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# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/tensorflow | tensorflow/python/autograph/core/unsupported_features_checker.py | Python | apache-2.0 | 2,070 | [
"VisIt"
] | 531ed4dacc484b1439f8a66fa323abd6d78815679176a5ab316b51f051a9302f |
# Copyright 2016 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | petewarden/tensorflow_makefile | tensorflow/contrib/distributions/__init__.py | Python | apache-2.0 | 2,389 | [
"Gaussian"
] | 3adc56aaa3b36e297b112a3a9a93e2424d9b05313a9d68ce5c6e22ac67b6a813 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements a Composition class to represent compositions,
and a ChemicalPotential class to represent potentials.
"""
import collections
import numbers
import os
import re
import string
from fun... | davidwaroquiers/pymatgen | pymatgen/core/composition.py | Python | mit | 49,735 | [
"pymatgen"
] | 5872998e537fa2b96ff6a7592ed19970ee1b986a09c8046eb0af67722e06a8cc |
# Lint as: python2, python3
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
... | karllessard/tensorflow | tensorflow/tools/compatibility/update/generate_v2_renames_map.py | Python | apache-2.0 | 7,410 | [
"VisIt"
] | 0579eb53e37f50995f5b6182e9924a7987f3bf68ce5ada20c933d4c383e8737a |
#! /usr/bin/env python
"""Unit tests for landlab.io.netcdf module."""
import numpy as np
import pytest
import xarray as xr
from numpy.testing import assert_array_equal
from landlab import HexModelGrid, RasterModelGrid
from landlab.io.netcdf import from_netcdf, to_netcdf
def test_netcdf_write_int64(tmpdir, format):
... | amandersillinois/landlab | tests/io/netcdf/test_to_netcdf.py | Python | mit | 5,322 | [
"NetCDF"
] | a59a78e2a675c1a7bea5c50f54e9844bb70f11858f340f290f2db44ffed7854f |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS that utilize the
progress page.
"""
from contextlib import contextmanager
import ddt
from six.moves import range
from ...fixtures.course import CourseFixture, XBlockFixtureDesc
from ...pages.common.logout import LogoutPage
from ...pages.lms.courseware import ... | appsembler/edx-platform | common/test/acceptance/tests/lms/test_progress_page.py | Python | agpl-3.0 | 16,675 | [
"VisIt"
] | a83a3b22870b84c4748f47a47a2f2eecafa78b5204f1d41d9c4d84004a84b35a |
from __future__ import unicode_literals, absolute_import
import logging
from functools import lru_cache
from catpy.exceptions import NoMatchingNamesException, MultipleMatchingNamesException
from .base import CatmaidClientApplication
logger = logging.getLogger(__name__)
def is_name():
pass
def is_id():
pa... | catmaid/catpy | catpy/applications/nameresolver.py | Python | mit | 6,615 | [
"NEURON"
] | 6c805f019e43e8c71dfa7deec3eacc1f86fead2778517f11b28319057053f15c |
import os
import fnmatch
import shutil
from collections import defaultdict
import glob
import codecs
class GlobDirectoryWalker:
# a forward iterator that traverses a directory tree
def __init__(self, directory, pattern="*"):
self.stack = [directory]
self.pattern = pattern
self.files =... | brian-team/brian2cuda | brian2cuda/sphinxext/generate_examples.py | Python | gpl-2.0 | 7,704 | [
"Brian"
] | c4b8f7ff5ea2b100878d885f4fa70b7041f74a86b15efd165fdf5e9ee4decefd |
#!/usr/bin/env python
# −*− coding: UTF−8 −*−
class Node(object):
def __init__(self):
self.children = []
def add(self, node):
self.children.append(node)
def do(self):
print 'Node'
def accept(self, visitor):
visitor.visit(self)
class NodeA(Node):
def do(self):
... | pgularski/snippets | python/design_patterns/visitor.py | Python | mit | 772 | [
"VisIt"
] | 1967a0f0695dfdea0da233b691a75f0e7871bb1156c23453d8b9fdc154b461c9 |
#
# Copyright 2014-2015, 2017, 2021 Lars Pastewka (U. Freiburg)
# 2018-2020 Jan Griesser (U. Freiburg)
# 2015 Adrien Gola (KIT)
# 2014 James Kermode (Warwick U.)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free... | libAtoms/matscipy | matscipy/calculators/polydisperse/__init__.py | Python | lgpl-2.1 | 998 | [
"Matscipy"
] | bda39ec69081ebd77174121d55c2c21f4ac14ef6dec88c5985208ec949658608 |
"""
@package linearFilters
Linear filters for images
"""
# Рекурсивный фильтр скользящего среднего https://habrahabr.ru/post/325590/
import threading
import multiprocessing
import math
import numpy
from PIL import Image
from PyQt5.QtCore import QCoreApplication
from . import apertureService
def meanFilter(c... | drewdru/AOI | imageFilters/filters.py | Python | gpl-3.0 | 13,345 | [
"Gaussian"
] | f0a8dca379b7d9738053daa14b8715a565f4f8e7c4bc5a8492372df4dfd845c9 |
# -*- coding: utf-8 -*-
#
# test_parrot_neuron.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Lice... | Silmathoron/nest-simulator | pynest/nest/tests/test_parrot_neuron.py | Python | gpl-2.0 | 10,008 | [
"NEURON"
] | a265f085e6deaf6bea37435636269d36597440f73aa821011c6254969809a28a |
__author__ = 'sibirrer'
import astrofunc.LensingProfiles.calc_util as calc_util
import pytest
class TestCalcUtil(object):
"""
tests the Gaussian methods
"""
def setup(self):
pass
def test_d_r_dx(self):
x = 1
y = 0
out = calc_util.d_r_dx(x, y)
assert out =... | sibirrer/astrofunc | test/test_calc_util.py | Python | mit | 1,421 | [
"Gaussian"
] | 7b71d43fa66df0e258c23c773d3cf927e985bb1b3097ec96a013e94873c82789 |
# Copyright (c) 2012 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | luzheqi1987/nova-annotation | nova/tests/unit/compute/test_resource_tracker.py | Python | apache-2.0 | 61,351 | [
"exciting"
] | 1f46fbfafd9bebfbdc5a6d6fbffe8330f902fd8dec31e115779784e22a27e4c9 |
# -*- coding: utf-8 -*-
# Copyright 2007-2020 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | dnjohnstone/hyperspy | hyperspy/_signals/signal2d.py | Python | gpl-3.0 | 35,008 | [
"Gaussian"
] | 70bc88012c88d356efbcbd588eb98376cabf40741ffcaa0bfbfc8ff8aa7b7fe7 |
#!/usr/bin/env python
from netCDF4 import Dataset
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.collections import LineCollection
from matplotlib.colors import colorConverter
from ase.units import Bohr
import os.path
from pyDFTutils.ase_utils.kpoints import cubic_kpath
from collections import name... | mailhexu/pyDFTutils | pyDFTutils/phonon/plotphon.py | Python | lgpl-3.0 | 14,805 | [
"ASE"
] | 4681c823b59f07f64dd4013da5b574a2f6fe7b7e0a5b6c0646454d6c3bbea1ed |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
"""
The Brew Shop
10 Pound Stout
Used by permission of The Brew Shop. All rights reserved.
