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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 9 new columns ({'junction', 'junction_aa', 'd_call', 'j_call', 'duplicate_count', 'sequence_id', 'locus', 'duplicate_frequency', 'v_call'}) and 34 missing columns ({'donor', 'cell_subset', 'HLA-DRB5_1', 'day', 'HLA-DQB1_2', 'sample_id', 'HLA-DPB1_2', 'clonotypes', 'HLA-DRB3_1', 'raw_filename', 'file_name', 'HLA-DRB3_2', 'HLA-DQA1_2', 'HLA-DQA1_1', 'HLA-DRB1_2', 'HLA-DPB1_1', 'HLA-B_1', 'chain', 'vaccine', 'HLA-C_2', 'HLA-A_1', 'HLA-A_2', 'HLA-C_1', 'HLA-DRB5_2', 'phase', 'HLA-B_2', 'reads', 'HLA-DQB1_1', 'replicate', 'HLA-DRB4_2', 'HLA-DRB4_1', 'timepoint', 'HLA-DRB1_1', 'library'}).
This happened while the csv dataset builder was generating data using
gzip://IZ_0_CD4_y.airr.tsv::hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_CD4_y.airr.tsv.gz, ['hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/metadata.tsv', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_CD4_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_CD8_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_yF1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_yF2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_memory_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD4_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD8_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_yF1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_yF2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_memory_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_p0_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_p0_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_p0_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_reactive_IFNgneg.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_reactive_IFNgpos.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg1_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg1_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg1_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg1_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg1_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg2_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg2_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg2_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg2_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_0neg2_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_15_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_15_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_15_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_15_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_45_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_45_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_45_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_45_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_45_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_CD4_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_CD8_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_bulk_F1_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_bulk_F2_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_7_memory_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_reactive_IFNgneg.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_reactive_IFNgpos.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_reactive_IFNgpos_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_sorted_CD4_DR15.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Mst_sorted_CD8_DR15.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg1_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg1_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg1_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg1_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg1_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg2_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg2_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg2_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg2_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_0neg2_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_15_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_15_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_15_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_15_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_45_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_45_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_45_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_45_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_45_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_reactive_IFNgneg.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/NF_reactive_IFNgpos.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_14_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_14_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_14_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_14_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_1st_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_1st_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_1st_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_2nd_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_2nd_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_2nd_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_2nd_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_2nd_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_45_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_45_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_45_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Nest_7_CD4.airr.tsv.gz', 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'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_14_bulk_F1_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_14_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_14_bulk_F2_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_1st_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_1st_bulk_F1_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_1st_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_1st_bulk_F2_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_1st_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_1st_memory_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_CD4_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_CD8_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_bulk_F1_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_bulk_F2_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_2nd_memory_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_45_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_45_bulk_F1_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_45_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_45_bulk_F2_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_45_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_45_memory_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_CD4_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_CD8_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_bulk_F1_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_7_bulk_F2_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_p0_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_p0_bulk_F1_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_p0_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_p0_bulk_F2_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_reactive_IFNgposCD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_reactive_IFNgposCD4_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_reactive_IFNgposCD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_reactive_IFNgposCD8_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_CD4_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_CD8_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_bulk_yF1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_bulk_yF2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_memory_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_1st_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_1st_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_1st_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_2nd_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_2nd_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_2nd_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IFNgneg.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IFNgpos.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IL2neg.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IL2pos.airr.tsv.gz']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1837, in _prepare_split_single
writer.write_table(table)
~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2369, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2297, in cast_table_to_schema
raise CastError(
...<3 lines>...
