Fix: TOL-200M Catalog Metadata Alignment

README.md

@@ -306,9 +306,9 @@ The [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M
 
 #### Source Data Producers
 
-- **Images:** [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M), aggregated from [GBIF](https://www.gbif.org/), [EOL](https://eol.org/), [BIOSCAN-5M](https://github.com/bioscan-ml/BIOSCAN-5M), and [FathomNet](https://www.fathomnet.org/).
+- **Images:** [TreeOfLife-200M revision 94bbc0b](https://huggingface.co/datasets/imageomics/TreeOfLife-200M/commit/94bbc0b90cd26cbb15f94d3144941026f4b41213), aggregated from [GBIF](https://www.gbif.org/), [EOL](https://eol.org/), [BIOSCAN-5M](https://github.com/bioscan-ml/BIOSCAN-5M), and [FathomNet](https://www.fathomnet.org/).
 - **Taxonomic metadata:** Standardized using [TaxonoPy](https://github.com/Imageomics/TaxonoPy).
-- **Other metadata:** For instance, publisher, basis of record, image URLs, source IDs are inherited from the respective data sources via the [TreeOfLife-200M catalog](https://huggingface.co/datasets/imageomics/TreeOfLife-200M).
+- **Other metadata:** For instance, publisher, basis of record, image URLs, source IDs are inherited from the respective data sources via the [TreeOfLife-200M catalog revision 94bbc0b](https://huggingface.co/datasets/imageomics/TreeOfLife-200M/commit/94bbc0b90cd26cbb15f94d3144941026f4b41213).
 
 ### Annotations
 
@@ -372,15 +372,30 @@ Please also cite the source dataset and embedding model (include data sources as
 **TreeOfLife-200M:**
 ```bibtex
 @dataset{treeoflife_200m,
-  title = {{T}ree{O}f{L}ife-200{M} (Revision a8f38b4)}, 
+  title = {{T}ree{O}f{L}ife-200{M} (Revision 94bbc0b)}, 
   author = {Jianyang Gu and Samuel Stevens and Elizabeth G Campolongo and Matthew J Thompson and Net Zhang and Jiaman Wu and Andrei Kopanev and Zheda Mai and Alexander E. White and James Balhoff and Wasila M Dahdul and Daniel Rubenstein and Hilmar Lapp and Tanya Berger-Wolf and Wei-Lun Chao and Yu Su},
   year = {2025},
   url = {https://huggingface.co/datasets/imageomics/TreeOfLife-200M},
-  doi = {10.57967/hf/6786},
+  doi = {10.57967/hf/8980},
   publisher = {Hugging Face}
 }
 ```
 
