| """Diffusion model for segmentation.""" |
|
|
| from __future__ import annotations |
|
|
| from dataclasses import dataclass |
|
|
| import jax.numpy as jnp |
| import jax.random |
|
|
| from imgx import EPS |
| from imgx.diffusion.gaussian.gaussian_diffusion import ( |
| GaussianDiffusion, |
| get_gaussian_diffusion_attributes, |
| ) |
| from imgx.diffusion.gaussian.sampler import DDIMSampler, DDPMSampler |
| from imgx.task.diffusion_segmentation.diffusion import DiffusionSegmentation |
|
|
|
|
| @dataclass |
| class GaussianDiffusionSegmentation(GaussianDiffusion, DiffusionSegmentation): |
| |
| """Class for segmentation diffusion sampling. |
| |
| x is probabilities scaled in [-1, 1]. |
| model_out is logits. |
| """ |
| classes_are_exclusive: bool |
|
|
| @classmethod |
| def create( |
| cls: type[GaussianDiffusionSegmentation], |
| num_timesteps: int, |
| num_timesteps_beta: int, |
| beta_schedule: str, |
| beta_start: float, |
| beta_end: float, |
| model_out_type: str, |
| model_var_type: str, |
| **kwargs, |
| ) -> GaussianDiffusionSegmentation: |
| """Create a new instance. |
| |
| Args: |
| num_timesteps: number of diffusion steps. |
| num_timesteps_beta: number of steps when defining beta schedule. |
| beta_schedule: schedule for betas. |
| beta_start: beta for t=0. |
| beta_end: beta for t=T. |
| model_out_type: type of model output. |
| model_var_type: type of variance for p(x_{t-1} | x_t). |
| kwargs: arguments, including classes_are_exclusive. |
| |
| Returns: |
| Instance of GaussianDiffusionSegmentation. |
| """ |
| |
| if model_out_type not in ["x_start", "noise"]: |
| raise ValueError( |
| f"Unknown DiffusionModelOutputType {model_out_type}, should be x_start or noise." |
| ) |
| if model_var_type not in [ |
| "fixed_small", |
| "fixed_large", |
| "learned", |
| "learned_range", |
| ]: |
| raise ValueError( |
| f"Unknown DiffusionModelVarianceType {model_var_type}," |
| f"should be fixed_small, fixed_large, learned or learned_range." |
| ) |
|
|
| |
| attr_dict = get_gaussian_diffusion_attributes( |
| num_timesteps=num_timesteps, |
| num_timesteps_beta=num_timesteps_beta, |
| beta_schedule=beta_schedule, |
| beta_start=beta_start, |
| beta_end=beta_end, |
| ) |
|
|
| return cls( |
| num_timesteps=num_timesteps, |
| noise_fn=jax.random.normal, |
| num_timesteps_beta=num_timesteps_beta, |
| beta_schedule=beta_schedule, |
| beta_start=beta_start, |
| beta_end=beta_end, |
| model_out_type=model_out_type, |
| model_var_type=model_var_type, |
| **attr_dict, |
| **kwargs, |
| ) |
|
|
| def model_out_to_x(self, model_out: jnp.ndarray) -> jnp.ndarray: |
| """Convert model outputs to x space. |
| |
| Args: |
| model_out: unnormalised values, |
| classes are assumed to be in the last axis. |
| shape = (..., num_classes). |
| |
| Returns: |
| Probabilities scaled to [-1, 1]. |
| """ |
| fn = jax.nn.softmax if self.classes_are_exclusive else jax.nn.sigmoid |
| x = fn(model_out) |
| x = x * 2.0 - 1.0 |
| return x |
|
|
| def mask_to_x(self, mask: jnp.ndarray) -> jnp.ndarray: |
| """Convert mask to x. |
| |
| Args: |
| mask: boolean segmentation mask, shape = (batch, ..., num_classes). |
| |
| Returns: |
| x, shape = (batch, ..., num_classes), of values in [-1, 1]. |
| """ |
| return mask * 2 - 1 |
|
|
| def x_to_mask(self, x: jnp.ndarray) -> jnp.ndarray: |
| """Convert x to mask. |
| |
| Args: |
| x: shape = (batch, ..., num_classes), of values in [-1, 1]. |
| |
| Returns: |
| boolean segmentation mask, shape = (batch, ..., num_classes). |
| """ |
| x = jnp.clip(x, -1.0, 1.0) |
| return (x + 1) / 2 |
|
|
| def x_to_logits(self, x: jnp.ndarray) -> jnp.ndarray: |
| """Convert x into model output space, which is logits. |
| |
| Args: |
| x: probabilities scaled to [-1, 1]. |
| |
| Returns: |
| unnormalised logits. |
| """ |
| probs = (x + 1) / 2 |
| probs = jnp.clip(probs, EPS, 1.0) |
| return jnp.log(probs) |
|
|
| def model_out_to_logits_start( |
| self, model_out: jnp.ndarray, x_t: jnp.ndarray, t_index: jnp.ndarray |
| ) -> jnp.ndarray: |
| """Convert model outputs to logits at time 0, noiseless. |
| |
| Args: |
| model_out: unnormalised values, |
| classes are assumed to be in the last axis. |
| shape = (..., num_classes). |
| x_t: label at time t of shape (..., num_classes). |
| t_index: time of shape (...,). |
| |
| Returns: |
| logits, shape = (..., num_classes). |
| """ |
| if self.model_out_type == "x_start": |
| |
| return model_out |
| if self.model_out_type == "noise": |
| x_start = self.predict_xstart_from_noise_xt(x_t=x_t, noise=model_out, t_index=t_index) |
| return self.x_to_logits(x_start) |
|
|
| raise ValueError(f"Unknown DiffusionModelOutputType {self.model_out_type}.") |
|
|
|
|
| @dataclass |
| class DDPMSegmentationSampler(GaussianDiffusionSegmentation, DDPMSampler): |
| """DDPM for segmentation.""" |
|
|
|
|
| @dataclass |
| class DDIMSegmentationSampler(GaussianDiffusionSegmentation, DDIMSampler): |
| """DDIM for segmentation.""" |
|
|