)
datasets.table.CastError: Couldn't cast
sequence_id: int64
duplicate_count: int64
duplicate_frequency: double
locus: string
v_call: string
d_call: string
j_call: string
junction: string
junction_aa: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1350
to
{'file_name': Value('string'), 'sample_id': Value('string'), 'donor': Value('string'), 'vaccine': Value('string'), 'timepoint': Value('string'), 'day': Value('float64'), 'phase': Value('string'), 'cell_subset': Value('string'), 'replicate': Value('string'), 'library': Value('string'), 'chain': Value('string'), 'reads': Value('int64'), 'clonotypes': Value('int64'), 'HLA-A_1': Value('string'), 'HLA-A_2': Value('string'), 'HLA-B_1': Value('string'), 'HLA-B_2': Value('string'), 'HLA-C_1': Value('string'), 'HLA-C_2': Value('string'), 'HLA-DPB1_1': Value('string'), 'HLA-DPB1_2': Value('string'), 'HLA-DQA1_1': Value('string'), 'HLA-DQA1_2': Value('string'), 'HLA-DQB1_1': Value('string'), 'HLA-DQB1_2': Value('string'), 'HLA-DRB1_1': Value('string'), 'HLA-DRB1_2': Value('string'), 'HLA-DRB3_1': Value('string'), 'HLA-DRB3_2': Value('string'), 'HLA-DRB4_1': Value('string'), 'HLA-DRB4_2': Value('string'), 'HLA-DRB5_1': Value('string'), 'HLA-DRB5_2': Value('string'), 'raw_filename': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1683, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1839, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
...<4 lines>...
)
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 9 new columns ({'junction', 'junction_aa', 'd_call', 'j_call', 'duplicate_count', 'sequence_id', 'locus', 'duplicate_frequency', 'v_call'}) and 34 missing columns ({'donor', 'cell_subset', 'HLA-DRB5_1', 'day', 'HLA-DQB1_2', 'sample_id', 'HLA-DPB1_2', 'clonotypes', 'HLA-DRB3_1', 'raw_filename', 'file_name', 'HLA-DRB3_2', 'HLA-DQA1_2', 'HLA-DQA1_1', 'HLA-DRB1_2', 'HLA-DPB1_1', 'HLA-B_1', 'chain', 'vaccine', 'HLA-C_2', 'HLA-A_1', 'HLA-A_2', 'HLA-C_1', 'HLA-DRB5_2', 'phase', 'HLA-B_2', 'reads', 'HLA-DQB1_1', 'replicate', 'HLA-DRB4_2', 'HLA-DRB4_1', 'timepoint', 'HLA-DRB1_1', 'library'}).
This happened while the csv dataset builder was generating data using
gzip://IZ_0_CD4_y.airr.tsv::hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_CD4_y.airr.tsv.gz, ['hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/metadata.tsv', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_CD4_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_CD8_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_yF1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_bulk_yF2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_0_memory_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_15_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_60_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD4_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_CD8_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_yF1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_bulk_yF2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_7_memory_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_p0_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_p0_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_p0_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/IZ_reactive_IFNgneg.airr.tsv.gz', 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'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/Vkh_reactive_IFNgposCD8_r2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_CD4_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_CD8_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_bulk_yF1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_bulk_yF2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_0_memory_y.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_15_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_1st_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_1st_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_1st_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_2nd_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_2nd_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_2nd_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_45_memory.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_CD4.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_CD8.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_bulk_F1.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_7_bulk_F2.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IFNgneg.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IFNgpos.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IL2neg.airr.tsv.gz', 'hf://datasets/isalgo/airr_tbev_vac@a684813f478fd92244cd9bd93bc0bedb4e2f7404/samples/YB_reactive_IL2pos.airr.tsv.gz']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
