterales</td>\n",
+       "      <td>Asteraceae</td>\n",
+       "      <td>Aster</td>\n",
+       "      <td>novi-belgii x lanceolatus =</td>\n",
+       "      <td>Aster novi-belgii x lanceolatus =</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3722542</th>\n",
+       "      <td>train</td>\n",
+       "      <td>1a5ace13-3c10-4053-9578-8ef08bac2014</td>\n",
+       "      <td>14781535.0</td>\n",
+       "      <td>64426054.0</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>Plantae</td>\n",
+       "      <td>Tracheophyta</td>\n",
+       "      <td>Magnoliopsida</td>\n",
+       "      <td>Asterales</td>\n",
+       "      <td>Asteraceae</td>\n",
+       "      <td>Aster</td>\n",
+       "      <td>novi-belgii x lanceolatus =</td>\n",
+       "      <td>Aster novi-belgii x lanceolatus =</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1506130</th>\n",
+       "      <td>train</td>\n",
+       "      <td>cc38fb4f-80c7-456f-b0b6-d7d41445d050</td>\n",
+       "      <td>14826040.0</td>\n",
+       "      <td>64426000.0</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>Plantae</td>\n",
+       "      <td>Tracheophyta</td>\n",
+       "      <td>Magnoliopsida</td>\n",
+       "      <td>Caryophyllales</td>\n",
+       "      <td>Droseraceae</td>\n",
+       "      <td>Drosera</td>\n",
+       "      <td>rotundifolia x intermedia =</td>\n",
+       "      <td>Drosera rotundifolia x intermedia =</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3868943</th>\n",
+       "      <td>train</td>\n",
+       "      <td>bb75e112-3267-4471-baaa-dd037e5a89b0</td>\n",
+       "      <td>10828404.0</td>\n",
+       "      <td>56745261.0</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>Plantae</td>\n",
+       "      <td>Tracheophyta</td>\n",
+       "      <td>Magnoliopsida</td>\n",
+       "      <td>Brassicales</td>\n",
+       "      <td>Brassicaceae</td>\n",
+       "      <td>Rorippa</td>\n",
+       "      <td>austriaca x sylvestris</td>\n",
+       "      <td>Rorippa austriaca x sylvestris</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "         split                         treeoflife_id  eol_content_id  \\\n",
+       "2240145  train  adb05f6d-5203-4c35-b492-78cd9f787fdf      14781541.0   \n",
+       "3722542  train  1a5ace13-3c10-4053-9578-8ef08bac2014      14781535.0   \n",
+       "1506130  train  cc38fb4f-80c7-456f-b0b6-d7d41445d050      14826040.0   \n",
+       "3868943  train  bb75e112-3267-4471-baaa-dd037e5a89b0      10828404.0   \n",
+       "\n",
+       "         eol_page_id  bioscan_part bioscan_filename inat21_filename  \\\n",
+       "2240145   64426054.0           NaN              NaN             NaN   \n",
+       "3722542   64426054.0           NaN              NaN             NaN   \n",
+       "1506130   64426000.0           NaN              NaN             NaN   \n",
+       "3868943   56745261.0           NaN              NaN             NaN   \n",
+       "\n",
+       "        inat21_cls_name  inat21_cls_num  kingdom        phylum          class  \\\n",
+       "2240145             NaN             NaN  Plantae  Tracheophyta  Magnoliopsida   \n",
+       "3722542             NaN             NaN  Plantae  Tracheophyta  Magnoliopsida   \n",
+       "1506130             NaN             NaN  Plantae  Tracheophyta  Magnoliopsida   \n",
+       "3868943             NaN             NaN  Plantae  Tracheophyta  Magnoliopsida   \n",
+       "\n",
+       "                  order        family    genus                      species  \\\n",
+       "2240145       Asterales    Asteraceae    Aster  novi-belgii x lanceolatus =   \n",
+       "3722542       Asterales    Asteraceae    Aster  novi-belgii x lanceolatus =   \n",
+       "1506130  Caryophyllales   Droseraceae  Drosera  rotundifolia x intermedia =   \n",
+       "3868943     Brassicales  Brassicaceae  Rorippa       austriaca x sylvestris   \n",
+       "\n",
+       "                                      common  \n",
+       "2240145    Aster novi-belgii x lanceolatus =  \n",
+       "3722542    Aster novi-belgii x lanceolatus =  \n",
+       "1506130  Drosera rotundifolia x intermedia =  \n",
+       "3868943       Rorippa austriaca x sylvestris  "
+      ]
+     },
+     "execution_count": 6,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "df.loc[df[\"species\"].isin(hybrid_list)].sample(4)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "<class 'pandas.core.frame.DataFrame'>\n",
+      "Index: 1146 entries, 967163 to 10968858\n",
+      "Data columns (total 17 columns):\n",
+      " #   Column            Non-Null Count  Dtype  \n",
+      "---  ------            --------------  -----  \n",
+      " 0   split             1146 non-null   object \n",
+      " 1   treeoflife_id     1146 non-null   object \n",
+      " 2   eol_content_id    1146 non-null   float64\n",
+      " 3   eol_page_id       1146 non-null   float64\n",
+      " 4   bioscan_part      0 non-null      float64\n",
+      " 5   bioscan_filename  0 non-null      object \n",
+      " 6   inat21_filename   0 non-null      object \n",
+      " 7   inat21_cls_name   0 non-null      object \n",
