text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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from behave import *
@given(u'main page loaded')
def given_main_page_loaded(context):
context.browser.visit('https://google.com/')
@when(u'type "{query_string}" and press enter')
def typed_and_pressed_enter(context, query_string):
context.browser.fill('q', query_string)
button = context.browser.find_by_na... | danielgimenes/bdd_python_tools_test | behave+splinter/steps/google_test.py | Python | mit | 545 | [
"VisIt"
] | 07fd2aab49766b0442522a1581a9d2f80607c15bd11517587473ec2709391da3 |
"""Implementation of the WebSocket protocol.
`WebSockets <http://dev.w3.org/html5/websockets/>`_ allow for bidirectional
communication between the browser and server.
WebSockets are supported in the current versions of all major browsers,
although older versions that do not support WebSockets are still in use
(refer ... | Batterfii/tornado | tornado/websocket.py | Python | apache-2.0 | 40,818 | [
"VisIt"
] | cbdeb2cfb635b14e80e18611f9861348ecb0f0ca78348bb1b96b3938e890d0ac |
#!/usr/bin/env python
""" Ping a list of services and show the result
"""
__RCSID__ = "$Id$"
import sys
from DIRAC import S_OK, S_ERROR, gLogger, exit
from DIRAC.Core.Base import Script
# Define a simple class to hold the script parameters
class Params:
def __init__( self ):
self.raw = False
self.pingsT... | DIRACGrid/DIRACDocs | source/DeveloperGuide/AddingNewComponents/DevelopingCommands/dirac-ping-info.py | Python | gpl-3.0 | 1,504 | [
"DIRAC"
] | 4399ec893c84ca1d299d1b3c1e83b066975fd7fe492832cf490dc781fd89a25f |
#!/usr/bin/env Python
##########################################################################
#
# Copyright (C) 2015-2018 Sam Westreich
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation;
#
# T... | transcript/samsa_v2 | python_scripts/DIAMOND_general_RefSeq_analysis_counter.py | Python | gpl-3.0 | 8,393 | [
"BLAST"
] | 40f55e4680b6a9d0dec9a9aefe739001e1c1c9940cdacc61e406b47db94db02a |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
#
ANSIB... | sgerhart/ansible | lib/ansible/modules/network/avi/avi_backupconfiguration.py | Python | mit | 4,821 | [
"VisIt"
] | 52370a22d8bf163ddacd05a9edd39999a32a43861158c8c6622fecf316a5c663 |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2016 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of ... | kannon92/psi4 | psi4/driver/qcdb/molpro2.py | Python | gpl-2.0 | 27,551 | [
"CFOUR",
"Psi4"
] | 9d30cb78aa127c59aca63afd2838e348b2d1b0568342f42dd42bdc23e8c9ca14 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | Laurawly/tvm-1 | tests/python/unittest/test_te_autodiff.py | Python | apache-2.0 | 11,590 | [
"VisIt"
] | 8c1fc8f07f4ea93618f9b93a8fe81614c25a4d97c42c2c5051d1c5cfe6d9ca50 |
# Adafruit BNO055 Absolute Orientation Sensor Library
# Copyright (c) 2015 Adafruit Industries
# Author: Tony DiCola
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, inc... | francisc0garcia/autonomous_bicycle | src/classes/BNO055.py | Python | apache-2.0 | 28,496 | [
"CRYSTAL"
] | d572ae30d0e8efb22624c0aa37f4d1871b37ffea2ca39a0f75757fe319d30b1b |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_returnedsaledialog.py | Python | gpl-2.0 | 6,397 | [
"VisIt"
] | fb152a13260479d479f025a873cd6f5d625ef270db1702febe2efbfa653c8512 |
# encoding: UTF-8
#
# Copyright 2012-2013 Alejandro Autalán
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License version 3, as published
# by the Free Software Foundation.
#
# This program is distributed in the hope that it will be useful, but
#... | mhcrnl/pygubu | pygubudesigner/properties.py | Python | gpl-3.0 | 26,413 | [
"FLEUR"
] | f4090d08d5e9828194bddae5606a9746f6a696b8ec5d7dddc893e372639cd937 |
#!/usr/bin/env python
'''
$Id: drawMIweb.py 1390 2013-04-16 00:42:22Z apandini $
Copyright (C) 2009-13 Alessandro Pandini
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the Lic... | jkleinj/GSAtools | Rscripts/pymolscripts/drawMIweb.py | Python | gpl-3.0 | 13,337 | [
"PyMOL"
] | 4a4b65f7966894812f417702ccf09ac9a907a81427a6c142ade151d8195422f7 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2017 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | mattwthompson/mdtraj | tests/test_distance.py | Python | lgpl-2.1 | 7,156 | [
"MDTraj"
] | 1bc8f4db7d12188d05626c7e0b342954f3f9b601184db4dd098e2078279ea102 |
#!/usr/bin/env python
# -*- coding=utf-8 -*-
# code based on http://gvallver.perso.univ-pau.fr/?p=587
import sys
import numpy as np
import os
import argparse
import matplotlib.pyplot as plt
from matplotlib.collections import LineCollection
from matplotlib.gridspec import GridSpec
from pymatgen.io.vasp.outputs import... | albalu/dekode | plot_BSDOS.py | Python | mit | 8,006 | [
"VASP",
"pymatgen"
] | 6a6a3c06bfbbad6b369a36bb4d39fd05ea9d00bb19f542fde6702c03870ed629 |
def find_closest_point_pd(pourbaix_diagram_object):
from pymatgen.analysis.pourbaix.plotter import PourbaixPlotter
import matplotlib.pyplot as plt
import numpy as np
from pymatgen.util.coord_utils import in_coord_list
from pymatgen.analysis.pourbaix.maker import PREFAC
lw = 1
limits = [[-2, 16],[-3, 3]]... | raulf2012/pourbaix_pymatgen | find_closest_point_pd.py | Python | mit | 4,017 | [
"pymatgen"
] | bfeed11efd5777cf69b41413716f897ba22fdf5345426e61911997b1121bb50e |
import os
import sys
import vtkAll as vtk
from ddapp import botpy
import math
import time
import types
import functools
import numpy as np
from ddapp import transformUtils
from ddapp import lcmUtils
from ddapp.timercallback import TimerCallback
from ddapp.asynctaskqueue import AsyncTaskQueue
from ddapp import objectmo... | rdeits/director | src/python/ddapp/tasks/taskuserpanel.py | Python | bsd-3-clause | 10,831 | [
"VTK"
