Datasets:
Add subsets for image embeddings explorer demo
#8
by netzhang - opened
README.md
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@@ -73,6 +73,14 @@ configs:
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data_files:
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- split: train
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path: bioclip-2_float16/*.parquet
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---
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# TreeOfLife-200M Embeddings
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| Config | Model | Precision | Dimensions | Files | Size | Rows |
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|--------|-------|-----------|------------|-------|------|------|
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| `bioclip-2_float16` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 666 | ~346 GB | 233,055,986 |
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### Data Fields
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@@ -158,6 +175,22 @@ For more background on metadata columns, see the [TreeOfLife-200M data field des
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- **Precision:** config-dependent (see [Configs](#configs) table)
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- **File naming:** `train-00000-of-NNNNN.parquet` (count depends on config)
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### Data Splits
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Single `train` split containing all 233,055,986 rows.
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data_files:
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- split: train
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path: bioclip-2_float16/*.parquet
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- config_name: darwins_finches
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data_files:
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- split: train
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path: demo_subset/darwins_finches/bioclip-2_float16/*.parquet
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- config_name: wolf_sample
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data_files:
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- split: train
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path: demo_subset/wolf_sample/bioclip-2_float16/*.parquet
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---
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# TreeOfLife-200M Embeddings
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| Config | Model | Precision | Dimensions | Files | Size | Rows |
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|--------|-------|-----------|------------|-------|------|------|
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| `bioclip-2_float16` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 666 | ~346 GB | 233,055,986 |
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| `darwins_finches` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 1 | ~1 MB | 677 |
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| `wolf_sample` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 1 | ~1.5 MB | 960 |
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The `demo_subset/` directory contains small **curated subsets** of the full
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`bioclip-2_float16` TreeOfLife-200M embeddings, such as `darwins_finches` and
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`wolf_sample`. These subsets were curated for quick experiments, prototyping,
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and demos—for example the
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[Image Embedding Explorer](https://github.com/Imageomics/emb-explorer) demo—without
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downloading the full 200M embedding dataset.
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### Data Fields
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- **Precision:** config-dependent (see [Configs](#configs) table)
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- **File naming:** `train-00000-of-NNNNN.parquet` (count depends on config)
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Repository layout:
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```text
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TreeOfLife-200M-Embeddings/
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├── bioclip-2_float16/ # full dataset — 666 shards
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│ ├── train-00000-of-00666.parquet
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│ └── ...
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└── demo_subset/ # curated subsets for quick experiments / demos
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├── darwins_finches/
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│ └── bioclip-2_float16/
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│ └── emb_darwin_finches.parquet # 677 rows
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└── wolf_sample/
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└── bioclip-2_float16/
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└── emb_wolf_sample.parquet # 960 rows
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```
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### Data Splits
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Single `train` split containing all 233,055,986 rows.
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demo_subset/darwins_finches/bioclip-2_float16/emb_darwin_finches.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:bff4cbeec7c33c190bd1b74482c0b236bf5095901bc18f184434b9d54492342d
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size 1064441
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demo_subset/wolf_sample/bioclip-2_float16/emb_wolf_sample.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:46d5f7e1e3100351346ed0c1e274156d3730f7b5278d54da97a4b3551a590f35
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size 1501148
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