+      " 8   inat21_cls_num    0 non-null      float64\n",
+      " 9   kingdom           851 non-null    object \n",
+      " 10  phylum            851 non-null    object \n",
+      " 11  class             851 non-null    object \n",
+      " 12  order             851 non-null    object \n",
+      " 13  family            855 non-null    object \n",
+      " 14  genus             1146 non-null   object \n",
+      " 15  species           1146 non-null   object \n",
+      " 16  common            1146 non-null   object \n",
+      "dtypes: float64(4), object(13)\n",
+      "memory usage: 161.2+ KB\n"
+     ]
+    }
+   ],
+   "source": [
+    "df.loc[df[\"species\"].isin(hybrid_list)].info(show_counts = True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "It looks like there are 1,146 hybrids which are all labeled at the genus level, and most (~850) have full taxonomic rank. They are _**all**_ from EOL (as expected).\n",
+    "\n",
+    "Let's get a better picture of the overall diversity, then we can reduced down the dataset."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "split                  2\n",
+       "treeoflife_id       1146\n",
+       "eol_content_id      1146\n",
+       "eol_page_id          198\n",
+       "bioscan_part           0\n",
+       "bioscan_filename       0\n",
+       "inat21_filename        0\n",
+       "inat21_cls_name        0\n",
+       "inat21_cls_num         0\n",
+       "kingdom                2\n",
+       "phylum                 3\n",
+       "class                  8\n",
+       "order                 33\n",
+       "family                55\n",
+       "genus                119\n",
+       "species              194\n",
+       "common               196\n",
+       "dtype: int64"
+      ]
+     },
+     "execution_count": 8,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "df.loc[df[\"species\"].isin(hybrid_list)].nunique()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 9,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "kingdom\n",
+      "Plantae     804\n",
+      "Animalia     47\n",
+      "Name: count, dtype: int64\n",
+      "\n",
+      "phylum\n",
+      "Tracheophyta    804\n",
+      "Mollusca         32\n",
+      "Chordata         15\n",
+      "Name: count, dtype: int64\n",
+      "\n",
+      "class\n",
+      "Magnoliopsida     746\n",
+      "Polypodiopsida     53\n",
+      "Gastropoda         32\n",
+      "Reptilia            6\n",
+      "Pinopsida           5\n",
+      "Teleostei           4\n",
+      "Aves                3\n",
+      "Mammalia            2\n",
+      "Name: count, dtype: int64\n",
+      "\n"
+     ]
+    }
+   ],
+   "source": [
+    "for taxa in [\"kingdom\", \"phylum\", \"class\"]:\n",
+    "    print(df.loc[df[\"species\"].isin(hybrid_list), taxa].value_counts())\n",
+    "    print()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "The vast majority of our hybrids here are plants.\n",
+    "\n",
+    "Let's reduce the dataset down to only images in the genera for which we have hybrids (since they're all labeled at that level), then we'll save that CSV and run some more information through."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "119"
+      ]
+     },
+     "execution_count": 10,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "hybrid_genera = [genus for genus in list(df.loc[df[\"species\"].isin(hybrid_list), \"genus\"].unique())]\n",
+    "len(hybrid_genera)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 11,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "<class 'pandas.core.frame.DataFrame'>\n",
+      "Index: 415870 entries, 956721 to 11021624\n",
+      "Data columns (total 17 columns):\n",
+      " #   Column            Non-Null Count   Dtype  \n",
+      "---  ------            --------------   -----  \n",
+      " 0   split             415870 non-null  object \n",
+      " 1   treeoflife_id     415870 non-null  object \n",
+      " 2   eol_content_id    261349 non-null  float64\n",
+      " 3   eol_page_id       261349 non-null  float64\n",
+      " 4   bioscan_part      0 non-null       float64\n",
+      " 5   bioscan_filename  0 non-null       object \n",
+      " 6   inat21_filename   154521 non-null  object \n",
+      " 7   inat21_cls_name   154521 non-null  object \n",
+      " 8   inat21_cls_num    154521 non-null  float64\n",
+      " 9   kingdom           413726 non-null  object \n",
+      " 10  phylum            413726 non-null  object \n",
+      " 11  class             413726 non-null  object \n",
+      " 12  order             413632 non-null  object \n",
+      " 13  family            413815 non-null  object \n",
+      " 14  genus             415870 non-null  object \n",
+      " 15  species           409804 non-null  object \n",
+      " 16  common            415870 non-null  object \n",
+      "dtypes: float64(4), object(13)\n",
+      "memory usage: 57.1+ MB\n"
+     ]
+    }
+   ],
+   "source": [
+    "hybrid_catalog = df.loc[df[\"genus\"].isin(hybrid_genera)]\n",
