vcell / data /python-restclient /vcell_client /api /bio_model_resource_api.py
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Migrated from GitHub
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# coding: utf-8
"""
VCell API
VCell API
The version of the OpenAPI document: 1.0.1
Contact: vcell_support@uchc.com
Generated by OpenAPI Generator (https://openapi-generator.tech)
Do not edit the class manually.
""" # noqa: E501
import io
import warnings
from pydantic import validate_call, Field, StrictFloat, StrictStr, StrictInt
from typing import Dict, List, Optional, Tuple, Union, Any
try:
from typing import Annotated
except ImportError:
from typing_extensions import Annotated
from pydantic import Field
from typing_extensions import Annotated
from pydantic import StrictBool, StrictStr
from typing import List, Optional
from vcell_client.models.bio_model import BioModel
from vcell_client.models.bio_model_summary import BioModelSummary
from vcell_client.api_client import ApiClient
from vcell_client.api_response import ApiResponse
from vcell_client.rest import RESTResponseType
class BioModelResourceApi:
"""NOTE: This class is auto generated by OpenAPI Generator
Ref: https://openapi-generator.tech
Do not edit the class manually.
"""
def __init__(self, api_client=None) -> None:
if api_client is None:
api_client = ApiClient.get_default()
self.api_client = api_client
@validate_call
def delete_bio_model(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> None:
"""Delete the BioModel from VCell's database.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._delete_bio_model_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
).data
@validate_call
def delete_bio_model_with_http_info(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> ApiResponse[None]:
"""Delete the BioModel from VCell's database.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._delete_bio_model_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
)
@validate_call
def delete_bio_model_without_preload_content(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> RESTResponseType:
"""Delete the BioModel from VCell's database.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._delete_bio_model_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
return response_data.response
def _delete_bio_model_serialize(
self,
bio_model_id,
_request_auth,
_content_type,
_headers,
_host_index,
) -> Tuple:
_host = None
_collection_formats: Dict[str, str] = {
}
_path_params: Dict[str, str] = {}
_query_params: List[Tuple[str, str]] = []
_header_params: Dict[str, Optional[str]] = _headers or {}
_form_params: List[Tuple[str, str]] = []
_files: Dict[str, str] = {}
_body_params: Optional[bytes] = None
# process the path parameters
if bio_model_id is not None:
_path_params['bioModelID'] = bio_model_id
# process the query parameters
# process the header parameters
# process the form parameters
# process the body parameter
# set the HTTP header `Accept`
_header_params['Accept'] = self.api_client.select_header_accept(
[
'application/json'
]
)
# authentication setting
_auth_settings: List[str] = [
]
return self.api_client.param_serialize(
method='DELETE',
resource_path='/api/v1/bioModel/{bioModelID}',
path_params=_path_params,
query_params=_query_params,
header_params=_header_params,
body=_body_params,
post_params=_form_params,
files=_files,
auth_settings=_auth_settings,
collection_formats=_collection_formats,
_host=_host,
_request_auth=_request_auth
)
@validate_call
def get_bio_model(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> BioModel:
"""Get BioModel.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "BioModel",
'403': "VCellHTTPError",
'404': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
).data
@validate_call
def get_bio_model_with_http_info(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> ApiResponse[BioModel]:
"""Get BioModel.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "BioModel",
'403': "VCellHTTPError",
'404': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
)
@validate_call
def get_bio_model_without_preload_content(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> RESTResponseType:
"""Get BioModel.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "BioModel",
'403': "VCellHTTPError",
'404': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
return response_data.response
def _get_bio_model_serialize(
self,
bio_model_id,
_request_auth,
_content_type,
_headers,
_host_index,
) -> Tuple:
_host = None
_collection_formats: Dict[str, str] = {
}
_path_params: Dict[str, str] = {}
_query_params: List[Tuple[str, str]] = []
_header_params: Dict[str, Optional[str]] = _headers or {}
_form_params: List[Tuple[str, str]] = []
_files: Dict[str, str] = {}
_body_params: Optional[bytes] = None
# process the path parameters
if bio_model_id is not None:
_path_params['bioModelID'] = bio_model_id
# process the query parameters
# process the header parameters
# process the form parameters
# process the body parameter
# set the HTTP header `Accept`
_header_params['Accept'] = self.api_client.select_header_accept(
[
'application/json'
]
)
# authentication setting
_auth_settings: List[str] = [
]
return self.api_client.param_serialize(
method='GET',
resource_path='/api/v1/bioModel/{bioModelID}',
path_params=_path_params,
query_params=_query_params,
header_params=_header_params,
body=_body_params,
post_params=_form_params,
files=_files,
auth_settings=_auth_settings,
collection_formats=_collection_formats,
_host=_host,
_request_auth=_request_auth
)
@validate_call
def get_bio_model_summaries(
self,
include_public_and_shared: Annotated[Optional[StrictBool], Field(description="Includes BioModel summaries that are public or shared with requester. Default is true.")] = None,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> List[BioModelSummary]:
"""Return BioModel summaries.
