| # This file is used to define the extra feature dimensions of different modules. | |
| INPUTFEATS_DIMS = { | |
| "restype": 35, | |
| "profile": 32, | |
| "deletion_mean": 1, | |
| "is_hotspot_residue": 1 | |
| } # used by src.model.modules.embedders.InputFeatureEmbedder | |
| RELPOSENC_DIMS = { | |
| "asym_id": 1, | |
| "residue_index": 1, | |
| "entity_id": 1, | |
| "sym_id": 1, | |
| "token_index": 1, | |
| } # used by src.model.modules.embedders.RelativePositionEncoding | |
| MSAFEATS_DIMS = { | |
| "msa": 32, | |
| "has_deletion": 1, | |
| "deletion_value": 1, | |
| } # used by src.model.modules.pairformer.MSAModule | |
| ATOMATTNENC_DIMS = { | |
| "ref_mask": 1, | |
| "ref_element": 129, | |
| "ref_atom_name_chars": 4 * 64, | |
| } # used by src.model.modules.transformer.AtomAttentionEncoder |