You can purchase this kit at their store:
- http://thebrewshopbend.com/
Original Stats:
OG:
FG:
ADF:
IBU:
Color:
Alcohol:
Boil: 60 min
Pre-Boil Volume:
Pre-Boil Gravity:
"... | chrisgilmerproj/brewday | examples/the_brew_shop/10_pound_stout.py | Python | mit | 1,738 | [
"ADF",
"Amber",
"COLUMBUS",
"CRYSTAL"
] | 4d6b6ba54b66ef20e96acf6f69fa5bd50ddb29890af3a7bc054e136603edab30 |
from __future__ import print_function
from .lib import TestBase, FileCreator
from smmap.mman import (
SlidingWindowMapManager,
StaticWindowMapManager
)
from smmap.buf import SlidingWindowMapBuffer
from random import randint
from time import time
import sys
import os
man_optimal = SlidingWindowMapManager()
... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/smmap/test/test_buf.py | Python | gpl-3.0 | 5,478 | [
"BLAST"
] | 771b35f2044455facc218ab8bece8b3a5681df29fc16fcc05c84789c5d24a910 |
# this makes a running surf noise plot
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.animation as animation
from scipy import ndimage
import signal
import sys
def signal_handler(sig, frame):
print('User Interrupt detected.')
sys.exit(0)
# Update the matplotlib configuration para... | rxa254/MoodCube | Plotting/rednoise.py | Python | bsd-3-clause | 1,861 | [
"Gaussian"
] | 775924eb5b62f68a1fec2db61740cf99cec9d06ecfffb68af8a8c284cd7f661b |
from pylab import *
from pprint import pprint
import json
from IPython.display import HTML, display
import traitlets
from ipywidgets import *
from .show_code import show_code
from ..manifolds.torus import Torus
from ..manifolds.landmarks import Landmarks
from ..manifolds.curves import Curve, Curves
from ..models.fr... | jeanfeydy/lddmm-ot | LDDMM_Python/lddmm_python/modules/io/interactive_riemannian_geometry.py | Python | mit | 30,519 | [
"Gaussian",
"VTK"
] | 17668229a1ecdc80725fa54855215002b505793616240bc0d70095939a28c218 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | tqchen/tvm | python/tvm/contrib/target/coreml.py | Python | apache-2.0 | 8,292 | [
"VisIt"
] | e6256c59028710a6ecc6b715c4db9dac2099b94a45964e50214cf1cbd987af36 |
# ----------------------------------------------------------------------------
# Copyright (c) 2015--, micronota development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------------------------------... | tkosciol/micronota | micronota/bfillings/tests/test_diamond.py | Python | bsd-3-clause | 2,809 | [
"BLAST"
] | 2719ce4d50a559a151bbe782b4e688e95480084d9b7cc0d013b91de4be84b0fa |
from datetime import datetime
from turbogears.database import PackageHub
from sqlobject import *
from turbogears import identity
#added for iskonline
from mx.DateTime import now
import string
hub = PackageHub('infoshopkeeperonline')
__connection__ = hub
# class YourDataClass(SQLObject):
# pass
# identity model... | johm/infoshopkeeper | infoshopkeeperonline/infoshopkeeperonline/model.py | Python | gpl-2.0 | 3,893 | [
"VisIt"
] | 770d5e91f060cc9414eea13a5f85fbcc0f4f8c06ff1c90f88e0f168c3527d297 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
urlpatterns = [
url(r'^$', TemplateView.as_view(templ... | vainotuisk/icecreamratings | config/urls.py | Python | bsd-3-clause | 1,245 | [
"VisIt"
] | 56a97709fb53d3d5327149139f1e7e54766109291345da094d793d7b81a253ad |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides classes to handle the calculation of the IR spectra
This implementation is adapted from Abipy
https://github.com/abinit/abipy
where it was originally done by Guido Petretto and Matteo Gi... | gmatteo/pymatgen | pymatgen/phonon/ir_spectra.py | Python | mit | 8,319 | [
"ABINIT",
"pymatgen"
] | 824b70589484dc9951f294ed7fbbd91be5aacf1ebeb8cb808e768f8a70feb80a |
#!/bin/env python
"""
List the number of requests in the caches of all the ReqProxyies
Usage:
dirac-rms-list-req-cache [options]
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import DIRAC
from DIRAC.Core.Base import Script
from D... | yujikato/DIRAC | src/DIRAC/RequestManagementSystem/scripts/dirac_rms_list_req_cache.py | Python | gpl-3.0 | 1,293 | [
"DIRAC"
] | 1cc04b9fd449769fb2cd98d537003ab87b8aed24ff71f6ba996807d44a704bef |
"""
Copyright Government of Canada 2015-2020
Written by: National Microbiology Laboratory, Public Health Agency of Canada
Licensed under the Apache License, Version 2.0 (the "License"); you may not use
this work except in compliance with the License. You may obtain a copy of the
License at:
http://www.apache.org/lic... | phac-nml/irida-galaxy-importer | irida_import/main.py | Python | apache-2.0 | 3,543 | [
"Galaxy"
] | 7d2a96e7dd42bb6628ff05d5d873896bd137ed8f95a1fed4223a70baf558dfe9 |
"""Implementation of the WebSocket protocol.
