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# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
# This file contains code for reading metadata from the build system into
# data structures.
r"""Read build frontend fi... | cstipkovic/spidermonkey-research | python/mozbuild/mozbuild/frontend/reader.py | Python | mpl-2.0 | 53,577 | [
"VisIt"
] | 6ff21f755fae8ada32348f28a8799f112632492e8152cc7929ca70bd91f072bc |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2010 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Software F... | andrebellafronte/stoq | plugins/books/bookssearch.py | Python | gpl-2.0 | 4,597 | [
"VisIt"
] | ee0d42f2799c06696176b4aa1f9f7772c457ab18063544245bbcdea5a9dad907 |
type_bodies = {
'Human': 'Human',
'Muffalo': 'QuadrupedAnimalWithHooves',
'Gazelle': 'QuadrupedAnimalWithHooves',
'Iguana': 'QuadrupedAnimalWithClawsTailAndJowl',
'Rhinoceros': 'QuadrupedAnimalWithHoovesAndHorn',
'Dromedary': 'QuadrupedAnimalWithHoovesAndHump',
'Chicken': 'Bird',
'Pig': ... | afit/rimworld-save-migrator | versions/b18tables.py | Python | mit | 14,784 | [
"Elk"
] | 337bda573c143d8ea314a4c05e35f01c36dda3c5a3531c1811d4555006687a39 |
import king_phisher.plugins as plugin_opts
import king_phisher.server.database.manager as db_manager
import king_phisher.server.database.models as db_models
import king_phisher.server.plugins as plugins
import king_phisher.server.signals as signals
import king_phisher.utilities as utilities
try:
import pushbullet
exc... | securestate/king-phisher-plugins | server/pushbullet_notifications.py | Python | bsd-3-clause | 3,533 | [
"VisIt"
] | 18feb5ea07b219d3b604dbc0b9ea7b555ccd240935e1f48f1fe05cc3519e5f04 |
# -*- coding: utf-8 -*-
from copy import deepcopy
import numpy as np
from crystals import Crystal
from skued import powdersim
def test_powdersim_return_shape():
"""Test that the return shape of powdersim() is as expected"""
q = np.linspace(2, 10, 200)
pattern = powdersim(Crystal.from_database("C"), q)
... | LaurentRDC/scikit-ued | skued/simulation/tests/test_powdersim.py | Python | gpl-3.0 | 992 | [
"CRYSTAL"
] | 3dbe720ca9be957f8d1d0768dca75c52a8254b5e639c8511f11b64f8799f5d93 |
"""
Gaussian Mixture Models.
This implementation corresponds to frequentist (non-Bayesian) formulation
of Gaussian Mixture Models.
"""
# Author: Ron Weiss <ronweiss@gmail.com>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Bertrand Thirion <bertrand.thirion@inria.fr>
import warnings
import numpy as... | costypetrisor/scikit-learn | sklearn/mixture/gmm.py | Python | bsd-3-clause | 30,996 | [
"Gaussian"
] | 0bfb302854614ae2dd6465fa9aef51c8883de0ecd93106e5b15425046c269d19 |
# ----------------------------------------------------------------------------
# Copyright 2015-2016 Nervana Systems Inc.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apa... | Jokeren/neon | tests/test_recurrent.py | Python | apache-2.0 | 11,602 | [
"Gaussian"
] | 5334f7e4d8cdae33c34c7c6846c745785eae730382dfedbe963562d06247ef7c |
data = """<?xml version="1.0" encoding="utf-8"?>
<!-- Created with PySCeS CBM (0.7.0) on Thu, 20 Feb 2014 14:43:49 by timo -->
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version1" xmlns:html="http://www.w3.org/1999/xhtml" level="3" version="1" fbc... | SystemsBioinformatics/vonda | vonda/models/Ecoli_Carlson2003_sbml3.py | Python | gpl-3.0 | 56,465 | [
"PySCeS"
] | 443e0c047fbdacbe221c50f67d90ea28e9edb34cea69186f1ab9e8615135d9be |
""" Test the API for Gyms """
from app.tests.api.personalised.gym_gym_visit_resource.gym_visit_common \
import GymVisitAPICommonCase
class TestGymVisitResourceHttpVerbs(GymVisitAPICommonCase):
""" Test the API methods for the Gym """
def test_not_logged_in(self):
"""
Test that when user ... | Gimpneek/exclusive-raid-gym-tracker | app/tests/api/personalised/gym_gym_visit_resource/test_http_verbs.py | Python | gpl-3.0 | 1,640 | [
"VisIt"
] | 60061520a067cf823ab83bcde9082a2063c42caa19f2035d422a2429b96b9280 |
# -*- coding: utf-8 -*-
from __future__ import absolute_import
from spark.node import Neuron
class Accumulator(Neuron):
'''
TODO.
'''
def transfer(self, potential):
'''
TODO.
'''
return potential
def __repr__(self):
return "Accumulator()"
| CtrlC-Root/cse5526 | spark/rbf/accumulator.py | Python | mit | 306 | [
"NEURON"
] | 1037c4eb394514f56617e6fbe65bcb4ffc3baa81d119560307eec7cf8e0a9892 |
import math
import numpy as np
from numpy import linalg
from pymol.cgo import BEGIN, COLOR, TRIANGLES, VERTEX, NORMAL, END
from pymol import cmd
def vertex(a1, a2, a3, u, v, M, r0):
vrtx = M.dot(np.array([
a1 * math.cos(u) * math.cos(v),
a2 * math.cos(u) * math.sin(v),
a3 * ma... | vlasenkov/pymol-iellipsoid | iellipsoid.py | Python | mit | 3,747 | [
"PyMOL"
] | 0dbdde549139fdf0735617f93c8863893990d78c6792cc753f65a5d844069f55 |
#!/usr/bin/env python
# -*- coding=utf-8 -*-
import sys
import os
import numpy as np
from numpy import array as npa
import matplotlib as mpl
import matplotlib.pyplot as plt
import pymatgen as mg
from pymatgen.io.vasp.outputs import Vasprun, Procar, BSVasprun
from pymatgen.symmetry.bandstructure import HighSymmK... | neelravi/vasp | bandplotting-orbital-resolved-pymatgen.py | Python | gpl-3.0 | 1,885 | [
"VASP",
"pymatgen"
] | b9f40727bea1579833da80fb6197eec026b35eeec5dbfa8af63be302b4ee73eb |
#from distutils.core import setup
#from distutils.extension import Extension
#from distutils.command.sdist import sdist as _sdist
from setuptools import setup
from setuptools import Extension
from setuptools.command.sdist import sdist as _sdist
from fmrc import util
#borrowed from online code: http://stackoverflow.co... | sgreenstein/fmrc | setup.py | Python | mit | 1,681 | [
"pysam"
] | b63f988379ea40f0236ae398b11eb78d92ffb0d73ac64954e477e888aa727dad |
# -*- coding: utf-8 -*-
"""
Integration test cases for ACMEv2 as implemented by boulder-wfe2.
