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Datasets:
isalgo
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airr_ankspond

Modalities:
Text
Tags:
tcr
repertoire
autoimmunity
rheumatology
hla
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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 8 new columns ({'fraction', 'sample_name', 'donor_id', 'b27', 'proj', 'disease_status', 'sample_type', 'time_point'}) and 5 missing columns ({'locus', 'v_call', 'junction_aa', 'count', 'j_call'}).

This happened while the csv dataset builder was generating data using

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/tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hLP.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hLP.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_LK_PB_F.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_LK_PB_F.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_LN_PB_F.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_LN_PB_F.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_OB_PB_F.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_OB_PB_F.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_Sass_PB_F.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_Sass_PB_F.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_TwHM2_PB_F.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_TwHM2_PB_F.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_ZN_PB_F.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_ZN_PB_F.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_Zbot_PB_F.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/hd_Zbot_PB_F.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/metadata.tsv (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/metadata.tsv), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1004.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1004.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1005.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1005.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p112635.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p112635.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1321.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1321.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p144852.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p144852.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1694.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1694.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1772.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1772.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1841.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1841.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1974.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1974.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1988.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1988.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2048.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2048.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2301.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2301.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p434.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p434.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p556.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p556.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p744.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p744.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p754.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p754.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/old/metadata.tsv (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/old/metadata.tsv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              donor_id: string
              disease_status: string
              b27: string
              proj: string
              sample_type: string
              time_point: string
              sample_name: string
              fraction: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1198
              to
              {'count': Value('int64'), 'junction_aa': Value('string'), 'v_call': Value('string'), 'j_call': Value('string'), 'locus': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 8 new columns ({'fraction', 'sample_name', 'donor_id', 'b27', 'proj', 'disease_status', 'sample_type', 'time_point'}) and 5 missing columns ({'locus', 'v_call', 'junction_aa', 'count', 'j_call'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/isalgo/airr_ankspond/new/metadata.tsv (at revision 487aca8e2c9e545870f1a61cf05ccf0acc16f9ca), [/tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/Azh_0.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/Azh_0.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/DL_0.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/DL_0.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/KB_0.tsv.gz 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/tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1004.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1004.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1005.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1005.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p112635.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p112635.tsv.gz), 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/tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1772.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1772.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1841.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1841.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1974.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1974.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1988.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p1988.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2048.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2048.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2301.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p2301.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p434.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p434.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p556.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p556.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p744.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p744.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p754.tsv.gz (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/new/p754.tsv.gz), /tmp/hf-datasets-cache/medium/datasets/79187229839015-config-parquet-and-info-isalgo-airr_ankspond-6a6ebd85/hub/datasets--isalgo--airr_ankspond/snapshots/487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/old/metadata.tsv (origin=hf://datasets/isalgo/airr_ankspond@487aca8e2c9e545870f1a61cf05ccf0acc16f9ca/old/metadata.tsv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