`WebSockets <http://dev.w3.org/html5/websockets/>`_ allow for bidirectional
communication between the browser and server.
WebSockets are supported in the current versions of all major browsers,
although older versions that do not support WebSockets are still in use
(refer ... | obsh/tornado | tornado/websocket.py | Python | apache-2.0 | 41,216 | [
"VisIt"
] | 2ac985e8412bcf06d1cf6f846faf8b43b3a4ac3bafe3fcf5f0973834d0e819fe |
######!/usr/bin/python3
###### # -*- coding: utf-8 -*-
import smbus as smbus
import subprocess
import time
import sys
import quick2wire.i2c as i2clib
from quick2wire.i2c import I2CMaster, writing_bytes, reading
cof = 32768 #crystal constant
class tea5767:
def __init__(self):
self.i2c = smbus.SMBus(1)
se... | LinuxCircle/tea5767 | radio-smbus-tea5767-class.py | Python | mit | 4,972 | [
"CRYSTAL"
] | 379ee51486e8d61374701911f7229322c3e27928a300eca98e80ab6952282cb3 |
# -*- coding: utf-8 -*-
''' Used for processing FPCA requests'''
#
# Copyright © 2008 Ricky Zhou
# Copyright © 2008-2014 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use, modify,
# copy, or redistribute it subject to the terms and conditions of the GNU
# General Public License v.2... | cydrobolt/fas | fas/fpca.py | Python | gpl-2.0 | 17,099 | [
"VisIt"
] | 5ec7b6661fe0ce7703dd772114fb58e6c0e86f9ec3a3e65f45b5e1e5570f46df |
# -*- coding: utf-8 -*-
import asyncio
import discord
import random
import math
from discord.ext import commands
from libraries.library import *
from libraries import casino
emotes = [
u"\u0030\N{COMBINING ENCLOSING KEYCAP}", #0
u"\u0031\N{COMBINING ENCLOSING KEYCAP}", #1
... | Sakiut/FalltoSkyBot | cogs/jeux.py | Python | agpl-3.0 | 7,246 | [
"CASINO"
] | a075da63ea379126d6173d85d3c1ba318e7ce348628cd7d258753812f18d61ec |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/pbc/scf/test/test_rsjk.py | Python | apache-2.0 | 6,424 | [
"PySCF"
] | 89a729baedeb6bc28babe5566c374f3170efdeedf4665fa98d18b02b9277f4a6 |
# Copyright: (c) 2013, James Cammarata <jcammarata@ansible.com>
# Copyright: (c) 2018, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import os.path
import re
import sh... | tonk/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 71,937 | [
"Galaxy"
] | 4a09c685b8df10d25399185750dc6409ddbb7a603852409500337ef801d0e7d0 |
# -*- coding: utf-8 -*-
"""
Created on Sun Oct 8 18:02:30 2017
@author: Melikşah
"""
import numpy as np
import cv2
from matplotlib import pyplot as plt
### Activate following two lines to auto-set working directory as directory the script exists
#import os
#os.chdir(os.path.dirname(os.path.realpath... | mlkshclk/ComputerVision | canny.py | Python | mit | 4,414 | [
"Gaussian"
] | 6cdc6df303431ed9458f4df6f8f58c0c3b9ee84d2de9f3633f14a3a40d0d88d5 |
#!/usr/bin/env python
import sys
import os
import logging
from optparse import OptionParser
import glob
import shutil
from utils.GenomeLoader import GenomeLoader
from utils import utils_logging
import pysam
import command_runner
def read_white_list(white_list_file):
all_consensus = []
with open(white_list_fi... | tcezard/RADmapper | bin/RAD_bam_to_fastq.py | Python | mit | 16,032 | [
"pysam"
] | 871c23136490c249bdddd1bc5e9213d9369d2c0297c7ed56f13404d3cb545db8 |
##
# Copyright 2009-2016 Ghent University
#
# This file is part of EasyBuild,
# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
# with support of Ghent University (http://ugent.be/hpc),
# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
# Flemish Research Foundation ... | wpoely86/easybuild-easyblocks | easybuild/easyblocks/t/tinker.py | Python | gpl-2.0 | 6,440 | [
"TINKER"
] | 8887ef3d7a413c7559eda1ce166e2e86f484ffdcc8f6227ac7ccb7e2ba1e930f |
from math import sin, cos, pi, sqrt
import numpy as np
from ase.atoms import Atoms, Atom
from ase.units import Bohr, Ry
def read_scf(filename):
try:
f = open(filename + '.scf', 'r')
pip = f.readlines()
ene = []
for line in pip:
if line[0:4] == ':ENE':
e... | grhawk/ASE | tools/ase/io/wien2k.py | Python | gpl-2.0 | 5,868 | [
"ASE"
] | aea6bc3666b391475e2354c7baea307a716f87d08260045559ec9e2fba070ded |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the courseware unit bookmarks.