file_name string | sample_id string | donor string | vaccine string | timepoint string | day float64 | phase string | cell_subset string | replicate string | library string | chain string | reads int64 | clonotypes int64 | HLA-A_1 string | HLA-A_2 string | HLA-B_1 string | HLA-B_2 string | HLA-C_1 string | HLA-C_2 string | HLA-DPB1_1 string | HLA-DPB1_2 string | HLA-DQA1_1 string | HLA-DQA1_2 string | HLA-DQB1_1 string | HLA-DQB1_2 string | HLA-DRB1_1 string | HLA-DRB1_2 string | HLA-DRB3_1 string | HLA-DRB3_2 string | HLA-DRB4_1 null | HLA-DRB4_2 null | HLA-DRB5_1 null | HLA-DRB5_2 null | raw_filename string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Nest_14_CD4.airr.tsv.gz | Nest_14_CD4 | Nest | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | CD4 | null | main | TRB | 815,129 | 382,026 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_14_CD4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_14_CD8.airr.tsv.gz | Nest_14_CD8 | Nest | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | CD8 | null | main | TRB | 752,688 | 181,651 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_14_CD8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_14_bulk_F1.airr.tsv.gz | Nest_14_bulk_F1 | Nest | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | bulk | F1 | main | TRB | 1,287,378 | 468,677 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_14_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_14_bulk_F2.airr.tsv.gz | Nest_14_bulk_F2 | Nest | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | bulk | F2 | main | TRB | 1,614,958 | 551,782 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_14_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_1st_bulk_F1.airr.tsv.gz | Nest_1st_bulk_F1 | Nest | tick-borne encephalitis inactivated (two-dose) | 1st | 0 | post_dose1 | bulk | F1 | main | TRB | 693,660 | 305,729 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_1st_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_1st_bulk_F2.airr.tsv.gz | Nest_1st_bulk_F2 | Nest | tick-borne encephalitis inactivated (two-dose) | 1st | 0 | post_dose1 | bulk | F2 | main | TRB | 790,508 | 344,615 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_1st_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_1st_memory.airr.tsv.gz | Nest_1st_memory | Nest | tick-borne encephalitis inactivated (two-dose) | 1st | 0 | post_dose1 | memory | null | main | TRB | 225,523 | 82,859 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_1st_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_2nd_CD4.airr.tsv.gz | Nest_2nd_CD4 | Nest | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | CD4 | null | main | TRB | 626,257 | 358,670 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_2nd_CD4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_2nd_CD8.airr.tsv.gz | Nest_2nd_CD8 | Nest | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | CD8 | null | main | TRB | 310,293 | 110,386 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_2nd_CD8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_2nd_bulk_F1.airr.tsv.gz | Nest_2nd_bulk_F1 | Nest | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | bulk | F1 | main | TRB | 635,846 | 311,363 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_2nd_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_2nd_bulk_F2.airr.tsv.gz | Nest_2nd_bulk_F2 | Nest | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | bulk | F2 | main | TRB | 660,706 | 320,322 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_2nd_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_2nd_memory.airr.tsv.gz | Nest_2nd_memory | Nest | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | memory | null | main | TRB | 326,035 | 118,795 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_2nd_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_45_bulk_F1.airr.tsv.gz | Nest_45_bulk_F1 | Nest | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | bulk | F1 | main | TRB | 903,103 | 339,754 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_45_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_45_bulk_F2.airr.tsv.gz | Nest_45_bulk_F2 | Nest | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | bulk | F2 | main | TRB | 739,299 | 291,821 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_45_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_45_memory.airr.tsv.gz | Nest_45_memory | Nest | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | memory | null | main | TRB | 162,282 | 57,558 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_45_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_7_CD4.airr.tsv.gz | Nest_7_CD4 | Nest | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD4 | null | main | TRB | 474,423 | 239,511 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_7_CD4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_7_CD8.airr.tsv.gz | Nest_7_CD8 | Nest | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD8 | null | main | TRB | 472,959 | 92,648 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_7_CD8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_7_bulk_F1.airr.tsv.gz | Nest_7_bulk_F1 | Nest | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F1 | main | TRB | 838,362 | 327,276 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_7_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_7_bulk_F2.airr.tsv.gz | Nest_7_bulk_F2 | Nest | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F2 | main | TRB | 743,258 | 297,143 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_7_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_p0_bulk_F1.airr.tsv.gz | Nest_p0_bulk_F1 | Nest | tick-borne encephalitis inactivated (two-dose) | p0 | 0 | baseline | bulk | F1 | main | TRB | 588,487 | 289,075 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_p0_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Nest_p0_bulk_F2.airr.tsv.gz | Nest_p0_bulk_F2 | Nest | tick-borne encephalitis inactivated (two-dose) | p0 | 0 | baseline | bulk | F2 | main | TRB | 628,155 | 298,561 | A*01:01:01 | A*25:01:01 | B*18:01:01 | B*57:01:01 | C*06:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*04:01:01 | DQA1*01:03:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*13:05:01 | DRB3*01:01:02 | DRB3*02:02:01 | null | null | null | null | Nest_p0_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_14_CD4.airr.tsv.gz | Ssh_14_CD4 | Ssh | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | CD4 | null | main | TRB | 608,728 | 318,546 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_14_CD4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_14_CD8.airr.tsv.gz | Ssh_14_CD8 | Ssh | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | CD8 | null | main | TRB | 274,202 | 133,007 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_14_CD8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_14_bulk_F1.airr.tsv.gz | Ssh_14_bulk_F1 | Ssh | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | bulk | F1 | main | TRB | 576,990 | 312,088 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_14_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_14_bulk_F2.airr.tsv.gz | Ssh_14_bulk_F2 | Ssh | tick-borne encephalitis inactivated (two-dose) | 14 | 14 | early | bulk | F2 | main | TRB | 533,034 | 313,979 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_14_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_1st_bulk_F1.airr.tsv.gz | Ssh_1st_bulk_F1 | Ssh | tick-borne encephalitis inactivated (two-dose) | 1st | 0 | post_dose1 | bulk | F1 | main | TRB | 172,510 | 116,340 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_1st_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_1st_bulk_F2.airr.tsv.gz | Ssh_1st_bulk_F2 | Ssh | tick-borne encephalitis inactivated (two-dose) | 1st | 0 | post_dose1 | bulk | F2 | main | TRB | 210,223 | 138,882 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_1st_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_1st_memory.airr.tsv.gz | Ssh_1st_memory | Ssh | tick-borne encephalitis inactivated (two-dose) | 1st | 0 | post_dose1 | memory | null | main | TRB | 209,672 | 91,454 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_1st_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_2nd_CD4.airr.tsv.gz | Ssh_2nd_CD4 | Ssh | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | CD4 | null | main | TRB | 620,501 | 338,249 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_2nd_CD4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_2nd_CD8.airr.tsv.gz | Ssh_2nd_CD8 | Ssh | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | CD8 | null | main | TRB | 443,255 | 202,593 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_2nd_CD8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_2nd_bulk_F1.airr.tsv.gz | Ssh_2nd_bulk_F1 | Ssh | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | bulk | F1 | main | TRB | 544,222 | 326,292 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_2nd_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_2nd_bulk_F2.airr.tsv.gz | Ssh_2nd_bulk_F2 | Ssh | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | bulk | F2 | main | TRB | 711,526 | 404,982 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_2nd_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_2nd_memory.airr.tsv.gz | Ssh_2nd_memory | Ssh | tick-borne encephalitis inactivated (two-dose) | 2nd | 30 | post_dose2 | memory | null | main | TRB | 418,799 | 139,662 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_2nd_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_45_bulk_F1.airr.tsv.gz | Ssh_45_bulk_F1 | Ssh | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | bulk | F1 | main | TRB | 800,045 | 429,828 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_45_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_45_bulk_F2.airr.tsv.gz | Ssh_45_bulk_F2 | Ssh | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | bulk | F2 | main | TRB | 514,244 | 313,764 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_45_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_45_memory.airr.tsv.gz | Ssh_45_memory | Ssh | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | memory | null | main | TRB | 230,492 | 93,742 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_45_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_7_CD4.airr.tsv.gz | Ssh_7_CD4 | Ssh | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD4 | null | main | TRB | 607,149 | 360,279 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_7_CD4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_7_CD8.airr.tsv.gz | Ssh_7_CD8 | Ssh | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD8 | null | main | TRB | 462,303 | 218,108 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_7_CD8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_7_bulk_F1.airr.tsv.gz | Ssh_7_bulk_F1 | Ssh | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F1 | main | TRB | 540,006 | 332,938 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_7_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_7_bulk_F2.airr.tsv.gz | Ssh_7_bulk_F2 | Ssh | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F2 | main | TRB | 600,071 | 366,911 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_7_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_p0_bulk_F1.airr.tsv.gz | Ssh_p0_bulk_F1 | Ssh | tick-borne encephalitis