Datasets:

---

isalgo

/

pmhc_data

like 0

Follow

Immunosequencing Algorithms Laboratory 4

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 3 new columns ({'median_tpm', 'q75_tpm', 'q25_tpm'}) and 2 missing columns ({'unit', 'abundance'}).

This happened while the csv dataset builder was generating data using

gzip://reference_expression.tsv::hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/reference_expression.tsv.gz, ['hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/protein_abundance_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/reference_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/reference_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_iedb_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_iedb_full_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/hla_pop_freqs.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/iedb_labeled.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/immunogenicity_legacy_arms.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/kesmir_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/kesmir_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/cancer_targets_tsarina.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/tissue_self_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/viral_foreign_iedb.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/viral_orfs_gse272406.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_complete_minigenes.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_gartner_mmp.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_gartner_nmers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_gartner_samples.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_candidates.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_tested.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_tested_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_tested_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoantigens_tested_peptides.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025_deg.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025_drivers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025_gsea.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/pmhc/pmhc_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/pmhc/pmhc_shortlist.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/summary.tsv', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/tcga/hla_coverage.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/tcga/tcga_neoantigens.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_immunopeptidome.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_immunopeptidome_mmu.tsv.gz']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1848, in _prepare_split_single
                  writer.write_table(table)
                  ~~~~~~~~~~~~~~~~~~^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                  ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2306, in cast_table_to_schema
                  raise CastError(
                  ...<3 lines>...
                  )
              datasets.table.CastError: Couldn't cast
              key: string
              key_type: string
              source: string
              context: string
              median_tpm: double
              q25_tpm: double
              q75_tpm: double
              n: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1179
              to
              {'key': Value('string'), 'key_type': Value('string'), 'source': Value('string'), 'context': Value('string'), 'abundance': Value('float64'), 'unit': Value('string'), 'n': Value('int64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ~~~~~~~~~~~~~~~~~~~~~~~~~^
                      builder, max_dataset_size_bytes=max_dataset_size_bytes
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  )
                  ^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                  ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^
                      gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  ):
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1850, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
                  ...<4 lines>...
                  )
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 3 new columns ({'median_tpm', 'q75_tpm', 'q25_tpm'}) and 2 missing columns ({'unit', 'abundance'}).
              
              This happened while the csv dataset builder was generating data using
              
              gzip://reference_expression.tsv::hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/reference_expression.tsv.gz, ['hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/protein_abundance_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/reference_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/expression/reference_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_iedb_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_iedb_full_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/chowell_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/hla_pop_freqs.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/iedb_labeled.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/immunogenicity_legacy_arms.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/kesmir_rebuilt.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/immunogenicity/kesmir_rebuilt_hla_matched.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/cancer_targets_tsarina.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/tissue_self_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/viral_foreign_iedb.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/ligandome/viral_orfs_gse272406.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_complete_minigenes.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_gartner_mmp.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_gartner_nmers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/nci_gartner_samples.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_candidates.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_tested.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_tested_hsa.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoag_tested_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/neoantigens_tested_peptides.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025_deg.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025_drivers.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/neoantigens/sahin_tnbc_2025_gsea.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/pmhc/pmhc_full.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/pmhc/pmhc_shortlist.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/summary.tsv', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/tcga/hla_coverage.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/tcga/tcga_neoantigens.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_expression.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_expression_mmu.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_immunopeptidome.tsv.gz', 'hf://datasets/isalgo/pmhc_data@2b11522f1abbbcc7a956f8f350f22b40b748fda6/thymus/thymus_immunopeptidome_mmu.tsv.gz']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)