+    "hybrid_catalog.info(show_counts = True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "We have almost 416K images to represent the genera for which we have 1,146 images of 194 different hybrids. These images are from both EOL and iNat21. Since we can't redistribute iNat21 images, we will have to remove the 155K there."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 12,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "<class 'pandas.core.frame.DataFrame'>\n",
+      "Index: 261349 entries, 956721 to 11000930\n",
+      "Data columns (total 17 columns):\n",
+      " #   Column            Non-Null Count   Dtype  \n",
+      "---  ------            --------------   -----  \n",
+      " 0   split             261349 non-null  object \n",
+      " 1   treeoflife_id     261349 non-null  object \n",
+      " 2   eol_content_id    261349 non-null  float64\n",
+      " 3   eol_page_id       261349 non-null  float64\n",
+      " 4   bioscan_part      0 non-null       float64\n",
+      " 5   bioscan_filename  0 non-null       object \n",
+      " 6   inat21_filename   0 non-null       object \n",
+      " 7   inat21_cls_name   0 non-null       object \n",
+      " 8   inat21_cls_num    0 non-null       float64\n",
+      " 9   kingdom           259205 non-null  object \n",
+      " 10  phylum            259205 non-null  object \n",
+      " 11  class             259205 non-null  object \n",
+      " 12  order             259111 non-null  object \n",
+      " 13  family            259294 non-null  object \n",
+      " 14  genus             261349 non-null  object \n",
+      " 15  species           255283 non-null  object \n",
+      " 16  common            261349 non-null  object \n",
+      "dtypes: float64(4), object(13)\n",
+      "memory usage: 35.9+ MB\n"
+     ]
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog = hybrid_catalog.loc[hybrid_catalog[\"eol_content_id\"].notna()]\n",
+    "eol_hybrid_catalog.info(show_counts = True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "So we have about 261K images.\n",
+    "\n",
+    "Remove extra columns and save to CSV for further analysis."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 13,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "['treeoflife_id',\n",
+       " 'eol_content_id',\n",
+       " 'eol_page_id',\n",
+       " 'kingdom',\n",
+       " 'phylum',\n",
+       " 'class',\n",
+       " 'order',\n",
+       " 'family',\n",
+       " 'genus',\n",
+       " 'species',\n",
+       " 'common']"
+      ]
+     },
+     "execution_count": 13,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "cols_to_keep = [col for col in list(eol_hybrid_catalog.columns)[1:] if col not in list(eol_hybrid_catalog.columns)[4:9]]\n",
+    "cols_to_keep"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 14,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "eol_hybrid_catalog = eol_hybrid_catalog[cols_to_keep]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 15,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "<class 'pandas.core.frame.DataFrame'>\n",
+      "Index: 261349 entries, 956721 to 11000930\n",
+      "Data columns (total 11 columns):\n",
+      " #   Column          Non-Null Count   Dtype  \n",
+      "---  ------          --------------   -----  \n",
+      " 0   treeoflife_id   261349 non-null  object \n",
+      " 1   eol_content_id  261349 non-null  float64\n",
+      " 2   eol_page_id     261349 non-null  float64\n",
+      " 3   kingdom         259205 non-null  object \n",
+      " 4   phylum          259205 non-null  object \n",
+      " 5   class           259205 non-null  object \n",
+      " 6   order           259111 non-null  object \n",
+      " 7   family          259294 non-null  object \n",
+      " 8   genus           261349 non-null  object \n",
+      " 9   species         255283 non-null  object \n",
+      " 10  common          261349 non-null  object \n",
+      "dtypes: float64(2), object(9)\n",
+      "memory usage: 23.9+ MB\n"
+     ]
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.info()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 16,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "treeoflife_id     261349\n",
+       "eol_content_id    261349\n",
+       "eol_page_id        13577\n",
+       "kingdom                3\n",
+       "phylum                 5\n",
+       "class                 13\n",
+       "order                 43\n",
+       "family                73\n",
+       "genus                119\n",
+       "species             8331\n",
+       "common             10927\n",
+       "dtype: int64"
+      ]
+     },
+     "execution_count": 16,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.nunique()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 17,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "kingdom\n",
+       "Plantae     236711\n",
+       "Animalia     22471\n",
+       "Protozoa        23\n",
+       "Name: count, dtype: int64"
+      ]
+     },
+     "execution_count": 17,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.kingdom.value_counts()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 18,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "treeoflife_id     23\n",
+       "eol_content_id    23\n",
+       "eol_page_id        5\n",