] | 6c05a4736038025841b992cb05a33880cc12ad650f733f128d6a61039e36319d |
# dirstate.py - working directory tracking for mercurial
#
# Copyright 2005-2007 Matt Mackall <mpm@selenic.com>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.
import errno
from node import nullid
from i18n import _
import scmutil... | spraints/for-example | mercurial/dirstate.py | Python | gpl-2.0 | 29,458 | [
"VisIt"
] | 065e3962f30171b06f39363c1c5f9e5d5e8ca517cb077d286d1ad7ff1c4c25cd |
Aimport os
import sys
import pytest
import numba
from matplotlib import cm
from matplotlib.ticker import LinearLocator, FormatStrFormatter
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
import numpy as np
import functools
import time
from numba import jit, njit
from PIL import Image
import pand... | CompPhysics/MachineLearning | doc/src/week39/codes/test12.py | Python | cc0-1.0 | 26,978 | [
"Gaussian"
] | d5f2924253f29991827f138b561514c81af16fc89c8d9b04efc0338ea0569b47 |
"""
Acceptance tests for the teams feature.
"""
import json
import random
import time
from uuid import uuid4
import ddt
from dateutil.parser import parse
from selenium.common.exceptions import TimeoutException
from common.test.acceptance.fixtures import LMS_BASE_URL
from common.test.acceptance.fixtures.course import ... | ahmedaljazzar/edx-platform | common/test/acceptance/tests/lms/test_teams.py | Python | agpl-3.0 | 84,274 | [
"VisIt"
] | 994003c5fbb6e6e9dbb2159c4a1f0a535756dcbe4f81e4428838e7e1bdcd8aff |
"""Tests for next/prev message navigation."""
import os
import re
from rust_test_common import *
# Test data for message order tests.
#
# 'command': The command to run.
# 'path': The path to open.
# 'messages': List of expected messages. Tuples of:
# (sequence, path, level, rowcol, inline_highlight, raw_highligh... | rust-lang/sublime-rust | tests/test_message_order.py | Python | mit | 8,543 | [
"VisIt"
] | b87b9459b64aca2fcd9531d03adc755a2309a7779282b581de28a4fdb09daa85 |
# This file is part of MyPaint.
# Copyright (C) 2012 by Andrew Chadwick <andrewc-git@piffle.org>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your ... | kragniz/mypaint | gui/colors/hcywheel.py | Python | gpl-2.0 | 43,177 | [
"FLEUR"
] | ac9d072dcf0566d2e5c875c5f9c73ea85857dd7920063de4b390276d307f21ce |
#
# Copyright (C) 2003-2006 greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" Supplies a class for worki... | greglandrum/rdkit | rdkit/Chem/Fingerprints/DbFpSupplier.py | Python | bsd-3-clause | 4,652 | [
"RDKit"
] | a7f5616e2e74b9e1397a0ad87eb00cbdc6042ee82f89ec4d4f8a36729ecb29a7 |
# The MIT License
#
# Copyright 2014, 2015 Piotr Dabkowski
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the 'Software'),
# to deal in the Software without restriction, including without limitation the rights
# to use, copy, modif... | hexpl0it/plugin.video.genesi-ita | resources/lib/libraries/js2py/translators/pyjsparser.py | Python | gpl-3.0 | 103,483 | [
"VisIt"
] | 8eeae85d384f9162a15f20d01c98b2cfb1d2ad09d7a5014fc0793fde537041cf |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
import tempfile
import numpy as np
from pymatgen import Structure
from pymatgen.util.testing import PymatgenTest
from pymatgen.io.abinit.inputs import (BasicAbinitInput, BasicMultiDat... | gVallverdu/pymatgen | pymatgen/io/abinit/tests/test_inputs.py | Python | mit | 10,885 | [
"ABINIT",
"pymatgen"
] | e7a140b6306369548da374d5eee81e43798f3673ea9fe5c5f9aefac84d12f84f |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# sssmonitor - Global SSS monitor back end
# Copyright (C) 2003-2014 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Lic... | heromod/migrid | mig/shared/functionality/sssmonitor.py | Python | gpl-2.0 | 8,347 | [
"Brian"
] | f16d233d4c11de859a421617ffb109ff086f342a71ac91a3564b961643f2ef05 |
import ast
import codecs
import os
from subprocess import check_call
from distutils.command.sdist import sdist
from pip.download import PipSession
from pip.req import parse_requirements
from setuptools import find_packages, setup
name = "django-gitstorage"
package_name = "gitstorage"
long_desc_file = "README.rst"
c... | bors-ltd/django-gitstorage | setup.py | Python | gpl-3.0 | 2,122 | [
"VisIt"
] | 889f76609ed9cc28bcae6aaaf0885a183395a10afef8f105e382cf2bd560b30f |
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals
from nose.tools import * # noqa PEP8 asserts
from osf_tests import factories
from tests.base import OsfTestCase
from website.util import api_url_for
from website.views import find_bookmark_collection
class Te... | aaxelb/osf.io | osf_tests/test_search_views.py | Python | apache-2.0 | 15,088 | [
"Brian"
] | e5397e2b39f404778c7a001f0506341cd14c5d7b47852d20925de86bc62c3a70 |
# -*- coding: utf-8 -*-
#
# define_hill_tononi.py
#
# This file is part of the NEST Instrumentation App.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST Instrumentation App is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Softw... | compneuronmbu/NESTConnectionApp | static/examples/define_hill_tononi_3D.py | Python | gpl-2.0 | 57,744 | [
"Gaussian"
] | a56d9400bebbb12012670d59ee2f15328c26c83a3d7fce44db5d25801311feab |
# Program to spin a wheel and choose a language
# Created By Jake Huxell For Advent Of Code 2015
"""
Some notes about the program.