"""
import subprocess
import requests
import datetime
import time
import os
import json
import re
import OpenSSL
from cryptography import x509
from cryptography.hazmat.backends import default_backend
from cryptography.hazmat... | bmw/boulder | test/v2_integration.py | Python | mpl-2.0 | 67,383 | [
"BLAST"
] | 95e8d57974bb19b51f32cd427a9e6c753a2942a19d69fb0f91a8481375cd6c52 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''Views tests for the OSF.'''
from __future__ import absolute_import
import unittest
import json
import datetime as dt
import mock
import httplib as http
import math
import time
from nose.tools import * # noqa PEP8 asserts
from tests.test_features import requires_search... | petermalcolm/osf.io | tests/test_views.py | Python | apache-2.0 | 181,333 | [
"Brian"
] | 9773c1bb947162ee8610426319a27b2cfdee80bca35652be87e9ea7e63eaa3aa |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides utility classes for string operations.
"""
from __future__ import unicode_literals
import re
from fractions import Fraction
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2011... | matk86/pymatgen | pymatgen/util/string.py | Python | mit | 4,957 | [
"pymatgen"
] | 741ee09085c309df94a42d45ce99ba193ed9d9c1bc7f2a4a1034c0f104947aed |
#!/usr/bin/env python3
# -*- encoding: utf-8 -*-
""" multiple clustering algorithms """
import numpy as np
import matplotlib.pyplot as plt
from .HelperFunctions import get_colors
from mpl_toolkits.mplot3d import Axes3D
from random import shuffle
class Cluster:
def __init__(self, points):
# Attributes
... | hotator/python-clustering | cluster/base/Cluster.py | Python | gpl-2.0 | 3,165 | [
"exciting"
] | 74d334e6509799c8bbfc1481c4946e25dec0e0ef498d78c395ed22dc4a4b0877 |
#!/usr/bin/env python
import vtk
def main():
value = 2.0
colors = vtk.vtkNamedColors()
implicitFunction = vtk.vtkSuperquadric()
implicitFunction.SetPhiRoundness(2.5)
implicitFunction.SetThetaRoundness(.5)
# Sample the function.
sample = vtk.vtkSampleFunction()
sample.SetSampl... | lorensen/VTKExamples | src/Python/ImplicitFunctions/SampleFunction.py | Python | apache-2.0 | 2,027 | [
"VTK"
] | b6e31cadf92e06166b9442c370871dbf93c7a6d99cd9ae25b0628ba062573954 |
"""Useful fitting functions."""
from scipy.optimize import curve_fit
from scipy.signal import medfilt
import numpy as np
import traceback
import warnings
from collections.abc import Iterable
from .utils import mad, HAS_MPL
__all__ = [
"contiguous_regions",
"ref_std",
"ref_mad",
"linear_fun",
"lin... | matteobachetti/srt-single-dish-tools | srttools/fit.py | Python | bsd-3-clause | 19,985 | [
"Gaussian"
] | 4daa215e5dae3a583cf9f014ac442ac1ca35c933556ef1477b64ec7cfd6b009a |
# Copyright 2015 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | panmari/tensorflow | tensorflow/python/ops/control_flow_grad.py | Python | apache-2.0 | 7,949 | [
"VisIt"
] | 213f3a1793a4c85c72e86ab01d250b3201155fa493ea883e52971a85b67f63de |
import sys, logging, os, time, re,json,hashlib
import xml.dom.minidom
SPLUNK_HOME = os.environ.get("SPLUNK_HOME")
RESPONSE_HANDLER_INSTANCE = None
SPLUNK_PORT = 8089
STANZA = None
SESSION_TOKEN = None
REGEX_PATTERN = None
#dynamically load in any eggs in /etc/apps/tesla_ta/bin
EGG_DIR = SPLUNK_HOME + "/etc/apps/tesl... | damiendallimore/SplunkModularInputsPythonFramework | implementations/tesla/bin/tesla.py | Python | apache-2.0 | 18,139 | [
"VisIt"
] | a5b184244d0ff4a1a6b8e2958c82a712d151f884de191ee4089d54215bab5d84 |
''' ResourceStatusDB:
This module provides definition of the DB tables, and methods to access them.
Written using sqlalchemy declarative_base
For extending the ResourceStatusDB tables:
1) In the extended module, call:
from DIRAC.ResourceStatusSystem.DB.ResourceStatusDB import rmsBase, TABLESLIS... | Andrew-McNab-UK/DIRAC | ResourceStatusSystem/DB/ResourceStatusDB.py | Python | gpl-3.0 | 23,417 | [
"DIRAC"
] | e12fc84da539fb5ea452d86df8f587bcb0cc649964f0cd0572fd4052f150c005 |
# Copyright 2020 DeepMind Technologies Limited. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | deepmind/dm-haiku | examples/vae.py | Python | apache-2.0 | 6,886 | [
"Gaussian"
] | 04d385b381d8393c3872400c991a697c483593da5d5b454f0029bdc31ccb48cb |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/qcdb/vecutil.py | Python | lgpl-3.0 | 11,468 | [
"Psi4"
] | e1b4fc95e4236dc3c6202d63ff8242167c7b323965c99a46fbb34dac61b91d6a |
#
# ColorHandPose3DNetwork - Network for estimating 3D Hand Pose from a single RGB Image
# Copyright (C) 2017 Christian Zimmermann
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either ... | dedoogong/asrada | HandPose_Detector/BinaryDbReader.py | Python | apache-2.0 | 22,576 | [
"Gaussian"