inactivated (two-dose) | p0 | 0 | baseline | bulk | F1 | main | TRB | 506,219 | 311,333 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_p0_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Ssh_p0_bulk_F2.airr.tsv.gz | Ssh_p0_bulk_F2 | Ssh | tick-borne encephalitis inactivated (two-dose) | p0 | 0 | baseline | bulk | F2 | main | TRB | 611,746 | 362,703 | A*02:01:01 | A*11:01:01 | B*07:02:01 | B*35:03:01 | C*07:02:01 | C*12:03:01 | DPB1*03:01:01 | DPB1*03:01:01 | DQA1*03:01:01 | DQA1*05:05:01 | DQB1*03:01:01 | DQB1*03:04:01 | DRB1*04:08:01 | DRB1*11:01:01 | DRB3*02:02:01 | DRB3*02:02:01 | null | null | null | null | SSh_p0_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_bulk_F1.airr.tsv.gz | IZ_0_bulk_F1 | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | bulk | F1 | main | TRB | 919,422 | 539,518 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_bulk_F2.airr.tsv.gz | IZ_0_bulk_F2 | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | bulk | F2 | main | TRB | 910,571 | 527,363 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_memory.airr.tsv.gz | IZ_0_memory | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | memory | null | main | TRB | 533,663 | 122,937 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_CD4_y.airr.tsv.gz | IZ_0_CD4_y | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | CD4 | y | main | TRB | 291,756 | 191,422 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0y_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_CD8_y.airr.tsv.gz | IZ_0_CD8_y | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | CD8 | y | main | TRB | 107,105 | 38,385 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0y_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_bulk_yF1.airr.tsv.gz | IZ_0_bulk_yF1 | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | bulk | yF1 | main | TRB | 331,227 | 220,268 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0y_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_bulk_yF2.airr.tsv.gz | IZ_0_bulk_yF2 | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | bulk | yF2 | main | TRB | 357,194 | 234,141 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0y_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_0_memory_y.airr.tsv.gz | IZ_0_memory_y | IZ | tick-borne encephalitis inactivated (two-dose) | 0 | 0 | baseline | memory | y | main | TRB | 90,838 | 44,927 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_0y_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_15_CD4.airr.tsv.gz | IZ_15_CD4 | IZ | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | CD4 | null | main | TRB | 484,066 | 279,330 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_15_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_15_CD8.airr.tsv.gz | IZ_15_CD8 | IZ | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | CD8 | null | main | TRB | 181,588 | 76,321 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_15_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_15_bulk_F1.airr.tsv.gz | IZ_15_bulk_F1 | IZ | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | bulk | F1 | main | TRB | 622,120 | 400,168 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_15_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_15_bulk_F2.airr.tsv.gz | IZ_15_bulk_F2 | IZ | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | bulk | F2 | main | TRB | 621,252 | 396,071 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_15_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_15_memory.airr.tsv.gz | IZ_15_memory | IZ | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | memory | null | main | TRB | 335,459 | 117,904 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_15_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_60_CD4.airr.tsv.gz | IZ_60_CD4 | IZ | tick-borne encephalitis inactivated (two-dose) | 60 | 60 | peak | CD4 | null | main | TRB | 595,905 | 340,623 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_60_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_60_CD8.airr.tsv.gz | IZ_60_CD8 | IZ | tick-borne encephalitis inactivated (two-dose) | 60 | 60 | peak | CD8 | null | main | TRB | 379,828 | 134,205 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_60_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_60_bulk_F1.airr.tsv.gz | IZ_60_bulk_F1 | IZ | tick-borne encephalitis inactivated (two-dose) | 60 | 60 | peak | bulk | F1 | main | TRB | 691,094 | 430,576 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_60_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_60_bulk_F2.airr.tsv.gz | IZ_60_bulk_F2 | IZ | tick-borne encephalitis inactivated (two-dose) | 60 | 60 | peak | bulk | F2 | main | TRB | 645,811 | 410,041 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_60_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_60_memory.airr.tsv.gz | IZ_60_memory | IZ | tick-borne encephalitis inactivated (two-dose) | 60 | 60 | peak | memory | null | main | TRB | 389,845 | 120,548 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_60_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_CD4.airr.tsv.gz | IZ_7_CD4 | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD4 | null | main | TRB | 428,364 | 246,314 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_CD8.airr.tsv.gz | IZ_7_CD8 | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD8 | null | main | TRB | 311,012 | 124,154 