TODO:
1. Upkeep and bug fix as I go along
"""
# Get pygame libraries
import pygame, sys, random
from pygame.locals import *
# Generate random seed for the program - Use current time
ra... | Huxellberger/SpinnerOfSyntax | Wheel.py | Python | gpl-2.0 | 8,691 | [
"exciting"
] | 0f4435def4bc7d4042a39a48960f9d29dacf054bc244a70557c87ccc519a95c3 |
from __future__ import division
import pickle
from io import BytesIO
import numpy as np
import scipy.sparse
from sklearn.datasets import load_digits, load_iris
from sklearn.model_selection import train_test_split
from sklearn.model_selection import cross_val_score
from sklearn.externals.six.moves import zip
from sk... | clemkoa/scikit-learn | sklearn/tests/test_naive_bayes.py | Python | bsd-3-clause | 23,990 | [
"Gaussian"
] | 16996561dbba647420e16b225f9bbd18843fa010b46d16f60e3e63fd20da4c08 |
# Copyright (c) 1998-2000 John Aycock
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, modify, merge, publ... | asherkhb/coge | bin/last_wrapper/Bio/Parsers/spark.py | Python | bsd-2-clause | 18,936 | [
"Biopython"
] | 77ccd79b0e441708b969e6c9515c4f412b63b6d965451d20f688ba6f0b7d6ba5 |
#!/usr/bin/env python
from octopus.shelltool.ResultProcessor import BaseResultProcessor,NodeResultPropertyCleaner
class NodeResult(NodeResultPropertyCleaner):
def getElementType(self):
return 'node'
def getId(self):
return self.result['id']
def getProperties(self):
props = self.pro... | octopus-platform/joern | python/joern-tools/joern/shelltool/PlotResult.py | Python | lgpl-3.0 | 868 | [
"Octopus"
] | 2b543fc3bbccba51e0d5d49c1de8b5f87b62e4ab315c55a1940e245494b26d66 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# create tensor ellipsoids
# Create the RenderWindow, Renderer and interactive renderer
#
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.SetMultiSamples(0)
... | hlzz/dotfiles | graphics/VTK-7.0.0/Filters/Modeling/Testing/Python/TenEllip.py | Python | bsd-3-clause | 2,810 | [
"VTK"
] | 6c7043574b2c3238e3ab68422f1b89b0757e8635f01a70fd2f4b16092546defc |
# -*- coding: utf-8 -*-
from setuptools import setup, find_packages
with open('README.md') as f:
readme = f.read()
with open('LICENSE') as f:
license = f.read()
with open('yaps2/version.py') as f:
exec(f.read())
setup(
name='yaps2',
version=__version__,
description='Yet Another Pipeline Set... | indraniel/yaps2 | setup.py | Python | bsd-2-clause | 1,231 | [
"pysam"
] | 01bc5c55e2e77d41e92ced3ecce15465cfd8e011ac446290a6eabee8e1bc63dd |
#!/usr/bin/env python
# Perform Path Similarity Analysis on a submatrix
"""Perform Path Similarity Analysis (PSA) using MDAnalysis.analysis.psa.
Provide all trajectories and topology files in a JSON input file (two
lists, one with topology files, the other with trajectory files) or on
the command line. There *must* b... | Becksteinlab/SPIDAL-MDAnalysis-Midas-tutorial | rp/mdanalysis_psa_partial.py | Python | bsd-3-clause | 6,248 | [
"MDAnalysis"
] | 0dba90c4120feb591400f1a0faa55ace335d54a2817a86d18b49e828db59ad09 |
import numpy as np
import natsort
import pandas as pd
import sys, os, re
import time
import netCDF4 as nc
from scipy import integrate
from etl.spa_ncdf import spa_netCDF4
__author__ = 'Rhys Whitley'
__email__ = 'rhys.whitley@gmail.com'
__created__ = "2015-10-15"
__modified__ = time.strftime("%c")
__version__ = '1.0'... | rhyswhitley/savanna_iav | src/data_preproc/etl/SPAoutput_ETL.py | Python | cc0-1.0 | 12,029 | [
"NetCDF"
] | 2463e9835fc7dfda7b5ac9fcf0b8ff0a296325b65459c64e87c61361b06b0ebf |
"""Traits-based GUI for head-MRI coregistration"""
# Authors: Christian Brodbeck <christianbrodbeck@nyu.edu>
#
# License: BSD (3-clause)
import os
from ..externals.six.moves import queue
import re
from threading import Thread
import traceback
import warnings
import numpy as np
from scipy.spatial.distance import cdis... | alexandrebarachant/mne-python | mne/gui/_coreg_gui.py | Python | bsd-3-clause | 55,647 | [
"Mayavi"
] | a87ff8a2975524734f96810edd1c91b16879b66e534f67d70269283af8f2a612 |
# -*- coding: utf-8 -*-
# SyConn - Synaptic connectivity inference toolkit
#
# Copyright (c) 2016 - now
# Max-Planck-Institute of Neurobiology, Munich, Germany
# Authors: Philipp Schubert, Joergen Kornfeld
from PythonQt import QtGui, Qt, QtCore
from PythonQt.QtGui import QTableWidget, QTableWidgetItem
try:
import ... | StructuralNeurobiologyLab/SyConn | syconn/analysis/syconn_knossos_viewer.py | Python | gpl-2.0 | 41,864 | [
"NEURON"
] | b72553805a4c9fce4e4b4a4215b1e4eb1eb9a171310f0561beda8fbfa8ded346 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2015-2015: Alignak team, see AUTHORS.txt file for contributors
#
# This file is part of Alignak.
#
# Alignak is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free So... | ddurieux/alignak | alignak/stats.py | Python | agpl-3.0 | 7,812 | [
"CRYSTAL"
] | afe1309db71ed51adaa03a98919dbedb9d925f30067ca0c1cca45222c4e8ca21 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
# -*- coding: utf-8 -*-
"""
================
desiutil.sklearn
================
Useful functions from the sklearn python package.
"""
class GaussianMixtureModel(object):
"""Read and sample from a pre-defined Gaussian mixture model.