] | 58082ed0a31619217dac6eba097fcec6a8b6f8abfa38710b0e1bd4f4ca9c29d2 |
# Copyright Contributors to the Pyro project.
# SPDX-License-Identifier: Apache-2.0
"""
Example: Neural Transport
=========================
This example illustrates how to use a trained AutoBNAFNormal autoguide to transform a posterior to a
Gaussian-like one. The transform will be used to get better mixing rate for N... | pyro-ppl/numpyro | examples/neutra.py | Python | apache-2.0 | 6,722 | [
"Gaussian"
] | 9c99d80de19b086330a038f5bc28aebdf28436764dc44a11f0115c67e1346f13 |
""" Handler for CAs + CRLs bundles
"""
import tarfile
import os
import io
from DIRAC.Core.DISET.RequestHandler import RequestHandler
from DIRAC import gLogger, S_OK, S_ERROR, gConfig
from DIRAC.Core.Utilities.ThreadScheduler import gThreadScheduler
from DIRAC.Core.Utilities import File, List
from DIRAC.Core.Security i... | DIRACGrid/DIRAC | src/DIRAC/FrameworkSystem/Service/BundleDeliveryHandler.py | Python | gpl-3.0 | 6,375 | [
"DIRAC"
] | cf12afc6f3476faad0e612d1cca7609e7ab0852af9ed055b7be9b15e7c4e877f |
# (C) 2016, Markus Wildi, wildi.markus@bluewin.ch
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This program is distr... | jerryjiahaha/rts2 | scripts/u_point/transform/u_libnova.py | Python | lgpl-3.0 | 8,916 | [
"VisIt"
] | 40c700d3a07515f4dd8599098ef9ca1fdfc6268f1aa64399283a8862ee4e778c |
#!/usr/bin/python
"""
This script asks cdash to give it a summary of all of the failing tests
on the nightly expected section. It presents the tests ranked by the number
of failing machines. From this view you can more easily see what is in
the greatest need of fixing.
"""
import sys
import time
import datetime
import... | ashray/VTK-EVM | Utilities/Maintenance/vtk_fail_summary.py | Python | bsd-3-clause | 2,767 | [
"VTK"
] | 72241e64e00fefd13ceaba86fa07af8bffe6dea0045fceedad8572fd63b54688 |
#\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\#
'''Application handler for Bender applications in LHCb.'''
import os
import tempfile
import pprint
import shutil
from os.path import split, join
from GangaCore.GPIDev.Schema.Schema import FileItem, SimpleItem
import GangaCore.Utility.loggi... | ganga-devs/ganga | ganga/GangaLHCb/Lib/Applications/Bender.py | Python | gpl-3.0 | 8,804 | [
"DIRAC"
] | ff84bb75c41e534288f40972612d0197a636d3e0ebdd1f056e3e7b68d0de679e |
# Version: 0.15
"""
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/warner/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, and pypy
* [![Latest Version]
(https://pypip.in/version/versioneer/badge.svg?style=flat)
](ht... | chen0031/rekall | rekall-core/versioneer.py | Python | gpl-2.0 | 62,487 | [
"Brian"
] | 827f92a2c1571b1bb2d14ba5cbfc2c05497636f9ea0fc1102416cac35da913f0 |
from django.db import models
from .general_models import ScenarioSpecificBase
from django.forms.models import model_to_dict
class Feed(ScenarioSpecificBase):
me = models.FloatField()
fme = models.FloatField()
erdp = models.FloatField()
dup = models.FloatField()
adf = models.FloatField()
price ... | BenLatham/FLOSS-Agricultural-Simulation | simulation/models/diet_models.py | Python | mit | 2,117 | [
"ADF"
] | fe74b5218afbc69c7916a2488ef69d4373cf9242ad3c7e6c42bf8158014bcb4a |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Gary Burton
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | Forage/Gramps | gramps/plugins/tool/relcalc.py | Python | gpl-2.0 | 10,241 | [
"Brian"
] | 9e3d49ea7536dddc95c9a4de0479b03733cb204653a2c9fd4fb5a51f46862f66 |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/view/plugins/dateeditorplugin.py | Python | gpl-2.0 | 1,490 | [
"VisIt"
] | 9bd6d219f639060155aa743d14e18d5bf7574be6ddf406ddf331664999310cc1 |
"""
TESTS is a dict with all you tests.
Keys for this will be categories' names.
Each test is dict with
"input" -- input data for user function
"answer" -- your right answer
"explanation" -- not necessary key, it's using for additional info in animation.
"""
WORDS = {'act', 'age', 'air', 'arm', 'art', 'ask... | Bryukh-Checkio-Tasks/checkio-mission-crossword-solver | verification/tests.py | Python | mit | 18,045 | [
"VisIt"
] | 4872706271c7f24231de294db343e1a0526d4ee0d9eaf03fed3d1aab13f60c8d |
import director, random
from constants import *
OUTSIDE_CHANNEL = "left";
INSIDE_CHANNEL = "right";
switch_sound = director.load_sound("scenes/p2/audio/switch.ogg")
ghost_story_sound = director.load_sound("scenes/p2/audio/ghost_story.ogg")
def reset():
director.set_on(WELCOME_SIGN_RELAY)
director.set_on(CHAIR_SPOT... | smdvdsn/hauntedpi | scenes/p2/scene_chair.py | Python | mit | 2,794 | [
"BLAST"
] | 9e9f569fc5ca9799ffd55c7df8cee28f940822fa179bdad33e964bac20c9cd22 |
''' Tests for pyleoclim.core.ui.PSD
Naming rules:
1. class: Test{filename}{Class}{method} with appropriate camel case
2. function: test_{method}_t{test_id}
Notes on how to test:
0. Make sure [pytest](https://docs.pytest.org) has been installed: `pip install pytest`
1. execute `pytest {directory_path}` in terminal to ... | LinkedEarth/Pyleoclim_util | pyleoclim/tests/test_ui_PSD.py | Python | gpl-3.0 | 2,249 | [
"Gaussian"
] | 02eabcbb6dcd39cae290178659bd43558ca3f7b85e29b7b9c4a48028268f5a9a |
"""Additional dataset classes."""