+**BioCLIP 2 Paper:**
+```bibtex
+@inproceedings{NEURIPS2025_94da80cb,
+ author = {Gu, Jianyang and Stevens, Sam and Campolongo, Elizabeth and Thompson, Matthew and Zhang, Net and Wu, Jiaman and Kopanev, Andrei and Mai, Zheda and White, Alexander and Balhoff, James and Dahdul, Wasila and Rubenstein, Daniel and Lapp, Hilmar and Berger-Wolf, Tanya and Chao, Wei-Lun (Harry) and Su, Yu},
+ booktitle = {Advances in Neural Information Processing Systems},
+ editor = {D. Belgrave and C. Zhang and H. Lin and R. Pascanu and P. Koniusz and M. Ghassemi and N. Chen},
+ pages = {102778--102811},
+ publisher = {Curran Associates, Inc.},
+ title = {BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive Learning},
+ url = {https://proceedings.neurips.cc/paper_files/paper/2025/file/94da80cbfe870c1db958c88a8a27018c-Paper-Conference.pdf},
+ volume = {38},
+ year = {2025}
+}
+```
+
 **BioCLIP 2:**
 ```bibtex
 @article{gu2025bioclip,

bioclip-2_float16/train-00182-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:bc81284e8892344f9b0ecf77e5ace35d59f695943b21bb15c05607552e793bee
-size 520652146
+oid sha256:4837edab59c63bc28aabab1a261e26b4c6629ed18c8d3e312097d33b0b7a40ad
+size 518952524

bioclip-2_float16/train-00189-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:7920f2d2f0981493a4c6fe0ffa8ba749987640f79766be566dca255353db2b48
-size 518792769
+oid sha256:f8f49d9926914e5f3d0a7a01def169d8fd1daaaf368527a38249150dfa287e25
+size 517401236

bioclip-2_float16/train-00292-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:44e86b96ed3cb6bb4649e987146acd20b59558dbe4ea3b6a716adb82254fb424
-size 518946157
+oid sha256:2d659f5d0e8de62dbfbbd5622595e91629be0379be755dd6d2537db66eb26f76
+size 517657643

bioclip-2_float16/train-00293-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:721ec84639646522be6f0bdd0827ce29a3434ddb2acbefb0aa42a1313ba58a38
-size 517820248
+oid sha256:8e3da7ef69b4f2ced896861b4bd6256238b4938c05cd1849b54020e62b68b4d3
+size 516193391

bioclip-2_float16/train-00294-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:fafc7f0ed6154fe500bd662217677ac5386c6fdb13986952971a0304d2119c80
-size 520004154
+oid sha256:b2e13a8fd268e2b7d81e502bb8aaaec09b349cb31a563b37598a776afd742328
+size 518635486

bioclip-2_float16/train-00307-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:d448741b34cef7e49d2f4a629c15cef65ef21c79d6aa8ddcf598693951fa5b75
-size 518836406
+oid sha256:43f232c401aa1960e59f62909497e3054b656c8d88b69bd124fe4e847b422bcd
+size 517396569

bioclip-2_float16/train-00308-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:a2a4c0f607d0a055bc59c04e65e6bc602a0d68dbf17a9aca3fef920c7aabaae4
-size 518750242
+oid sha256:da4ccfabcd4b5e83353aba9dc7f4eb7b838708eba7e07ad19ae83ba9eeb443aa
+size 517253766

bioclip-2_float16/train-00309-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:6cfe75bd929b2b2658abe556721ddf7c41b8d5e02f8543494ba59f7409bf3769
-size 518803129
+oid sha256:a5d4ab7ada2073153e72571a47f6123016ac0491bc58547dad7a6c6b85894ea8
+size 517484193

bioclip-2_float16/train-00310-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:37df7fe3e97ceae657a056b7caeee93affc11f9c147cf335dc663550014fb476
-size 519007933
+oid sha256:727660503360273b11ba19901cbb1c4f7e5f825bb0175a62eb5b093831c3d5a5
+size 517688831

bioclip-2_float16/train-00311-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:bb8735e7bb6db8807087cecdcae348d67e604b9d7f13af72f7dd38fd35524dc3
-size 518622118
+oid sha256:ed762a3313c6331d8f6c9546413f4e72a973982ac1a56ca0e4745b65adebfc4a
+size 517395758

bioclip-2_float16/train-00320-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:09a235e9ec2ca07eb5b55c38fd61784593ed8d7b6fa1d39c1a558be4537152d8
-size 518418709
+oid sha256:5dc217490a49936f62f40d13a2ebedacbaf12fbcd9b5d323f51414c923191272
+size 517138866

bioclip-2_float16/train-00322-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:d67400262f4e115f71e0b64614ae1a8eb8bbba57ad2088fc094dbcd077be6bb2
-size 518398228
+oid sha256:66854e893f6ded1827769774e57e0bac690ba0f1221424440b81c58a8dc61239
+size 517143933

bioclip-2_float16/train-00323-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:94c72f11bf29b2274d3cd2ec56e710501ac3a0d7aed77778afd742f7a4538d82
-size 518552732
+oid sha256:5cceb98bd887294e27438a7d506b730ed49e2f01923e2a724c3e3336d13e1fe4
+size 517206438

bioclip-2_float16/train-00662-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:f7896fc50d10b35ab8ff280711b57921582d5832e2267f438e039edd1ec911fe
-size 519824514
+oid sha256:3cda3a748c2e50c9403b4d99668ea3508fa57f46b988d2b1652bf04b6f9eda2b
+size 518511899

bioclip-2_float16/train-00663-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:c1fe42f3a4b1a2d63ad6346a2ffeb6bc0f0c4325ab3d6f42e333bd2e77706c45
-size 522255305
+oid sha256:d4ea5067925fcc20d31120a07a451f2880c6628df69444f2b62c845f346f0a04
+size 520880231

bioclip-2_float16/train-00664-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:aae3b226ceaa7f590240abdd85df6cfa744d35b2d661c2690ac2875c57b7f745
-size 522206456
+oid sha256:99f8c8b1ffe7d84e4f77737ceaa9a67841152b50540a7582611c600fac591a33
+size 520826662

bioclip-2_float16/train-00665-of-00666.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:454d8a10e052ae9bd48b4a590cb5278d478bcbc2ab50ff60f63d95db4a5355fb
-size 456525042
+oid sha256:17ee2704e8237de183121bd423cfbbc8db36138e0185ba19ffe1ff76769a7ad1
+size 455309548