Parameters
... | desihub/desiutil | py/desiutil/sklearn.py | Python | bsd-3-clause | 4,488 | [
"Gaussian"
] | 175d2cd9f396a9ae673ccd267c13eac54edf9af0ab53e8aa6227b2f6ca569562 |
#!/usr/bin/env python
#
# Code related to ESET's Linux/Moose research
# For feedback or questions contact us at: github@eset.com
# https://github.com/eset/malware-research/
#
# This code is provided to the community under the two-clause BSD license as
# follows:
#
# Copyright (C) 2015 ESET
# All rights reserved.
#
# Re... | eset/malware-research | moose/ida/mips_identify_syscalls.py | Python | bsd-2-clause | 20,841 | [
"MOOSE"
] | fd9fb3e8d55985dc2a0670767cc65061748f1d724f08d6ca2db1635a56dcc177 |
#
# This source file is part of appleseed.
# Visit https://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2016-2018 Esteban Tovagliari, The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaini... | appleseedhq/appleseed-maya | scripts/appleseedMaya/register.py | Python | mit | 7,230 | [
"VisIt"
] | c981a435dbfbaa43cfc3126544fe5c4170d5da468d19bf89e1623c75964e86c8 |
#!/opt/local/bin/ipython
#"""
#Usage:
#./subim_gaussfit.py @file_list.txt x_cen y_cen [outfile.txt]
#%run subim_gaussfit.py @file_list.txt x_cen y_cen [outfile.txt] in an interactive session
# or %run subim_gaussfit.py @file_list.txt @coord_list.txt [outfile.txt]
#"""
import sys
#sys.path.append('/Users/adam/classes/pr... | ufoym/agpy | agpy/subim_gaussfit.py | Python | mit | 6,196 | [
"Gaussian"
] | 8596fa86212d39fb4fe03420eb806b1715eac5c1b5127b5124843d2ae3e1cedb |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
=========================================================
Logit function
=========================================================
Show in the plot is how the logistic regression would, in this
synthetic dataset, classify values as either 0 or 1,
i.e. class one or two, u... | DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/examples/linear_model/plot_logistic.py | Python | mit | 1,426 | [
"Gaussian"
] | 83e589dcada1db32ac80411bb18360f12568f62ff558b2d24adf5848d9df5ddf |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publi... | arunkgupta/gramps | gramps/plugins/textreport/summary.py | Python | gpl-2.0 | 10,795 | [
"Brian"
] | 40cacfb55145488c3bd98e3be8e16a08628aeedfbb2e8531e6ccdbdb10e2fd2f |
from io import BytesIO
from threading import Lock
import contextlib
import itertools
import os.path
import pickle
import shutil
import tempfile
import unittest
import sys
import numpy as np
import pandas as pd
import xarray as xr
from xarray import Dataset, open_dataset, open_mfdataset, backends, save_mfdataset
from ... | NicWayand/xray | xarray/test/test_backends.py | Python | apache-2.0 | 44,435 | [
"NetCDF"
] | e66413f894bd279d9ceec0ac3a9a832a082c958552f9e42f85e0f5526b02f1b9 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
############################################################################
#
# Copyright (C) 2010-2014
# Christian Kohlöffel
# Jean-Paul Schouwstra
#
# This file is part of DXF2GCODE.
#
# DXF2GCODE is free software: you can redistribute it and/or modify
# it un... | oryxr/dxf2gcode | dxf2gcode.py | Python | gpl-3.0 | 43,333 | [
"VisIt"
] | 868cb21da503026ed8c9da934cbe2a2d458e16350e81405d2c36a39d11ed3879 |
"""Tests for ΔCC½ algorithms."""
from __future__ import annotations
from unittest import mock
from dxtbx.model import Crystal, Experiment, ExperimentList, Scan
from dials.algorithms.statistics.cc_half_algorithm import CCHalfFromDials
from dials.array_family import flex
from dials.command_line.compute_delta_cchalf i... | dials/dials | tests/algorithms/statistics/test_delta_cchalf_algorithm.py | Python | bsd-3-clause | 4,068 | [
"CRYSTAL"
] | b29d446f0a0f657a63c5102c23c167c8fdc5550221f0c0544cb9d99393f36dfc |
'''
gaussian_filter.py - given a color RGB image, try different
Gaussian kernels for image blurring
Author: Esha Uboweja (euboweja)
'''
# Import Libraries
import cv2
import numpy as np
import sys
# Callback function for trackbar
def nothing(x):
pass
# Read image in color format
if len(sys.argv) > 1:
im_name =... | eknight7/cv_build18 | filtering/gaussian_filter.py | Python | mit | 1,547 | [
"Gaussian"
] | c8073b65c300f25a45ffd4e469e029e2319a9ef6f7d5dcbc81e2b9a784fac71e |
# -*- coding: utf-8 -*-
# Begin CVS Header
# $Source: /Volumes/Home/Users/shoops/cvs/copasi_dev/copasi/bindings/python/unittests/Test_CVersion.py,v $
# $Revision: 1.8 $
# $Name: $
# $Author: shoops $
# $Date: 2010/07/16 18:55:59 $
# End CVS Header
# Copyright (C) 2010 by Pedro Mendes, Virginia Tech I... | jonasfoe/COPASI | copasi/bindings/python/unittests/Test_CVersion.py | Python | artistic-2.0 | 2,030 | [
"COPASI"
] | 14cac34e75e25e75b3f5210f22cec63566b94eaff7ddea7ac81c23a8c8d44435 |
import os
import numpy as np
from ase import io, units
from ase.optimize import QuasiNewton
from ase.parallel import paropen, rank, world
from ase.md import VelocityVerlet
from ase.md import MDLogger
from ase.md.velocitydistribution import MaxwellBoltzmannDistribution
class MinimaHopping:
"""Implements the minima... | suttond/MODOI | ase/optimize/minimahopping.py | Python | lgpl-3.0 | 29,451 | [
"ASE"
] | 7990a56f331a194e46697fa35ce36184c7e42c711aa28d7943d5f174fd94e3d4 |
# -*- coding: utf-8 -*-
from __future__ import with_statement
import warnings
from almost import Approximate
from pytest import deprecated_call, raises
from conftest import various_backends
from trueskill import *
inf = float('inf')
nan = float('nan')
class almost(Approximate):
def normalize(self, value):
... | amit-bansil/netsci | robocompviz/trueskill/trueskilltest.py | Python | mit | 22,195 | [
"Gaussian"
] | af15818a89b5dade27df7ecc3054fffb7be709988e14d0af30e7555e221b8421 |
"""
Acceptance tests for Video.