from __future__ import (division, print_function, )
from collections import OrderedDict
from scipy.stats import multivariate_normal
import numpy as np
import numpy.random as npr
from fuel import config
from fuel.datasets import H5PYDataset, IndexableDataset
from fuel.transformers.def... | IshmaelBelghazi/ALI | ali/datasets.py | Python | mit | 5,781 | [
"Gaussian"
] | 1c2fa22ad5bbef6d190fc130092d6546faba74875dff9dedcc9ad37a2085b252 |
from django.db import models
from edc_constants.choices import HIV_RESULT
class Subject(models.Model):
subject_identifier = models.CharField(max_length=25, unique=True)
class Meta:
app_label = 'hiv_status'
class Visit(models.Model):
subject = models.ForeignKey(Subject)
visit_datetime = ... | botswana-harvard/hiv-status | hiv_status/models.py | Python | gpl-2.0 | 2,277 | [
"VisIt"
] | 27ee6de4d9ee4fcdd61489b91be878d8da2e23b8047b16ff58c5722c57260ca0 |
#!/usr/bin/python
"""Test of navigation to same page links."""
from macaroon.playback import *
import utils
sequence = MacroSequence()
sequence.append(utils.StartRecordingAction())
sequence.append(KeyComboAction("<Control>Home"))
sequence.append(utils.AssertPresentationAction(
"1. Top of file",
["BRAILLE LI... | pvagner/orca | test/keystrokes/firefox/line_nav_follow_same_page_link.py | Python | lgpl-2.1 | 1,993 | [
"ORCA"
] | b7aa3fea4ec2126b14496995a898e9d895be79b4904138ae02774b6aa72f0a0a |
# -*- coding: utf-8 -*-
#
# inhibitory_network.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Lice... | HBPNeurorobotics/nest-simulator | examples/nest/gap_junction/inhibitory_network.py | Python | gpl-2.0 | 4,472 | [
"NEURON"
] | 1428ff1e1e83755c4def5ba1aac0d456e17a11630bbc4ea60d1eec719d9cc1b2 |
"""
Copyright (c) 2016 Jet Propulsion Laboratory,
California Institute of Technology. All rights reserved
"""
import logging
import numpy as np
from nexustiles.nexustiles import NexusTileService
# from time import time
from webservice.NexusHandler import nexus_handler, SparkHandler, DEFAULT_PARAMETERS_SPEC
from webs... | dataplumber/nexus | analysis/webservice/algorithms_spark/TimeAvgMapSpark.py | Python | apache-2.0 | 12,355 | [
"NetCDF"
] | 8783f1aead194206aff4c6a38a38844bdfb96b51998d705cfb247b5763ebaf94 |
# Copyright 2010-2017, The University of Melbourne
# Copyright 2010-2017, Brian May
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | brianmay/karaage | karaage/people/urls/__init__.py | Python | gpl-3.0 | 2,144 | [
"Brian"
] | 486d61bc448fae492eae5b29b6e71376b6daad9b10ddca56b2b7232a0f532733 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import pycuda.driver as cuda
import pycuda.autoinit
import pycuda.gpuarray as gpuarray
from pycuda.compiler import SourceModule
from scipy.sparse import *
import numpy
import random
import sys
INPUT_VECTOR_SIZE = 2 # inputs of one neuron
SYNAPSES_VECTOR_SIZE = 2 # sy... | 4martin/snn-simulator-example | snn-simulator.py | Python | mit | 21,162 | [
"NEURON"
] | 14b0e72d1c89f029ffc93340c1212dc8c145f556244502ba4f7c11ed923710c7 |
# -*- coding: utf-8 -*-
from shop.models.cartmodel import Cart
from django.contrib.auth.models import AnonymousUser
def get_cart_from_database(request):
database_cart = Cart.objects.filter(user=request.user)
if database_cart:
database_cart = database_cart[0]
else:
database_cart = None
r... | thenewguy/django-shop | shop/util/cart.py | Python | bsd-3-clause | 3,146 | [
"VisIt"
] | 6e92981a91c9f83c0dcb28ae2c493fe62d00585d71bcb7f3b9c9429e334db4ea |
#!/usr/bin/env python
import os
import sys
import subprocess as sp
import argparse
if sys.version_info.major == 3:
PY3 = True
from urllib.request import urlretrieve
else:
PY3 = True
from urllib import urlretrieve
usage = """
The easy way to test recipes is by using `circleci build`. However this doe... | joachimwolff/bioconda-recipes | bootstrap.py | Python | mit | 4,242 | [
"Bioconda"
] | cce566f72f95064aa918ea4705f1a0a6a70adaa942773dfdc9ecc0280d58523b |
# Copyright (C) 2015 Alejandro Molina-Sanchez, Henrique Pereira Coutada Miranda
# All rights reserved.
#
# This file is part of yambopy
#
import xml.etree.ElementTree as ET
from qepy.auxiliary import *
from numpy import array, zeros
import re
RytoeV = 13.605698066
class ProjwfcXML():
"""
Class to read da... | henriquemiranda/yambopy | qepy/projwfcxml.py | Python | bsd-3-clause | 7,487 | [
"Quantum ESPRESSO"
] | 6eb482d2b94cca4fe5a530fe07a96185a85782877d640bc80285f1cde4f1a40f |
# Copyright 2001 by Katharine Lindner. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""
This module is deprecated; its functions are now available from Bio.InterPro.
This m... | dbmi-pitt/DIKB-Micropublication | scripts/mp-scripts/Bio/WWW/InterPro.py | Python | apache-2.0 | 651 | [
"Biopython"
] | 4c38e99b5e4ec2b8cf0510452d8c76a1b4b9e364bf5f771fbe530a80f1a312b7 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
from argparse import Namespace
import datetime, openpyxl as xl, os
import code
import operator, collections
import unicodecsv as csv
import re
# Django Imports
from django.core.management.base import BaseCommand, CommandError
from django.db import models
from django.utils imp... | I-TECH-UW/mwachx | utils/management/commands/reports.py | Python | apache-2.0 | 63,592 | [
"VisIt"
] | d7d85a4d6805fe8d4e4db8af2adb48b05f33f5d084d7b00f5879c06c1f9362c4 |
# -*- coding: utf-8 -*-
"""
Acceptance tests for Video.