"""
import json
from nose.plugins.attrib import attr
import requests
from common.test.acceptance.pages.studio.auto_auth import AutoAuthPage as StudioAutoAuthPage
from common.test.acceptance.pages.lms.auto_auth import AutoAuthPage as LmsAuto... | louyihua/edx-platform | common/test/acceptance/tests/lms/test_bookmarks.py | Python | agpl-3.0 | 23,938 | [
"VisIt"
] | cc4420ce59a5e57573ce5448fa6e90cd2842c25fdc840f498ec087e84e472655 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/plugins/songs/forms/mediafilesdialog.py | Python | gpl-2.0 | 3,943 | [
"Brian"
] | 45d618050b9897a47396cfe70f9425ead28d7d11c4de4e6fec94da72a1c02a47 |
import matplotlib.pyplot as plt
#%matplotlib inline
import nengo
import numpy as np
import scipy.ndimage
import matplotlib.animation as animation
from matplotlib import pylab
from PIL import Image
import nengo.spa as spa
import cPickle
from nengo_extras.data import load_mnist
from nengo_extras.vision import Gabor, Mas... | science-of-imagination/nengo-buffer | Project/mental_rotation_training_counterclockwise_noise.py | Python | gpl-3.0 | 6,424 | [
"NEURON"
] | e8bd08299a9a00dc9fa014f9dcb8575c5757dc40980294874cd2208e67153054 |
import json;
import os;
import numpy as np;
def CreateDataBundle(config):
# dataPath = config["dataPath"]; #'/Users/zhaot/Work/neutube/neurolabi/data';
swcPath = config['swcDir']; #sessionPath + '/' + config['swcDir'];
swcFileList = list();
if config.has_key("minBodySize") | config.has_key("maxBod... | stephenplaza/NeuTu | neurolabi/python/flyem/CreateDataBundle.py | Python | bsd-3-clause | 4,703 | [
"NEURON"
] | 241d682eb52a8b746fc035a84a859c4b3b046dd7728d04bc14ba2de0aa44c7b0 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | ueshin/apache-spark | python/pyspark/ml/tests/test_persistence.py | Python | apache-2.0 | 20,116 | [
"Gaussian"
] | 0afe2567466c9c9aecc45db839ddebd9f1d263ea4b7a3a68f29c83d2f33a8aec |
__author__ = 'Zhouhao Zeng'
import HTSeq
import sys
from optparse import OptionParser
import numpy
def getSummitProfile(ga, summit_pos_set, window_size, resolution, UpstreamExtension, DownstreamExtension):
upstream_num_points = UpstreamExtension / resolution
downstream_num_points = DownstreamExtension / reso... | zhouhaozeng/bioinformatics-codebase | profile/generate_pileup_profile_around_summits.py | Python | gpl-3.0 | 4,364 | [
"HTSeq"
] | 563ce2ccb3c86385cf8f05b0f00edc1e3d682fbe8b1e0f3e0b476db4893b9d65 |
from math import sin, cos, pi, sqrt
import numpy as np
from ase.atoms import Atoms, Atom
from ase.parallel import paropen
"""Module to read and write atoms in cif file format"""
def read_cif(fileobj, index=-1):
if isinstance(fileobj, str):
fileobj = open(fileobj)
def search_key(fobj, key):
... | freephys/python_ase | ase/io/cif.py | Python | gpl-3.0 | 1,693 | [
"ASE"
] | 4fb12c81b095078577b216b77da3f17201998859f4bf19b9f6ca9a508e68a335 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | kkreis/espressopp | src/integrator/Settle.py | Python | gpl-3.0 | 2,518 | [
"ESPResSo"
] | 90cd4bf985e1eaf062d6b4caf66c086846614e81532752f0cb199a701f2c7cdf |
from __future__ import with_statement
import numpy as np
import getpass
import time
def _fread3(fobj):
"""Read a 3-byte int from an open binary file object
Parameters
----------
fobj : file
File descriptor
Returns
-------
n : int
A 3 byte int
"""
b1, b2, b3 = np.... | ME-ICA/me-ica | meica.libs/nibabel/freesurfer/io.py | Python | lgpl-2.1 | 7,638 | [
"Mayavi"
] | 0fa09810f96d5de36ce8dfd042562c8c075e318e36cc12081bff2a17caac6bfa |
# from .name.other.album import AlbumGenerator
# from .name.other.band import BandGenerator
# from ._unknown.motivation import MotivationGenerator
# from ._unknown.world import WorldGenerator
# from ._unknown.space.galaxy import GalaxyGenerator
# from ._unknown.space.star import StarGenerator
# from ._unknown.space.pla... | d2emon/generator-pack | src/genesys/generator/fng/__init__.py | Python | gpl-3.0 | 1,240 | [
"Galaxy"
] | 8975bdc662ce9bf926b4feaa68f261f7331c0b67465a78379bc5c1ee1c8433e6 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2018 Piero Dalle Pezze
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the ... | pdp10/sbpipe | sbpipe/snakemake/preproc.py | Python | mit | 2,731 | [
"COPASI"
] | 6da3f2b02fc9d0e9cc1630715578c893b500015c5c16ca512eb4be0c82e85657 |
'''
Set up Visual Sudio 2010 to build a specified MPIR configuration
Copyright (C) 2011, Brian Gladman
32-bit:
x86w: x86, i386, i486, i586, pentium, pentiummmx, k6, k62, k63, k7, athlon, viac3, viac32, x86_64
p6: pentiumpro, i686
mmx: pentium2
sse2: pentium4, prescott, core, netburst, netburstlahf
p3mmx: penti... | libtetcoin/mpir | build.vc12/mpir_config.py | Python | gpl-3.0 | 28,839 | [
"Brian"
] | f0912108b20b9b91d6f3d0ec7cceff5878645188546fff6480000e3f65d9e2b5 |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | var/spack/repos/builtin/packages/r-organismdbi/package.py | Python | lgpl-2.1 | 2,355 | [
"Bioconductor"