+       "kingdom            1\n",
+       "phylum             1\n",
+       "class              2\n",
+       "order              2\n",
+       "family             1\n",
+       "genus              1\n",
+       "species            3\n",
+       "common             4\n",
+       "dtype: int64"
+      ]
+     },
+     "execution_count": 18,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.loc[eol_hybrid_catalog[\"kingdom\"] == \"Protozoa\"].nunique()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Check for these species as parent species."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 19,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "protazoa = [species for species in list(eol_hybrid_catalog.loc[eol_hybrid_catalog[\"kingdom\"] == \"Protozoa\", \"species\"].dropna().unique())]\n",
+    "for species in protazoa:\n",
+    "    for hybrid in hybrid_list:\n",
+    "        if str(species) in hybrid:\n",
+    "            print(species)\n",
+    "            print(hybrid)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "The parent species added in an additional two phyla and more lower-order ranks. Some of this is a byproduct of homonymy, so we'll reduce down by species name as well.\n",
+    "\n",
+    "So, we'll actually generate a list of parent species and further pull out these, especially since we've increased our `kingdom` count with a `kingdom` that doesn't have hybrids."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 20,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "8138"
+      ]
+     },
+     "execution_count": 20,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "full_list_species = list(eol_hybrid_catalog.loc[~eol_hybrid_catalog[\"species\"].isin(hybrid_list), \"species\"].unique())\n",
+    "len(full_list_species)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 21,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "full_list_species = [str(species) for species in eol_hybrid_catalog.species.dropna().unique()]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 22,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "['jovis', 'turbinata', 'tetragonum', '×saulii', 'neocaledonica']"
+      ]
+     },
+     "execution_count": 22,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "full_list_species[:5]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 23,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "We should have 557 entries for 288 unique parent species.\n"
+     ]
+    }
+   ],
+   "source": [
+    "parent_species = []\n",
+    "for species in full_list_species:\n",
+    "    for hybrid in hybrid_list:\n",
+    "        if f\"{str(species)} \" in hybrid or f\" {str(species)}\" in hybrid:\n",
+    "            parent_species.append(str(species))\n",
+    "\n",
+    "print(f\"We should have {len(parent_species)} entries for {len(set(parent_species))} unique parent species.\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 24,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "<class 'pandas.core.frame.DataFrame'>\n",
+      "Index: 47124 entries, 956837 to 10998978\n",
+      "Data columns (total 11 columns):\n",
+      " #   Column          Non-Null Count  Dtype  \n",
+      "---  ------          --------------  -----  \n",
+      " 0   treeoflife_id   47124 non-null  object \n",
+      " 1   eol_content_id  47124 non-null  float64\n",
+      " 2   eol_page_id     47124 non-null  float64\n",
+      " 3   kingdom         46820 non-null  object \n",
+      " 4   phylum          46820 non-null  object \n",
+      " 5   class           46820 non-null  object \n",
+      " 6   order           46814 non-null  object \n",
+      " 7   family          46824 non-null  object \n",
+      " 8   genus           47124 non-null  object \n",
+      " 9   species         47124 non-null  object \n",
+      " 10  common          47124 non-null  object \n",
+      "dtypes: float64(2), object(9)\n",
+      "memory usage: 4.3+ MB\n"
+     ]
+    }
+   ],
+   "source": [
+    "parent_hybrid_cat = eol_hybrid_catalog.loc[(eol_hybrid_catalog[\"species\"].isin(hybrid_list)) | (eol_hybrid_catalog[\"species\"].isin(parent_species))]\n",
+    "parent_hybrid_cat.info()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 25,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "treeoflife_id     47124\n",
+       "eol_content_id    47124\n",
+       "eol_page_id        1491\n",
+       "kingdom               2\n",
+       "phylum                4\n",
+       "class                11\n",
+       "order                41\n",
+       "family               70\n",
+       "genus               119\n",
+       "species             481\n",
+       "common              977\n",
+       "dtype: int64"
+      ]
+     },
+     "execution_count": 25,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "parent_hybrid_cat.nunique()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "We still have an extra phyla down, which may be a product of the genera that weren't labled higher being added in, though we should check these extras match with those and aren't homonyms of the others."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 26,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "phylum\n",