"""
import os
from mock import patch
from nose.plugins.attrib import attr
from unittest import skipIf, skip
from selenium.webdriver.common.by import By
from selenium.webdriver.common.action_chains import ActionChains
from ..helpers import UniqueCourseTest, is_yo... | devs1991/test_edx_docmode | common/test/acceptance/tests/video/test_video_module.py | Python | agpl-3.0 | 50,731 | [
"VisIt"
] | 9bc56e48470ff3300ff48e2a0b26828f755ff43fac52d9878f952728bed4da4d |
##
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
#
# Copyright:: Copyright 2012-2015 Uni.Lu/LCSB, NTUA
# Authors:: Josh Berryman <the.real.josh.berryman@gmail.com>, Fotis Georgatos <fotis@cern.ch>, Kenneth Hoste
# License:: MIT/GPL
# $Id$
#
# This work implements a part of the HPCB... | ULHPC/modules | easybuild/easybuild-easyblocks/easybuild/easyblocks/e/espresso.py | Python | mit | 2,912 | [
"ESPResSo"
] | ef851ca6d331b4920b86a5822ceea216cd5509ecf984a7d6307a063ebd1d88bf |
#
# Copyright 2014, 2020-2021 Lars Pastewka (U. Freiburg)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General P... | libAtoms/matscipy | tests/test_full_to_Voigt.py | Python | lgpl-2.1 | 3,278 | [
"Matscipy"
] | 7bd95c442a9e6e7c996bdbf18dd5676abbb7809270cdafc00903bda8248db427 |
# Copyright 2001 Brad Chapman.
# Revisions copyright 2009-2010 by Peter Cock.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Definitions for interacting with BLAST related a... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/Blast/Applications.py | Python | gpl-2.0 | 56,839 | [
"BLAST",
"Biopython"
] | 3c94e4ef9b5752660f00d10e5c48fca5652a5839bb3699fbc6af641d13fec023 |
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2006-2014, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Public version 2.1 or later. ... | Clyde-fare/cclib | src/cclib/parser/gaussianparser.py | Python | lgpl-2.1 | 62,712 | [
"Gaussian",
"cclib"
] | d1151e501edad8ed2a60e117f03b11dcb4f8a2d3a2d73a98e7094c546bead158 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2011-2015 Slack
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
... | Slack06/yadg | descgen/visitor/base.py | Python | mit | 1,695 | [
"VisIt"
] | dd97e04896eb51a337244df177afbfdb09d97ba1d418aba3c3458948db934e0a |
#!/usr/bin/env python
#
# Copyright (c) 2013 Martin Abente Lahaye. - tch@sugarlabs.org
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your o... | tchx84/twitter-gobject | tests/test_twr_oauth.py | Python | lgpl-2.1 | 2,627 | [
"VisIt"
] | 2fc04d455cd71016cada41a1c963c1038f73b5417e2f6d1e12d7ddaf8b37cdef |
#!/usr/bin/env python
"""
Commands related to syncing copytext from Google Docs.
"""
import app_config
import logging
from fabric.api import task
from oauth import get_document, get_credentials, get_doc
logging.basicConfig(format=app_config.LOG_FORMAT)
logger = logging.getLogger(__name__)
logger.setLevel(app_config... | nprapps/debates | fabfile/text.py | Python | mit | 1,148 | [
"VisIt"
] | ba0ba4ebc8b1f81806ff1142131b985ead2401753de186a0e380a2a672b0d5ff |
# -*- coding: utf-8 -*-
"""
The :mod:`sklearn.naive_bayes` module implements Naive Bayes algorithms. These
are supervised learning methods based on applying Bayes' theorem with strong
(naive) feature independence assumptions.
"""
# Author: Vincent Michel <vincent.michel@inria.fr>
# Minor fixes by Fabian Pedre... | GbalsaC/bitnamiP | venv/lib/python2.7/site-packages/sklearn/naive_bayes.py | Python | agpl-3.0 | 14,400 | [
"Gaussian"
] | 52767f0638096530d82819ca1b3c8a3f5dc426fa336decc3ec9742dbedbffc8f |
import gc
import logging
import traceback
from collections import defaultdict
from datetime import datetime, timedelta
from multiprocessing import Process, Queue
import numpy as np
import pandas as pd
import xarray as xr
from typhon.geodesy import great_circle_distance
from typhon.geographical import GeoIndex
from ty... | atmtools/typhon | typhon/collocations/collocator.py | Python | mit | 60,801 | [
"DIRAC",
"Dalton"
] | 2335e4f07f2dc7420c411dc8853be877a06397c0f062d77385fbf4010f6f8025 |
#!/usr/bin/python3
#This program produces temperature vs density, and pressure vs temperature phase diagrams
#from data stored in *best.dat (or *best_tensor.dat) data files generated by figs/new-melting.cpp
#and found in deft/papers/fuzzy-fmt/data/phase-diagram (edit later - currently files in newdata/phase-diagram a... | droundy/deft | papers/fuzzy-fmt/plot-phasediagram.py | Python | gpl-2.0 | 15,275 | [
"CRYSTAL"
] | 5d046e8659fb2f0f707c39ea4bfc6dd01cdedf95645233897b2878682198f594 |
#!/usr/bin/env python
__author__ = 'Mike McCann,Duane Edgington,Reiko Michisaki'
__copyright__ = '2013'
__license__ = 'GPL v3'
__contact__ = 'duane at mbari.org'
__doc__ = '''
cron loader for CANON wave gliders slocum, OA and TEX in September 2013
Mike McCann; Modified by Duane Edgington and Reiko Michisaki... | duane-edgington/stoqs | stoqs/loaders/CANON/puck_loadsep2013.py | Python | gpl-3.0 | 2,446 | [
"NetCDF"