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count
int64
junction_aa
string
v_call
string
j_call
string
locus
string
1,722
CASRPLLDRNNEQFF
TRBV27
TRBJ2-1
beta
1,683
CASSYRGTAWETQYF
TRBV6-3
TRBJ2-5
beta
1,557
CSVLSGDWGIQYF
TRBV20-1
TRBJ2-4
beta
1,300
CASSPGDQPQHF
TRBV7-9
TRBJ1-5
beta
685
CASSLGAGLADNYEQYF
TRBV11-2
TRBJ2-7
beta
662
CASSPGQIEAAGELFF
TRBV5-1
TRBJ2-2
beta
604
CSARESGRIADTQYF
TRBV20-1
TRBJ2-3
beta
535
CATRDSQAGGTDTQYF
TRBV28
TRBJ2-3
beta
534
CASSLQGEHTEAFF
TRBV11-2
TRBJ1-1
beta
517
CASSEQGDTDTQYF
TRBV6-4
TRBJ2-3
beta
498
CASSPPGLAGPKPTDTQYF
TRBV12-4
TRBJ2-3
beta
467
CASSSQEFYGYTF
TRBV7-9
TRBJ1-2
beta
454
CASSLAGPGAKNIQYF
TRBV7-9
TRBJ2-4
beta
441
CASSRYSGNTGELFF
TRBV5-1
TRBJ2-2
beta
421
CASSPQRTGSYEQYF
TRBV4-2
TRBJ2-7
beta
420
CASSQDLPGQLGDTQYF
TRBV4-3
TRBJ2-3
beta
406
CSGFTGTGELFF
TRBV29-1
TRBJ2-2
beta
404
CSANEGTDYNEQFF
TRBV20-1
TRBJ2-1
beta
383
CASSVPSGRAHEQFF
TRBV7-2
TRBJ2-1
beta
373
CASSLSGTSGGEQYF
TRBV9
TRBJ2-7
beta
362
CATSAGGNEKLFF
TRBV24-1
TRBJ1-4
beta
359
CASSQGTSGTETQYF
TRBV5-6
TRBJ2-5
beta
350
CASSLVLADNEQFF
TRBV7-8
TRBJ2-1
beta
342
CASSPTTGGYEQYF
TRBV12-4
TRBJ2-7
beta
342
CASSLGGRNQPQHF
TRBV3-1
TRBJ1-5
beta
341
CSVTTTTGTDYGYTF
TRBV20-1
TRBJ1-2
beta
331
CASSLGSQPQHF
TRBV7-9
TRBJ1-5
beta
330
CASSLTAYGTNRGQFF
TRBV7-3
TRBJ2-1
beta
330
CASSHGSGANVLTF
TRBV4-1
TRBJ2-6
beta
328
CASSNPSGTADTGELFF
TRBV9
TRBJ2-2
beta
318
CSAREREGYYEQYF
TRBV20-1
TRBJ2-7
beta
315
CASSPRISGANVLTF
TRBV28
TRBJ2-6
beta
312
CASSLSDGELFF
TRBV7-9
TRBJ2-2
beta
297
CASSQNRGSSNEQFF
TRBV4-2
TRBJ2-1
beta
284
CASSLEGAWTGELFF
TRBV5-1
TRBJ2-2
beta
282
CASSFGIGTGGTEAFF
TRBV5-1
TRBJ1-1
beta
280
CSASGPGTGELFF
TRBV20-1
TRBJ2-2
beta
278
CASTLTSGYNEQFF
TRBV11-2
TRBJ2-1
beta
276
CASSIVSGGNEQFF
TRBV7-3
TRBJ2-1
beta
276
CASSLQENQPQHF
TRBV6-3
TRBJ1-5
beta
271
CASSRPLGGTDTQYF
TRBV14
TRBJ2-3
beta
268
CASSLVSDGPTLEFF
TRBV7-9
TRBJ2-1
beta
261
CASSYGQYYGYTF
TRBV7-6
TRBJ1-2
beta
260
CASSLVPPGSEQFF
TRBV11-2
TRBJ2-1
beta
253
CASSQALGGGTDTQYF
TRBV4-3
TRBJ2-3
beta
239
CASSFWGNPRETQYF
TRBV11-2
TRBJ2-5
beta
236
CASSLGISYEQYF
TRBV7-2
TRBJ2-7
beta
235
CSAGQGSRTGELFF
TRBV29-1
TRBJ2-2
beta
230
CASSQDEGQGWNEQFF
TRBV4-3
TRBJ2-1
beta
230
CASSPSYEQYF
TRBV7-2
TRBJ2-7
beta
226
CASSQDRRGETQYF
TRBV4-1
TRBJ2-5
beta
224
CASSQEGTSGGAYNEQFF
TRBV4-2
TRBJ2-1
beta
221
CSARRRESEQFF
TRBV20-1
TRBJ2-1
beta
218
CASSQLNRVTNEQFF
TRBV4-3
TRBJ2-1
beta
216
CASSLAGASYEQYF
TRBV12-4
TRBJ2-7
beta
215
CASGTATYNEQFF
TRBV25-1
TRBJ2-1
beta
213
CASSLGQTYEQYF
TRBV7-2
TRBJ2-7
beta
212
CATSPGTDTGELFF
TRBV24-1
TRBJ2-2
beta
209
CASSYDGEAGELFF