"""
import os
from unittest import skipIf
from unittest.mock import patch
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.lms.courseware import ... | eduNEXT/edunext-platform | common/test/acceptance/tests/video/test_video_module.py | Python | agpl-3.0 | 8,636 | [
"VisIt"
] | a8c91807cdf2a48bde231d66df475e040f9925d3bf49a0b90a59ab7ceb568511 |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | mkuron/espresso | samples/load_checkpoint.py | Python | gpl-3.0 | 2,567 | [
"ESPResSo"
] | d5e1643a7f5c736ef94dadf11a09c5e50537f10d9f71bf15cfa2117073153f44 |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | tests/licensedcode/test_detection_datadriven.py | Python | apache-2.0 | 6,867 | [
"VisIt"
] | 12ca2ae891cecc60abb948e0fc07509f921a21c80c2a49ae553dceb27700d31d |
"""
Test topological fingerprints.
"""
import unittest
from deepchem.feat import CircularFingerprint
class TestCircularFingerprint(unittest.TestCase):
"""
Tests for CircularFingerprint.
"""
def setUp(self):
"""
Set up tests.
"""
from rdkit import Chem
smiles = 'CC(=O)OC1=CC=CC... | deepchem/deepchem | deepchem/feat/tests/test_circular_fingerprints.py | Python | mit | 1,648 | [
"RDKit"
] | 5a891fa42bca97517e8f55cbe30d1dd71013fbfc4f08348e7d1953a77bf13225 |
# Copyright (c) 2003-2016 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
# Licensed under the GPL: https://www.gnu.org/licenses/old-licenses/gpl-2.0.html
# For details: https://github.com/PyCQA/pylint/blob/master/COPYING
"""Python code format's checker.
By default try to follow Gu... | bgris/ODL_bgris | lib/python3.5/site-packages/pylint/checkers/format.py | Python | gpl-3.0 | 41,232 | [
"VisIt"
] | 581f29d28fc357bc9ce0df8ee4e8e5f86be8e33a6470fc8e1fe827b1cf2020c0 |
from string import Template
import logging
from hs_core.hydroshare.utils import get_resource_types
logger = logging.getLogger(__name__)
def parse_app_url_template(url_template_string, term_dict_list=()):
"""
This func replaces pre-defined HS Terms in url_template_string with real values;
Example: http://... | ResearchSoftwareInstitute/MyHPOM | hs_tools_resource/utils.py | Python | bsd-3-clause | 2,737 | [
"NetCDF"
] | 1057b95605578f12e66fe03ab6a8edabd268abbb37236ed8e10430d2acc93c04 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
The set of functions to generate random 2D/3D phantoms
The TomoPhantom package is released under Apache License, Version 2.0
@author: Daniil Kazantsev
"""
def rand_init2D(x0min, x0max, y0min, y0max, c0min, c0max, ab_min, ab_max):
import numpy as np
x0 = np.ran... | dkazanc/TomoPhantom | Wrappers/Python/tomophantom/randphant/generator.py | Python | apache-2.0 | 7,191 | [
"Gaussian"
] | 1c5d208b6b1cb66ee10ec57d499ea53e44eb04c17b5c1442f8ba78f65920b2ed |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | govarguz/espressopp | src/integrator/ExtAnalyze.py | Python | gpl-3.0 | 2,409 | [
"ESPResSo"
] | 61b1f626c678803884e58b5d719887fd748cd617a41208622a5bd0ff540b0eed |
from Circ import circ
from Enemy import enemy
from Particle import particle
from Poly import poly
from Projectile import projectile
from gameFunctions import *
class missile(projectile):
def __init__(this, pos, aim, speed):
'''initializes a missile projectile, used for the missileLauncher weapon'''
... | reid-vollett/Software_Quality_Project | Missile.py | Python | gpl-3.0 | 3,006 | [
"BLAST"
] | e162b196b4fe6834155f024d728ebdc10be0b541e32b0294c97f80ba1855f84f |
########################################################################
# $HeadURL$
# File : LCGPilotDirector.py
# Author : Ricardo Graciani
########################################################################
"""
LCGPilotDirector class,
It includes:
- basic configuration for LCG
- submit and monitor m... | Sbalbp/DIRAC | WorkloadManagementSystem/private/LCGPilotDirector.py | Python | gpl-3.0 | 3,871 | [
"DIRAC"
] | 5518b6497331373273a5f4f9de140808283c1f5a6d7a5c8ebdd5ca047b5b6f81 |
import unittest
from splinter import Browser
class GoogleTestCase(unittest.TestCase):
def setUp(self):
self.browser = Browser('phantomjs')
self.browser.visit('http://google.com')
def test_check_title(self):
assert self.browser.title == 'Google'
if __name__ in ('main', '__main__'):
... | josemazo/learning-splinter-phantomjs | the_phantom.py | Python | mit | 338 | [
"VisIt"
] | 8837622746c74359d3a139f7f5179ce1b1909ec1b0533db91795333419ba6143 |
#ImportModules
import ShareYourSystem as SYS
from ShareYourSystem.Specials.Simulaters import Populater,Brianer
#Definition
MyBrianer=Brianer.BrianerClass(
).update(
{
#Set here the global net parameters
'StimulatingStepTimeFloat':0.1
}
).produce(
['E','I'],
Populater.PopulaterClass,
{
#Here are d... | Ledoux/ShareYourSystem | Pythonlogy/draft/Simulaters/Brianer/draft/01_ExampleCell copy 4.py | Python | mit | 2,372 | [
"Brian"
] | d074c0987a2a2b3021093b0b0585d776cbb3e7fcfcca2225bbe8673c950a655f |
from __future__ import division, print_function
import numpy as np
import xarray as xr
import numpy.ma as ma
from scipy.interpolate import LinearNDInterpolator as lndi
import matplotlib.dates as dates
import copy
def get_nv(self):
"""
Finds the element vertex's.
