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import filecmp |
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import os |
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from pathlib import Path |
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import pytest |
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from vcell_cli_utils import wrapper |
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testdata = [ |
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("Aavani2019_BIOMD0000000876_vcell_7.5.0.27.omex", |
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"Aavani2019_BIOMD0000000876_vcell_7.5.0.27.report.json"), |
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("VerySimple_vcell_7.5.0.27.omex", |
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"VerySimple_vcell_7.5.0.27.report.json"), |
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("eungdamrong_and_Iyengar_BiophysJ_vcell_7.5.0.30.omex", |
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"eungdamrong_and_Iyengar_BiophysJ_vcell_7.5.0.30.report.json") |
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] |
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@pytest.mark.parametrize("input_omex,expected_report", testdata) |
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def test_wrapper_validate_omex(input_omex: str, expected_report: str) -> None: |
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temp_path: Path = Path(__file__).parent.parent |
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omex_file: Path = Path(__file__).parent / "fixtures" / "validation" / input_omex |
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expected_report_file: Path = Path(__file__).parent / "fixtures" / "validation" / expected_report |
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generated_report_file: Path = Path(__file__).parent / "fixtures" / "problem.report" |
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if generated_report_file.exists(): |
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os.remove(generated_report_file) |
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wrapper.validateOmex(str(omex_file), str(temp_path), str(generated_report_file)) |
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filecmp.clear_cache() |
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bSame: bool = filecmp.cmp(expected_report_file, generated_report_file, shallow=False) |
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assert bSame |
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