+       "Tracheophyta    42267\n",
+       "Chordata         3861\n",
+       "Mollusca          458\n",
+       "Arthropoda        234\n",
+       "Name: count, dtype: int64"
+      ]
+     },
+     "execution_count": 26,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "parent_hybrid_cat.phylum.value_counts()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "It looks like we probably captured the proper subset now...Arthropoda has butterflies, some of which seem mis-labeled higher up."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Great, let's check the one extra phylum now."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "These likely are accurate since butterflies are in the phylum `Arthropoda`."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 27,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "treeoflife_id     1648\n",
+       "eol_content_id    1648\n",
+       "eol_page_id        157\n",
+       "kingdom              1\n",
+       "phylum               1\n",
+       "class                1\n",
+       "order                3\n",
+       "family               4\n",
+       "genus                4\n",
+       "species            131\n",
+       "common             134\n",
+       "dtype: int64"
+      ]
+     },
+     "execution_count": 27,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.loc[eol_hybrid_catalog[\"phylum\"] == \"Arthropoda\"].nunique()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 28,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "family\n",
+      "Hesperiidae    779\n",
+      "Sphecidae      567\n",
+      "Erebidae       280\n",
+      "Tingidae        22\n",
+      "Name: count, dtype: int64\n",
+      "\n",
+      "genus\n",
+      "Viola        779\n",
+      "Ammophila    567\n",
+      "Laelia       280\n",
+      "Ulmus         22\n",
+      "Name: count, dtype: int64\n"
+     ]
+    }
+   ],
+   "source": [
+    "print(eol_hybrid_catalog.loc[eol_hybrid_catalog[\"phylum\"] == \"Arthropoda\", \"family\"].value_counts())\n",
+    "print()\n",
+    "print(eol_hybrid_catalog.loc[eol_hybrid_catalog[\"phylum\"] == \"Arthropoda\", \"genus\"].value_counts())"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 29,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>treeoflife_id</th>\n",
+       "      <th>eol_content_id</th>\n",
+       "      <th>eol_page_id</th>\n",
+       "      <th>kingdom</th>\n",
+       "      <th>phylum</th>\n",
+       "      <th>class</th>\n",
+       "      <th>order</th>\n",
+       "      <th>family</th>\n",
+       "      <th>genus</th>\n",
+       "      <th>species</th>\n",
+       "      <th>common</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>2905374</th>\n",
+       "      <td>b2382090-4793-434d-b588-b97df797ba13</td>\n",
+       "      <td>8817503.0</td>\n",
+       "      <td>49952851.0</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>lobata</td>\n",
+       "      <td>pine violet</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>7925784</th>\n",
+       "      <td>b317e17a-a5ff-4fcc-9cdc-161cc437028c</td>\n",
+       "      <td>14011714.0</td>\n",
+       "      <td>62636336.0</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>riviniana</td>\n",
+       "      <td>common dog-violet</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>9434535</th>\n",
+       "      <td>0b970407-54d5-4ba6-9f72-c52c8e4d9c52</td>\n",
+       "      <td>8968367.0</td>\n",
+       "      <td>49957031.0</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>purpurea</td>\n",
+       "      <td>goosefoot violet</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>5851991</th>\n",
+       "      <td>649c8ec6-2eef-480c-8b01-3de431cd2d97</td>\n",
+       "      <td>14011710.0</td>\n",
+       "      <td>62636336.0</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>riviniana</td>\n",
+       "      <td>common dog-violet</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2645634</th>\n",
+       "      <td>14bb7ec5-7fe0-4f36-9d5d-e8684695a8a6</td>\n",
+       "      <td>8804533.0</td>\n",
+       "      <td>49952482.0</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>blanda</td>\n",
+       "      <td>sweet white violet</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4147908</th>\n",
+       "      <td>abb52e06-7a4c-473e-a251-775192d985d2</td>\n",
+       "      <td>21181429.0</td>\n",
+       "      <td>186119.0</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>minor</td>\n",
+       "      <td>Viola minor</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2362509</th>\n",
+       "      <td>4544d1f9-8c85-4b27-83e5-09044b34e954</td>\n",
+       "      <td>8757030.0</td>\n",
+       "      <td>49951271.0</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>wittrockiana</td>\n",
+       "      <td>hybrid violet</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "                                treeoflife_id  eol_content_id  eol_page_id  \\\n",
+       "2905374  b2382090-4793-434d-b588-b97df797ba13       8817503.0   49952851.0   \n",