:param include_public_and_shared: Includes BioModel summaries that are public or shared with requester. Default is true.
:type include_public_and_shared: bool
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_summaries_serialize(
include_public_and_shared=include_public_and_shared,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "List[BioModelSummary]",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
).data
@validate_call
def get_bio_model_summaries_with_http_info(
self,
include_public_and_shared: Annotated[Optional[StrictBool], Field(description="Includes BioModel summaries that are public or shared with requester. Default is true.")] = None,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> ApiResponse[List[BioModelSummary]]:
"""Return BioModel summaries.
:param include_public_and_shared: Includes BioModel summaries that are public or shared with requester. Default is true.
:type include_public_and_shared: bool
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_summaries_serialize(
include_public_and_shared=include_public_and_shared,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "List[BioModelSummary]",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
)
@validate_call
def get_bio_model_summaries_without_preload_content(
self,
include_public_and_shared: Annotated[Optional[StrictBool], Field(description="Includes BioModel summaries that are public or shared with requester. Default is true.")] = None,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> RESTResponseType:
"""Return BioModel summaries.
:param include_public_and_shared: Includes BioModel summaries that are public or shared with requester. Default is true.
:type include_public_and_shared: bool
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_summaries_serialize(
include_public_and_shared=include_public_and_shared,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "List[BioModelSummary]",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
return response_data.response
def _get_bio_model_summaries_serialize(
self,
include_public_and_shared,
_request_auth,
_content_type,
_headers,
_host_index,
) -> Tuple:
_host = None
_collection_formats: Dict[str, str] = {
}
_path_params: Dict[str, str] = {}
_query_params: List[Tuple[str, str]] = []
_header_params: Dict[str, Optional[str]] = _headers or {}
_form_params: List[Tuple[str, str]] = []
_files: Dict[str, str] = {}
_body_params: Optional[bytes] = None
# process the path parameters
# process the query parameters
if include_public_and_shared is not None:
_query_params.append(('includePublicAndShared', include_public_and_shared))
# process the header parameters
# process the form parameters
# process the body parameter
# set the HTTP header `Accept`
_header_params['Accept'] = self.api_client.select_header_accept(
[
'application/json'
]
)
# authentication setting
_auth_settings: List[str] = [
]
return self.api_client.param_serialize(
method='GET',
resource_path='/api/v1/bioModel/summaries',
path_params=_path_params,
query_params=_query_params,
header_params=_header_params,
body=_body_params,
post_params=_form_params,
files=_files,
auth_settings=_auth_settings,
collection_formats=_collection_formats,
_host=_host,
_request_auth=_request_auth
)
@validate_call
def get_bio_model_summary(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> BioModelSummary:
"""All of the text based information about a BioModel (summary, version, publication status, etc...), but not the actual BioModel itself.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_summary_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "BioModelSummary",
'403': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
).data
@validate_call
def get_bio_model_summary_with_http_info(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> ApiResponse[BioModelSummary]:
"""All of the text based information about a BioModel (summary, version, publication status, etc...), but not the actual BioModel itself.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_summary_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "BioModelSummary",
'403': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
)
@validate_call
def get_bio_model_summary_without_preload_content(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> RESTResponseType:
"""All of the text based information about a BioModel (summary, version, publication status, etc...), but not the actual BioModel itself.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_summary_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "BioModelSummary",
'403': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
return response_data.response
def _get_bio_model_summary_serialize(
self,
bio_model_id,
_request_auth,
_content_type,
_headers,
_host_index,
) -> Tuple:
_host = None
_collection_formats: Dict[str, str] = {
}
_path_params: Dict[str, str] = {}
_query_params: List[Tuple[str, str]] = []
_header_params: Dict[str, Optional[str]] = _headers or {}
_form_params: List[Tuple[str, str]] = []
_files: Dict[str, str] = {}
_body_params: Optional[bytes] = None
# process the path parameters
if bio_model_id is not None:
_path_params['bioModelID'] = bio_model_id
# process the query parameters
# process the header parameters
# process the form parameters
# process the body parameter
# set the HTTP header `Accept`
_header_params['Accept'] = self.api_client.select_header_accept(
[
'application/json'
]
)
# authentication setting
_auth_settings: List[str] = [
]
return self.api_client.param_serialize(
method='GET',
resource_path='/api/v1/bioModel/{bioModelID}/summary',
path_params=_path_params,
query_params=_query_params,
header_params=_header_params,
body=_body_params,
post_params=_form_params,
files=_files,
auth_settings=_auth_settings,
collection_formats=_collection_formats,
_host=_host,
_request_auth=_request_auth
)
@validate_call
def get_bio_model_vcml(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> str:
"""Get the BioModel in VCML format.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_vcml_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "str",
'403': "VCellHTTPError",
'404': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
).data
@validate_call
def get_bio_model_vcml_with_http_info(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> ApiResponse[str]:
"""Get the BioModel in VCML format.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_vcml_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "str",
'403': "VCellHTTPError",
'404': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
)
@validate_call
def get_bio_model_vcml_without_preload_content(
self,
bio_model_id: StrictStr,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> RESTResponseType:
"""Get the BioModel in VCML format.