"""
neighbours_orig = self._ne... | moflaher/fvcom_pyprocessor | fvcom_pyprocessor/utilities.py | Python | agpl-3.0 | 9,163 | [
"NetCDF"
] | f12003eb4bd39195be6b29da3990319aaa549dd4bab41155ca658bd4be80d577 |
import urllib.parse
import pytest
import tldextract
import cocrawler.urls as urls
from cocrawler.urls import URL
def test_urllib_parse():
# This is just here so I can understand what urllib is doing with these:
assert urllib.parse.urljoin('http://example.com/foo', '///bar') == 'http://example.com/bar'
a... | cocrawler/cocrawler | tests/unit/test_urls.py | Python | apache-2.0 | 13,568 | [
"VisIt"
] | b0bc21a8eaffa4add3305c2b7b8b568afa378e013f94e4e153ccfae31f8e3639 |
# (c) 2014 Michael DeHaan, <michael@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | goozbach/ansible | lib/ansible/playbook/role/metadata.py | Python | gpl-3.0 | 3,373 | [
"Galaxy"
] | a11ace556f623b6271e05507f8c81e2d40f048b76bf7aff60b4a17eb102809d2 |
#! /usr/bin/env python2.7
"""
This script performs event averaging for particle
spectra and anisotropic flow coefficients calculated
from event-by-event simulations
v_n is analyzed up to n = 6
Format for particle_XXX_vndata.dat file:
n_order real_part real_part_err imag_part imag_p... | chunshen1987/HBTcorrelation_MCafterburner | ebe_scripts/average_event_spvn_pure_hydro.py | Python | mit | 47,473 | [
"Psi4"
] | 275a6dfb167736fa793ad39d0a948266b87aa37f36ea9825109e45b9a42daa67 |
import re
import numpy as np
def parse_file(self):
"""Extract important attributes from the Gaussian realtime logfile."""
filename = self.logfile
lines = [line.rstrip('\n') for line in open(filename)]
muX = []
muY = []
muZ = []
mX = []
mY = []
mZ = []
eX = []
eY = []
... | wavefunction91/gaussian_realtime_parse | parse_file.py | Python | mit | 12,348 | [
"Gaussian"
] | 5299bcc66296613fbe81803096d445f40dbcc0ab349ac7695080bb6a40c6ad8e |
"""
Demonstration application for range search using R tree.
Left mouse press starts rectangle add, Left mouse release closes rectangle add
Right mouse click begins drag of rectangle.
"""
import tkinter
from adk.R import RTree
from adk.region import Region, minValue, maxValue, X, Y
Rectan... | heineman/algorithms-nutshell-2ed | PythonCode/demo/app_R_range.py | Python | mit | 6,569 | [
"VisIt"
] | d3f8380afcefb77bf1a8aca41a191fde647d0945465ee7ce108462986368ac56 |
"""
PDBProp
=======
"""
import gzip
import json
import logging
import os.path as op
import mmtf
import os
from cobra.core import DictList
import pandas as pd
import requests
import deprecation
from Bio.PDB import PDBList
from lxml import etree
from six.moves.urllib_error import URLError
from six.moves.urllib.request i... | nmih/ssbio | ssbio/databases/pdb.py | Python | mit | 34,959 | [
"BLAST",
"Biopython",
"CRYSTAL"
] | 2d9925d8198346200be5fcde45d5547f45767c7cdb08c5d6267ae95e36bd268a |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2002-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2008 Jerome Rapinat
# Copyright (C) 2008 Benny Malengier
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the ... | arunkgupta/gramps | gramps/gen/filters/rules/family/_hasnote.py | Python | gpl-2.0 | 1,722 | [
"Brian"
] | 1f9ec1ba211eb3524e48a3c76e84c169bf22586a90b47a68c2bb92f2a0d8cb36 |
#!/usr/bin/env python
##############################################################################################
#
#
# regrid_emissions_N96e.py
#
#
# Requirements:
# Iris 1.10, time, cf_units, numpy
#
#
# This Python script has been written by N.L. Abraham as part of the UKCA Tutorials:
# http://www.ukca.ac.u... | acsis-project/emissions | emissions/python/timeseries_1960-2020/regrid_MeCHO_emissions_n96e_360d.py | Python | gpl-3.0 | 17,485 | [
"NetCDF"
] | d9763d78913a47310100047cdb3cee016b8fbdfd05bfeaf88fdd1cac177641d7 |
# -*- coding: utf-8 -*-
#
# This file is part of cclib (http://cclib.github.io), a library for parsing
# and interpreting the results of computational chemistry packages.
#
# Copyright (C) 2007-2014, the cclib development team
#
# The library is free software, distributed under the terms of
# the GNU Lesser General Pub... | ChemSem/cclib | src/cclib/parser/orcaparser.py | Python | lgpl-2.1 | 35,788 | [
"Gaussian",
"ORCA",
"cclib"
] | 1782e84d1f9655c024ee434b66f95562a44b7f2d6b96ebb0d6bc07aed839f7e7 |
# Software License Agreement (BSD License)
#
# Copyright (c) 2009-2014, Eucalyptus Systems, Inc.
# All rights reserved.
#
# Redistribution and use of this software in source and binary forms, with or
# without modification, are permitted provided that the following conditions
# are met:
#
# Redistributions of source ... | shaon/emis | install-emis.py | Python | gpl-3.0 | 15,926 | [
"Brian",
"VisIt"
] | eddee345f16661a997be77a4c6e3091de40a1c16811077ab4df49f0e753a9e74 |
"""
Provide a generic structure to support window functions,
similar to how we have a Groupby object.
"""
from collections import defaultdict
from datetime import timedelta
from textwrap import dedent
from typing import List, Optional, Set
import warnings
import numpy as np
import pandas._libs.window as libwindow
fro... | toobaz/pandas | pandas/core/window.py | Python | bsd-3-clause | 84,775 | [
"Gaussian"
] | f628c9acb492f85bca85fdb778f7c879b906cd0c831ab721bad61ff742ec7412 |
""" GraphUtilities is a a collection of utility functions and classes used
in the DIRAC Graphs package.
The DIRAC Graphs package is derived from the GraphTool plotting package of the
CMS/Phedex Project by ... <to be added>
"""
import os
import time
import datetime
import calendar
import math
import pytz
i... | Andrew-McNab-UK/DIRAC | Core/Utilities/Graphs/GraphUtilities.py | Python | gpl-3.0 | 14,278 | [
"DIRAC"
] | d3b66f822a1f8ff5634b5ce7372b26c6a6d681356e77bfce177374c714a44283 |
"""This file contains very superficial tests of the PISM Python
wrappers. The goal is to be able to detect changes in the API
(function signatures, etc), not to test correctness.