] | a8e4032ac27605f700ceb77dfcd8842749aa115263789018d2cc1cdf7d503427 |
#!/usr/bin/python -tt
# Pulls out sequences with organismal name (based on CAMERA Microbial Eukaryotic Transcriptome)
# Any inputs with - or -- are optional and will default to certain values.
# Written by: Christopher R. Main, University of Delaware
# Last Updated: 09/19/2013
# Versions:
# 0.1 - Open fasta file corre... | calandryll/transcriptome | scripts/old/fasta_pull.py | Python | gpl-2.0 | 2,159 | [
"BLAST"
] | c835a77fdf2d717d476b599e7bf7e72cdbc170715f41a2eb659c34fbcfb6690d |
##
## Biskit, a toolkit for the manipulation of macromolecular structures
## Copyright (C) 2004-2012 Raik Gruenberg & Johan Leckner
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either v... | ostrokach/biskit | Biskit/settings.py | Python | gpl-3.0 | 3,438 | [
"BLAST",
"PyMOL"
] | 68c7684ccfffd11dde257812670eb0c8e52316c78cd551a7766cde1d20948933 |
#!/usr/bin/env python
#
# This file is part of Buildbot. Buildbot is free software: you can
# redistribute it and/or modify it under the terms of the GNU General Public
# License as published by the Free Software Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# A... | protatremy/buildbot | worker/setup.py | Python | gpl-2.0 | 5,545 | [
"Brian"
] | 1ddac18b3c0f203fef8b83fe7ce1d5d7af64ab061ab61bff399febc72dc951ce |
import lb_loader
import pandas as pd
import simtk.openmm.app as app
import numpy as np
import simtk.openmm as mm
from simtk import unit as u
from openmmtools import hmc_integrators, testsystems, integrators
precision = "mixed"
testsystem = testsystems.DHFRExplicit(nonbondedCutoff=1.1*u.nanometers, nonbondedMethod=app... | kyleabeauchamp/HMCNotes | code/misc/testing_force_group_speed.py | Python | gpl-2.0 | 1,760 | [
"OpenMM"
] | d72a46a4713b2da8522bb2ebfcdd32527e51083e0b95913caedbe4ab71c222dd |
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | dermute/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 29,958 | [
"Galaxy"
] | 20f606cee43a988afd5cecb76dc22eae7dcdda6feb5252c7926a314dd9fc3c8a |
import warnings
warnings.simplefilter('always', DeprecationWarning)
import os
import functools
import os.path
import re
import urllib
import urllib2
import imp
import tabulate
from connection import H2OConnection
from job import H2OJob
from expr import ExprNode
from frame import H2OFrame, _py_tmp_key
from model import ... | junwucs/h2o-3 | h2o-py/h2o/h2o.py | Python | apache-2.0 | 74,681 | [
"Gaussian"
] | be5ccc98f5e16561ea8b576d978f36dff8ee161eb40fca8227676c40a1d7475d |
"""Test the Amber Electric Sensors."""
from collections.abc import AsyncGenerator
from unittest.mock import Mock, patch
from amberelectric.model.current_interval import CurrentInterval
from amberelectric.model.range import Range
import pytest
from homeassistant.components.amberelectric.const import (
CONF_API_TOK... | rohitranjan1991/home-assistant | tests/components/amberelectric/test_sensor.py | Python | mit | 10,601 | [
"Amber"
] | 3ad7859e7756de37c9b9f08ca2ab7345969ca1e33d2a33be25e01890f3443458 |
# Beware! Only tested for non-spin-polarized case
import re
import sys
import rlcompleter
import readline
#from numpy import *
from enterfi import enterfi
from outputfi import outputfi
gridfname = enterfi("Enter VASP field data (CHGCAR, LOCPOT, etc.)")
outfname = outputfi("Enter output file name ")
gridfi = open(grid... | skasamatsu/vaspgrid | zav.py | Python | mit | 2,327 | [
"VASP"
] | 870f7cb41a3d1cb4ae7a03782f4e79c0a512d5f8359c97bb721c69584428613a |
#!/usr/bin/env python
# This code extracts the necessary information from current VASP output folders (self, dielectric, phonon, nself_aMoBT etc)
# and run aMoBT to calculate the electronic properties: mobility, conductivity and thermopower at different temperatures
# Please contact alireza@wustl.edu if you had any que... | albalu/dekode | collect_defect_energy.py | Python | mit | 8,131 | [
"VASP",
"pymatgen"
] | 1372f356bb4cf7a9eba1c021ed9e534f5d8e87b7b8f4ff4d58d727418d7bb409 |
"""Some utility functions for the spectra."""
import numpy as np
from scipy.ndimage.filters import gaussian_filter1d
def res_corr(flux, dvbin, fwhm=8):
"""
Real spectrographs have finite spectral resolution.
Correct for this by smoothing the spectrum (the flux) by convolving with a Gaussian.
... | sbird/fake_spectra | fake_spectra/spec_utils.py | Python | mit | 1,904 | [
"Gaussian"
] | cf33876f8bade8996afc62178d184bf26e0dbf73acd14d7ddf43346cd589a7cb |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
=========================================================================
Program: Visualization Toolkit
Module: TestNamedColorsIntegration.py
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or ... | hlzz/dotfiles | graphics/VTK-7.0.0/Rendering/Volume/Testing/Python/TestFixedPointRayCasterLinear.py | Python | bsd-3-clause | 1,890 | [
"VTK"
] | ba6205eec0f2d5f7a7690af89635aac8c72aff2cb5ad3f19557b94bde88890bb |
from __future__ import absolute_import
from __future__ import print_function
import matplotlib.pyplot as plt
import autograd.numpy as np
import autograd.scipy.stats.norm as norm
from autograd.misc.optimizers import adam, sgd
# same BBSVI function!
from black_box_svi import black_box_variational_inference
if __name_... | hips/autograd | examples/natural_gradient_black_box_svi.py | Python | mit | 4,775 | [
"Gaussian"
] | 799b054bb1bdf24573d47b9afe3b22bf5d53908bfbe8935d2392d763147ea628 |
from setuptools import setup, find_packages
setup(
name = 'oacwellcome',
version = '1.0.0',
packages = find_packages(),
install_requires = [
"octopus==1.0.0",
"esprit",
"Flask==0.9",
"WTForms==2.0.1",
"flask_mail==0.9.1",
"newrelic",
"gunicorn==19... | CottageLabs/oacwellcome | setup.py | Python | apache-2.0 | 843 | [
"Octopus"
] | 7b729dd53a542ba6a66cdd16e6d90cc5c58049de8cbfa3321ff0163576b45926 |
"""
Copyright (c) 2004-Present Pivotal Software, Inc.
