pmhc_data / immunogenicity

Commit History

immunogenicity: the MHC class-II corpus the shipped class-II model is fitted on
f437d55

mikessh commited on

immunogenicity: deposit the staged IEDB export, the root of the provenance chain
6d404d5

mikessh Claude Opus 5 commited on

immunogenicity: legacy arms, and species keyed on the restricting allele
a038152

mikessh commited on

immunogenicity: rebuild from the full IEDB export, with an allele for every record
70a8c99

mikessh commited on

Split neoantigens from immunogenicity; add per-directory SOURCES with verified citations and audits
d48d123

mikessh Claude Opus 5 commited on

Add NCI complete neoantigen screen (iScience 2022 S6) as an immunogenicity variant
5bf4fce

mikessh commited on

Add neoag_tested_hsa: 717 HLA-restricted rows from the same IEDB mouse export (HLA-Tg mice + human hosts)
95d8d4b
verified

mikessh commited on

Add neoag_tested_mmu: 1977 murine tested neo-epitopes from IEDB (mhc_species=MusMusculus)
8cff104
verified

mikessh commited on

neoag: primary datasets take precedence over CEDAR/Neopep; trim blank cols from iedb_labeled
00ea153

mikessh Claude Opus 4.8 commited on

Rework #9 into workhorse neoag DB (tested + candidates) + HLA population freqs
89a5bee

mikessh Claude Opus 4.8 commited on

Add v1 data compendium: immunogenicity labels/benchmarks + similarity references
1ebb8a6

mikessh Claude Opus 4.8 commited on