Use with nose (https://pypi.python.org/pypi/nose/) and coverage.py
(https://pypi.python.org/pypi/coverage)
Run this to get a coverage repor... | talbrecht/pism_pik | test/nosetests.py | Python | gpl-3.0 | 36,151 | [
"NetCDF"
] | 1cb88782144e1a2e2a2c54e19082ff7324b15a4a62274a0e2aea2d6368fad457 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
dimensions= 2
size1d = 5
halfSize1 = [size1d,size1d,0.1]
halfSize2 = halfSize1
GRIDSIZE = [16,16]
# wavepacket parameters
k0_x = 0
k0_y = 0
gaussWidth_x = 1.5
gaussWidth_y = 1.5
potentialCoefficient1= [-2.0,0,0]
potentialCoefficient2= [ 2.0,0,0]
O.engines... | cosurgi/trunk | examples/qm/2d-coulomb-interaction.py | Python | gpl-2.0 | 3,067 | [
"Gaussian"
] | 2bfcc50d29cc728b1c645019513e25333d305fa81dd021adf8bcebfe7da0ea25 |
import json
import os
from shutil import copytree
from subprocess import CalledProcessError, check_call, check_output
import pytest
import pkgpanda.build
import pkgpanda.build.cli
from pkgpanda.util import expect_fs
def get_tar_contents(filename):
return set(check_output(["tar", "-tf", filename]).decode().split... | asridharan/dcos | pkgpanda/build/tests/build_integration_test.py | Python | apache-2.0 | 6,700 | [
"VisIt"
] | bb2ee658971d9d9f0a76a8e4ad11940f3941305dd86856cd2b0c97db519f79e6 |
#!/usr/bin/env python
"""
remove FileCatalog directories
"""
import os
import DIRAC
from COMDIRAC.Interfaces import critical
from COMDIRAC.Interfaces import DSession
from COMDIRAC.Interfaces import createCatalog
from COMDIRAC.Interfaces import pathFromArguments
if __name__ == "__main__":
import sys
from DIRAC... | pigay/COMDIRAC | Interfaces/scripts/drmdir.py | Python | gpl-3.0 | 1,444 | [
"DIRAC"
] | e8b53465fb3587c4390f6af8a4a8f0216222716a0352ea8548e0e0cfa1aed076 |
import mxnet as mx
import logging
import os
import time
def _get_lr_scheduler(args, kv, MF=True):
if 'lr_factor' not in args or args.lr_factor >= 1:
return (args.lr, None)
epoch_size = args.num_examples / args.batch_size
if 'dist' in args.kv_store:
epoch_size /= kv.num_workers
begin_epo... | deepinsight/Deformable-ConvNets | deeplab/common/fit.py | Python | apache-2.0 | 8,087 | [
"Gaussian"
] | 3afc10cdbd7827f83ff010a75f6279ae9f60be96b6da4465e4cfac3d562b6977 |
#
# Copyright 2001 - 2016 Ludek Smid [http://www.ospace.net/]
#
# This file is part of Outer Space.
#
# Outer Space is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (... | ospaceteam/outerspace | client/osci/dialog/DiplomacyDlg.py | Python | gpl-2.0 | 19,031 | [
"Galaxy"
] | bc5841467524d681344730a9c563b28eb09c38c5228b9294ca3bfcc3ab3723ba |
from __future__ import print_function, division
import numpy as np
from pymatgen import units as pymatgen_units
from ..core import Writable
from .abidata import input_variable_blocks
from .utils import listify
from .variable import InputVariable, SpecialInputVariable
__all__ = ['AbinitInput']
class AbinitInput(Wri... | trangel/OPTpy | OPTpy/Abinit/abinitinput.py | Python | gpl-3.0 | 5,902 | [
"ABINIT",
"pymatgen"
] | e06a4209e829b80451e512a24dd0cbb03c17722e1446a505eb4effeb1f86acaa |
from distutils.core import setup
setup(
name='CLQC',
version='1.1',
author='Sven H. Giese',
author_email='sven.giese@tu-berlin.de',
packages=['CLQC'],
scripts=['bin/CLQC_ContactMap.py','bin/CLQC_Distogram.py', 'bin/CLQC_CoverageProfile.py'],
url='http://pypi.python.org/pypi/TowelStuff/',
... | gieses/CLQC | setup.py | Python | mit | 504 | [
"HTSeq"
] | 9c51ef9b248b48aac8114c9a7b1f274e9cdb69482070681514d8901ec1bf54f7 |
# -*- coding: utf-8 -*-
"""
codegen
~~~~~~~
Extension to ast that allow ast -> python code generation.
:copyright: Copyright 2008 by Armin Ronacher.
:license: BSD.
"""
from ast import *
BOOLOP_SYMBOLS = {
And: 'and',
Or: 'or'
}
BINOP_SYMBOLS = {
Add: '+',
Su... | wwright2/dcim3-angstrom1 | sources/bitbake/lib/codegen.py | Python | mit | 16,325 | [
"VisIt"
] | 9e37fe08e0f42772feee2ccf36a71c7f526e24c8891664f34a9efa21a223995b |
CALLS=[{
"method":"POST",
"path":"/accounts/",
"view_func_name":"account_create",
"access_doc":"Any admin app.",
"url_params":{
},
"query_opts":{
},
"data_fields":{
'contact_email':'A valid email at which to reach the account holder.',
'secondary_secret_p':'... | newmediamedicine/indivo_server_1_0 | doc/sphinx/autogen/api-skeleton.py | Python | gpl-3.0 | 210,189 | [
"VisIt"
] | acd8c2761eb5111dd3b71883341755ebf6269384dd96879816681fb4b2116d61 |
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from scipy._lib._util import getfullargspec_no_self as _getfullargspec
import sys
import keyword
import re
import types
import warnings
import inspect
from itertools import zip_longest
from scipy._lib import doccer... | matthew-brett/scipy | scipy/stats/_distn_infrastructure.py | Python | bsd-3-clause | 137,114 | [
"Gaussian"
] | 28422a670a1c88e7aa7b3e9e15b1d77a7f24551e78b8297f4656aa4135d71664 |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/nao/m_sbt.py | Python | apache-2.0 | 6,825 | [
"PySCF",
"SIESTA"
] | cb4bbaf0182862d9c47bcd40080d4e4d6021708a727fbef249416dc4de89a195 |
import logging
import os
from django.shortcuts import render
from django.views.generic import View
from django.http import HttpResponse
from django.conf import settings
class FrontendAppView(View):
"""
Serves the compiled frontend entry point (only works if you have run `make
build-frontend`).