+       "7925784  b317e17a-a5ff-4fcc-9cdc-161cc437028c      14011714.0   62636336.0   \n",
+       "9434535  0b970407-54d5-4ba6-9f72-c52c8e4d9c52       8968367.0   49957031.0   \n",
+       "5851991  649c8ec6-2eef-480c-8b01-3de431cd2d97      14011710.0   62636336.0   \n",
+       "2645634  14bb7ec5-7fe0-4f36-9d5d-e8684695a8a6       8804533.0   49952482.0   \n",
+       "4147908  abb52e06-7a4c-473e-a251-775192d985d2      21181429.0     186119.0   \n",
+       "2362509  4544d1f9-8c85-4b27-83e5-09044b34e954       8757030.0   49951271.0   \n",
+       "\n",
+       "          kingdom      phylum    class        order       family  genus  \\\n",
+       "2905374  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "7925784  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "9434535  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "5851991  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "2645634  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "4147908  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "2362509  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "\n",
+       "              species              common  \n",
+       "2905374        lobata         pine violet  \n",
+       "7925784     riviniana   common dog-violet  \n",
+       "9434535      purpurea    goosefoot violet  \n",
+       "5851991     riviniana   common dog-violet  \n",
+       "2645634        blanda  sweet white violet  \n",
+       "4147908         minor         Viola minor  \n",
+       "2362509  wittrockiana       hybrid violet  "
+      ]
+     },
+     "execution_count": 29,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.loc[(eol_hybrid_catalog[\"phylum\"] == \"Arthropoda\") & (eol_hybrid_catalog[\"genus\"] == \"Viola\")].sample(7)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 30,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "50"
+      ]
+     },
+     "execution_count": 30,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.loc[(eol_hybrid_catalog[\"phylum\"] == \"Arthropoda\") & (eol_hybrid_catalog[\"genus\"] == \"Viola\"), \"species\"].nunique()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "look at actual images"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 31,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "eol_hybrid_catalog = eol_hybrid_catalog.astype({\"eol_content_id\": \"int64\", \"eol_page_id\": \"int64\"})"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 32,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "eol_hybrid_catalog[\"filename\"] = eol_hybrid_catalog[\"eol_content_id\"].astype(str) + \"_\" + eol_hybrid_catalog[\"eol_page_id\"].astype(str) + \"_eol-full-size-copy.jpg\""
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 34,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>treeoflife_id</th>\n",
+       "      <th>eol_content_id</th>\n",
+       "      <th>eol_page_id</th>\n",
+       "      <th>kingdom</th>\n",
+       "      <th>phylum</th>\n",
+       "      <th>class</th>\n",
+       "      <th>order</th>\n",
+       "      <th>family</th>\n",
+       "      <th>genus</th>\n",
+       "      <th>species</th>\n",
+       "      <th>common</th>\n",
+       "      <th>filename</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>9945290</th>\n",
+       "      <td>1ae66dcb-84c5-43ff-ab66-0faee923635a</td>\n",
+       "      <td>29906970</td>\n",
+       "      <td>65415246</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>×williamsii</td>\n",
+       "      <td>Viola ×williamsii</td>\n",
+       "      <td>29906970_65415246_eol-full-size-copy.jpg</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>6788354</th>\n",
+       "      <td>875156a5-5811-4069-ab8d-ee51c0ae0454</td>\n",
+       "      <td>8791997</td>\n",
+       "      <td>49952170</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>chamissoniana</td>\n",
+       "      <td>olopu</td>\n",
+       "      <td>8791997_49952170_eol-full-size-copy.jpg</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4280132</th>\n",
+       "      <td>3f4286e5-b5d7-4533-9130-ef5d15a1c048</td>\n",
+       "      <td>8922943</td>\n",
+       "      <td>49955771</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>purpurea</td>\n",
+       "      <td>goosefoot violet</td>\n",
+       "      <td>8922943_49955771_eol-full-size-copy.jpg</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1338393</th>\n",
+       "      <td>489863d2-3c59-4442-96e6-900b45f5ac24</td>\n",
+       "      <td>8756992</td>\n",
+       "      <td>49951271</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>wittrockiana</td>\n",
+       "      <td>hybrid violet</td>\n",
+       "      <td>8756992_49951271_eol-full-size-copy.jpg</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2362509</th>\n",
+       "      <td>4544d1f9-8c85-4b27-83e5-09044b34e954</td>\n",
+       "      <td>8757030</td>\n",
+       "      <td>49951271</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>wittrockiana</td>\n",
+       "      <td>hybrid violet</td>\n",
+       "      <td>8757030_49951271_eol-full-size-copy.jpg</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>5200572</th>\n",