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_bulk_F1.airr.tsv.gz | IZ_7_bulk_F1 | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F1 | main | TRB | 640,127 | 414,315 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_bulk_F2.airr.tsv.gz | IZ_7_bulk_F2 | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F2 | main | TRB | 638,089 | 410,609 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_memory.airr.tsv.gz | IZ_7_memory | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | memory | null | main | TRB | 285,141 | 106,791 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_CD4_y.airr.tsv.gz | IZ_7_CD4_y | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD4 | y | main | TRB | 314,670 | 184,534 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7y_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_CD8_y.airr.tsv.gz | IZ_7_CD8_y | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD8 | y | main | TRB | 234,003 | 50,417 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7y_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_bulk_yF1.airr.tsv.gz | IZ_7_bulk_yF1 | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | yF1 | main | TRB | 606,689 | 309,860 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7y_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_bulk_yF2.airr.tsv.gz | IZ_7_bulk_yF2 | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | yF2 | main | TRB | 563,802 | 305,808 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7y_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_7_memory_y.airr.tsv.gz | IZ_7_memory_y | IZ | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | memory | y | main | TRB | 89,613 | 46,574 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_7y_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_reactive_IFNgneg.airr.tsv.gz | IZ_reactive_IFNgneg | IZ | tick-borne encephalitis inactivated (two-dose) | reactive | null | reactive | IFNg- | null | main | TRB | 31,559 | 23,410 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_IFNg_minus_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_reactive_IFNgpos.airr.tsv.gz | IZ_reactive_IFNgpos | IZ | tick-borne encephalitis inactivated (two-dose) | reactive | null | reactive | IFNg+ | null | main | TRB | 2,384 | 1,567 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_IFNg_plus_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_p0_bulk_F1.airr.tsv.gz | IZ_p0_bulk_F1 | IZ | tick-borne encephalitis inactivated (two-dose) | p0 | 0 | baseline | bulk | F1 | main | TRB | 1,083,158 | 666,075 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_p0_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_p0_bulk_F2.airr.tsv.gz | IZ_p0_bulk_F2 | IZ | tick-borne encephalitis inactivated (two-dose) | p0 | 0 | baseline | bulk | F2 | main | TRB | 1,112,994 | 673,119 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_p0_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
IZ_p0_memory.airr.tsv.gz | IZ_p0_memory | IZ | tick-borne encephalitis inactivated (two-dose) | p0 | 0 | baseline | memory | null | main | TRB | 519,964 | 154,570 | A*01 | A*30:02:01 | B*08 | B*13:02 | C*06 | C*07 | null | null | null | null | DQB1*02:01:01 | DQB1*06:02:01 | DRB1*03:01:01 | DRB1*15:01:01 | DRB3*01:01:02 | DRB3*01:01:02 | null | null | null | null | TBEV_IZ_p0_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg1_CD4.airr.tsv.gz | Mst_0neg1_CD4 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-1 | 0 | baseline | CD4 | null | main | TRB | 128,229 | 85,943 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-1_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg1_CD8.airr.tsv.gz | Mst_0neg1_CD8 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-1 | 0 | baseline | CD8 | null | main | TRB | 299,819 | 76,866 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-1_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg1_bulk_F1.airr.tsv.gz | Mst_0neg1_bulk_F1 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-1 | 0 | baseline | bulk | F1 | main | TRB | 343,336 | 161,871 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-1_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg1_bulk_F2.airr.tsv.gz | Mst_0neg1_bulk_F2 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-1 | 0 | baseline | bulk | F2 | main | TRB | 384,874 | 167,170 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-1_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg1_memory.airr.tsv.gz | Mst_0neg1_memory | Mst | tick-borne encephalitis inactivated (two-dose) | 0-1 | 0 | baseline | memory | null | main | TRB | 150,208 | 67,902 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-1_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg2_CD4.airr.tsv.gz | Mst_0neg2_CD4 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-2 | 0 | baseline | CD4 | null | main | TRB | 65,188 | 41,813 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-2_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg2_CD8.airr.tsv.gz | Mst_0neg2_CD8 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-2 | 0 | baseline | CD8 | null | main | TRB | 64,901 | 21,129 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-2_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg2_bulk_F1.airr.tsv.gz | Mst_0neg2_bulk_F1 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-2 | 0 | baseline | bulk | F1 | main | TRB | 50,138 | 27,779 