:param bio_model_id: (required)
:type bio_model_id: str
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._get_bio_model_vcml_serialize(
bio_model_id=bio_model_id,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "str",
'403': "VCellHTTPError",
'404': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
return response_data.response
def _get_bio_model_vcml_serialize(
self,
bio_model_id,
_request_auth,
_content_type,
_headers,
_host_index,
) -> Tuple:
_host = None
_collection_formats: Dict[str, str] = {
}
_path_params: Dict[str, str] = {}
_query_params: List[Tuple[str, str]] = []
_header_params: Dict[str, Optional[str]] = _headers or {}
_form_params: List[Tuple[str, str]] = []
_files: Dict[str, str] = {}
_body_params: Optional[bytes] = None
# process the path parameters
if bio_model_id is not None:
_path_params['bioModelID'] = bio_model_id
# process the query parameters
# process the header parameters
# process the form parameters
# process the body parameter
# set the HTTP header `Accept`
_header_params['Accept'] = self.api_client.select_header_accept(
[
'text/xml',
'application/json'
]
)
# authentication setting
_auth_settings: List[str] = [
]
return self.api_client.param_serialize(
method='GET',
resource_path='/api/v1/bioModel/{bioModelID}/vcml_download',
path_params=_path_params,
query_params=_query_params,
header_params=_header_params,
body=_body_params,
post_params=_form_params,
files=_files,
auth_settings=_auth_settings,
collection_formats=_collection_formats,
_host=_host,
_request_auth=_request_auth
)
@validate_call
def save_bio_model(
self,
body: Annotated[StrictStr, Field(description="BioModelVCML which will be saved.")],
new_name: Annotated[Optional[StrictStr], Field(description="Name to save new BioModel under. Leave blank if re-saving existing BioModel.")] = None,
sims_requiring_updates: Annotated[Optional[List[StrictStr]], Field(description="The name of simulations that will be prepared for future execution.")] = None,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> str:
"""Save's the given BioModel. Optional parameters of name and simulations to update due to math changes. Returns saved BioModel as VCML.
:param body: BioModelVCML which will be saved. (required)
:type body: str
:param new_name: Name to save new BioModel under. Leave blank if re-saving existing BioModel.
:type new_name: str
:param sims_requiring_updates: The name of simulations that will be prepared for future execution.
:type sims_requiring_updates: List[str]
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._save_bio_model_serialize(
body=body,
new_name=new_name,
sims_requiring_updates=sims_requiring_updates,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "str",
'401': "VCellHTTPError",
'403': None,
'422': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
).data
@validate_call
def save_bio_model_with_http_info(
self,
body: Annotated[StrictStr, Field(description="BioModelVCML which will be saved.")],
new_name: Annotated[Optional[StrictStr], Field(description="Name to save new BioModel under. Leave blank if re-saving existing BioModel.")] = None,
sims_requiring_updates: Annotated[Optional[List[StrictStr]], Field(description="The name of simulations that will be prepared for future execution.")] = None,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> ApiResponse[str]:
"""Save's the given BioModel. Optional parameters of name and simulations to update due to math changes. Returns saved BioModel as VCML.
:param body: BioModelVCML which will be saved. (required)
:type body: str
:param new_name: Name to save new BioModel under. Leave blank if re-saving existing BioModel.
:type new_name: str
:param sims_requiring_updates: The name of simulations that will be prepared for future execution.