] | e74e8dacb0294ee32dbd964aba797a61bb4086ef4a76d493de434ee9d67d6898 |
##########################################################################
#
# Copyright (c) 2012, John Haddon. All rights reserved.
# Copyright (c) 2013, Image Engine Design Inc. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that ... | hradec/gaffer | python/GafferSceneTest/SceneTestCase.py | Python | bsd-3-clause | 14,718 | [
"VisIt"
] | 9e08638f210db588ae5e41baff10a6f5be2b84499aa7431f8f23be43060e951c |
#! compare MemJK and DiskJK
import psi4
import numpy as np
import random
psi4.set_output_file("output.dat", False)
mol = psi4.geometry("""
O
H 1 1.00
H 1 1.00 2 103.1
""")
psi4.set_num_threads(6)
memory = 50000
primary = psi4.core.BasisSet.build(mol, "ORBITAL", "cc-pVDZ")
aux = psi4.core.BasisSet.build(mol, "ORBITA... | amjames/psi4 | tests/python/memdfjk/input.py | Python | lgpl-3.0 | 1,603 | [
"Psi4"
] | 79e65da11b4b0ecfe94bdb479cf2e1480a445c3a725d155c8c13e7dbe5eb5d6a |
#!/usr/bin/env python
#=============================================================================#
# #
# NAME: do_RMsynth_1D.py #
# ... | crpurcell/RM-tools | RMtools_1D/do_RMsynth_1D.py | Python | mit | 21,366 | [
"Gaussian"
] | fe2cb15dd6caf83f4c66bb678766bee34d7ee450be32bbd2fde08bfd71cdd7b6 |
#
# AtHomePowerlineServer - networked server for various controllers
# Copyright © 2019 Dave Hocker
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the License.
#
# See the LICENS... | dhocker/athomepowerlineserver | drivers/device_driver_manager.py | Python | gpl-3.0 | 7,405 | [
"xTB"
] | 2e55cf28b9cff8f90e817e1afa67a9efaffc9b134ff301664066516cdfb08f05 |
# -*- coding: utf-8 -*-
# FAO Translators:
# First of all thank you for your interest in translating this game,
# I will be grateful if you could share it with the community -
# if possible please send it back to my email, and I'll add it to the next version.
# The translation does not have to be exact as long as it ... | imiolek-ireneusz/pysiogame | i18n/custom/fi.py | Python | gpl-3.0 | 12,144 | [
"Elk",
"Jaguar",
"MOOSE"
] | 33edd52863eeb1c7511ca5917b98f5a0b637d48fa484d9b9e3d8751f019d02ea |
import os
from time import sleep
from django.core.files import File
from lettuce import world, step, after
from mock import mock_open, patch
from questionnaire.features.pages.questionnaires import QuestionnairePage
from questionnaire.features.pages.uploads import UploadDocumentPage, DeleteDocumentPage
from questionnair... | eJRF/ejrf | questionnaire/features/upload_steps.py | Python | bsd-3-clause | 4,524 | [
"VisIt"
] | 50fd0865727b34dba779fea69a7319162c5f658fff3ab6dba6491f829448f5d7 |
#!/usr/bin/env python
"""
Script to update pilot version in CS
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import DIRAC
from DIRAC.Core.Utilities.DIRACScript import DIRACScript as Script
@Script()
def main():
Script.register... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/scripts/dirac_admin_update_pilot.py | Python | gpl-3.0 | 2,636 | [
"DIRAC"
] | bb489b95da890a596069d04fc31b750f49ab583f28a77773f7ff36f06d9a5146 |
# -*- coding:utf-8 -*-
# Copyright (c) 2015, Galaxy Authors. All Rights Reserved
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
#
# Author: wangtaize@baidu.com
# Date: 2015-03-30
import logging
from common import shell
from galaxy import sdk
LOG = logging.getLogger... | fxsjy/galaxy | console/backend/src/galaxy/wrapper.py | Python | bsd-3-clause | 3,231 | [
"Galaxy"
] | 696cbf9386eea94346fc55f662bd5441e288b87bc744496ad8d04d8deb414a6f |
# coding: utf-8
from __future__ import unicode_literals, division
import json
from monty.json import MontyEncoder, MontyDecoder
"""
Created on Dec 6, 2012
"""
import os
import shutil
from unittest import TestCase
import unittest
from pkg_resources import parse_version
import pymatgen
from custodian.qchem.handler... | alberthxf/custodian | custodian/qchem/tests/test_handlers.py | Python | mit | 35,404 | [
"pymatgen"
] | 31004221fec859387c4da13664e9bcdf16a4ce8094203cb9667bf34f6bdeb996 |
#!/usr/bin/python
#Audio Tools, a module and set of tools for manipulating audio data
#Copyright (C) 2007-2012 Brian Langenberger
#This program is free software; you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation; either version 2... | Excito/audiotools | src/huffman.py | Python | gpl-2.0 | 7,440 | [
"Brian"
] | 28e4dd289c986813a3a147fb2591abf93abcc56e1686aa3a28a67645ab2a9ecc |
# Author: Prabhu Ramachandran <prabhu_r at users dot sf dot net>
# Copyright (c) 2006, Enthought, Inc.
# License: BSD Style.
# Enthought library imports.
from traits.api import Instance
from tvtk.api import tvtk
# Local imports
from mayavi.filters.poly_data_normals import PolyDataNormals
from mayavi.core.pipeline_inf... | dmsurti/mayavi | mayavi/filters/warp_scalar.py | Python | bsd-3-clause | 1,273 | [
"Mayavi"
] | 05da72f2e57930b3b1601acf6485d58159e3d8751f1f612f2eb000f764e7f0cd |
"""Reads the RCV1-v2 dataset for Multi-label Classification
Important: Train and test sets are _switched_, since the original split leaves
the sides unbalanced.