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-2_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg2_bulk_F2.airr.tsv.gz | Mst_0neg2_bulk_F2 | Mst | tick-borne encephalitis inactivated (two-dose) | 0-2 | 0 | baseline | bulk | F2 | main | TRB | 70,293 | 34,926 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-2_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_0neg2_memory.airr.tsv.gz | Mst_0neg2_memory | Mst | tick-borne encephalitis inactivated (two-dose) | 0-2 | 0 | baseline | memory | null | main | TRB | 31,533 | 16,418 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_0-2_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_15_CD4.airr.tsv.gz | Mst_15_CD4 | Mst | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | CD4 | null | main | TRB | 343,942 | 180,044 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_15_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_15_CD8.airr.tsv.gz | Mst_15_CD8 | Mst | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | CD8 | null | main | TRB | 127,549 | 46,093 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_15_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_15_bulk_F1.airr.tsv.gz | Mst_15_bulk_F1 | Mst | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | bulk | F1 | main | TRB | 632,533 | 272,220 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_15_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_15_bulk_F2.airr.tsv.gz | Mst_15_bulk_F2 | Mst | tick-borne encephalitis inactivated (two-dose) | 15 | 15 | early | bulk | F2 | main | TRB | 736,663 | 297,154 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_15_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_45_CD4.airr.tsv.gz | Mst_45_CD4 | Mst | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | CD4 | null | main | TRB | 26,055 | 21,205 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_45_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_45_CD8.airr.tsv.gz | Mst_45_CD8 | Mst | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | CD8 | null | main | TRB | 485,193 | 125,231 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_45_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_45_bulk_F1.airr.tsv.gz | Mst_45_bulk_F1 | Mst | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | bulk | F1 | main | TRB | 729,544 | 336,455 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_45_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_45_bulk_F2.airr.tsv.gz | Mst_45_bulk_F2 | Mst | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | bulk | F2 | main | TRB | 681,033 | 321,761 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_45_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_45_memory.airr.tsv.gz | Mst_45_memory | Mst | tick-borne encephalitis inactivated (two-dose) | 45 | 45 | peak | memory | null | main | TRB | 410,718 | 138,679 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_45_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_sorted_CD4_DR15.airr.tsv.gz | Mst_sorted_CD4_DR15 | Mst | tick-borne encephalitis inactivated (two-dose) | sorted | null | reactive | CD4_DR15 | null | main | TRB | 22,826 | 5,052 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_4_DR_15_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_7_CD4.airr.tsv.gz | Mst_7_CD4 | Mst | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD4 | null | main | TRB | 65,176 | 41,862 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_7_4_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_7_CD8.airr.tsv.gz | Mst_7_CD8 | Mst | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | CD8 | null | main | TRB | 64,771 | 21,088 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_7_8_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_7_bulk_F1.airr.tsv.gz | Mst_7_bulk_F1 | Mst | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F1 | main | TRB | 49,487 | 27,608 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_7_F1_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_7_bulk_F2.airr.tsv.gz | Mst_7_bulk_F2 | Mst | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | bulk | F2 | main | TRB | 72,854 | 35,902 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_7_F2_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
Mst_7_memory.airr.tsv.gz | Mst_7_memory | Mst | tick-borne encephalitis inactivated (two-dose) | 7 | 7 | early | memory | null | main | TRB | 31,964 | 16,579 | A*03:02:01 | A*26 | B*08:01 | B*38:01:01 | C*07 | C*12 | null | null | null | null | DQB1*05:03:01 | DQB1*06:03:01 | DRB1*13:01:01 | DRB1*14:01:01 | DRB3*02:02:01 | DRB3*02:24 | null | null | null | null | TBEV_MStr_7_Mem_R1.mf.fastq.vdjca.clns_TRB.txt.gz |
End of preview.
Tick-borne encephalitis vaccine — longitudinal TCRβ repertoires
Deep TCRβ repertoire time-course of 11 healthy donors receiving a two-dose inactivated
tick-borne-encephalitis (TBE) vaccine, sampled longitudinally before and after immunization. A companion
vaccine cohort to isalgo/airr_yfv19 (yellow fever) and isalgo/airr_flu_vac (influenza). The study
recovered several overlapping waves of vaccine-associated T-cell response (302–1706 vaccine-associated
TCRβ clonotypes per donor; 17 HLA-shared response motifs).
Includes antigen-reactive sorted fractions (IFNγ⁺/IFNγ⁻, IL2⁺, and HLA-DR-tetramer sorts) alongside bulk and CD4/CD8/memory subsets — a human analog of a tetramer-sort ground truth for vaccine-response detection.