:type sims_requiring_updates: List[str]
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._save_bio_model_serialize(
body=body,
new_name=new_name,
sims_requiring_updates=sims_requiring_updates,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "str",
'401': "VCellHTTPError",
'403': None,
'422': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
response_data.read()
return self.api_client.response_deserialize(
response_data=response_data,
response_types_map=_response_types_map,
)
@validate_call
def save_bio_model_without_preload_content(
self,
body: Annotated[StrictStr, Field(description="BioModelVCML which will be saved.")],
new_name: Annotated[Optional[StrictStr], Field(description="Name to save new BioModel under. Leave blank if re-saving existing BioModel.")] = None,
sims_requiring_updates: Annotated[Optional[List[StrictStr]], Field(description="The name of simulations that will be prepared for future execution.")] = None,
_request_timeout: Union[
None,
Annotated[StrictFloat, Field(gt=0)],
Tuple[
Annotated[StrictFloat, Field(gt=0)],
Annotated[StrictFloat, Field(gt=0)]
]
] = None,
_request_auth: Optional[Dict[StrictStr, Any]] = None,
_content_type: Optional[StrictStr] = None,
_headers: Optional[Dict[StrictStr, Any]] = None,
_host_index: Annotated[StrictInt, Field(ge=0, le=0)] = 0,
) -> RESTResponseType:
"""Save's the given BioModel. Optional parameters of name and simulations to update due to math changes. Returns saved BioModel as VCML.
:param body: BioModelVCML which will be saved. (required)
:type body: str
:param new_name: Name to save new BioModel under. Leave blank if re-saving existing BioModel.
:type new_name: str
:param sims_requiring_updates: The name of simulations that will be prepared for future execution.
:type sims_requiring_updates: List[str]
:param _request_timeout: timeout setting for this request. If one
number provided, it will be total request
timeout. It can also be a pair (tuple) of
(connection, read) timeouts.
:type _request_timeout: int, tuple(int, int), optional
:param _request_auth: set to override the auth_settings for an a single
request; this effectively ignores the
authentication in the spec for a single request.
:type _request_auth: dict, optional
:param _content_type: force content-type for the request.
:type _content_type: str, Optional
:param _headers: set to override the headers for a single
request; this effectively ignores the headers
in the spec for a single request.
:type _headers: dict, optional
:param _host_index: set to override the host_index for a single
request; this effectively ignores the host_index
in the spec for a single request.
:type _host_index: int, optional
:return: Returns the result object.
""" # noqa: E501
_param = self._save_bio_model_serialize(
body=body,
new_name=new_name,
sims_requiring_updates=sims_requiring_updates,
_request_auth=_request_auth,
_content_type=_content_type,
_headers=_headers,
_host_index=_host_index
)
_response_types_map: Dict[str, Optional[str]] = {
'200': "str",
'401': "VCellHTTPError",
'403': None,
'422': "VCellHTTPError",
'500': "VCellHTTPError"
}
response_data = self.api_client.call_api(
*_param,
_request_timeout=_request_timeout
)
return response_data.response
def _save_bio_model_serialize(
self,
body,
new_name,
sims_requiring_updates,
_request_auth,
_content_type,
_headers,
_host_index,
) -> Tuple:
_host = None
_collection_formats: Dict[str, str] = {
'simsRequiringUpdates': 'multi',
}
_path_params: Dict[str, str] = {}
_query_params: List[Tuple[str, str]] = []
_header_params: Dict[str, Optional[str]] = _headers or {}
_form_params: List[Tuple[str, str]] = []
_files: Dict[str, str] = {}
_body_params: Optional[bytes] = None
# process the path parameters
# process the query parameters
if new_name is not None:
_query_params.append(('newName', new_name))
if sims_requiring_updates is not None:
_query_params.append(('simsRequiringUpdates', sims_requiring_updates))
# process the header parameters
# process the form parameters
# process the body parameter
if body is not None:
_body_params = body
# set the HTTP header `Accept`
_header_params['Accept'] = self.api_client.select_header_accept(
[
'application/xml',
'application/json'
]
)
# set the HTTP header `Content-Type`
if _content_type:
_header_params['Content-Type'] = _content_type
else:
_default_content_type = (
self.api_client.select_header_content_type(
[
'application/xml'
]
)
)
if _default_content_type is not None:
_header_params['Content-Type'] = _default_content_type
# authentication setting
_auth_settings: List[str] = [
'openId'
]
return self.api_client.param_serialize(
method='POST',
resource_path='/api/v1/bioModel',
path_params=_path_params,
query_params=_query_params,
header_params=_header_params,
body=_body_params,
post_params=_form_params,
files=_files,
auth_settings=_auth_settings,
collection_formats=_collection_formats,
_host=_host,
_request_auth=_request_auth
)