This program and the accompanying materials are made available under
the terms of the under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.... | edespino/gpdb | src/test/tinc/tinctest/models/perf/__init__.py | Python | apache-2.0 | 8,328 | [
"VisIt"
] | b92690b28503e47dd02dfd079af5e0bfef88b4dc8d38cce73e15a305c308efcb |
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
urlpatterns = [
url(r'^$', TemplateView.as_view(template_name='page... | malaclypse2/seraphim | config/urls.py | Python | mit | 1,788 | [
"VisIt"
] | ff21b5fdafbfa87ea081972bf9bcaec032d4a130d60b0879894cd729df861e0c |
#!/usr/bin/env python
from rdkit import Chem, rdBase
from rdkit.Chem import rdDepictor
from rdkit.Chem import Draw
from rdkit.Chem import AllChem
from rdkit.Chem.Draw import rdMolDraw2D
from json import dumps
COLS = [(1.0, 0.0, 0.0), (0.0, 1.0, 0.0),
(0.0, 0.0, 1.0), (1.0, 0.55, 1.0)]
def get_hit_atoms_and_... | rdkit/rdkit | Docs/Book/data/test_multi_colours.py | Python | bsd-3-clause | 2,011 | [
"RDKit"
] | 6132fc2ada517af25dfdd17278029080183ad9b757f6104f30c2805d6680fa0f |
# though there are other node modules in the image, they are all owned by the npm APK package, which means engine will ignore them
pkgs = {
"/node_modules/lodash/package.json": {
"name": "lodash",
"lics": ["MIT"],
"versions": ["4.17.4"],
"latest": "4.17.4",
"origins": [
... | anchore/anchore-engine | tests/functional/clients/standalone/package_list/fixtures/npms.py | Python | apache-2.0 | 491 | [
"Dalton"
] | fad578023495feadd5f0fadd721a357bbb819efa8c4612bf958457e48e1577fa |
#!/usr/bin/env python
from cp2k_tools.tools import *
from cp2k_tools.parser import *
from cp2k_tools.generator import *
import sys
from docopt import docopt
def extract_last_frame():
"""Usage: extract_last_frame.py [-h] [XYZINPUT] [XYZOUTPUT]
Extract the last frame from a XYZ file
Arguments:
XYZINPUT ... | dev-zero/cp2k-tools | cp2k_tools/cli.py | Python | apache-2.0 | 4,441 | [
"CP2K"
] | bc3302db1df4f0a3dc2d3b2185dae547dba479b28b387dd81f063def4d315027 |
"""Tumor only somatic calling with Pisces.
https://github.com/Illumina/Pisces
"""
import os
import shutil
import pysam
from bcbio import utils
from bcbio.distributed.transaction import file_transaction
from bcbio.pipeline import shared
from bcbio.pipeline import datadict as dd
from bcbio.provenance import do
from bc... | vladsaveliev/bcbio-nextgen | bcbio/variation/pisces.py | Python | mit | 4,024 | [
"pysam"
] | a84618a0cd7db5cdb63c1621194a90dd6296d5d2d20abd985dead8fe3ab23a35 |
# File: testing.py
# Author: Oliver Steele
# Description: Script compiler testing framework
# * P_LZ_COPYRIGHT_BEGIN ******************************************************
# * Copyright 2001-2004 Laszlo Systems, Inc. All Rights Reserved. *
# * Use is subject to license terms. ... | mcarlson/openlaszlo | WEB-INF/lps/server/sc/testing.py | Python | epl-1.0 | 10,503 | [
"VisIt"
] | e7820b0b137d5e184a00b32003d8618ee4005937b0c2de96d5121d3561c0a783 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | Huyuwei/tvm | vta/python/vta/top/graphpack.py | Python | apache-2.0 | 13,086 | [
"VisIt"
] | 6a41c8c0749d366dc65871f4e18647ece6479a20474789bd7ce4b185ff43bf99 |
# ============================================================================
#
# Copyright (C) 2007-2010 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | kurtraschke/camelot | camelot/container/chartcontainer.py | Python | gpl-2.0 | 5,735 | [
"VisIt"
] | 657b93bc0992252de97698aa303e97f5518d3281ea4390dfe47b657fe557d542 |
class MooseException(Exception):
"""
An Exception for MOOSE python applications.
"""
def __init__(self, *args):
message = ' '.join([str(x) for x in args])
Exception.__init__(self, message)
| liuwenf/moose | python/mooseutils/MooseException.py | Python | lgpl-2.1 | 222 | [
"MOOSE"
] | ba8b8f0c889c19de9990962761fb729173bc734651b9a05ad8cc3b3bddf5e546 |
"""
################################################################################
# Copyright (c) 2003, Pfizer
# Copyright (c) 2001, Cayce Ullman.
# Copyright (c) 2001, Brian Matthews.
#
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provid... | krux/adspygoogle | adspygoogle/SOAPpy/Types.py | Python | apache-2.0 | 51,936 | [
"Brian"
] | 4c815bd6ea62dda5611b81930f7aa04d496a520c9aa8fdab0f5d3c72872faccd |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/diatomic.py | Python | lgpl-3.0 | 10,732 | [
"Psi4"
] | 241e74005a9ca18957028b15fb8627deba69e8810b2e21fa5a6f12b9b595f8be |
""" Module for validation of incoming inputs.
TODO: Refactor BaseController references to similar methods to use this module.