Visit: http://www.ai.mit.edu/projects/jmlr/papers/volume5/lewis04a/lyrl2004_rcv1v2_README.htm""" # noqa
import os
import gzip
import collections
import anna... | jpbottaro/anna | anna/data/dataset/rcv1.py | Python | mit | 5,033 | [
"VisIt"
] | f47f2dbb2f70a69f13f8fcb3860e60b5eebdba85a18e7f51578ab08a37c15879 |
from __future__ import (absolute_import, division, print_function)
# pylint: disable=no-init,invalid-name,too-few-public-methods,unused-import
from mantid.kernel import *
from mantid.simpleapi import *
from mantid.api import *
from mantid.geometry import *
import os
class PoldiCompound(object):
"""Small helper ... | ScreamingUdder/mantid | Framework/PythonInterface/plugins/algorithms/PoldiCreatePeaksFromFile.py | Python | gpl-3.0 | 8,381 | [
"CRYSTAL"
] | c241b862f4ceef9515afd0ba8fa9259dd2ef3a0127185e94a8cbec455e7e0f4c |
#!/usr/bin/python
# -*- coding: utf-8 -*-
import sys
from collections import OrderedDict
from gkeys.action_map import Action_Map, Available_Actions
__version__ = '0.3'
__license__ = 'GPLv2'
if sys.version_info[0] >= 3:
py_input = input
_unicode = str
else:
py_input = raw_input
_unicode = unicode
... | gentoo/gentoo-keys | gkeys/gkeys/__init__.py | Python | gpl-2.0 | 1,017 | [
"Brian"
] | 9c30bd39a2593dc5d5d6706be2bbe56894b6bd1d53fc6c356abf5b50540baf5c |
#------------------------------------------------------------------------------
# Copyright (c) 2013, Nucleic Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#-------------------------------------------------... | viz4biz/PyDataNYC2015 | enaml/vtk_canvas.py | Python | apache-2.0 | 2,430 | [
"VTK"
] | c998fe959591398dc24a93ae7fca24331ffc852f94e4369c2072a2a42bd5cb82 |
#! /usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | googleapis/gapic-generator-python | tests/integration/goldens/redis/scripts/fixup_redis_v1_keywords.py | Python | apache-2.0 | 6,396 | [
"VisIt"
] | f811e72e1894296dd9b9e9c6ddf4d8d09eb24be8fc4e16fb4c41ac7cacfd91f2 |
#!/usr/bin/env python
##############################################################################
#
# Usage example for the procedure PPXF, which
# implements the Penalized Pixel-Fitting (pPXF) method by
# Cappellari M., & Emsellem E., 2004, PASP, 116, 138.
# The example also shows how to include a library of templa... | zpace/SparsePak-SFH | ppxf_kinematics_example_sdss.py | Python | mit | 8,349 | [
"Galaxy",
"Gaussian"
] | 7072d4b7b26f651920ec558004b811e257901a3098bc23ac32472bb8587b242e |
from chainkey.util import print_error
import httplib, urllib
import socket
import threading
import hashlib
import json
from urlparse import urlparse, parse_qs
try:
import PyQt4
except Exception:
sys.exit("Error: Could not import PyQt4 on Linux systems, you may try 'sudo apt-get install python-qt4'")
from PyQt... | Kefkius/encompass | plugins/labels.py | Python | gpl-3.0 | 9,203 | [
"VisIt"
] | 985cd2d9e9a9f39e1fcb880c680bdde15fbc912de9d02638eb411cb12c792916 |
"""
RKS via SGM (squared gradient minimization)
"""
import numpy as np
from frankenstein.sgscf import rks, sgrhf
""" Methods for output
"""
def update_sghf(mf):
pass
class SGRKS(rks.RKS):
# methods for output
print_info = sgrhf.print_info
# methods for SCF
update_sghf = update_sghf
get_g... | hongzhouye/frankenstein | sgscf/sgrks.py | Python | bsd-3-clause | 1,750 | [
"PyMOL"
] | 8b69430a6a8aeef66da1163b20f1c85e2883a9071a33719ac0eed887c529dbc3 |
import sys
file1=sys.argv[1]
file2=sys.argv[2]
file3=sys.argv[3]
def file_len_fasta(fname):
with open(fname) as f:
for i, l in enumerate(f):
pass
return (i + 1)/2
from Bio import SeqIO
from Bio.SeqIO.FastaIO import FastaWriter
records_r = SeqIO.parse(file2, "fasta")
records_f = SeqIO.p... | jooolia/phylo_temporal_jericho | sequence_processing/concatenate_R1_and_R2_for_translated_non_merging_primers.py | Python | mit | 5,052 | [
"Biopython"
] | 93989c77af869caa86a98fec5f865dacd443c44f1f034f5bb9448ab27e9f5079 |
from ..utils import type_from_ast, is_valid_literal_value
from ..error import GraphQLError
from ..type.definition import is_composite_type, is_input_type, is_leaf_type, GraphQLNonNull
from ..language import ast
from ..language.visitor import Visitor, visit
from ..language.printer import print_ast
class ValidationRule... | woodb/graphql-py | graphql/core/validation/rules.py | Python | mit | 21,570 | [
"VisIt"
] | 53bea2f2f3f052c3a8afa4c34fe6e8ad278d33059fc5f1297d13d5408d383edb |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import vtk
def main():
colors = vtk.vtkNamedColors()
points = vtk.vtkPoints()
points.InsertNextPoint(0, 0, 0)
vertex = vtk.vtkVertex()
vertex.GetPointIds().SetId(0, 0)
vertices = vtk.vtkCellArray()
vertices.InsertNextCell(vertex)
polyd... | lorensen/VTKExamples | src/Python/GeometricObjects/Vertex.py | Python | apache-2.0 | 1,179 | [
"VTK"
] | ec4ad03c7ee49bc060d8dae4d47f1fdff420c8c2aa6de5e7b9d020a310079d6d |
#!/usr/bin/env python
##############################################################################################
#
#
# regrid_emissions_N96e.py
#
#
# Requirements:
# Iris 1.10, time, cf_units, numpy
#
#
# This Python script has been written by N.L. Abraham as part of the UKCA Tutorials:
# http://www.ukca.ac.u... | acsis-project/emissions | emissions/python/timeseries_1960-2020/regrid_HCHO_emissions_n96e_greg.py | Python | gpl-3.0 | 19,014 | [
"NetCDF"
] | 81d6e534051cfcc1d019a3c0900e5391a37f9a81b35e5110d54cbf574e33a77c |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | EmreAtes/spack | var/spack/repos/builtin/packages/r-affycontam/package.py | Python | lgpl-2.1 | 1,838 | [
"Bioconductor"
] | b70dabd3f1a5202396ed9075d376caba73f48bd6c6adf288e7001659c349e631 |
#!/usr/bin/python
import numpy as np
import matplotlib.pyplot as plt
from scipy.optimize import curve_fit