+       "      <td>e8190144-9033-4998-92be-ae278e4baedb</td>\n",
+       "      <td>29907020</td>\n",
+       "      <td>65415246</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>×williamsii</td>\n",
+       "      <td>Viola ×williamsii</td>\n",
+       "      <td>29907020_65415246_eol-full-size-copy.jpg</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3721955</th>\n",
+       "      <td>7bf000bb-8f79-44ec-b7e2-c21922607a41</td>\n",
+       "      <td>22255430</td>\n",
+       "      <td>64639830</td>\n",
+       "      <td>Animalia</td>\n",
+       "      <td>Arthropoda</td>\n",
+       "      <td>Insecta</td>\n",
+       "      <td>Lepidoptera</td>\n",
+       "      <td>Hesperiidae</td>\n",
+       "      <td>Viola</td>\n",
+       "      <td>eriocarpon</td>\n",
+       "      <td>Viola eriocarpon</td>\n",
+       "      <td>22255430_64639830_eol-full-size-copy.jpg</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "                                treeoflife_id  eol_content_id  eol_page_id  \\\n",
+       "9945290  1ae66dcb-84c5-43ff-ab66-0faee923635a        29906970     65415246   \n",
+       "6788354  875156a5-5811-4069-ab8d-ee51c0ae0454         8791997     49952170   \n",
+       "4280132  3f4286e5-b5d7-4533-9130-ef5d15a1c048         8922943     49955771   \n",
+       "1338393  489863d2-3c59-4442-96e6-900b45f5ac24         8756992     49951271   \n",
+       "2362509  4544d1f9-8c85-4b27-83e5-09044b34e954         8757030     49951271   \n",
+       "5200572  e8190144-9033-4998-92be-ae278e4baedb        29907020     65415246   \n",
+       "3721955  7bf000bb-8f79-44ec-b7e2-c21922607a41        22255430     64639830   \n",
+       "\n",
+       "          kingdom      phylum    class        order       family  genus  \\\n",
+       "9945290  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "6788354  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "4280132  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "1338393  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "2362509  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "5200572  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "3721955  Animalia  Arthropoda  Insecta  Lepidoptera  Hesperiidae  Viola   \n",
+       "\n",
+       "               species             common  \\\n",
+       "9945290    ×williamsii  Viola ×williamsii   \n",
+       "6788354  chamissoniana              olopu   \n",
+       "4280132       purpurea   goosefoot violet   \n",
+       "1338393   wittrockiana      hybrid violet   \n",
+       "2362509   wittrockiana      hybrid violet   \n",
+       "5200572    ×williamsii  Viola ×williamsii   \n",
+       "3721955     eriocarpon   Viola eriocarpon   \n",
+       "\n",
+       "                                         filename  \n",
+       "9945290  29906970_65415246_eol-full-size-copy.jpg  \n",
+       "6788354   8791997_49952170_eol-full-size-copy.jpg  \n",
+       "4280132   8922943_49955771_eol-full-size-copy.jpg  \n",
+       "1338393   8756992_49951271_eol-full-size-copy.jpg  \n",
+       "2362509   8757030_49951271_eol-full-size-copy.jpg  \n",
+       "5200572  29907020_65415246_eol-full-size-copy.jpg  \n",
+       "3721955  22255430_64639830_eol-full-size-copy.jpg  "
+      ]
+     },
+     "execution_count": 34,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.loc[(eol_hybrid_catalog[\"phylum\"] == \"Arthropoda\") & (eol_hybrid_catalog[\"genus\"] == \"Viola\")].sample(7)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Save CSV of `eol_hybrid_catalog` as snapshot of these issues. A collection of sample images gathered from here will also be included."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 37,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "eol_hybrid_catalog.to_csv(DATA_PATH + \"taxa_files/ToL_hybrids_Arthropoda.csv\", index = False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "These seem to have a mis-match at the genus-family connection. These genera seem to be plants (other than Ammophila, which is wasps)."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 40,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "arthropoda = [species for species in list(eol_hybrid_catalog.loc[eol_hybrid_catalog[\"phylum\"] == \"Arthropoda\", \"species\"].unique())]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 41,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "We have 13 parent species for 24 hybrids.\n"
+     ]
+    }
+   ],
+   "source": [
+    "arthropoda_hybrids = []\n",
+    "arthropoda_hybrid_parents = []\n",
+    "\n",
+    "for species in arthropoda:\n",
+    "    for hybrid in hybrid_list:\n",
+    "        if f\"{species} \" in hybrid or f\" {species}\" in hybrid:\n",
+    "            arthropoda_hybrids.append(hybrid)\n",
+    "            arthropoda_hybrid_parents.append(species)\n",
+    "\n",
+    "print(f\"We have {len(set(arthropoda_hybrid_parents))} parent species for {len(set(arthropoda_hybrids))} hybrids.\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 42,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{'alba',\n",
+       " 'anceps',\n",
+       " 'canadensis',\n",
+       " 'canina',\n",