"""
from galaxy import exceptions
from galaxy.util.sanitize_html import sanitize_html
def validate_and_sanitize_basestring( key, val ):
if not isinstance( val, basestring ):
r... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/util/validation.py | Python | gpl-3.0 | 1,470 | [
"Galaxy"
] | 02a1d84e7a6a06ddb488053dfb31824f708ba3688660bc1fb36df9cb24b69b8f |
##
## nw_spectrum
##
## Kenneth Lopata
## Last modified: 2013-03-08
##
## Python script for parsing NWChem output for TDDFT/vspec excitation
## energies, and optionally Lorentzian broadenening the spectra. For
## online help run:
##
## nw_spectrum --help
##
##
import sys
import textwrap
from optparse import OptionPar... | rangsimanketkaew/NWChem | contrib/parsers/nw_spectrum.py | Python | mit | 22,171 | [
"NWChem"
] | cdde43def8637a11ef0917c7d49f09c53a22c3272100112fcb96d7755a621218 |
#!/usr/binenv python
# py2/3 compatibility
from __future__ import absolute_import, division, print_function, unicode_literals
from textwrap import dedent
import netCDF4 as nc4
import numpy as np
from datetime import datetime, timedelta
from gridded.utilities import get_dataset
class Time(object):
_const_time ... | NOAA-ORR-ERD/gridded | gridded/time.py | Python | unlicense | 7,412 | [
"NetCDF"
] | d4d18b20cf6b100a12f3f577f1fcf245c12c6d1a47c7d0f393899c1b96e79aa2 |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/grad/rhf.py | Python | apache-2.0 | 16,084 | [
"PySCF"
] | 05b947e510faac66cff73bc44ccac55f649f6becf91cefcf6db78de818cdd300 |
#!/usr/bin/env python
# encoding: utf-8
# Copyright (C) 2015 John Törnblom
'''
rule-specification language (RSL) interpreter.
'''
import sys
import logging
import os
import xtuml
import rsl.version
complete_usage = '''
USAGE:
%s [-arch <string>] ... [-import <string>] ... [-include <string>] ... [-d <integer... | john-tornblom/pyrsl | rsl/gen_erate.py | Python | gpl-3.0 | 7,431 | [
"BLAST"
] | 991d6cbb90ee10924e0c30cec97c625c58c25017abc6fe9c4fcaefd863ae0843 |
# inporb.py -- Molcas orbital format
#
# molpy, an orbital analyzer and file converter for Molcas files
# Copyright (c) 2016 Steven Vancoillie
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ... | steabert/molpy | molpy/inporb.py | Python | gpl-2.0 | 9,707 | [
"MOLCAS"
] | a7e8d1645abc505f4b9776af90eecd782faca05f8939a08273a60ac9d58dc65a |
"""
.. automodule::
:members:
Trajectories Class
==================
.. autoclass:: Trajectories
:members:
"""
try:
from mayavi import mlab
from tvtk.tools import visual
except:
print('mayavi not installed')
import numpy as np
import scipy as sp
import pdb
import matplotlib.pyplot as plt
import py... | pylayers/pylayers | pylayers/mobility/trajectory.py | Python | mit | 23,654 | [
"Mayavi"
] | 39fb846199fe3f810328b822503550b929b0dd9ca75f43a8d7ad5202476157c9 |
#!/usr/bin/env python
"""Based on cairo-demo/X11/cairo-demo.c"""
import cairocffi as cairo
import gi
gi.require_version("Gtk", "3.0")
from gi.repository import Gtk
SIZE = 30
def triangle(ctx):
ctx.move_to(SIZE, 0)
ctx.rel_line_to(SIZE, 2 * SIZE)
ctx.rel_line_to(-2 * SIZE, 0)
ctx.close_path()
def ... | emperrors/fetchLinuxIDC | cairo_bin/test_gtk.py | Python | gpl-3.0 | 2,617 | [
"Bowtie"
] | f691a1e8e9127597ec962140b524d621ccb03c27c3078010cf7e2156a0f1b726 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | capoe/espressopp.soap | src/analysis/XDensity.py | Python | gpl-3.0 | 1,841 | [
"ESPResSo"
] | 77235df4f805a5d578f507d814b849f0f27ebea2b185f06954691195681bc9b5 |
'''
cheshift plugin-in: Validate your protein model with PyMOL
Described at PyMOL wiki: http://www.pymolwiki.org/index.php/cheshift
Author : Osvaldo Martin
email: aloctavodia@gmail.com
Date: September 2014
License: GNU General Public License
Version 3.6
'''
import Tkinter
from Tkinter import *
import tkFileDialog
imp... | aloctavodia/cheshift | cheshift/__init__.py | Python | gpl-3.0 | 45,088 | [
"PyMOL"
] | 602aa1b2de3f25be06d7c0d3a10caece66ab530fba475d0a0048ba033080ca3e |
""" This object is a wrapper for setting and getting jobs states
"""
import datetime
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.WorkloadManagementSystem.Client.JobState.JobManifest import JobManifest
from DIRAC.WorkloadManagementSystem.Client import JobStatus
from DIRAC.WorkloadManagementSystem.DB.JobDB impor... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/Client/JobState/JobState.py | Python | gpl-3.0 | 16,139 | [
"DIRAC"
] | 32ae72d51b4667a903408403d53f4ac0010c16f1b687fe33c5f181493d18ef7b |
# This script processes MIMIC-III dataset and builds longitudinal diagnosis records for patients with at least two visits.
# The output data are cPickled, and suitable for training Doctor AI or RETAIN
# Written by Edward Choi (mp2893@gatech.edu)
# Usage: Put this script to the foler where MIMIC-III CSV files are locate... | mp2893/med2vec | process_mimic.py | Python | bsd-3-clause | 4,885 | [
"VisIt"
] | 3257e2efd3d325deb87f1bb57810ceda6edccb52115a6162ceb586733d64d47d |
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RSnpstats(RPackage):
"""SnpMatrix and XSnpMatrix classes and methods.
