| | <?xml version='1.0' encoding='UTF-8' standalone='no'?> |
| | <sbml xmlns="http://www.sbml.org/sbml/level3/version2/core" level="3" spatial:required="true" version="2" xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1"> |
| | <notes> |
| | <body xmlns="http://www.w3.org/1999/xhtml"> |
| | <p>Exported by VCell 7.3</p> |
| | </body> |
| | </notes> |
| | <model areaUnits="Unit_dm2" extentUnits="Unit_umol" id="TinySpacialProject_Application0" lengthUnits="Unit_dm" name="TinySpacialProject_Application0" substanceUnits="Unit_umol" timeUnits="Unit_s" volumeUnits="Unit_l"> |
| | <spatial:geometry xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateSystem="cartesian" spatial:id="vcell"> |
| | <spatial:listOfCoordinateComponents> |
| | <spatial:coordinateComponent spatial:id="x" spatial:type="cartesianX" spatial:unit="Unit_dm"> |
| | <spatial:boundaryMin spatial:id="Xmin" spatial:value="0.0"/> |
| | <spatial:boundaryMax spatial:id="Xmax" spatial:value="10.0"/> |
| | </spatial:coordinateComponent> |
| | </spatial:listOfCoordinateComponents> |
| | <spatial:listOfDomains> |
| | <spatial:domain spatial:domainType="subdomain0" spatial:id="subdomain00"> |
| | <spatial:listOfInteriorPoints> |
| | <spatial:interiorPoint spatial:coord1="0.0"/> |
| | </spatial:listOfInteriorPoints> |
| | </spatial:domain> |
| | </spatial:listOfDomains> |
| | <spatial:listOfDomainTypes> |
| | <spatial:domainType spatial:id="subdomain0" spatial:spatialDimensions="1"> |
| | <annotation> |
| | <vcell:SubVolumeAttributes xmlns:vcell="http://sourceforge.net/projects/vcell" vcell:handle="0" vcell:defaultBCtypeXmin="Flux" vcell:defaultBCtypeXmax="Flux"/> |
| | </annotation> |
| | </spatial:domainType> |
| | </spatial:listOfDomainTypes> |
| | <spatial:listOfGeometryDefinitions> |
| | <spatial:analyticGeometry spatial:id="Analytic_Geometry2" spatial:isActive="true"> |
| | <annotation> |
| | <vcell:GeometrySampling xmlns:vcell="http://sourceforge.net/projects/vcell" vcell:numX="50" vcell:cutoffFrequency="0.3"/> |
| | </annotation> |
| | <spatial:listOfAnalyticVolumes> |
| | <spatial:analyticVolume spatial:domainType="subdomain0" spatial:functionType="layered" spatial:id="AnalyticVol_subdomain0" spatial:ordinal="0"> |
| | <math xmlns="http://www.w3.org/1998/Math/MathML"> |
| | <cn> 1 </cn> |
| | </math> |
| | </spatial:analyticVolume> |
| | </spatial:listOfAnalyticVolumes> |
| | </spatial:analyticGeometry> |
| | </spatial:listOfGeometryDefinitions> |
| | </spatial:geometry> |
| | <listOfUnitDefinitions> |
| | <unitDefinition id="Unit_umol"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="mole" multiplier="1" scale="-6"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_l"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="litre" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_dm2"> |
| | <listOfUnits> |
| | <unit exponent="2" kind="metre" multiplier="1" scale="-1"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_dm"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="metre" multiplier="1" scale="-1"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_s"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="second" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_dm2_s_1"> |
| | <listOfUnits> |
| | <unit exponent="2" kind="metre" multiplier="1" scale="-1"/> |
| | <unit exponent="-1" kind="second" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_umol_dm_l_1_s_1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="mole" multiplier="1" scale="-6"/> |
| | <unit exponent="1" kind="metre" multiplier="1" scale="-1"/> |
| | <unit exponent="-1" kind="litre" multiplier="1" scale="0"/> |
| | <unit exponent="-1" kind="second" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_K"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="kelvin" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit__1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="dimensionless" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_C_mol_1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="coulomb" multiplier="1" scale="0"/> |
| | <unit exponent="-1" kind="mole" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_C_nmol_1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="coulomb" multiplier="1" scale="0"/> |
| | <unit exponent="-1" kind="mole" multiplier="1" scale="-9"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_molecules_pmol_1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="item" multiplier="1" scale="0"/> |
| | <unit exponent="-1" kind="mole" multiplier="1" scale="-12"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit__1000000000"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="dimensionless" multiplier="1000000000" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_mV_C_K_1_mol_1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="volt" multiplier="1" scale="-3"/> |