# function to model and create data: Two-Gaussian
def func(x, a0, b0, c0, a1, b1, c1):
return a0 * np.exp(-(x - b0)**2 / (2 * c0**2)) \
+ a1 * np.exp(-(x - b1)**2 / (2 * c1**2))
# clean data
x = n... | casep/Molido | fitting-two-gaussians.py | Python | gpl-2.0 | 947 | [
"Gaussian"
] | 5035bba5b8014e3c977369c97fd6cfab5862332cf284ed4fcca5b24fac724663 |
from __future__ import annotations
import inspect
import json
import logging
import os
import pathlib
from xia2.Handlers.Streams import banner
logger = logging.getLogger("xia2.Schema.Interfaces.Scaler")
class Scaler:
"""An interface to present scaling functionality in a similar way to the
integrater interf... | xia2/xia2 | src/xia2/Schema/Interfaces/Scaler.py | Python | bsd-3-clause | 13,708 | [
"CRYSTAL"
] | 945f82418b4e804707d962adc206153c48a01d44ec159905c482194a6a559e78 |
#
# Handle the special case of the first scenario
#
self.notebook.switchScenario(0,scenarioType="Powder")
#
#
#
tab = self.notebook.mainTab
tab.settings['Program'] = 'castep'
tab.settings['Output file name'] = 'phonon.castep'
tab.settings['Excel file name'] = 'application_note_br_permittivity.xlsx'
tab.settings['Script... | JohnKendrick/PDielec | Examples/Castep/MgO/application_note_br_permittivity.py | Python | mit | 8,612 | [
"CASTEP"
] | eab1705bc45bed66699ae78b4c2190c9135f2ccb59a16743ae31b61f393331cf |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# sssadmin - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of ... | heromod/migrid | mig/cgi-bin/sssadmin.py | Python | gpl-2.0 | 1,142 | [
"Brian"
] | ca145dd893a6e4f0c9a3b15f9787e1954e36f116fe126d41fa43b7324cd8f49d |
# coding: utf-8
import io
import struct
from .. import common
from .. import vmd
def write(ios, motion):
"""
"""
assert(isinstance(ios, io.IOBase))
assert(isinstance(motion, vmd.Motion))
writer=common.BinaryWriter(ios)
# 30 bytes
writer.write_bytes(b"Vocaloid Motion Data 0002", 30)
# 2... | GRGSIBERIA/mmd-transporter | mmd-transporter/pymeshio/vmd/writer.py | Python | gpl-2.0 | 1,015 | [
"VMD"
] | 259d2fdb4fb57f30ee3419a54fb74de886ad724002537568d9e0490b3677a849 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | modules/tensor_mechanics/doc/tests/yf.py | Python | lgpl-2.1 | 4,579 | [
"MOOSE",
"VTK"
] | 831739af17ea65b5c5eaf99e07ec2f0d25cf6f6ef4372777327604267d04434a |
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | lgarren/spack | var/spack/repos/builtin/packages/r-summarizedexperiment/package.py | Python | lgpl-2.1 | 2,232 | [
"Bioconductor"
] | 669b9ca4534699b1d86bbd14bbec9c20b1efb81660180ea181410ef855ce2706 |
from PIL import Image, ImageFilter
import scipy
from scipy import ndimage
import numpy
from skimage import filter
import numpy as np
import matplotlib.pyplot as plt
from scipy import ndimage
import gdalnumeric
from skimage.io import imread
from skimage.segmentation import quickshift, slic, felzenszwalb
from skimage.fil... | geobricks/Playground | playground/clustering/image_processing_landsat_example/threshold_detection.py | Python | gpl-2.0 | 7,725 | [
"Gaussian"
] | 44274212033e157c3f23a9ee1af490a6e7b7b8ffc0b5f7a825e3bf3b02a8ae5a |
# -*- coding: utf-8 -*-
##############################################################################
#
# Copyright (C) 2012 - 2013 Daniel Reis
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as
# published by the Free S... | hugosdsantos/project-service | project_issue_task/__openerp__.py | Python | agpl-3.0 | 2,012 | [
"VisIt"
] | 490298e55440db8dad0c6b76c5291170dd5aded5c683e238e7e64def0630f8e7 |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | hmenke/espresso | testsuite/python/analyze_distribution.py | Python | gpl-3.0 | 6,990 | [
"ESPResSo"
] | aff717b1dc2da7738807ca9e1721f94ddf29e4e2d8065f4953a4f0b69f0e6514 |
#!/usr/bin/env python
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2021 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistri... | ashutoshvt/psi4 | psi4/share/psi4/fsapt/copy_pymol.py | Python | lgpl-3.0 | 1,338 | [
"Psi4",
"PyMOL"
] | 427a8e2665a29bdea65ef4bf6cfc3ba59289545c65ec5f6f1b14e6da274117be |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Created on Nov 10, 2012
@author: shyue
"""
from __future__ import division, unicode_literals
from pymatgen.util.testing import PymatgenTest
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2011, ... | matk86/pymatgen | pymatgen/core/tests/test_composition.py | Python | mit | 20,378 | [
"pymatgen"
] | 12695ce21e6663a81f05589e33c11d5a7c63f3e3cbbf2d230dfc9f5ef77ee86c |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | e-gob/plataforma-kioscos-autoatencion | scripts/ansible-play/.venv/lib/python2.7/site-packages/ansible/modules/network/avi/avi_stringgroup.py | Python | bsd-3-clause | 4,045 | [
"VisIt"
] | 0e1b0db9cd05bfccca73c6b2eae76f2f8a233df7dc048561f8b5119ac328cde3 |
#
# Copyright (C) 2009, Brian Tanner
#
#http://rl-glue-ext.googlecode.com/
#
# Licensed under the Apache License, Version 2.0 (the "License")
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | mguzdial3/MineCode | python-codec/examples/mines-sarsa-example/sample_mines_environment.py | Python | apache-2.0 | 7,414 | [
"Brian"
] | 78be8f7c6935577125118e3a51d7873b626f227e90b19802b1436b2168115b41 |
# -*- coding: utf-8 -*-
import sys
from math import pi, log
import numpy as np
from numpy.linalg import eigh
from scipy.special import gamma
from scipy.linalg import solve_banded
import ase.units as units
from ase.utils import devnull, prnt
from ase.data import atomic_numbers, atomic_names, chemical_symbols
from gpa... | robwarm/gpaw-symm | gpaw/atom/aeatom.py | Python | gpl-3.0 | 26,539 | [
"ASE",
"DIRAC",
"GPAW",
"Gaussian"
] | a1a25c1ab4839aef558a099f07516fc4d8d9907124c3791e6874f7b6cb5164ba |
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