Classes and ... | iulian787/spack | var/spack/repos/builtin/packages/r-snpstats/package.py | Python | lgpl-2.1 | 1,232 | [
"Bioconductor"
] | e24b2c6ab07d9a5ec4d063a58b6e1cc731cb8d219a0a981a921d66303efbaf59 |
# -*- coding: utf-8 -*-
# Copyright (c) 2010-2016 OpenStack Foundation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... | notmyname/swift | test/unit/proxy/test_server.py | Python | apache-2.0 | 441,849 | [
"MOOSE"
] | 875547fbb5def84b817107f26ab42bf5fdf1ed5bcc10f93241ab7303c1ea2585 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2012 Paul Franklin
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | Nick-Hall/gramps | gramps/gen/plug/_docgenplugin.py | Python | gpl-2.0 | 4,506 | [
"Brian"
] | 717b2991d65eda42877ce521ee1bec3f047c2ec4fd2948d4d0d019f783a19855 |
#!/usr/bin/env python
# $Id: cleanup.py 2459 2008-11-12 17:31:10Z oliver $
"""Remove files from a staged SGE python script: parses the SGE log
file to ssh into the node and remove the stage dir. Can also parse
some of my older Charmm/SGE log scripts that contain hostname and
scratch dir information.
"""
import sys,os... | pslacerda/GromacsWrapper | staging/extra/cleanup.py | Python | gpl-3.0 | 3,023 | [
"CHARMM"
] | e278eb1fc59ff0416820cbd87a43e3eca4a7533cefb7140598152ae08f5ff78d |
"""Implementation of magic functions for interaction with the OS.
Note: this module is named 'osm' instead of 'os' to avoid a collision with the
builtin.
"""
# Copyright (c) IPython Development Team.
# Distributed under the terms of the Modified BSD License.
import io
import os
import re
import sys
from pprint import... | unnikrishnankgs/va | venv/lib/python3.5/site-packages/IPython/core/magics/osm.py | Python | bsd-2-clause | 28,494 | [
"VisIt"
] | d25f7d73a416800a81081bc5a6ad3aac26c2844bb5357d98b69b34aec06d8df2 |
# Copyright (c) RedFantom 2017
# For license see LICENSE
from ttkwidgets import LinkLabel
from tests import BaseWidgetTest
import tkinter as tk
class TestLinkLabel(BaseWidgetTest):
def test_linklabel_init(self):
label = LinkLabel(self.window, link="www.google.com", text="Visit Google")
label.pack(... | RedFantom/ttkwidgets | tests/test_linklabel.py | Python | gpl-3.0 | 1,187 | [
"VisIt"
] | 63dd51ba75f68fa40cb2370b499e9bb8e52eb26002c04a370b8f6a6bacb02cc2 |
# coding=utf-8
from django.conf import settings
from django.contrib.auth.models import User
from django.test import TestCase
from feedback.auth import VeranstalterBackend, TakeoverBackend, FSAccountBackend
from feedback.models import Person
from feedback.tests.tools import get_veranstaltung
class VeranstalterBacken... | d120/pyfeedback | src/feedback/tests/test_auth.py | Python | agpl-3.0 | 2,267 | [
"Brian"
] | 44419b6a91b8eb77afddf17e1f62d1249ee5c5449eec4f29ae1c2e3e7d0991eb |
# -*- coding: utf-8 -*-
from __future__ import division, print_function, unicode_literals
import os
import time
from nikola import filters
# !! This is the configuration of Nikola. !! #
# !! You should edit it to your liking. !! #
# ! Some settings can be different in different languages.
# ! A comment stating (... | humitos/argentinaenpython.com | web/conf.py | Python | gpl-2.0 | 62,554 | [
"VisIt"
] | 16c9a0ec8fb3b9a35be22c8922dc7711d4dd1eff7cd5bfb2f2755d602c567039 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | Achuth17/scikit-bio | skbio/sequence/_exception.py | Python | bsd-3-clause | 810 | [
"scikit-bio"
] | 4eaf2edad5529b66812aefeed1d6e46b1e104bca925b94147c7652effbe8552f |
""" Module for similarity boosed QSAR project AZ + TUM
author: Tobias Girschick; tobias.girschick@in.tum.de
TUM - I12 (wwwkramer.in.tum.de/girschic)
dependencies:
"""
import os,sys
import orange
from cinfony import rdk
from rdkit import DataStructs
from rdkit.Chem.Fingerprints im... | JonnaStalring/AZOrange | azorange/AZutilities/SimBoostedQSAR.py | Python | lgpl-3.0 | 22,063 | [
"RDKit"
] | 0c26a7f71f71cba8899c7c9f1c511c160d7e372ab7e8891da98495610a4fd335 |
# Copyright 2015 ClusterHQ. See LICENSE file for details.
'''
Python wrappers for **libzfs_core** library.
*libzfs_core* is intended to be a stable, committed interface for programmatic
administration of ZFS.
This wrapper provides one-to-one wrappers for libzfs_core API functions,
but the signatures and types are more... | ClusterHQ/pyzfs | libzfs_core/__init__.py | Python | apache-2.0 | 2,329 | [
"VisIt"
] | 3d7c3da7ee8f55ef2f2a0682e991457d4248fbb614752be7ecf6ca5fc32854bc |
# -*- coding: utf-8 -*-
"""Create pRF time courses models."""
# Part of py_pRF_mapping library
# Copyright (C) 2016 Ingo Marquardt
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation, either vers... | ingo-m/py_pRF_mapping | pyprf/analysis/model_creation_timecourses.py | Python | gpl-3.0 | 16,966 | [
"Gaussian"
] | e6f51cf6e269740dcdc243ce9654b6eae58f7e9558852c04268f34248a5e5e95 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | USCDataScience/NN-fileTypeDetection | classifiers/gaussianNB.py | Python | apache-2.0 | 1,570 | [
"Gaussian"
] | bc373d3ea92fab0197f992da28254ba141325ba97c2580802e6d634c0d97e522 |
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