Add subsets for image embeddings explorer demo

#8
by netzhang - opened
README.md CHANGED
@@ -73,6 +73,14 @@ configs:
73
  data_files:
74
  - split: train
75
  path: bioclip-2_float16/*.parquet
 
 
 
 
 
 
 
 
76
  ---
77
 
78
  # TreeOfLife-200M Embeddings
@@ -125,6 +133,15 @@ ds = load_dataset("imageomics/TreeOfLife-200M-Embeddings", "bioclip-2_float16")
125
  | Config | Model | Precision | Dimensions | Files | Size | Rows |
126
  |--------|-------|-----------|------------|-------|------|------|
127
  | `bioclip-2_float16` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 666 | ~346 GB | 233,055,986 |
 
 
 
 
 
 
 
 
 
128
 
129
  ### Data Fields
130
 
@@ -158,6 +175,22 @@ For more background on metadata columns, see the [TreeOfLife-200M data field des
158
  - **Precision:** config-dependent (see [Configs](#configs) table)
159
  - **File naming:** `train-00000-of-NNNNN.parquet` (count depends on config)
160
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
161
  ### Data Splits
162
 
163
  Single `train` split containing all 233,055,986 rows.
 
73
  data_files:
74
  - split: train
75
  path: bioclip-2_float16/*.parquet
76
+ - config_name: darwins_finches
77
+ data_files:
78
+ - split: train
79
+ path: demo_subset/darwins_finches/bioclip-2_float16/*.parquet
80
+ - config_name: wolf_sample
81
+ data_files:
82
+ - split: train
83
+ path: demo_subset/wolf_sample/bioclip-2_float16/*.parquet
84
  ---
85
 
86
  # TreeOfLife-200M Embeddings
 
133
  | Config | Model | Precision | Dimensions | Files | Size | Rows |
134
  |--------|-------|-----------|------------|-------|------|------|
135
  | `bioclip-2_float16` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 666 | ~346 GB | 233,055,986 |
136
+ | `darwins_finches` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 1 | ~1 MB | 677 |
137
+ | `wolf_sample` | [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) (ViT-L/14) | float16 | 768 | 1 | ~1.5 MB | 960 |
138
+
139
+ The `demo_subset/` directory contains small **curated subsets** of the full
140
+ `bioclip-2_float16` TreeOfLife-200M embeddings, such as `darwins_finches` and
141
+ `wolf_sample`. These subsets were curated for quick experiments, prototyping,
142
+ and demos—for example the
143
+ [Image Embedding Explorer](https://github.com/Imageomics/emb-explorer) demo—without
144
+ downloading the full 200M embedding dataset.
145
 
146
  ### Data Fields
147
 
 
175
  - **Precision:** config-dependent (see [Configs](#configs) table)
176
  - **File naming:** `train-00000-of-NNNNN.parquet` (count depends on config)
177
 
178
+ Repository layout:
179
+
180
+ ```text
181
+ TreeOfLife-200M-Embeddings/
182
+ ├── bioclip-2_float16/ # full dataset — 666 shards
183
+ │ ├── train-00000-of-00666.parquet
184
+ │ └── ...
185
+ └── demo_subset/ # curated subsets for quick experiments / demos
186
+ ├── darwins_finches/
187
+ │ └── bioclip-2_float16/
188
+ │ └── emb_darwin_finches.parquet # 677 rows
189
+ └── wolf_sample/
190
+ └── bioclip-2_float16/
191
+ └── emb_wolf_sample.parquet # 960 rows
192
+ ```
193
+
194
  ### Data Splits
195
 
196
  Single `train` split containing all 233,055,986 rows.
demo_subset/darwins_finches/bioclip-2_float16/emb_darwin_finches.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bff4cbeec7c33c190bd1b74482c0b236bf5095901bc18f184434b9d54492342d
3
+ size 1064441
demo_subset/wolf_sample/bioclip-2_float16/emb_wolf_sample.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:46d5f7e1e3100351346ed0c1e274156d3730f7b5278d54da97a4b3551a590f35
3
+ size 1501148