TRBV6-3
TRBJ2-2
beta
205
CASSQGTSGYNEQFF
TRBV3-1
TRBJ2-1
beta
201
CASSLAFKGSTDTQYF
TRBV7-8
TRBJ2-3
beta
196
CASSLLRGHTDTQYF
TRBV6-6
TRBJ2-3
beta
193
CASGTGDGANVLTF
TRBV6-3
TRBJ2-6
beta
193
CASSYTAGTSQFF
TRBV4-3
TRBJ2-1
beta
193
CSVAPLTDTQYF
TRBV29-1
TRBJ2-3
beta
191
CASSSQFTDTQYF
TRBV5-1
TRBJ2-3
beta
191
CSVASAYEQYF
TRBV29-1
TRBJ2-7
beta
188
CASSVTVNSFF
TRBV12-4
TRBJ2-1
beta
188
CASSLTDTQYF
TRBV7-9
TRBJ2-3
beta
183
CSARGPSDPGELFF
TRBV20-1
TRBJ2-2
beta
183
CASSYGPTYEQYF
TRBV7-2
TRBJ2-7
beta
181
CASSLGQGAGDTQYF
TRBV5-1
TRBJ2-3
beta
176
CASSLTFSGTGTASYEQYF
TRBV6-3
TRBJ2-7
beta
176
CASSFRPLSGQETQYF
TRBV7-2
TRBJ2-5
beta
176
CASSLKQGMQYF
TRBV12-4
TRBJ2-3
beta
173
CASSYTSGSTDTQYF
TRBV6-3
TRBJ2-3
beta
171
CASRPVQRGGTDTQYF
TRBV28
TRBJ2-3
beta
171
CASSQGLAKNIQYF
TRBV4-3
TRBJ2-4
beta
170
CASSLASYEQYF
TRBV7-9
TRBJ2-7
beta
169
CSAEPGQKYEQYF
TRBV20-1
TRBJ2-7
beta
166
CSVSQNNEQFF
TRBV29-1
TRBJ2-1
beta
165
CASSQDKAGGFYEQFF
TRBV4-2
TRBJ2-1
beta
164
CASKPDRRDRAYEQYF
TRBV28
TRBJ2-7
beta
163
CASSLSAGSTGELFF
TRBV27
TRBJ2-2
beta
161
CASSLEGQASSYEQYF
TRBV5-1
TRBJ2-7
beta
161
CASSLGGGDNEQFF
TRBV27
TRBJ2-1
beta
160
CASSPRGLSSYNEQFF
TRBV3-1
TRBJ2-1
beta
159
CASGTAQETQYF
TRBV25-1
TRBJ2-5
beta
157
CASSQEDQGVLYGYTF
TRBV14
TRBJ1-2
beta
153
CASSLRRVKETQYF
TRBV12-4
TRBJ2-5
beta
149
CASSSTFTDTQYF
TRBV5-1
TRBJ2-3
beta
148
CASSGGRADEQFF
TRBV4-1
TRBJ2-1
beta
148
CSVFEGGGEQYF
TRBV29-1
TRBJ2-7
beta
147
CASADPQGGQYF
TRBV7-2
TRBJ2-7
beta
146
CASRGTGEHNEQFF
TRBV6-4
TRBJ2-1
beta
145
CASSAGRQVAAGYTF
TRBV12-4
TRBJ1-2
beta
143
CASWASGVETQYF
TRBV27
TRBJ2-5
beta
140
CASSPSPGQGAGRANVLTF
TRBV12-4
TRBJ2-6
beta
140
CASSPPDRPHSEAFF
TRBV5-1
TRBJ1-1
beta
139
CASSLEGQASSYEQYF
TRBV5-1
TRBJ2-7
beta
End of preview.

Data from old/ folder comes from Komech EA, Pogorelyy MV, Egorov ES, Britanova OV, Rebrikov DV, Bochkova AG, Shmidt EI, Shostak NA, Shugay M, Lukyanov S, Mamedov IZ, Lebedev YB, Chudakov DM, Zvyagin IV. CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients. Rheumatology (Oxford). 2018 Jun 1;57(6):1097-1104. doi: 10.1093/rheumatology/kex517

Data from new/ folder comes from Komech EA, Koltakova AD, Barinova AA, Minervina AA, Salnikova MA, Shmidt EI, Korotaeva TV, Loginova EY, Erdes SF, Bogdanova EA, Shugay M, Lukyanov S, Lebedev YB, Zvyagin IV. TCR repertoire profiling revealed antigen-driven CD8+ T cell clonal groups shared in synovial fluid of patients with spondyloarthritis. Front Immunol. 2022 Oct 17;13:973243. doi: 10.3389/fimmu.2022.973243
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