| | <unit exponent="1" kind="coulomb" multiplier="1" scale="0"/> |
| | <unit exponent="-1" kind="kelvin" multiplier="1" scale="0"/> |
| | <unit exponent="-1" kind="mole" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_mV_V_1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="dimensionless" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_uM_um3_molecules_1"> |
| | <listOfUnits> |
| | <unit exponent="1" kind="mole" multiplier="1" scale="-6"/> |
| | <unit exponent="-1" kind="litre" multiplier="1" scale="0"/> |
| | <unit exponent="3" kind="metre" multiplier="1" scale="-6"/> |
| | <unit exponent="-1" kind="item" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | <unitDefinition id="Unit_s_1"> |
| | <listOfUnits> |
| | <unit exponent="-1" kind="second" multiplier="1" scale="0"/> |
| | </listOfUnits> |
| | </unitDefinition> |
| | </listOfUnitDefinitions> |
| | <listOfCompartments> |
| | <compartment constant="true" id="c0" name="c0" size="10" spatialDimensions="3" units="Unit_l"> |
| | <spatial:compartmentMapping xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:domainType="subdomain0" spatial:id="subdomain0c0" spatial:unitSize="1.0"/> |
| | </compartment> |
| | </listOfCompartments> |
| | <listOfSpecies> |
| | <species boundaryCondition="false" compartment="c0" constant="false" hasOnlySubstanceUnits="false" id="s0" name="s0" substanceUnits="Unit_umol"/> |
| | <species boundaryCondition="false" compartment="c0" constant="false" hasOnlySubstanceUnits="false" id="s1" name="s1" substanceUnits="Unit_umol"/> |
| | </listOfSpecies> |
| | <listOfParameters> |
| | <parameter constant="false" id="x" units="Unit_dm" value="0"> |
| | <spatial:spatialSymbolReference xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:spatialRef="x"/> |
| | </parameter> |
| | <parameter constant="true" id="s0_diff" units="Unit_dm2_s_1" value="1E-9"> |
| | <spatial:diffusionCoefficient xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:type="isotropic" spatial:variable="s0"/> |
| | </parameter> |
| | <parameter constant="true" id="s0_BC_Xm" units="Unit_umol_dm_l_1_s_1" value="0"> |
| | <spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmin" spatial:type="Neumann" spatial:variable="s0"/> |
| | </parameter> |
| | <parameter constant="true" id="s0_BC_Xp" units="Unit_umol_dm_l_1_s_1" value="0"> |
| | <spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmax" spatial:type="Neumann" spatial:variable="s0"/> |
| | </parameter> |
| | <parameter constant="true" id="s1_diff" units="Unit_dm2_s_1" value="1E-9"> |
| | <spatial:diffusionCoefficient xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:type="isotropic" spatial:variable="s1"/> |
| | </parameter> |
| | <parameter constant="true" id="s1_BC_Xm" units="Unit_umol_dm_l_1_s_1" value="0"> |
| | <spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmin" spatial:type="Neumann" spatial:variable="s1"/> |
| | </parameter> |
| | <parameter constant="true" id="s1_BC_Xp" units="Unit_umol_dm_l_1_s_1" value="0"> |
| | <spatial:boundaryCondition xmlns:spatial="http://www.sbml.org/sbml/level3/version1/spatial/version1" spatial:coordinateBoundary="Xmax" spatial:type="Neumann" spatial:variable="s1"/> |
| | </parameter> |
| | <parameter constant="true" id="_F_" units="Unit_C_mol_1" value="9.64853321E4"/> |
| | <parameter constant="true" id="Kf_r0" units="Unit_s_1" value="1"/> |
| | <parameter constant="true" id="Kr_r0" units="Unit_s_1" value="0.5"/> |
| | </listOfParameters> |
| | <listOfInitialAssignments> |
| | <initialAssignment symbol="s0"> |
| | <math xmlns="http://www.w3.org/1998/Math/MathML"> |
| | <apply> |
| | <times/> |
| | <cn> 100000 </cn> |
| | <ci> x </ci> |
| | </apply> |
| | </math> |
| | </initialAssignment> |
| | <initialAssignment symbol="s1"> |
| | <math xmlns="http://www.w3.org/1998/Math/MathML"> |
| | <apply> |
| | <plus/> |
| | <cn> 10 </cn> |
| | <apply> |
| | <minus/> |
| | <apply> |
| | <times/> |
| | <cn> 1 </cn> |
| | <cn> 100000 </cn> |
| | <ci> x </ci> |
| | </apply> |
| | </apply> |
| | </apply> |
| | </math> |
| | </initialAssignment> |
| | </listOfInitialAssignments> |
| | <listOfReactions> |
| | <reaction compartment="c0" id="r0" name="r0" reversible="true" spatial:isLocal="true"> |
| | <listOfReactants> |
| | <speciesReference constant="true" id="r0_s0r" species="s0" stoichiometry="1"/> |
| | </listOfReactants> |
| | <listOfProducts> |
| | <speciesReference constant="true" id="r0_s1p" species="s1" stoichiometry="1"/> |
| | </listOfProducts> |
| | <kineticLaw> |
| | <math xmlns="http://www.w3.org/1998/Math/MathML"> |
| | <apply> |
| | <plus/> |
| | <apply> |
| | <times/> |
| | <ci> Kf_r0 </ci> |
| | <ci> s0 </ci> |
| | </apply> |
| | <apply> |
| | <minus/> |
| | <apply> |
| | <times/> |
| | <ci> Kr_r0 </ci> |
| | <ci> s1 </ci> |
| | </apply> |
| | </apply> |
| | </apply> |
| | </math> |
| | </kineticLaw> |
| | </reaction> |
| | </listOfReactions> |
| | </model> |
| | </sbml> |