+       " 'gigantea',\n",
+       " 'glabra',\n",
+       " 'lobata',\n",
+       " 'nigra',\n",
+       " 'nigricans',\n",
+       " 'pubescens',\n",
+       " 'purpurata',\n",
+       " 'purpurea',\n",
+       " 'sylvestris'}"
+      ]
+     },
+     "execution_count": 42,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "set(arthropoda_hybrid_parents)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 43,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{'alba x alba',\n",
+       " 'alba x dioica',\n",
+       " 'alba x pubescens',\n",
+       " 'anceps x articulatus',\n",
+       " 'aurita x nigricans',\n",
+       " 'austriaca x sylvestris',\n",
+       " 'canina x persicifolia =',\n",
+       " 'colmarie x rhynchostylis gigantea red',\n",
+       " 'euxina x alba =',\n",
+       " 'ferrugineus x nigricans',\n",
+       " 'formosa x pubescens',\n",
+       " 'gigantea x vanda tessellata',\n",
+       " 'glabra x nitens',\n",
+       " 'leucopsis x canadensis',\n",
+       " 'lobata x quercus berberidifolia',\n",
+       " 'nana x pubescens',\n",
+       " 'nigra x trinervis',\n",
+       " 'nigricans x phylicifolia',\n",
+       " 'pendula x pubescens =',\n",
+       " 'purpurata suavis sissi x purpurata',\n",
+       " 'purpurea x simia =',\n",
+       " 'purpurea x viminalis',\n",
+       " 'sylvestris x amphibia =',\n",
+       " 'tenebrosa x purpurata alba'}"
+      ]
+     },
+     "execution_count": 43,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "set(arthropoda_hybrids)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 44,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "False"
+      ]
+     },
+     "execution_count": 44,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "\"euxina\" in set(arthropoda)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Both Salix and Dactylorhiza have species named \"euxina\". These are [plant genera](https://www.google.com/search?sca_esv=599157406&rlz=1C5CHFA_en___US1054&q=Salix+euxina&si=AKbGX_rO4P19IF_yO85wYpkEaz-W_oZWd5JUOOVnUVftf2aeob4EJjgqVllzSPxogeqSJCC4Zl8aXZbE51z70gOwz9lGuA0G1-yf7zcOgQX3XaBgMVlhgthMWR2cawrX1KYe34gkcEi4rg9HRHMQbxrrKmzPRVIvd0aODauTmZAgZBvGSlxrFCuIDT43Pt1slf-KM5Ea9k0U4xty1e_U_flApg9yiVpHTU-vu-M1TsHSj1gae0rq-B6iatHBbob7iyGAEZaUMTN_xh3ubpaTXcZ3suZvlRw_X-tP8HMalBz6NTDqG2WbmeRnzg8IpcCSe97jgSAbEAoE&sa=X&sqi=2&ved=2ahUKEwjT6tar5eSDAxW-lIkEHbIAC1sQxA16BAhKEAU&biw=1647&bih=909&dpr=1) that have hybrids in our sample set."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "It's odd to see an `alba x alba`, wouldn't that just be `alba`?\n",
+    "\n",
+    "see below."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 66,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>treeoflife_id</th>\n",
+       "      <th>eol_content_id</th>\n",
+       "      <th>eol_page_id</th>\n",
+       "      <th>kingdom</th>\n",
+       "      <th>phylum</th>\n",
+       "      <th>class</th>\n",
+       "      <th>order</th>\n",
+       "      <th>family</th>\n",
+       "      <th>genus</th>\n",
+       "      <th>species</th>\n",
+       "      <th>common</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>5518363</th>\n",
+       "      <td>94c1b92c-3d2c-4253-9cba-d3c2d361082b</td>\n",
+       "      <td>28749458.0</td>\n",
+       "      <td>65060415.0</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>NaN</td>\n",
+       "      <td>S.</td>\n",
+       "      <td>alba x alba</td>\n",
+       "      <td>S. alba x alba</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "                                treeoflife_id  eol_content_id  eol_page_id  \\\n",
+       "5518363  94c1b92c-3d2c-4253-9cba-d3c2d361082b      28749458.0   65060415.0   \n",
+       "\n",
+       "        kingdom phylum class order family genus      species          common  \n",
+       "5518363     NaN    NaN   NaN   NaN    NaN    S.  alba x alba  S. alba x alba  "
+      ]
+     },
+     "execution_count": 66,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "eol_hybrid_catalog.loc[eol_hybrid_catalog[\"species\"] == \"alba x alba\"]"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Looking at the actual [image](https://eol.org/pages/65060415/media) this is a variety, not a hybrid (and definitely not `alba x alba`).\n",
+    "\n",
+    "It seems there is a lot of overlap in species naming across the plant genera, so we need to be more careful in distinguishing parent species. "
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Check Genus and Species against Hybrid Genus Species to Subset\n",
+    "\n",
+    "Due to common reuse of species names across genera for plants (the majority of our hybrids), we need to check both the genus and the species name against the genus and species of our hybrids when making the parent list."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 67,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "eol_hybrid_catalog[\"sci_name\"] = eol_hybrid_catalog[\"genus\"] + \" \" + eol_hybrid_catalog[\"species\"]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "std",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.11.3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}