Cite as — Sycheva AL, Komech EA, Pogorelyy MV, Minervina AA, Urazbakhtin SZ, Salnikova MA, Vorovitch MF, Kopantzev EP, Zvyagin IV, Komkov AY, Mamedov IZ, Lebedev YB. "Inactivated tick-borne encephalitis vaccine elicits several overlapping waves of T cell response." Front Immunol 2022;13:970285. DOI 10.3389/fimmu.2022.970285 · PMID 36091004.
Contents
| File | What |
|---|---|
samples/<sample_id>.airr.tsv.gz |
287 per-sample AIRR TRB clonotype tables |
metadata.tsv |
one row per sample (donor, vaccine, timepoint, subset, depth, class I+II HLA) |
Clonotype tables (samples/*.airr.tsv.gz)
Tab-separated AIRR Rearrangement export, one clonotype per row:
sequence_id, duplicate_count, duplicate_frequency, locus, v_call, d_call, j_call, junction, junction_aa.
duplicate_countis the clone read count (the abundance to use);duplicate_frequencyits within-sample fraction.junction/junction_aaare the anchor-included CDR3 (conserved Cys104 … Phe/Trp118), i.e. AIRR junction, not the anchor-excluded IMGTcdr3.v_call/d_call/j_callare gene-level IMGT names (TRBV5-1,TRBD2); the export carries no allele resolution, so none is fabricated.
Converted from the source MiXCR export (cloneId, cloneCount, cloneFraction, nSeqCDR3, aaSeqCDR3, bestVGene, bestDGene, bestJGene; some libraries use the allVGenes/allDGenes/allJGenes variant, best
hit taken).
metadata.tsv
Key file_name (= the samples/ basename). Columns:
- design —
sample_id,donor(11 pseudonyms),vaccine,timepoint,day(numeric where fixed),phase(baseline/early/peak/late/post_dose1/post_dose2/reactive),cell_subset(bulk/memory/CD4/CD8/IFNg+/IFNg-/IL2+/IFNg+CD4/CD4_DR15…),replicate(F1/F2),library(maindeep /smallshallow),chain(TRB). - depth —
reads(Σduplicate_count),clonotypes(rows). - HLA class I —
HLA-A_1, HLA-A_2, HLA-B_1, HLA-B_2, HLA-C_1, HLA-C_2. - HLA class II —
HLA-DPB1_{1,2}, HLA-DQA1_{1,2}, HLA-DQB1_{1,2}, HLA-DRB1_{1,2}, HLA-DRB3_{1,2}, HLA-DRB4_{1,2}, HLA-DRB5_{1,2}(empty cells = not typed / locus absent). - provenance —
raw_filename(original cluster basename; keep for audit).
Notes / caveats
- Design metadata parsed from filenames (two naming schemes:
<donor>_<tp>_<subset>andTBEV_<donor>_…). Donor tokens are normalized to the HLA-table keys (SSh→Ssh,MStr→Mst,VK/VKh→Vkh,TCh→Tch).raw_filenamepreserves the original for audit. - Timepoints:
daycounts from the first immunization.1st/2ndare the two vaccine doses (day0 and 30).0y/7yare days 0 and 7 of a separate replicate series flaggedreplicate=y(its bulk pairs areyF1/yF2). library=smallsamples are shallow libraries (incl. some IFNγ/IL2/DR-sorted reactive fractions).- Donor
Vkh(50 samples) aggregates two filename batches (VK_*andVKh_*) — the source has a singleVkhHLA genotype, so both are treated as the same donor. - Where two libraries share the same donor/timepoint/subset (VK/VKh dual batches, or a sample present in
both
mainandsmalltiers), the secondsample_idis suffixed_r2(35 samples);raw_filenamekeeps the original name for audit. - Vaccine-associated clonotype lists (302–1706/donor) and the 17 HLA-shared motifs from the paper are
not yet shipped; the reactive-sorted fractions (
IFNg±,IL2+) serve as the response signal.
Usage
Each samples/*.airr.tsv.gz is a gzipped AIRR-Rearrangement TSV; metadata.tsv keys them by
file_name. Load with any TSV reader (e.g. pandas.read_csv(..., sep="\t")).
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