"""
... | nadege/food-organizer | backend/apps/project/views.py | Python | gpl-3.0 | 1,258 | [
"VisIt"
] | d865bad499cf5fb96e412c923fd08d1f7e166e4e422e8c4d93ec5759c7d58dee |
# -*- coding: utf-8 -*-
import psycopg2
import ast
import json
import numpy as np
import distance
import math
import helpers
from us_state_abbrevation import *
with open('api_key_list.config') as key_file:
api_key_list = json.load(key_file)
api_key = api_key_list["distance_api_key_list"]
conn_str = api_key_list["c... | kennethcc2005/travel_with_friends | outside_helpers.py | Python | mit | 31,962 | [
"CASINO"
] | 9de97ff9c59b9476c19c3692ce3b8cf390f2c456972638cc42dc3d96a6b9b336 |
from django.conf import settings
from django.contrib.auth.decorators import login_required
from django.contrib.sites.models import Site
from django.db.models import F
from django.http import HttpResponsePermanentRedirect, HttpResponseServerError
from django.shortcuts import get_object_or_404
from django.template import... | fwenzel/millimeter | apps/shortener/views.py | Python | bsd-3-clause | 2,030 | [
"VisIt"
] | 2c041145b151a245f5ad56fe81e7d04321e17da0f004167ed00932ce6db8d449 |
import sys
if sys.version_info < (2, 7):
import unittest2 as unittest
else:
import unittest
from mock import patch, call, Mock
from cctrl.error import InputErrorException
from cctrl.app import AppController
from cctrl.settings import Settings
from pycclib.cclib import GoneError
class AppControllerTestCase(u... | cloudControl/cctrl | tests/app_test.py | Python | apache-2.0 | 6,467 | [
"cclib"
] | 482200ae10ee7de800dd21d9b51bcd7819149dd07701fb215675ddd075969ca4 |
# Orca
#
# Copyright 2010 Joanmarie Diggs.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library i... | GNOME/orca | src/orca/scripts/toolkits/J2SE-access-bridge/script_utilities.py | Python | lgpl-2.1 | 5,118 | [
"ORCA"
] | 15e98be0420fa70e1d4afa4a3d7d56561f413c55422f0c776d91c00fcfbd8ace |
#!/usr/bin/env python2.7
'''
RSD: The reciprocal smallest distance algorithm.
Wall, D.P., Fraser, H.B. and Hirsh, A.E. (2003) Detecting putative orthologs, Bioinformatics, 19, 1710-1711.
Original author: Dennis P. Wall, Department of Biological Sciences, Stanford University.
Contributors: I-Hsien Wu, Computational B... | todddeluca/reciprocal_smallest_distance | rsd/rsd.py | Python | mit | 32,578 | [
"BLAST"
] | e724e2367d1fa058fef95c6d946ee5c0081e578fae596fa1a391fb4cbb87277a |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Create the RenderWindow, Renderer and both Actors
#
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
iren = vtk.vtkRenderWindowInteractor()
iren.SetR... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Filters/Core/Testing/Python/stripF.py | Python | gpl-3.0 | 1,534 | [
"VTK"
] | 37e0ee8b9567abbd47b4dbb0a11879e11b672332b4d1f9899e114083266c7d64 |
arenaRankName = {
"01": "Novice",
"02": "Contender",
"03": "Duelist",
"04": "Berserker",
"05": "Sage",
"06": "Guardian",
"07": "Titan",
"08": "General",
"09": "Master",
"10": "Archfiend",
"11": "Ascended",
"12": "Celestial",
"13": "Apollo",
"14": "Phanes",
"15... | Blackrobe/blackrobe.github.io | BFJPStoryArchive/storyutil.py | Python | gpl-2.0 | 26,218 | [
"CRYSTAL"
] | 38e3b3703508e3061bd025d952f3d6794bb197105058f75bb0b518cae5508f81 |
#!/usr/bin/python
"""Test of sayAll."""
from macaroon.playback import *
import utils
sequence = MacroSequence()
#sequence.append(WaitForDocLoad())
sequence.append(PauseAction(5000))
sequence.append(utils.StartRecordingAction())
sequence.append(KeyComboAction("KP_Add"))
sequence.append(utils.AssertPresentationActio... | GNOME/orca | test/keystrokes/firefox/say_all_wiki.py | Python | lgpl-2.1 | 13,353 | [
"ORCA"
] | 0c2ed160d22b4e09160e5e99ebb6600ef7e9476fad03f81e42e5f357b89e4430 |
#!/usr/bin/env python2.7
# -*- coding: utf-8 -*-
####################################################################################
### Copyright (C) 2015-2019 by ABLIFE
####################################################################################
#########################################################... | ablifedev/ABLIRC | ABLIRC/bin/public/Extract_Region_sequence.py | Python | mit | 12,799 | [
"HTSeq",
"pysam"
] | ce374db4a91b2e3f42494950ee6d64ae81037e4a92435c7e2198745e6a470117 |
#!/usr/bin/env python
#
# Wrapper script for starting the biopet-seqstat JAR package
#
# This script is written for use with the Conda package manager and is copied
# from the peptide-shaker wrapper. Only the parameters are changed.
# (https://github.com/bioconda/bioconda-recipes/blob/master/recipes/peptide-shaker/pept... | joachimwolff/bioconda-recipes | recipes/biopet-seqstat/0.1/biopet-seqstat.py | Python | mit | 3,365 | [
"Bioconda"
] | 5dd33d554e12d3e8689357716f0ecefaff6d3f6a907275f7626b437ce05fb534 |
#!/usr/bin/env python2.7
"""
relion_it.py
============
Script for automated, on-the-fly single-particle analysis in RELION 3
Authors: Sjors H.W. Scheres, Takanori Nakane & Colin M. Palmer
Usage:
relion_it.py [extra_options.py [extra_options2.py ....] ] [--gui] [--continue]
To get started, go to the intended lo... | bforsbe/relion | scripts/relion_it.py | Python | gpl-2.0 | 110,959 | [
"Gaussian"
] | 1f8321895d6dd12cedb12f7a797124fa21b81214b7b27f7fec2805351d31625e |
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